Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988610 | XP_013452197.1 | 92.994 | 157 | 11 | 0 | 1 | 157 | 1 | 157 | 6.44e-104 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988610 | sp|Q6PBM8|RBM18_DANRE | 39.416 | 137 | 71 | 3 | 13 | 143 | 23 | 153 | 6.10e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988610 | G7JDR6 | 92.994 | 157 | 11 | 0 | 1 | 157 | 1 | 157 | 3.07e-104 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0988610 | Msa1012830 | 0.809035 | 2.308672e-50 | -8.615850e-47 |
| Msa0874500 | Msa0988610 | 0.816743 | 4.725883e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988610 | MtrunA17_Chr6g0468671 | 92.994 | 157 | 11 | 0 | 1 | 157 | 1 | 157 | 5.92e-108 | 304 |
| Msa0988610 | MtrunA17_Chr6g0472291 | 92.357 | 157 | 12 | 0 | 1 | 157 | 1 | 157 | 3.08e-106 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988610 | AT5G52545.2 | 65.806 | 155 | 50 | 3 | 1 | 152 | 1 | 155 | 6.00e-69 | 206 |
| Msa0988610 | AT5G52545.1 | 50.633 | 79 | 36 | 3 | 77 | 152 | 1 | 79 | 4.48e-17 | 71.6 |
| Msa0988610 | AT1G71770.1 | 39.744 | 78 | 43 | 1 | 15 | 92 | 344 | 417 | 3.17e-11 | 60.8 |
| Msa0988610 | AT1G71770.2 | 39.744 | 78 | 43 | 1 | 15 | 92 | 344 | 417 | 3.17e-11 | 60.8 |
Find 50 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCGTGGCTCCCCACGTTT+TGG | 0.222599 | 6_4:+42884462 | None:intergenic |
| TAGAGCTATCTGCCATTTCC+AGG | 0.303824 | 6_4:+42884210 | None:intergenic |
| GTTGGCTGAAGAAAGGAATT+AGG | 0.304697 | 6_4:+42887176 | None:intergenic |
| TTCTTCAATCTTCTTAAATT+CGG | 0.310111 | 6_4:-42887142 | Msa0988610:intron |
| ATAGTAAAATCTGTATAATC+AGG | 0.341841 | 6_4:-42884014 | Msa0988610:three_prime_UTR |
| GAGAATGCAGGAAGCAATAT+TGG | 0.366295 | 6_4:-42884306 | Msa0988610:intron |
| GCATCTCACCGGTGGTGGCA+TGG | 0.422263 | 6_4:-42884159 | Msa0988610:CDS |
| TGAGAGGTACGCCCTGGAAA+TGG | 0.439736 | 6_4:-42884222 | Msa0988610:CDS |
| GTTAGCTTGCAGCCGGCCAT+TGG | 0.443473 | 6_4:-42884261 | Msa0988610:CDS |
| CCATTGGTTGTTCGCCTAGC+GGG | 0.454571 | 6_4:-42884245 | Msa0988610:CDS |
| CATCTCACCGGTGGTGGCAT+GGG | 0.456694 | 6_4:-42884158 | Msa0988610:CDS |
| TACTTGAAGTTTCACTCGCC+TGG | 0.459212 | 6_4:-42886034 | Msa0988610:five_prime_UTR |
| TTATCATCAACATAACCATT+AGG | 0.464565 | 6_4:+42885118 | None:intergenic |
| AACGTTGGTTGGCTGAAGAA+AGG | 0.474093 | 6_4:+42887169 | None:intergenic |
| TACTGAATGCAGGATCCTAA+TGG | 0.501601 | 6_4:-42885133 | Msa0988610:intron |
| CACACACGTGGCCCAAAACG+TGG | 0.518642 | 6_4:-42884474 | Msa0988610:CDS |
| CCCGCTAGGCGAACAACCAA+TGG | 0.543939 | 6_4:+42884245 | None:intergenic |
| ACGGGAGGTTAGCTTGCAGC+CGG | 0.544159 | 6_4:-42884268 | Msa0988610:CDS |
| TAGTAAAATCTGTATAATCA+GGG | 0.551897 | 6_4:-42884013 | Msa0988610:three_prime_UTR |
| TCGGACACGATCTTTCCATA+AGG | 0.558347 | 6_4:+42884510 | None:intergenic |
| CATCCAGTACAGCACAAAAG+AGG | 0.560335 | 6_4:-42884430 | Msa0988610:intron |
| CGTCTGTCCCATGCCACCAC+CGG | 0.562460 | 6_4:+42884151 | None:intergenic |
| AAGTTGCATCTCACCGGTGG+TGG | 0.562822 | 6_4:-42884164 | Msa0988610:CDS |
| TCTACAAAAGCAGTAAGTGA+AGG | 0.575133 | 6_4:-42884191 | Msa0988610:CDS |
