Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985140 | XP_039687425.1 | 71.429 | 70 | 20 | 0 | 36 | 105 | 12 | 81 | 2.15e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985140 | G7I5Y1 | 71.429 | 70 | 20 | 0 | 36 | 105 | 12 | 81 | 1.03e-23 | 99.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0985140 | 0.807209 | 5.653334e-50 | -8.615850e-47 |
| Msa0767760 | Msa0985140 | 0.815024 | 1.142384e-51 | -8.615850e-47 |
| Msa0985130 | Msa0985140 | 0.809947 | 1.470829e-50 | -8.615850e-47 |
| Msa0985140 | Msa1260160 | 0.869770 | 2.412865e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985140 | MtrunA17_Chr1g0155901 | 71.429 | 70 | 20 | 0 | 36 | 105 | 12 | 81 | 4.46e-27 | 98.2 |
| Msa0985140 | MtrunA17_Chr3g0098211 | 47.826 | 69 | 36 | 0 | 35 | 103 | 177 | 245 | 4.36e-15 | 69.3 |
| Msa0985140 | MtrunA17_Chr3g0098211 | 44.118 | 68 | 37 | 1 | 35 | 101 | 13 | 80 | 4.83e-11 | 57.8 |
| Msa0985140 | MtrunA17_Chr7g0270601 | 47.059 | 68 | 36 | 0 | 36 | 103 | 15 | 82 | 6.32e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985140 | AT3G62200.1 | 44.118 | 68 | 37 | 1 | 36 | 103 | 32 | 98 | 5.59e-11 | 58.2 |
| Msa0985140 | AT3G62210.1 | 41.558 | 77 | 44 | 1 | 27 | 103 | 17 | 92 | 6.46e-11 | 57.4 |
Find 27 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTCAATGGTGATGATA+TGG | 0.266351 | 6_4:+31107676 | None:intergenic |
| ACTTTAATTTCCTCTTGATA+TGG | 0.296241 | 6_4:+31109671 | None:intergenic |
| CTTTCGAAAGCCAACCTTCA+TGG | 0.297030 | 6_4:-31107729 | Msa0985140:CDS |
| TAGTTATCAGCAAATGATAT+TGG | 0.331613 | 6_4:-31109696 | Msa0985140:CDS |
| AAGTCGAGTTATTGTTTAAT+CGG | 0.345157 | 6_4:-31109652 | Msa0985140:CDS |
| GTGTATATCAGAAACTATAC+TGG | 0.350377 | 6_4:-31109630 | Msa0985140:CDS |
| TCATGGAGAACTTTCCATTT+CGG | 0.365997 | 6_4:-31107712 | Msa0985140:CDS |
| GCTAATGTTGTTAGCAATGC+TGG | 0.418922 | 6_4:+31107758 | None:intergenic |
| GTAATGCTCTCGAGGTTTGT+TGG | 0.430299 | 6_4:+31107780 | None:intergenic |
| ACTTTCCATTTCGGCTTATG+TGG | 0.432252 | 6_4:-31107703 | Msa0985140:CDS |
| GGTGTCCACATAAGCCGAAA+TGG | 0.454459 | 6_4:+31107698 | None:intergenic |
| AAGCGTGTTTAGAATTTCAA+TGG | 0.456503 | 6_4:+31107665 | None:intergenic |
| CTAAACACGCTTTCCGTCGT+CGG | 0.493547 | 6_4:-31107654 | Msa0985140:CDS |
| AGGACACGGCGGTGAGATGA+TGG | 0.495656 | 6_4:+31107622 | None:intergenic |
| AATTTCAATGGTGATGATAT+GGG | 0.499304 | 6_4:+31107677 | None:intergenic |
| GGAAAGTTCTCCATGAAGGT+TGG | 0.532897 | 6_4:+31107719 | None:intergenic |
| CAATGCTGGTAATGCTCTCG+AGG | 0.576756 | 6_4:+31107772 | None:intergenic |
