Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260160 | XP_039687425.1 | 71.429 | 70 | 20 | 0 | 36 | 105 | 12 | 81 | 2.53e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260160 | G7I5Y1 | 71.429 | 70 | 20 | 0 | 36 | 105 | 12 | 81 | 1.21e-23 | 99.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1260150 | Msa1260160 | 0.882135 | 1.342654e-70 | -8.615850e-47 |
| Msa0985130 | Msa1260160 | 0.866441 | 2.844194e-65 | -8.615850e-47 |
| Msa0985140 | Msa1260160 | 0.869770 | 2.412865e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260160 | MtrunA17_Chr1g0155901 | 71.429 | 70 | 20 | 0 | 36 | 105 | 12 | 81 | 4.71e-27 | 98.2 |
| Msa1260160 | MtrunA17_Chr3g0098211 | 47.826 | 69 | 36 | 0 | 35 | 103 | 177 | 245 | 5.99e-15 | 68.9 |
| Msa1260160 | MtrunA17_Chr3g0098211 | 44.118 | 68 | 37 | 1 | 35 | 101 | 13 | 80 | 5.65e-11 | 57.4 |
| Msa1260160 | MtrunA17_Chr7g0270601 | 47.059 | 68 | 36 | 0 | 36 | 103 | 15 | 82 | 7.31e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1260160 | AT3G62200.1 | 44.118 | 68 | 37 | 1 | 36 | 103 | 32 | 98 | 5.59e-11 | 58.2 |
| Msa1260160 | AT3G62210.1 | 41.558 | 77 | 44 | 1 | 27 | 103 | 17 | 92 | 7.29e-11 | 57.4 |
Find 28 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAATTTCCTCTTGATA+TGG | 0.243464 | 8_2:+62035547 | None:intergenic |
| GAATTTCAATGGTGATGATA+TGG | 0.266351 | 8_2:+62033552 | None:intergenic |
| CTTTCGAAAGCCAACCTTCA+TGG | 0.297030 | 8_2:-62033605 | Msa1260160:CDS |
| TAGTTATCAGCAAATGATAT+TGG | 0.331613 | 8_2:-62035572 | Msa1260160:CDS |
| GTGTATATCAGAAACTATAC+TGG | 0.350377 | 8_2:-62035506 | Msa1260160:CDS |
| CCATATCAAGAGGAAATTAA+AGG | 0.363268 | 8_2:-62035547 | Msa1260160:CDS |
| TCATGGAGAACTTTCCATTT+CGG | 0.365997 | 8_2:-62033588 | Msa1260160:CDS |
| AAGGCGAGTTATTGTTTAAT+CGG | 0.366674 | 8_2:-62035528 | Msa1260160:CDS |
| GCTAATGTTGTTAGCAATGC+TGG | 0.418922 | 8_2:+62033634 | None:intergenic |
| GTAATGCTCTCGAGGTTTGT+TGG | 0.430299 | 8_2:+62033656 | None:intergenic |
| ACTTTCCATTTCGGCTTATG+TGG | 0.432252 | 8_2:-62033579 | Msa1260160:CDS |
| GGTGTCCACATAAGCCGAAA+TGG | 0.454459 | 8_2:+62033574 | None:intergenic |
| AAGCGTGTTTAGAATTTCAA+TGG | 0.456503 | 8_2:+62033541 | None:intergenic |
| CTAAACACGCTTTCCGTCGT+CGG | 0.493547 | 8_2:-62033530 | Msa1260160:CDS |
| AGGACACGGCGGTGAGATGA+TGG | 0.495656 | 8_2:+62033498 | None:intergenic |
| AATTTCAATGGTGATGATAT+GGG | 0.499304 | 8_2:+62033553 | None:intergenic |
| GGAAAGTTCTCCATGAAGGT+TGG | 0.532897 | 8_2:+62033595 | None:intergenic |
| CAATGCTGGTAATGCTCTCG+AGG | 0.576756 | 8_2:+62033648 | None:intergenic |