| GACTTCTTGTGGCACACACG+TGG | 0.575537 | 6_4:-42884486 | Msa0988610:CDS |
| GGGTACAAGTTGCATCTCAC+CGG | 0.575680 | 6_4:-42884170 | Msa0988610:CDS |
| GGGCGTACCTCTCACCCGCT+AGG | 0.578218 | 6_4:+42884231 | None:intergenic |
| AGATTGAAGAATTGAAACGT+TGG | 0.586059 | 6_4:+42887154 | None:intergenic |
| AGAGCTATCTGCCATTTCCA+GGG | 0.587798 | 6_4:+42884211 | None:intergenic |
| CTACAAAAGCAGTAAGTGAA+GGG | 0.591895 | 6_4:-42884190 | Msa0988610:CDS |
| GCAGGAAGCAATATTGGCCA+AGG | 0.594263 | 6_4:-42884300 | Msa0988610:intron |
| ACATACCATGACAGAAAACC+AGG | 0.596667 | 6_4:+42886016 | None:intergenic |
| TGAAGAATTGAAACGTTGGT+TGG | 0.600420 | 6_4:+42887158 | None:intergenic |
| CAAGTTGAAGTCTTTAGACG+AGG | 0.610291 | 6_4:-42884096 | Msa0988610:CDS |
| TTGGCCAAGGAGAAAATGCA+CGG | 0.610739 | 6_4:-42884287 | Msa0988610:CDS |
| TTGTTCGCCTAGCGGGTGAG+AGG | 0.610821 | 6_4:-42884238 | Msa0988610:CDS |
| AGTAAAATCTGTATAATCAG+GGG | 0.612066 | 6_4:-42884012 | Msa0988610:three_prime_UTR |
| GCCATTGGTTGTTCGCCTAG+CGG | 0.612857 | 6_4:-42884246 | Msa0988610:CDS |
| ACACACGTGGCCCAAAACGT+GGG | 0.630705 | 6_4:-42884473 | Msa0988610:CDS |
| CACACGTGGCCCAAAACGTG+GGG | 0.647123 | 6_4:-42884472 | Msa0988610:CDS |
| TTATGGAAAGATCGTGTCCG+AGG | 0.648307 | 6_4:-42884508 | Msa0988610:CDS |
| ATAATCAGGGGAATATTCTG+TGG | 0.652046 | 6_4:-42884000 | Msa0988610:three_prime_UTR |
| TACAAGTTGCATCTCACCGG+TGG | 0.652327 | 6_4:-42884167 | Msa0988610:CDS |
| TGGCCAAGGAGAAAATGCAC+GGG | 0.653042 | 6_4:-42884286 | Msa0988610:CDS |
| CCAAGGAGAAAATGCACGGG+AGG | 0.653493 | 6_4:-42884283 | Msa0988610:CDS |
| TCGTGTCCGAGGACTTCTTG+TGG | 0.660976 | 6_4:-42884497 | Msa0988610:CDS |
| TGTGAAAATAGACTCTACGT+TGG | 0.685631 | 6_4:-42885094 | Msa0988610:CDS |
| TGTGTGCCACAAGAAGTCCT+CGG | 0.700417 | 6_4:+42884491 | None:intergenic |
| CCAAAACGTGGGGAGCCACG+CGG | 0.716629 | 6_4:-42884462 | Msa0988610:CDS |
| TGGATGAAAGCGAAACCGCG+TGG | 0.757806 | 6_4:+42884447 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAAAATAAAAAAT+TGG | + | chr6_4:42884203-42884222 | None:intergenic | 0.0% |
| !!! | TTTGTTTTGAAATTTTATTT+TGG | - | chr6_4:42884118-42884137 | Msa0988610:CDS | 10.0% |
| !!! | TTGTTTTGAAATTTTATTTT+GGG | - | chr6_4:42884119-42884138 | Msa0988610:CDS | 10.0% |
| !!! | GCTTATTTTTTATATATTTT+TGG | - | chr6_4:42886140-42886159 | Msa0988610:intron | 10.0% |
| !!! | TCATTTTGTTTAATTGTATT+GGG | - | chr6_4:42884072-42884091 | Msa0988610:CDS | 15.0% |
| !!! | AATTTTCAATTTTGCAAAAT+GGG | + | chr6_4:42884171-42884190 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTTTGCAAAA+TGG | + | chr6_4:42884172-42884191 | None:intergenic | 15.0% |
| !! | TGATTTAAATATTCATTGTT+AGG | - | chr6_4:42885638-42885657 | Msa0988610:intron | 15.0% |
| !! | CAAAATATGAATTTATCTAT+GGG | + | chr6_4:42885910-42885929 | None:intergenic | 15.0% |
| !! | TCAAAATATGAATTTATCTA+TGG | + | chr6_4:42885911-42885930 | None:intergenic | 15.0% |
| !! | TTCTTCAATCTTCTTAAATT+CGG | - | chr6_4:42884019-42884038 | Msa0988610:three_prime_UTR | 20.0% |
| !!! | CTCATTTTGTTTAATTGTAT+TGG | - | chr6_4:42884071-42884090 | Msa0988610:CDS | 20.0% |