| ACTATACTGGGCATAGGTGA+AGG | 0.586646 | 6_4:-31109617 | Msa0985140:intron |
| TCAGAAACTATACTGGGCAT+AGG | 0.594277 | 6_4:-31109623 | Msa0985140:CDS |
| AAATGGAAAGTTCTCCATGA+AGG | 0.603684 | 6_4:+31107715 | None:intergenic |
| GATATTGGAGCCATATCAAG+AGG | 0.616970 | 6_4:-31109681 | Msa0985140:CDS |
| AGGCAAAGATCTCAGTTTGG+AGG | 0.627657 | 6_4:-31107824 | Msa0985140:intron |
| CACGGCGGTGAGATGATGGA+CGG | 0.668397 | 6_4:+31107626 | None:intergenic |
| TGTATATCAGAAACTATACT+GGG | 0.672895 | 6_4:-31109629 | Msa0985140:CDS |
| TTGAAGTAACTATTAGGACA+CGG | 0.708681 | 6_4:+31107608 | None:intergenic |
| ATGGACGGATATTCCGACGA+CGG | 0.736461 | 6_4:+31107641 | None:intergenic |
| AAGTAACTATTAGGACACGG+CGG | 0.825540 | 6_4:+31107611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAAATAAAATTGATA+AGG | - | chr6_4:31107636-31107655 | Msa0985140:CDS | 10.0% |
| !!! | ATTTTTCTTAATTTGATTTT+TGG | - | chr6_4:31108078-31108097 | Msa0985140:intron | 10.0% |
| !! | AATATAAAAGAACAATAAGT+AGG | + | chr6_4:31108486-31108505 | None:intergenic | 15.0% |
| !!! | TTATTGTTCTTTTATATTTC+TGG | - | chr6_4:31108488-31108507 | Msa0985140:intron | 15.0% |
| !!! | GTTATCTAAAATATTAATGT+TGG | - | chr6_4:31109474-31109493 | Msa0985140:intron | 15.0% |
| !! | TTTATTATAATAGACTTTGA+TGG | + | chr6_4:31110044-31110063 | None:intergenic | 15.0% |
| !!! | TATTGGATCTTTAAAATTGA+TGG | - | chr6_4:31108148-31108167 | Msa0985140:intron | 20.0% |
| !! | TGAATTACTCAACAAAAATT+CGG | - | chr6_4:31108405-31108424 | Msa0985140:intron | 20.0% |
| !! | ATTAATTGATAAGAAATTGC+AGG | + | chr6_4:31109321-31109340 | None:intergenic | 20.0% |
| !! | TGCAATTTCTTATCAATTAA+TGG | - | chr6_4:31109320-31109339 | Msa0985140:intron | 20.0% |
| !! | AAATAAACTTTCTCAGTTAT+AGG | - | chr6_4:31109427-31109446 | Msa0985140:intron | 20.0% |
| ! | AAAATACAACACCAAAAGTA+TGG | + | chr6_4:31107871-31107890 | None:intergenic | 25.0% |
| ! | ACAACATAAACAACATTAAC+AGG | + | chr6_4:31107976-31107995 | None:intergenic | 25.0% |
| !!! | TTCACAATTTGCTATGTTTT+AGG | - | chr6_4:31108124-31108143 | Msa0985140:intron | 25.0% |
| !!! | TTTGCTATGTTTTAGGATAT+TGG | - | chr6_4:31108131-31108150 | Msa0985140:intron | 25.0% |
| ! | ATGTATACCAGAAACATTTA+AGG | + | chr6_4:31108436-31108455 | None:intergenic | 25.0% |
| ! | TAGTTATCAGCAAATGATAT+TGG | - | chr6_4:31108582-31108601 | Msa0985140:intron | 25.0% |
| !! | ACTTTAATTTCCTCTTGATA+TGG | + | chr6_4:31108610-31108629 | None:intergenic | 25.0% |
| ! | AAGTCGAGTTATTGTTTAAT+CGG | - | chr6_4:31108626-31108645 | Msa0985140:intron | 25.0% |