| ACTATACTGGGCATAGGTGA+AGG | 0.586646 | 8_2:-62035493 | Msa1260160:intron |
| TCAGAAACTATACTGGGCAT+AGG | 0.594277 | 8_2:-62035499 | Msa1260160:CDS |
| AAATGGAAAGTTCTCCATGA+AGG | 0.603684 | 8_2:+62033591 | None:intergenic |
| GATATTGGAGCCATATCAAG+AGG | 0.616970 | 8_2:-62035557 | Msa1260160:CDS |
| AGGCAAAGATCTCAGTTTGG+AGG | 0.627657 | 8_2:-62033700 | Msa1260160:intron |
| CACGGCGGTGAGATGATGGA+CGG | 0.668397 | 8_2:+62033502 | None:intergenic |
| TGTATATCAGAAACTATACT+GGG | 0.672895 | 8_2:-62035505 | Msa1260160:CDS |
| TTGAAGTAACTATTAGGACA+CGG | 0.708681 | 8_2:+62033484 | None:intergenic |
| ATGGACGGATATTCCGACGA+CGG | 0.736461 | 8_2:+62033517 | None:intergenic |
| AAGTAACTATTAGGACACGG+CGG | 0.825540 | 8_2:+62033487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAAATAAAATTGATA+AGG | - | chr8_2:62033512-62033531 | Msa1260160:CDS | 10.0% |
| !!! | ATTTTTCTTAATTTGATTTT+TGG | - | chr8_2:62033954-62033973 | Msa1260160:intron | 10.0% |
| !! | AATATAAAAGAACAATAAGT+AGG | + | chr8_2:62034362-62034381 | None:intergenic | 15.0% |
| !!! | TTATTGTTCTTTTATATTTC+TGG | - | chr8_2:62034364-62034383 | Msa1260160:intron | 15.0% |
| !!! | GTTATCTAAAATATTAATGT+TGG | - | chr8_2:62035350-62035369 | Msa1260160:intron | 15.0% |
| !! | TTTATTATAATAGACTTTGA+TGG | + | chr8_2:62035920-62035939 | None:intergenic | 15.0% |
| !!! | TATTGGATCTTTAAAATTGA+TGG | - | chr8_2:62034024-62034043 | Msa1260160:intron | 20.0% |
| !! | TGAATTACTCAACAAAAATT+CGG | - | chr8_2:62034281-62034300 | Msa1260160:intron | 20.0% |
| !! | ATTAATTGATAAGAAATTGC+AGG | + | chr8_2:62035197-62035216 | None:intergenic | 20.0% |
| !! | TGCAATTTCTTATCAATTAA+TGG | - | chr8_2:62035196-62035215 | Msa1260160:intron | 20.0% |
| !! | AAATAAACTTTCTCAGTTAT+AGG | - | chr8_2:62035303-62035322 | Msa1260160:intron | 20.0% |
| ! | AAAATACAACACCAAAAGTA+TGG | + | chr8_2:62033747-62033766 | None:intergenic | 25.0% |
| ! | ACAACATAAACAACATTAAC+AGG | + | chr8_2:62033852-62033871 | None:intergenic | 25.0% |
| !!! | TTCACAATTTGCTATGTTTT+AGG | - | chr8_2:62034000-62034019 | Msa1260160:intron | 25.0% |
| !!! | TTTGCTATGTTTTAGGATAT+TGG | - | chr8_2:62034007-62034026 | Msa1260160:intron | 25.0% |
| ! | ATGTATACCAGAAACATTTA+AGG | + | chr8_2:62034312-62034331 | None:intergenic | 25.0% |
| ! | TAGTTATCAGCAAATGATAT+TGG | - | chr8_2:62034458-62034477 | Msa1260160:intron | 25.0% |
| ! | TGTATATCAGAAACTATACT+GGG | - | chr8_2:62034525-62034544 | Msa1260160:intron | 25.0% |
| !!! | ATTTCCTTTTGCTATTTCTT+TGG | - | chr8_2:62034620-62034639 | Msa1260160:intron | 25.0% |