| !!! | ATTTTTATTTTTGGTGAATG+TGG | - | chr6_4:42884252-42884271 | Msa0988610:CDS | 20.0% |
| !!! | ATGTAAAGACTTGATTTTTA+TGG | - | chr6_4:42885057-42885076 | Msa0988610:intron | 20.0% |
| !!! | TTATCAAAAGTATCTCAATT+AGG | + | chr6_4:42885392-42885411 | None:intergenic | 20.0% |
| !!! | TTCTTTTTACAAACATTTTC+CGG | + | chr6_4:42885835-42885854 | None:intergenic | 20.0% |
| !! | TATTGTTAATGATGGTATAT+CGG | + | chr6_4:42885860-42885879 | None:intergenic | 20.0% |
| !! | ATAGTAAAATCTGTATAATC+AGG | - | chr6_4:42887147-42887166 | Msa0988610:five_prime_UTR | 20.0% |
| !! | TAGTAAAATCTGTATAATCA+GGG | - | chr6_4:42887148-42887167 | Msa0988610:five_prime_UTR | 20.0% |
| ! | GTATTGGGTTTAAATGAAAT+TGG | - | chr6_4:42884087-42884106 | Msa0988610:CDS | 25.0% |
| !!! | CTTCAATTTTGAGTTATTAC+CGG | + | chr6_4:42884420-42884439 | None:intergenic | 25.0% |
| !! | TTGTCATAAGTTTTCCAATT+AGG | - | chr6_4:42885333-42885352 | Msa0988610:intron | 25.0% |
| ! | TACATAAAAAGAGACCTAAT+TGG | + | chr6_4:42885350-42885369 | None:intergenic | 25.0% |
| ! | GAGAATTTCTTACAAAGATT+TGG | - | chr6_4:42885457-42885476 | Msa0988610:intron | 25.0% |
| ! | TACTATTCATAGTATTAGAC+GGG | + | chr6_4:42885681-42885700 | None:intergenic | 25.0% |
| ! | GTACTATTCATAGTATTAGA+CGG | + | chr6_4:42885682-42885701 | None:intergenic | 25.0% |
| ! | ATTTGTAGAAAAACCTCTAT+TGG | - | chr6_4:42885809-42885828 | Msa0988610:intron | 25.0% |
| ! | TGTTGTTGTATTGTTAATGA+TGG | + | chr6_4:42885868-42885887 | None:intergenic | 25.0% |
| ! | TTATCATCAACATAACCATT+AGG | + | chr6_4:42886046-42886065 | None:intergenic | 25.0% |
| ! | ATAAAAAATAAGCCATGTTG+AGG | + | chr6_4:42886133-42886152 | None:intergenic | 25.0% |
| ! | AAAAACAGCACTTAATACAT+TGG | + | chr6_4:42886249-42886268 | None:intergenic | 25.0% |
| ! | AAGAATATGCATATAGTACA+AGG | + | chr6_4:42886575-42886594 | None:intergenic | 25.0% |
| ! | AGTAAAATCTGTATAATCAG+GGG | - | chr6_4:42887149-42887168 | Msa0988610:five_prime_UTR | 25.0% |
| AGATTGAAGAATTGAAACGT+TGG | + | chr6_4:42884010-42884029 | None:intergenic | 30.0% | |
| TGTCTTTGTGATAGTTGTAT+AGG | - | chr6_4:42884349-42884368 | Msa0988610:intron | 30.0% | |
| ! | TTTTCTTAGAAAACGTGGTT+GGG | - | chr6_4:42884504-42884523 | Msa0988610:CDS | 30.0% |
| TGACAATGTGTTTATAAGTG+GGG | + | chr6_4:42884616-42884635 | None:intergenic | 30.0% | |
| CTGACAATGTGTTTATAAGT+GGG | + | chr6_4:42884617-42884636 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | + | chr6_4:42884616-42884635 | None:intergenic | 30.0% | |
| CTGACAATGTGTTTATAAGT+GGG | + | chr6_4:42884617-42884636 | None:intergenic | 30.0% | |
| TAAAGAGCAAACCATCAAAT+TGG | - | chr6_4:42885270-42885289 | Msa0988610:intron | 30.0% | |
| GAGAATTTCTTACGAATACA+GGG | + | chr6_4:42885297-42885316 | None:intergenic | 30.0% | |
| TGAGAATTTCTTACGAATAC+AGG | + | chr6_4:42885298-42885317 | None:intergenic | 30.0% | |
| TGGAAAACTTATGACAAAGA+CGG | + | chr6_4:42885330-42885349 | None:intergenic | 30.0% | |
| TACAAAGATTTGGACCAATT+TGG | - | chr6_4:42885467-42885486 | Msa0988610:intron | 30.0% | |
| AATAGTACACTTGTGTTTGT+GGG | - | chr6_4:42885694-42885713 | Msa0988610:intron | 30.0% | |