| ! | TGTATATCAGAAACTATACT+GGG | - | chr6_4:31108649-31108668 | Msa0985140:intron | 25.0% |
| !!! | ATTTCCTTTTGCTATTTCTT+TGG | - | chr6_4:31108744-31108763 | Msa0985140:intron | 25.0% |
| !!! | TTTTGCTATTTCTTTGGAAA+GGG | - | chr6_4:31108750-31108769 | Msa0985140:intron | 25.0% |
| ! | CAACATAAGCAAATAATACA+TGG | + | chr6_4:31108894-31108913 | None:intergenic | 25.0% |
| !! | ATTGTATGATCTATCTTTTG+TGG | - | chr6_4:31108948-31108967 | Msa0985140:intron | 25.0% |
| !! | TTGTATGATCTATCTTTTGT+GGG | - | chr6_4:31108949-31108968 | Msa0985140:intron | 25.0% |
| ! | GAGAAATCATATAGACTTAA+TGG | - | chr6_4:31109191-31109210 | Msa0985140:intron | 25.0% |
| ! | TTAGATAACAAAATCCAACA+TGG | + | chr6_4:31109463-31109482 | None:intergenic | 25.0% |
| !!! | AAAATATTAATGTGCCGTTT+TGG | - | chr6_4:31109481-31109500 | Msa0985140:intron | 25.0% |
| !!! | TTTGGATCATTTTTTGTTGA+CGG | - | chr6_4:31109524-31109543 | Msa0985140:intron | 25.0% |
| !! | GTTGGATTTGTTTATAATGA+TGG | - | chr6_4:31109569-31109588 | Msa0985140:intron | 25.0% |
| ! | CAAAAATTCTCACACATAAA+AGG | + | chr6_4:31109611-31109630 | None:intergenic | 25.0% |
| ! | CATTTCAATCATTAGTTAAC+AGG | + | chr6_4:31109932-31109951 | None:intergenic | 25.0% |
| !! | AATTTCAATGGTGATGATAT+GGG | + | chr6_4:31110604-31110623 | None:intergenic | 25.0% |
| !! | GTGTTTTTATGTGTGTATCT+CGG | - | chr6_4:31107770-31107789 | Msa0985140:CDS | 30.0% |
| ! | TTTTTCTGCTTCCATACTTT+TGG | - | chr6_4:31107798-31107817 | Msa0985140:CDS | 30.0% |
| !! | GTGTTTTTATGTGTGTATCT+CGG | - | chr6_4:31107770-31107789 | Msa0985140:CDS | 30.0% |
| ! | TTTTTCTGCTTCCATACTTT+TGG | - | chr6_4:31107798-31107817 | Msa0985140:CDS | 30.0% |
| CAAATTGTGAATCAACTCAT+CGG | + | chr6_4:31108115-31108134 | None:intergenic | 30.0% | |
| TGATGGTAATTTGATTGACT+CGG | - | chr6_4:31108165-31108184 | Msa0985140:intron | 30.0% | |
| TTCAACTAACACAGTATAAC+AGG | + | chr6_4:31108242-31108261 | None:intergenic | 30.0% | |
| ACTGTGTTAGTTGAAGTTAT+TGG | - | chr6_4:31108247-31108266 | Msa0985140:intron | 30.0% | |
| GGTAAAACCTTAAATGTTTC+TGG | - | chr6_4:31108426-31108445 | Msa0985140:intron | 30.0% | |
| ATAAGTAGGAGAAGAAGAAT+AGG | + | chr6_4:31108472-31108491 | None:intergenic | 30.0% | |
| !! | AGAACAAAAAGTACCTTATC+AGG | + | chr6_4:31108519-31108538 | None:intergenic | 30.0% |
| GTGTATATCAGAAACTATAC+TGG | - | chr6_4:31108648-31108667 | Msa0985140:intron | 30.0% | |
| CTCTCACTCAATAATACATT+TGG | - | chr6_4:31108704-31108723 | Msa0985140:intron | 30.0% | |
| TCACTCAATAATACATTTGG+TGG | - | chr6_4:31108707-31108726 | Msa0985140:intron | 30.0% | |