| !!! | TTTTGCTATTTCTTTGGAAA+GGG | - | chr8_2:62034626-62034645 | Msa1260160:intron | 25.0% |
| ! | CAACATAAGCAAATAATACA+TGG | + | chr8_2:62034770-62034789 | None:intergenic | 25.0% |
| !! | ATTGTATGATCTATCTTTTG+TGG | - | chr8_2:62034824-62034843 | Msa1260160:intron | 25.0% |
| !! | TTGTATGATCTATCTTTTGT+GGG | - | chr8_2:62034825-62034844 | Msa1260160:intron | 25.0% |
| ! | GAGAAATCATATAGACTTAA+TGG | - | chr8_2:62035067-62035086 | Msa1260160:intron | 25.0% |
| ! | ATATAAGAGAGAACAGAATA+AGG | + | chr8_2:62035138-62035157 | None:intergenic | 25.0% |
| ! | TTAGATAACAAAATCCAACA+TGG | + | chr8_2:62035339-62035358 | None:intergenic | 25.0% |
| !!! | AAAATATTAATGTGCCGTTT+TGG | - | chr8_2:62035357-62035376 | Msa1260160:intron | 25.0% |
| !!! | TTTGGATCATTTTTTGTTGA+CGG | - | chr8_2:62035400-62035419 | Msa1260160:intron | 25.0% |
| !! | GTTGGATTTGTTTATAATGA+TGG | - | chr8_2:62035445-62035464 | Msa1260160:intron | 25.0% |
| ! | CAAAAATTCTCACACATAAA+AGG | + | chr8_2:62035487-62035506 | None:intergenic | 25.0% |
| ! | CATTTCAATCATTAGTTAAC+AGG | + | chr8_2:62035808-62035827 | None:intergenic | 25.0% |
| !! | AATTTCAATGGTGATGATAT+GGG | + | chr8_2:62036480-62036499 | None:intergenic | 25.0% |
| !! | GTGTTTTTATGTGTGTATCT+CGG | - | chr8_2:62033646-62033665 | Msa1260160:CDS | 30.0% |
| ! | TTTTTCTGCTTCCATACTTT+TGG | - | chr8_2:62033674-62033693 | Msa1260160:CDS | 30.0% |
| !! | GTGTTTTTATGTGTGTATCT+CGG | - | chr8_2:62033646-62033665 | Msa1260160:CDS | 30.0% |
| ! | TTTTTCTGCTTCCATACTTT+TGG | - | chr8_2:62033674-62033693 | Msa1260160:CDS | 30.0% |
| CAAATTGTGAATCAACTCAT+CGG | + | chr8_2:62033991-62034010 | None:intergenic | 30.0% | |
| TGATGGTAATTTGATTGACT+CGG | - | chr8_2:62034041-62034060 | Msa1260160:intron | 30.0% | |
| TTCAACTAACACAGTATAAC+AGG | + | chr8_2:62034118-62034137 | None:intergenic | 30.0% | |
| ACTGTGTTAGTTGAAGTTAT+TGG | - | chr8_2:62034123-62034142 | Msa1260160:intron | 30.0% | |
| GGTAAAACCTTAAATGTTTC+TGG | - | chr8_2:62034302-62034321 | Msa1260160:intron | 30.0% | |
| ATAAGTAGGAGAAGAAGAAT+AGG | + | chr8_2:62034348-62034367 | None:intergenic | 30.0% | |
| !! | AGAACAAAAAGTACCTTATC+AGG | + | chr8_2:62034395-62034414 | None:intergenic | 30.0% |
| ! | CCTTTAATTTCCTCTTGATA+TGG | + | chr8_2:62034486-62034505 | None:intergenic | 30.0% |
| CCATATCAAGAGGAAATTAA+AGG | - | chr8_2:62034483-62034502 | Msa1260160:intron | 30.0% | |
| AAGGCGAGTTATTGTTTAAT+CGG | - | chr8_2:62034502-62034521 | Msa1260160:intron | 30.0% | |
| GTGTATATCAGAAACTATAC+TGG | - | chr8_2:62034524-62034543 | Msa1260160:intron | 30.0% | |