| !!! | CTGTTTTTGATCTGTCAATA+CGG | - | chr6_4:42885729-42885748 | Msa0988610:intron | 30.0% |
| TAGTATCTAAATTGATCGAG+TGG | - | chr6_4:42885956-42885975 | Msa0988610:intron | 30.0% | |
| TTTCCCATCTCAATTTATTG+TGG | - | chr6_4:42885988-42886007 | Msa0988610:intron | 30.0% | |
| GTTCCACAATAAATTGAGAT+GGG | + | chr6_4:42885994-42886013 | None:intergenic | 30.0% | |
| AGTTCCACAATAAATTGAGA+TGG | + | chr6_4:42885995-42886014 | None:intergenic | 30.0% | |
| TTTCATGTATTACTGAATGC+AGG | - | chr6_4:42886018-42886037 | Msa0988610:intron | 30.0% | |
| AACGCTAATATTACTTGTGA+AGG | - | chr6_4:42886165-42886184 | Msa0988610:intron | 30.0% | |
| ! | AAGTGTGCATTGAAAAGTAT+AGG | - | chr6_4:42886211-42886230 | Msa0988610:intron | 30.0% |
| TCGATTTCTTAAAGCATGTT+TGG | - | chr6_4:42886290-42886309 | Msa0988610:intron | 30.0% | |
| ACCTATATTTGAATCTCTCT+TGG | + | chr6_4:42886366-42886385 | None:intergenic | 30.0% | |
| ATAACTATTGCCATGACAAA+CGG | - | chr6_4:42886419-42886438 | Msa0988610:intron | 30.0% | |
| ! | CATCAAAAACCTAGATTTTG+TGG | - | chr6_4:42886528-42886547 | Msa0988610:intron | 30.0% |
| ! | CTCAAAATGTTTTCTCCTTA+TGG | - | chr6_4:42886636-42886655 | Msa0988610:intron | 30.0% |
| !! | ACCTCATTTATTTCTATGGA+CGG | + | chr6_4:42886772-42886791 | None:intergenic | 30.0% |
| !! | ACGTACCTCATTTATTTCTA+TGG | + | chr6_4:42886776-42886795 | None:intergenic | 30.0% |
| TGAAGAATTGAAACGTTGGT+TGG | + | chr6_4:42884006-42884025 | None:intergenic | 35.0% | |
| ATGTAACTACATGTGCATGT+CGG | - | chr6_4:42884447-42884466 | Msa0988610:CDS | 35.0% | |
| ! | CTTTTCTTAGAAAACGTGGT+TGG | - | chr6_4:42884503-42884522 | Msa0988610:CDS | 35.0% |
| GACAATGTGTTTATAAGTGG+GGG | + | chr6_4:42884615-42884634 | None:intergenic | 35.0% | |
| CCTGACAATGTGTTTATAAG+TGG | + | chr6_4:42884618-42884637 | None:intergenic | 35.0% | |
| CCACTTATAAACACATTGTC+AGG | - | chr6_4:42884615-42884634 | Msa0988610:intron | 35.0% | |
| TGATACCATCTTAGAAAACG+TGG | - | chr6_4:42884777-42884796 | Msa0988610:intron | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | + | chr6_4:42884615-42884634 | None:intergenic | 35.0% | |
| CCTGACAATGTGTTTATAAG+TGG | + | chr6_4:42884618-42884637 | None:intergenic | 35.0% | |
| CCACTTATAAACACATTGTC+AGG | - | chr6_4:42884615-42884634 | Msa0988610:intron | 35.0% | |
| AAAACAGCATGTTCACAAAG+AGG | + | chr6_4:42885030-42885049 | None:intergenic | 35.0% | |
| ATGGTTGATCTTTCATTTGC+AGG | - | chr6_4:42885076-42885095 | Msa0988610:CDS | 35.0% | |
| TGGTTGATCTTTCATTTGCA+GGG | - | chr6_4:42885077-42885096 | Msa0988610:CDS | 35.0% | |
| CATAGTGCATTGTAGAACAA+TGG | + | chr6_4:42885245-42885264 | None:intergenic | 35.0% | |
| TGTTCTACAATGCACTATGT+AGG | - | chr6_4:42885246-42885265 | Msa0988610:intron | 35.0% | |
| ATGTATTTGTGCCATGACAT+AGG | - | chr6_4:42885365-42885384 | Msa0988610:intron | 35.0% | |
| AAAGATTTGGACCAATTTGG+TGG | - | chr6_4:42885470-42885489 | Msa0988610:intron | 35.0% | |
| TTCAGTACAACACTATAGTG+CGG | + | chr6_4:42885536-42885555 | None:intergenic | 35.0% | |
| TCATAGTATTAGACGGGAAA+AGG | + | chr6_4:42885675-42885694 | None:intergenic | 35.0% | |
| GAATAGTACACTTGTGTTTG+TGG | - | chr6_4:42885693-42885712 | Msa0988610:intron | 35.0% | |