| CTTTCCAAAGAAATAGCAAA+AGG | + | chr6_4:31108751-31108770 | None:intergenic | 30.0% | |
| !!! | CTTTTGCTATTTCTTTGGAA+AGG | - | chr6_4:31108749-31108768 | Msa0985140:intron | 30.0% |
| ! | GGGATTAGAATAGTCTTTTA+AGG | - | chr6_4:31108779-31108798 | Msa0985140:intron | 30.0% |
| !! | GCTTTATTTGAGAAGAATAC+TGG | + | chr6_4:31108842-31108861 | None:intergenic | 30.0% |
| ! | GTTTTCAATGCAAATCAAGA+TGG | + | chr6_4:31108864-31108883 | None:intergenic | 30.0% |
| ! | TGTATGATCTATCTTTTGTG+GGG | - | chr6_4:31108950-31108969 | Msa0985140:intron | 30.0% |
| ATCTAAGAGAGAACAGAATA+AGG | + | chr6_4:31109262-31109281 | None:intergenic | 30.0% | |
| GATAACTTGGAATATTGTTG+AGG | - | chr6_4:31109391-31109410 | Msa0985140:intron | 30.0% | |
| ATAACAAAATCCAACATGGA+AGG | + | chr6_4:31109459-31109478 | None:intergenic | 30.0% | |
| CTCAATTCAAACAACCAAAA+CGG | + | chr6_4:31109498-31109517 | None:intergenic | 30.0% | |
| ! | GTTTGAATTGAGGTATGTTT+TGG | - | chr6_4:31109506-31109525 | Msa0985140:intron | 30.0% |
| ! | TAATGCACTATTTGCTAGAT+AGG | + | chr6_4:31109738-31109757 | None:intergenic | 30.0% |
| ATCATTAGTTAACAGGTCTT+CGG | + | chr6_4:31109925-31109944 | None:intergenic | 30.0% | |
| ATAAAACCAATAAGAAGCAG+AGG | + | chr6_4:31110004-31110023 | None:intergenic | 30.0% | |
| ! | TGCTTGAATATCACTGTTTT+TGG | - | chr6_4:31110310-31110329 | Msa0985140:intron | 30.0% |
| ATGAATGTGGAATATGTGAA+AGG | - | chr6_4:31110434-31110453 | Msa0985140:intron | 30.0% | |
| ! | GAATTTCAATGGTGATGATA+TGG | + | chr6_4:31110605-31110624 | None:intergenic | 30.0% |
| ! | AAGCGTGTTTAGAATTTCAA+TGG | + | chr6_4:31110616-31110635 | None:intergenic | 30.0% |
| TGATGTTATGGAGTTTGGTT+TGG | - | chr6_4:31107728-31107747 | Msa0985140:CDS | 35.0% | |
| ! | GATGTTATGGAGTTTGGTTT+GGG | - | chr6_4:31107729-31107748 | Msa0985140:CDS | 35.0% |
| !! | ATGTTATGGAGTTTGGTTTG+GGG | - | chr6_4:31107730-31107749 | Msa0985140:CDS | 35.0% |
| !!! | TTCCATACTTTTGGTGTTGT+GGG | - | chr6_4:31107807-31107826 | Msa0985140:CDS | 35.0% |
| TTAACAGGCAGAAAACACAA+AGG | + | chr6_4:31107961-31107980 | None:intergenic | 35.0% | |
| ATCCATCATTTCTATGAGGA+TGG | - | chr6_4:31108004-31108023 | Msa0985140:intron | 35.0% | |
| AACCATCCTCATAGAAATGA+TGG | + | chr6_4:31108009-31108028 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCAAAACCTGATA+AGG | - | chr6_4:31108503-31108522 | Msa0985140:intron | 35.0% |
| TTGAGTGAGAGAAGAGATAA+AGG | + | chr6_4:31108695-31108714 | None:intergenic | 35.0% | |