| CTCTCACTCAATAATACATT+TGG | - | chr8_2:62034580-62034599 | Msa1260160:intron | 30.0% | |
| TCACTCAATAATACATTTGG+TGG | - | chr8_2:62034583-62034602 | Msa1260160:intron | 30.0% | |
| CTTTCCAAAGAAATAGCAAA+AGG | + | chr8_2:62034627-62034646 | None:intergenic | 30.0% | |
| !!! | CTTTTGCTATTTCTTTGGAA+AGG | - | chr8_2:62034625-62034644 | Msa1260160:intron | 30.0% |
| ! | GGGATTAGAATAGTCTTTTA+AGG | - | chr8_2:62034655-62034674 | Msa1260160:intron | 30.0% |
| !! | GCTTTATTTGAGAAGAATAC+TGG | + | chr8_2:62034718-62034737 | None:intergenic | 30.0% |
| ! | GTTTTCAATGCAAATCAAGA+TGG | + | chr8_2:62034740-62034759 | None:intergenic | 30.0% |
| ! | TGTATGATCTATCTTTTGTG+GGG | - | chr8_2:62034826-62034845 | Msa1260160:intron | 30.0% |
| GATAACTTGGAATATTGTTG+AGG | - | chr8_2:62035267-62035286 | Msa1260160:intron | 30.0% | |
| ATAACAAAATCCAACATGGA+AGG | + | chr8_2:62035335-62035354 | None:intergenic | 30.0% | |
| CTCAATTCAAACAACCAAAA+CGG | + | chr8_2:62035374-62035393 | None:intergenic | 30.0% | |
| ! | GTTTGAATTGAGGTATGTTT+TGG | - | chr8_2:62035382-62035401 | Msa1260160:intron | 30.0% |
| ! | TAATGCACTATTTGCTAGAT+AGG | + | chr8_2:62035614-62035633 | None:intergenic | 30.0% |
| ATCATTAGTTAACAGGTCTT+CGG | + | chr8_2:62035801-62035820 | None:intergenic | 30.0% | |
| ATAAAACCAATAAGAAGCAG+AGG | + | chr8_2:62035880-62035899 | None:intergenic | 30.0% | |
| ! | TGCTTGAATATCACTGTTTT+TGG | - | chr8_2:62036186-62036205 | Msa1260160:intron | 30.0% |
| ATGAATGTGGAATATGTGAA+AGG | - | chr8_2:62036310-62036329 | Msa1260160:intron | 30.0% | |
| ! | GAATTTCAATGGTGATGATA+TGG | + | chr8_2:62036481-62036500 | None:intergenic | 30.0% |
| ! | AAGCGTGTTTAGAATTTCAA+TGG | + | chr8_2:62036492-62036511 | None:intergenic | 30.0% |
| TGATGTTATGGAGTTTGGTT+TGG | - | chr8_2:62033604-62033623 | Msa1260160:CDS | 35.0% | |
| ! | GATGTTATGGAGTTTGGTTT+GGG | - | chr8_2:62033605-62033624 | Msa1260160:CDS | 35.0% |
| !! | ATGTTATGGAGTTTGGTTTG+GGG | - | chr8_2:62033606-62033625 | Msa1260160:CDS | 35.0% |
| !!! | TTCCATACTTTTGGTGTTGT+GGG | - | chr8_2:62033683-62033702 | Msa1260160:CDS | 35.0% |
| TTAACAGGCAGAAAACACAA+AGG | + | chr8_2:62033837-62033856 | None:intergenic | 35.0% | |
| ATCCATCATTTCTATGAGGA+TGG | - | chr8_2:62033880-62033899 | Msa1260160:intron | 35.0% | |
| AACCATCCTCATAGAAATGA+TGG | + | chr8_2:62033885-62033904 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCAAAACCTGATA+AGG | - | chr8_2:62034379-62034398 | Msa1260160:intron | 35.0% |
| TTGAGTGAGAGAAGAGATAA+AGG | + | chr8_2:62034571-62034590 | None:intergenic | 35.0% | |