| ACAGATCAAAAACAGCACAA+AGG | + | chr6_4:42885724-42885743 | None:intergenic | 35.0% | |
| ATATACACAACGCTTAGACA+AGG | + | chr6_4:42885759-42885778 | None:intergenic | 35.0% | |
| TGTGAAAATAGACTCTACGT+TGG | - | chr6_4:42886067-42886086 | Msa0988610:intron | 35.0% | |
| !! | TTACTTGTGAAGGCTTGTTA+AGG | - | chr6_4:42886175-42886194 | Msa0988610:intron | 35.0% |
| ! | GCTTGTTAAGGAATCAAAGA+TGG | - | chr6_4:42886187-42886206 | Msa0988610:intron | 35.0% |
| GCCAAGAGAGATTCAAATAT+AGG | - | chr6_4:42886362-42886381 | Msa0988610:intron | 35.0% | |
| AAGTTTGGATTTCTGATCTG+AGG | + | chr6_4:42886396-42886415 | None:intergenic | 35.0% | |
| GGCAATAGTTATTGCAAGTT+TGG | + | chr6_4:42886411-42886430 | None:intergenic | 35.0% | |
| CAATTGCATCATGATATGAC+TGG | - | chr6_4:42886479-42886498 | Msa0988610:intron | 35.0% | |
| ! | AATGATGGAAACAGAGAAAG+AGG | + | chr6_4:42886600-42886619 | None:intergenic | 35.0% |
| TCCGTCCATAGAAATAAATG+AGG | - | chr6_4:42886768-42886787 | Msa0988610:intron | 35.0% | |
| ! | CTGCATTCTCACTTTAAGAA+TGG | + | chr6_4:42886845-42886864 | None:intergenic | 35.0% |
| CATTCTTAAAGTGAGAATGC+AGG | - | chr6_4:42886843-42886862 | Msa0988610:intron | 35.0% | |
| TCTACAAAAGCAGTAAGTGA+AGG | - | chr6_4:42886970-42886989 | Msa0988610:intron | 35.0% | |
| CTACAAAAGCAGTAAGTGAA+GGG | - | chr6_4:42886971-42886990 | Msa0988610:intron | 35.0% | |
| ATAATCAGGGGAATATTCTG+TGG | - | chr6_4:42887161-42887180 | Msa0988610:five_prime_UTR | 35.0% | |
| GTTGGCTGAAGAAAGGAATT+AGG | + | chr6_4:42883988-42884007 | None:intergenic | 40.0% | |
| ! | CGCACTTTTCTTAGAAAACG+TGG | - | chr6_4:42884499-42884518 | Msa0988610:CDS | 40.0% |
| CTAACACAACCCTACAAAAC+CGG | - | chr6_4:42884571-42884590 | Msa0988610:intron | 40.0% | |
| ACCATCTTAGAAAACGTGGT+TGG | - | chr6_4:42884781-42884800 | Msa0988610:intron | 40.0% | |
| CCATCTTAGAAAACGTGGTT+GGG | - | chr6_4:42884782-42884801 | Msa0988610:intron | 40.0% | |
| CTAACACAACCCTACAAAAC+CGG | - | chr6_4:42884571-42884590 | Msa0988610:intron | 40.0% | |
| AGTTGTTAAGAGTCCCACAT+CGG | + | chr6_4:42884930-42884949 | None:intergenic | 40.0% | |
| ACATACCATGACAGAAAACC+AGG | + | chr6_4:42885148-42885167 | None:intergenic | 40.0% | |
| GAATACAGGGACCAATTTGA+TGG | + | chr6_4:42885284-42885303 | None:intergenic | 40.0% | |
| CTCAATTAGGTCCTATGTCA+TGG | + | chr6_4:42885379-42885398 | None:intergenic | 40.0% | |
| TGGGGTAAACTACAAAGTGT+TGG | - | chr6_4:42885501-42885520 | Msa0988610:intron | 40.0% | |
| !! | GGTAAACTACAAAGTGTTGG+TGG | - | chr6_4:42885504-42885523 | Msa0988610:intron | 40.0% |
| GAAAGCAATGCTGTCAATTG+CGG | + | chr6_4:42885592-42885611 | None:intergenic | 40.0% | |
| GTAGAAAAACCTCTATTGGC+CGG | - | chr6_4:42885813-42885832 | Msa0988610:intron | 40.0% | |
| ! | AAACATTTTCCGGCCAATAG+AGG | + | chr6_4:42885825-42885844 | None:intergenic | 40.0% |
| TACTGAATGCAGGATCCTAA+TGG | - | chr6_4:42886028-42886047 | Msa0988610:five_prime_UTR | 40.0% | |
| TGTATTCGTGACCATGATTG+AGG | + | chr6_4:42886510-42886529 | None:intergenic | 40.0% | |
| ACAAGGAAAAGAAACCGAAC+AGG | + | chr6_4:42886558-42886577 | None:intergenic | 40.0% | |