| GAATACTGGCAAGAACAAAT+TGG | + | chr6_4:31108828-31108847 | None:intergenic | 35.0% | |
| ACTTTGTGAAAACTTCTAGC+AGG | - | chr6_4:31109141-31109160 | Msa0985140:intron | 35.0% | |
| ! | GTTGATGAGAGAAGATAACT+TGG | - | chr6_4:31109378-31109397 | Msa0985140:intron | 35.0% |
| !!! | CGTTTTGGTTGTTTGAATTG+AGG | - | chr6_4:31109496-31109515 | Msa0985140:intron | 35.0% |
| ! | GTAGTTTGTATGCTCAATGT+AGG | - | chr6_4:31109820-31109839 | Msa0985140:intron | 35.0% |
| TGAATGATGAATCTGTGCTT+TGG | - | chr6_4:31110093-31110112 | Msa0985140:intron | 35.0% | |
| ACATTCATCTCAAAGAAGTC+TGG | + | chr6_4:31110422-31110441 | None:intergenic | 35.0% | |
| !! | AGACTTCTTTGAGATGAATG+TGG | - | chr6_4:31110421-31110440 | Msa0985140:intron | 35.0% |
| AAATGGAAAGTTCTCCATGA+AGG | + | chr6_4:31110566-31110585 | None:intergenic | 35.0% | |
| TCATGGAGAACTTTCCATTT+CGG | - | chr6_4:31110566-31110585 | Msa0985140:intron | 35.0% | |
| TGGTTGTGCAACTGATGTTA+TGG | - | chr6_4:31107716-31107735 | Msa0985140:CDS | 40.0% | |
| GCAACTGATGTTATGGAGTT+TGG | - | chr6_4:31107723-31107742 | Msa0985140:CDS | 40.0% | |
| !!! | CTTCCATACTTTTGGTGTTG+TGG | - | chr6_4:31107806-31107825 | Msa0985140:CDS | 40.0% |
| TATCTAGAGATAGCTGACGT+TGG | - | chr6_4:31107893-31107912 | Msa0985140:intron | 40.0% | |
| ATCTAGAGATAGCTGACGTT+GGG | - | chr6_4:31107894-31107913 | Msa0985140:intron | 40.0% | |
| !! | ACGTTGGGTGTTGTCTTTTT+GGG | - | chr6_4:31107909-31107928 | Msa0985140:intron | 40.0% |
| !! | TGTTGTCTTTTTGGGAGCTT+CGG | - | chr6_4:31107917-31107936 | Msa0985140:intron | 40.0% |
| GCACATCCATCATTTCTATG+AGG | - | chr6_4:31108000-31108019 | Msa0985140:intron | 40.0% | |
| GATATTGGAGCCATATCAAG+AGG | - | chr6_4:31108597-31108616 | Msa0985140:intron | 40.0% | |
| TCAGAAACTATACTGGGCAT+AGG | - | chr6_4:31108655-31108674 | Msa0985140:intron | 40.0% | |
| ! | TTTCTTTGGAAAGGGTAGTG+AGG | - | chr6_4:31108758-31108777 | Msa0985140:intron | 40.0% |
| ! | TTCTTTGGAAAGGGTAGTGA+GGG | - | chr6_4:31108759-31108778 | Msa0985140:intron | 40.0% |
| ! | ATCTTTTGTGGGGTTTGTCT+CGG | - | chr6_4:31108960-31108979 | Msa0985140:intron | 40.0% |
| TCACACCATAACAGAAATGC+AGG | + | chr6_4:31109024-31109043 | None:intergenic | 40.0% | |
| AAATATTGCAAGACAGCCAC+AGG | + | chr6_4:31109082-31109101 | None:intergenic | 40.0% | |
| TTGTGAAAACTTCTAGCAGG+TGG | - | chr6_4:31109144-31109163 | Msa0985140:intron | 40.0% | |
| ! | TAGGATTTTGCCTTCCATGT+TGG | - | chr6_4:31109446-31109465 | Msa0985140:intron | 40.0% |
| AATGCATGCTCAAAGACAAC+TGG | - | chr6_4:31109948-31109967 | Msa0985140:intron | 40.0% | |