| GAATACTGGCAAGAACAAAT+TGG | + | chr8_2:62034704-62034723 | None:intergenic | 35.0% | |
| ACTTTGTGAAAACTTCTAGC+AGG | - | chr8_2:62035017-62035036 | Msa1260160:intron | 35.0% | |
| ! | GTTGATGAGAGAAGATAACT+TGG | - | chr8_2:62035254-62035273 | Msa1260160:intron | 35.0% |
| !!! | CGTTTTGGTTGTTTGAATTG+AGG | - | chr8_2:62035372-62035391 | Msa1260160:intron | 35.0% |
| ! | GTAGTTTGTATGCTCAATGT+AGG | - | chr8_2:62035696-62035715 | Msa1260160:intron | 35.0% |
| TGAATGATGAATCTGTGCTT+TGG | - | chr8_2:62035969-62035988 | Msa1260160:intron | 35.0% | |
| ACATTCATCTCAAAGAAGTC+TGG | + | chr8_2:62036298-62036317 | None:intergenic | 35.0% | |
| !! | AGACTTCTTTGAGATGAATG+TGG | - | chr8_2:62036297-62036316 | Msa1260160:intron | 35.0% |
| AAATGGAAAGTTCTCCATGA+AGG | + | chr8_2:62036442-62036461 | None:intergenic | 35.0% | |
| TCATGGAGAACTTTCCATTT+CGG | - | chr8_2:62036442-62036461 | Msa1260160:intron | 35.0% | |
| TGGTTGTGCAACTGATGTTA+TGG | - | chr8_2:62033592-62033611 | Msa1260160:CDS | 40.0% | |
| GCAACTGATGTTATGGAGTT+TGG | - | chr8_2:62033599-62033618 | Msa1260160:CDS | 40.0% | |
| !!! | CTTCCATACTTTTGGTGTTG+TGG | - | chr8_2:62033682-62033701 | Msa1260160:CDS | 40.0% |
| TATCTAGAGATAGCTGACGT+TGG | - | chr8_2:62033769-62033788 | Msa1260160:intron | 40.0% | |
| ATCTAGAGATAGCTGACGTT+GGG | - | chr8_2:62033770-62033789 | Msa1260160:intron | 40.0% | |
| !! | ACGTTGGGTGTTGTCTTTTT+GGG | - | chr8_2:62033785-62033804 | Msa1260160:intron | 40.0% |
| !! | TGTTGTCTTTTTGGGAGCTT+CGG | - | chr8_2:62033793-62033812 | Msa1260160:intron | 40.0% |
| GCACATCCATCATTTCTATG+AGG | - | chr8_2:62033876-62033895 | Msa1260160:intron | 40.0% | |
| GATATTGGAGCCATATCAAG+AGG | - | chr8_2:62034473-62034492 | Msa1260160:intron | 40.0% | |
| TCAGAAACTATACTGGGCAT+AGG | - | chr8_2:62034531-62034550 | Msa1260160:intron | 40.0% | |
| ! | TTTCTTTGGAAAGGGTAGTG+AGG | - | chr8_2:62034634-62034653 | Msa1260160:intron | 40.0% |
| ! | TTCTTTGGAAAGGGTAGTGA+GGG | - | chr8_2:62034635-62034654 | Msa1260160:intron | 40.0% |
| ! | ATCTTTTGTGGGGTTTGTCT+CGG | - | chr8_2:62034836-62034855 | Msa1260160:intron | 40.0% |
| TCACACCATAACAGAAATGC+AGG | + | chr8_2:62034900-62034919 | None:intergenic | 40.0% | |
| AAATATTGCAAGACAGCCAC+AGG | + | chr8_2:62034958-62034977 | None:intergenic | 40.0% | |
| TTGTGAAAACTTCTAGCAGG+TGG | - | chr8_2:62035020-62035039 | Msa1260160:intron | 40.0% | |
| ! | TAGGATTTTGCCTTCCATGT+TGG | - | chr8_2:62035322-62035341 | Msa1260160:intron | 40.0% |
| AATGCATGCTCAAAGACAAC+TGG | - | chr8_2:62035824-62035843 | Msa1260160:intron | 40.0% | |