| GAGAATGCAGGAAGCAATAT+TGG | - | chr6_4:42886855-42886874 | Msa0988610:intron | 40.0% | |
| ! | CAAGTTGAAGTCTTTAGACG+AGG | - | chr6_4:42887065-42887084 | Msa0988610:intron | 40.0% |
| ! | AACGTTGGTTGGCTGAAGAA+AGG | + | chr6_4:42883995-42884014 | None:intergenic | 45.0% |
| CTAACACAACCCCACAAAAC+CGG | - | chr6_4:42884528-42884547 | Msa0988610:CDS | 45.0% | |
| !! | CGGTTTTGTAGGGTTGTGTT+AGG | + | chr6_4:42884573-42884592 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | + | chr6_4:42884652-42884671 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | - | chr6_4:42884695-42884714 | Msa0988610:intron | 45.0% |
| TGGTTCGTGGACATAAATGG+TGG | - | chr6_4:42884698-42884717 | Msa0988610:intron | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | - | chr6_4:42884699-42884718 | Msa0988610:intron | 45.0% | |
| AAGCCTCTCCAAGATCCATT+GGG | + | chr6_4:42884757-42884776 | None:intergenic | 45.0% | |
| AAAGCCTCTCCAAGATCCAT+TGG | + | chr6_4:42884758-42884777 | None:intergenic | 45.0% | |
| !! | CCCAACCACGTTTTCTAAGA+TGG | + | chr6_4:42884507-42884526 | None:intergenic | 45.0% |
| CTAACACAACCCCACAAAAC+CGG | - | chr6_4:42884528-42884547 | Msa0988610:CDS | 45.0% | |
| !! | CGGTTTTGTAGGGTTGTGTT+AGG | + | chr6_4:42884573-42884592 | None:intergenic | 45.0% |
| TTAAGAGTCCCACATCGGAT+AGG | + | chr6_4:42884647-42884666 | None:intergenic | 45.0% | |
| TACTTGAAGTTTCACTCGCC+TGG | - | chr6_4:42885127-42885146 | Msa0988610:intron | 45.0% | |
| !! | CAATTTGGTGGTTTGCTCGT+GGG | - | chr6_4:42885482-42885501 | Msa0988610:intron | 45.0% |
| !! | AATTTGGTGGTTTGCTCGTG+GGG | - | chr6_4:42885483-42885502 | Msa0988610:intron | 45.0% |
| ACAGGTGTGCCACAAAATCT+AGG | + | chr6_4:42886540-42886559 | None:intergenic | 45.0% | |
| ! | GATTTTGTGGCACACCTGTT+CGG | - | chr6_4:42886541-42886560 | Msa0988610:intron | 45.0% |
| !! | AGAGCAGCTCTGGAAAATGA+TGG | + | chr6_4:42886615-42886634 | None:intergenic | 45.0% |
| TCGGACACGATCTTTCCATA+AGG | + | chr6_4:42886654-42886673 | None:intergenic | 45.0% | |
| TTATGGAAAGATCGTGTCCG+AGG | - | chr6_4:42886653-42886672 | Msa0988610:intron | 45.0% | |
| CATCCAGTACAGCACAAAAG+AGG | - | chr6_4:42886731-42886750 | Msa0988610:intron | 45.0% | |
| ! | GTACCTCTTTTGTGCTGTAC+TGG | + | chr6_4:42886737-42886756 | None:intergenic | 45.0% |
| TTGGCCAAGGAGAAAATGCA+CGG | - | chr6_4:42886874-42886893 | Msa0988610:intron | 45.0% | |
| ! | AGAGCTATCTGCCATTTCCA+GGG | + | chr6_4:42886953-42886972 | None:intergenic | 45.0% |
| ! | TAGAGCTATCTGCCATTTCC+AGG | + | chr6_4:42886954-42886973 | None:intergenic | 45.0% |
| !!! | ATTTGTTTTATTTTTATTTT+TGG | - | chr6_4:42884243-42884262 | Msa0988610:CDS | 5.0% |
| GTCCTGAACGGTGTATGTGT+CGG | + | chr6_4:42884384-42884403 | None:intergenic | 50.0% | |
| GTCTGTGTCAGTGTCCTGAA+CGG | + | chr6_4:42884396-42884415 | None:intergenic | 50.0% | |
| ! | TACATGTGCATGTCGGTGTC+AGG | - | chr6_4:42884454-42884473 | Msa0988610:CDS | 50.0% |
| GCGTGATAGCTAACACGTGT+TGG | + | chr6_4:42884482-42884501 | None:intergenic | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr6_4:42884530-42884549 | None:intergenic | 50.0% |
| !! | CACGTTAAGCCGGTTTTGTG+GGG | + | chr6_4:42884540-42884559 | None:intergenic | 50.0% |