| GATGATCCTCTGCTTCTTAT+TGG | - | chr6_4:31109995-31110014 | Msa0985140:intron | 40.0% | |
| ! | TCAAAGAAGTCTGGTTCGAA+TGG | + | chr6_4:31110413-31110432 | None:intergenic | 40.0% |
| GAAAGGCAAAGATCTCAGTT+TGG | - | chr6_4:31110451-31110470 | Msa0985140:intron | 40.0% | |
| GCTAATGTTGTTAGCAATGC+TGG | + | chr6_4:31110523-31110542 | None:intergenic | 40.0% | |
| ACTTTCCATTTCGGCTTATG+TGG | - | chr6_4:31110575-31110594 | Msa0985140:intron | 40.0% | |
| CACCCACAACACCAAAAGTA+TGG | + | chr6_4:31107812-31107831 | None:intergenic | 45.0% | |
| !! | GACGTTGGGTGTTGTCTTTT+TGG | - | chr6_4:31107908-31107927 | Msa0985140:intron | 45.0% |
| ! | TCGGATGTCACTTGATCACT+AGG | - | chr6_4:31108184-31108203 | Msa0985140:intron | 45.0% |
| GTCGCAGAGAACAGTTAAGA+GGG | + | chr6_4:31108329-31108348 | None:intergenic | 45.0% | |
| AGTCGCAGAGAACAGTTAAG+AGG | + | chr6_4:31108330-31108349 | None:intergenic | 45.0% | |
| TCTCTGCGACTTTCACTTGA+TGG | - | chr6_4:31108339-31108358 | Msa0985140:intron | 45.0% | |
| !! | ACTTGATGGTGTGCGCATTT+CGG | - | chr6_4:31108353-31108372 | Msa0985140:intron | 45.0% |
| ACTATACTGGGCATAGGTGA+AGG | - | chr6_4:31108661-31108680 | Msa0985140:intron | 45.0% | |
| GTGGTGAACTGCATAACAAC+AGG | + | chr6_4:31108999-31109018 | None:intergenic | 45.0% | |
| CACCATAACAGAAATGCAGG+CGG | + | chr6_4:31109021-31109040 | None:intergenic | 45.0% | |
| !! | ACCAGATTTGCTGCTATGTG+TGG | - | chr6_4:31109050-31109069 | Msa0985140:intron | 45.0% |
| AGGCAAAGATCTCAGTTTGG+AGG | - | chr6_4:31110454-31110473 | Msa0985140:intron | 45.0% | |
| GTAATGCTCTCGAGGTTTGT+TGG | + | chr6_4:31110501-31110520 | None:intergenic | 45.0% | |
| CTTTCGAAAGCCAACCTTCA+TGG | - | chr6_4:31110549-31110568 | Msa0985140:intron | 45.0% | |
| GGAAAGTTCTCCATGAAGGT+TGG | + | chr6_4:31110562-31110581 | None:intergenic | 45.0% | |
| CACAACCACCAAACAGATCC+TGG | + | chr6_4:31107704-31107723 | None:intergenic | 50.0% | |
| !! | TCTTTTTGGGAGCTTCGGTG+AGG | - | chr6_4:31107922-31107941 | Msa0985140:intron | 50.0% |
| CAGTCTCCCTGACTCACATT+CGG | + | chr6_4:31108382-31108401 | None:intergenic | 50.0% | |
| TGGGGTTTGTCTCGGATGTT+TGG | - | chr6_4:31108968-31108987 | Msa0985140:intron | 50.0% | |
| GGGGTTTGTCTCGGATGTTT+GGG | - | chr6_4:31108969-31108988 | Msa0985140:intron | 50.0% | |
| CATAACAGAAATGCAGGCGG+TGG | + | chr6_4:31109018-31109037 | None:intergenic | 50.0% | |
| CACCGCCTGCATTTCTGTTA+TGG | - | chr6_4:31109016-31109035 | Msa0985140:intron | 50.0% | |
| GCCACACATAGCAGCAAATC+TGG | + | chr6_4:31109054-31109073 | None:intergenic | 50.0% | |