| GATGATCCTCTGCTTCTTAT+TGG | - | chr8_2:62035871-62035890 | Msa1260160:intron | 40.0% | |
| ! | TCAAAGAAGTCTGGTTCGAA+TGG | + | chr8_2:62036289-62036308 | None:intergenic | 40.0% |
| GAAAGGCAAAGATCTCAGTT+TGG | - | chr8_2:62036327-62036346 | Msa1260160:intron | 40.0% | |
| GCTAATGTTGTTAGCAATGC+TGG | + | chr8_2:62036399-62036418 | None:intergenic | 40.0% | |
| ACTTTCCATTTCGGCTTATG+TGG | - | chr8_2:62036451-62036470 | Msa1260160:intron | 40.0% | |
| CACCCACAACACCAAAAGTA+TGG | + | chr8_2:62033688-62033707 | None:intergenic | 45.0% | |
| !! | GACGTTGGGTGTTGTCTTTT+TGG | - | chr8_2:62033784-62033803 | Msa1260160:intron | 45.0% |
| ! | TCGGATGTCACTTGATCACT+AGG | - | chr8_2:62034060-62034079 | Msa1260160:intron | 45.0% |
| GTCGCAGAGAACAGTTAAGA+GGG | + | chr8_2:62034205-62034224 | None:intergenic | 45.0% | |
| AGTCGCAGAGAACAGTTAAG+AGG | + | chr8_2:62034206-62034225 | None:intergenic | 45.0% | |
| TCTCTGCGACTTTCACTTGA+TGG | - | chr8_2:62034215-62034234 | Msa1260160:intron | 45.0% | |
| !! | ACTTGATGGTGTGCGCATTT+CGG | - | chr8_2:62034229-62034248 | Msa1260160:intron | 45.0% |
| ACTATACTGGGCATAGGTGA+AGG | - | chr8_2:62034537-62034556 | Msa1260160:intron | 45.0% | |
| GTGGTGAACTGCATAACAAC+AGG | + | chr8_2:62034875-62034894 | None:intergenic | 45.0% | |
| CACCATAACAGAAATGCAGG+CGG | + | chr8_2:62034897-62034916 | None:intergenic | 45.0% | |
| !! | ACCAGATTTGCTGCTATGTG+TGG | - | chr8_2:62034926-62034945 | Msa1260160:intron | 45.0% |
| AGGCAAAGATCTCAGTTTGG+AGG | - | chr8_2:62036330-62036349 | Msa1260160:intron | 45.0% | |
| GTAATGCTCTCGAGGTTTGT+TGG | + | chr8_2:62036377-62036396 | None:intergenic | 45.0% | |
| CTTTCGAAAGCCAACCTTCA+TGG | - | chr8_2:62036425-62036444 | Msa1260160:intron | 45.0% | |
| GGAAAGTTCTCCATGAAGGT+TGG | + | chr8_2:62036438-62036457 | None:intergenic | 45.0% | |
| CACAACCACCAAACAGATCC+TGG | + | chr8_2:62033580-62033599 | None:intergenic | 50.0% | |
| !! | TCTTTTTGGGAGCTTCGGTG+AGG | - | chr8_2:62033798-62033817 | Msa1260160:intron | 50.0% |
| CAGTCTCCCTGACTCACATT+CGG | + | chr8_2:62034258-62034277 | None:intergenic | 50.0% | |
| TGGGGTTTGTCTCGGATGTT+TGG | - | chr8_2:62034844-62034863 | Msa1260160:intron | 50.0% | |
| GGGGTTTGTCTCGGATGTTT+GGG | - | chr8_2:62034845-62034864 | Msa1260160:intron | 50.0% | |
| CATAACAGAAATGCAGGCGG+TGG | + | chr8_2:62034894-62034913 | None:intergenic | 50.0% | |
| CACCGCCTGCATTTCTGTTA+TGG | - | chr8_2:62034892-62034911 | Msa1260160:intron | 50.0% | |
| GCCACACATAGCAGCAAATC+TGG | + | chr8_2:62034930-62034949 | None:intergenic | 50.0% | |