| !! | CCACGTTAAGCCGGTTTTGT+GGG | + | chr6_4:42884541-42884560 | None:intergenic | 50.0% |
| !! | ACCACGTTAAGCCGGTTTTG+TGG | + | chr6_4:42884542-42884561 | None:intergenic | 50.0% |
| ! | CAAAACCGGCTTAACGTGGT+TGG | - | chr6_4:42884542-42884561 | Msa0988610:intron | 50.0% |
| !! | CCTCACAAGCCGGTTTTGTA+GGG | + | chr6_4:42884583-42884602 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+AGG | + | chr6_4:42884584-42884603 | None:intergenic | 50.0% |
| AGGCCATCATCTATCCGATG+TGG | - | chr6_4:42884635-42884654 | Msa0988610:intron | 50.0% | |
| GGCCATCATCTATCCGATGT+GGG | - | chr6_4:42884636-42884655 | Msa0988610:intron | 50.0% | |
| GTCCCACATCGGATAGATGA+TGG | + | chr6_4:42884641-42884660 | None:intergenic | 50.0% | |
| !! | TAATAGTGCTGGTCGTGAGG+GGG | + | chr6_4:42884674-42884693 | None:intergenic | 50.0% |
| !! | CTAATAGTGCTGGTCGTGAG+GGG | + | chr6_4:42884675-42884694 | None:intergenic | 50.0% |
| !! | CCTAATAGTGCTGGTCGTGA+GGG | + | chr6_4:42884676-42884695 | None:intergenic | 50.0% |
| ACGACCAGCACTATTAGGCT+TGG | - | chr6_4:42884678-42884697 | Msa0988610:intron | 50.0% | |
| CGAACCAAGCCTAATAGTGC+TGG | + | chr6_4:42884685-42884704 | None:intergenic | 50.0% | |
| ! | GCACTATTAGGCTTGGTTCG+TGG | - | chr6_4:42884685-42884704 | Msa0988610:intron | 50.0% |
| ! | TCGTGGACATAAATGGTGGG+TGG | - | chr6_4:42884702-42884721 | Msa0988610:intron | 50.0% |
| !! | AATGGTGGGTGGTCTGATAG+CGG | - | chr6_4:42884713-42884732 | Msa0988610:intron | 50.0% |
| !! | GATAGCGGAAACCTGATAGC+AGG | - | chr6_4:42884728-42884747 | Msa0988610:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr6_4:42884530-42884549 | None:intergenic | 50.0% |
| !! | CACGTTAAGCCGGTTTTGTG+GGG | + | chr6_4:42884540-42884559 | None:intergenic | 50.0% |
| !! | CCACGTTAAGCCGGTTTTGT+GGG | + | chr6_4:42884541-42884560 | None:intergenic | 50.0% |
| !! | ACCACGTTAAGCCGGTTTTG+TGG | + | chr6_4:42884542-42884561 | None:intergenic | 50.0% |
| ! | CAAAACCGGCTTAACGTGGT+TGG | - | chr6_4:42884542-42884561 | Msa0988610:intron | 50.0% |
| !! | CCTCACAAGCCGGTTTTGTA+GGG | + | chr6_4:42884583-42884602 | None:intergenic | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+AGG | + | chr6_4:42884584-42884603 | None:intergenic | 50.0% |
| !! | CAGAAGTGTCAGTGCAGCTT+AGG | - | chr6_4:42884956-42884975 | Msa0988610:intron | 50.0% |
| !! | ACTCGCCTGGTTTTCTGTCA+TGG | - | chr6_4:42885140-42885159 | Msa0988610:intron | 50.0% |
| CCACGAGCAAACCACCAAAT+TGG | + | chr6_4:42885484-42885503 | None:intergenic | 50.0% | |
| !! | CCAATTTGGTGGTTTGCTCG+TGG | - | chr6_4:42885481-42885500 | Msa0988610:intron | 50.0% |
| ATTCCTGCGACCGTTTGTCA+TGG | + | chr6_4:42886432-42886451 | None:intergenic | 50.0% | |
| !! | GACTGGTTCGACCTCAATCA+TGG | - | chr6_4:42886496-42886515 | Msa0988610:intron | 50.0% |
| ! | CATTTTGAGCAGAGCAGCTC+TGG | + | chr6_4:42886625-42886644 | None:intergenic | 50.0% |
| TGTGTGCCACAAGAAGTCCT+CGG | + | chr6_4:42886673-42886692 | None:intergenic | 50.0% | |
| GCAGGAAGCAATATTGGCCA+AGG | - | chr6_4:42886861-42886880 | Msa0988610:intron | 50.0% | |