| ! | CAATGCTGGTAATGCTCTCG+AGG | + | chr6_4:31110509-31110528 | None:intergenic | 50.0% |
| GGTGTCCACATAAGCCGAAA+TGG | + | chr6_4:31110583-31110602 | None:intergenic | 50.0% | |
| CTAAACACGCTTTCCGTCGT+CGG | - | chr6_4:31110624-31110643 | Msa0985140:intron | 50.0% | |
| ATGGACGGATATTCCGACGA+CGG | + | chr6_4:31110640-31110659 | None:intergenic | 50.0% | |
| TGCTGCCAGGATCTGTTTGG+TGG | - | chr6_4:31107696-31107715 | Msa0985140:CDS | 55.0% | |
| !! | GGAGTTTGGTTTGGGGTCTC+TGG | - | chr6_4:31107737-31107756 | Msa0985140:CDS | 55.0% |
| TTGGGGTCTCTGGTGCGTTT+AGG | - | chr6_4:31107747-31107766 | Msa0985140:CDS | 55.0% | |
| TGGGGTCTCTGGTGCGTTTA+GGG | - | chr6_4:31107748-31107767 | Msa0985140:CDS | 55.0% | |
| TTGGGAGCTTCGGTGAGGTA+TGG | - | chr6_4:31107927-31107946 | Msa0985140:intron | 55.0% | |
| ! | TGATGGTGTGCGCATTTCGG+AGG | - | chr6_4:31108356-31108375 | Msa0985140:intron | 55.0% |
| CGCTGCTGCCAGGATCTGTT+TGG | - | chr6_4:31107693-31107712 | Msa0985140:CDS | 60.0% | |
| TCGGAGGCCGAATGTGAGTC+AGG | - | chr6_4:31108372-31108391 | Msa0985140:intron | 60.0% | |
| CGGAGGCCGAATGTGAGTCA+GGG | - | chr6_4:31108373-31108392 | Msa0985140:intron | 60.0% | |
| !! | CACGGCGGTGAGATGATGGA+CGG | + | chr6_4:31110655-31110674 | None:intergenic | 60.0% |
| AGGACACGGCGGTGAGATGA+TGG | + | chr6_4:31110659-31110678 | None:intergenic | 60.0% | |
| ! | TGTTTGCGAGCGCTGCTGCC+AGG | - | chr6_4:31107683-31107702 | Msa0985140:CDS | 65.0% |
| CTATGTGTGGCCTGCGCCTG+TGG | - | chr6_4:31109063-31109082 | Msa0985140:intron | 65.0% | |
| TGCAAGACAGCCACAGGCGC+AGG | + | chr6_4:31109076-31109095 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31107620 | 31110680 | 31107620 | ID=Msa0985140;Name=Msa0985140 |
| chr6_4 | mRNA | 31107620 | 31110680 | 31107620 | ID=Msa0985140-mRNA-1;Parent=Msa0985140;Name=Msa0985140-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.33|0|0|3|0|105 |
| chr6_4 | exon | 31110673 | 31110680 | 31110673 | ID=Msa0985140-mRNA-1:exon:8399;Parent=Msa0985140-mRNA-1 |
| chr6_4 | exon | 31109618 | 31109715 | 31109618 | ID=Msa0985140-mRNA-1:exon:8398;Parent=Msa0985140-mRNA-1 |
| chr6_4 | exon | 31107620 | 31107831 | 31107620 | ID=Msa0985140-mRNA-1:exon:8397;Parent=Msa0985140-mRNA-1 |
| chr6_4 | CDS | 31110673 | 31110680 | 31110673 | ID=Msa0985140-mRNA-1:cds;Parent=Msa0985140-mRNA-1 |
| chr6_4 | CDS | 31109618 | 31109715 | 31109618 | ID=Msa0985140-mRNA-1:cds;Parent=Msa0985140-mRNA-1 |
| chr6_4 | CDS | 31107620 | 31107831 | 31107620 | ID=Msa0985140-mRNA-1:cds;Parent=Msa0985140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