| ! | CAATGCTGGTAATGCTCTCG+AGG | + | chr8_2:62036385-62036404 | None:intergenic | 50.0% |
| GGTGTCCACATAAGCCGAAA+TGG | + | chr8_2:62036459-62036478 | None:intergenic | 50.0% | |
| CTAAACACGCTTTCCGTCGT+CGG | - | chr8_2:62036500-62036519 | Msa1260160:intron | 50.0% | |
| ATGGACGGATATTCCGACGA+CGG | + | chr8_2:62036516-62036535 | None:intergenic | 50.0% | |
| TGCTGCCAGGATCTGTTTGG+TGG | - | chr8_2:62033572-62033591 | Msa1260160:CDS | 55.0% | |
| !! | GGAGTTTGGTTTGGGGTCTC+TGG | - | chr8_2:62033613-62033632 | Msa1260160:CDS | 55.0% |
| TTGGGGTCTCTGGTGCGTTT+AGG | - | chr8_2:62033623-62033642 | Msa1260160:CDS | 55.0% | |
| TGGGGTCTCTGGTGCGTTTA+GGG | - | chr8_2:62033624-62033643 | Msa1260160:CDS | 55.0% | |
| TTGGGAGCTTCGGTGAGGTA+TGG | - | chr8_2:62033803-62033822 | Msa1260160:intron | 55.0% | |
| ! | TGATGGTGTGCGCATTTCGG+AGG | - | chr8_2:62034232-62034251 | Msa1260160:intron | 55.0% |
| CGCTGCTGCCAGGATCTGTT+TGG | - | chr8_2:62033569-62033588 | Msa1260160:CDS | 60.0% | |
| TCGGAGGCCGAATGTGAGTC+AGG | - | chr8_2:62034248-62034267 | Msa1260160:intron | 60.0% | |
| CGGAGGCCGAATGTGAGTCA+GGG | - | chr8_2:62034249-62034268 | Msa1260160:intron | 60.0% | |
| !! | CACGGCGGTGAGATGATGGA+CGG | + | chr8_2:62036531-62036550 | None:intergenic | 60.0% |
| AGGACACGGCGGTGAGATGA+TGG | + | chr8_2:62036535-62036554 | None:intergenic | 60.0% | |
| ! | TGTTTGCGAGCGCTGCTGCC+AGG | - | chr8_2:62033559-62033578 | Msa1260160:CDS | 65.0% |
| CTATGTGTGGCCTGCGCCTG+TGG | - | chr8_2:62034939-62034958 | Msa1260160:intron | 65.0% | |
| TGCAAGACAGCCACAGGCGC+AGG | + | chr8_2:62034952-62034971 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 62033496 | 62036556 | 62033496 | ID=Msa1260160;Name=Msa1260160 |
| chr8_2 | mRNA | 62033496 | 62036556 | 62033496 | ID=Msa1260160-mRNA-1;Parent=Msa1260160;Name=Msa1260160-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.33|0.5|0.66|3|0|105 |
| chr8_2 | exon | 62036549 | 62036556 | 62036549 | ID=Msa1260160-mRNA-1:exon:19681;Parent=Msa1260160-mRNA-1 |
| chr8_2 | exon | 62035494 | 62035591 | 62035494 | ID=Msa1260160-mRNA-1:exon:19680;Parent=Msa1260160-mRNA-1 |
| chr8_2 | exon | 62033496 | 62033707 | 62033496 | ID=Msa1260160-mRNA-1:exon:19679;Parent=Msa1260160-mRNA-1 |
| chr8_2 | CDS | 62036549 | 62036556 | 62036549 | ID=Msa1260160-mRNA-1:cds;Parent=Msa1260160-mRNA-1 |
| chr8_2 | CDS | 62035494 | 62035591 | 62035494 | ID=Msa1260160-mRNA-1:cds;Parent=Msa1260160-mRNA-1 |
| chr8_2 | CDS | 62033496 | 62033707 | 62033496 | ID=Msa1260160-mRNA-1:cds;Parent=Msa1260160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