| TGGCCAAGGAGAAAATGCAC+GGG | - | chr6_4:42886875-42886894 | Msa0988610:intron | 50.0% | |
| GGGTACAAGTTGCATCTCAC+CGG | - | chr6_4:42886991-42887010 | Msa0988610:intron | 50.0% | |
| TACAAGTTGCATCTCACCGG+TGG | - | chr6_4:42886994-42887013 | Msa0988610:intron | 50.0% | |
| CACCGACACATACACCGTTC+AGG | - | chr6_4:42884379-42884398 | Msa0988610:intron | 55.0% | |
| CAGGACACTGACACAGACAC+CGG | - | chr6_4:42884398-42884417 | Msa0988610:intron | 55.0% | |
| ! | CCCACAAAACCGGCTTAACG+TGG | - | chr6_4:42884538-42884557 | Msa0988610:CDS | 55.0% |
| ! | ACCGGCTTAACGTGGTTGGT+TGG | - | chr6_4:42884546-42884565 | Msa0988610:intron | 55.0% |
| CCCAACCAACCACGTTAAGC+CGG | + | chr6_4:42884550-42884569 | None:intergenic | 55.0% | |
| ! | CCGGCTTAACGTGGTTGGTT+GGG | - | chr6_4:42884547-42884566 | Msa0988610:intron | 55.0% |
| !! | CCCTACAAAACCGGCTTGTG+AGG | - | chr6_4:42884580-42884599 | Msa0988610:intron | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr6_4:42884585-42884604 | Msa0988610:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | + | chr6_4:42884593-42884612 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+AGG | - | chr6_4:42884673-42884692 | Msa0988610:intron | 55.0% | |
| !! | GCCTAATAGTGCTGGTCGTG+AGG | + | chr6_4:42884677-42884696 | None:intergenic | 55.0% |
| AGCGGAAACCTGATAGCAGG+TGG | - | chr6_4:42884731-42884750 | Msa0988610:intron | 55.0% | |
| TGGCCCAATGGATCTTGGAG+AGG | - | chr6_4:42884751-42884770 | Msa0988610:intron | 55.0% | |
| ! | CCCACAAAACCGGCTTAACG+TGG | - | chr6_4:42884538-42884557 | Msa0988610:CDS | 55.0% |
| ! | ACCGGCTTAACGTGGTTGGT+TGG | - | chr6_4:42884546-42884565 | Msa0988610:intron | 55.0% |
| CCCAACCAACCACGTTAAGC+CGG | + | chr6_4:42884550-42884569 | None:intergenic | 55.0% | |
| ! | CCGGCTTAACGTGGTTGGTT+GGG | - | chr6_4:42884547-42884566 | Msa0988610:intron | 55.0% |
| !! | CCCTACAAAACCGGCTTGTG+AGG | - | chr6_4:42884580-42884599 | Msa0988610:intron | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr6_4:42884585-42884604 | Msa0988610:intron | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | + | chr6_4:42884593-42884612 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | - | chr6_4:42884913-42884932 | Msa0988610:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | - | chr6_4:42884914-42884933 | Msa0988610:intron | 55.0% | |
| GTCCCACATCGGATAGGTGA+TGG | + | chr6_4:42884919-42884938 | None:intergenic | 55.0% | |
| !! | GACTCGCTGACTCCTCAACA+TGG | - | chr6_4:42886118-42886137 | Msa0988610:intron | 55.0% |
| TTGCCATGACAAACGGTCGC+AGG | - | chr6_4:42886426-42886445 | Msa0988610:intron | 55.0% | |
| TCGTGTCCGAGGACTTCTTG+TGG | - | chr6_4:42886664-42886683 | Msa0988610:intron | 55.0% | |
| GACTTCTTGTGGCACACACG+TGG | - | chr6_4:42886675-42886694 | Msa0988610:intron | 55.0% | |
| ACACACGTGGCCCAAAACGT+GGG | - | chr6_4:42886688-42886707 | Msa0988610:intron | 55.0% | |
| TGGATGAAAGCGAAACCGCG+TGG | + | chr6_4:42886717-42886736 | None:intergenic | 55.0% | |
| ! | CCTCCCGTGCATTTTCTCCT+TGG | + | chr6_4:42886881-42886900 | None:intergenic | 55.0% |
| CCAAGGAGAAAATGCACGGG+AGG | - | chr6_4:42886878-42886897 | Msa0988610:intron | 55.0% | |
| CTAGGCGAACAACCAATGGC+CGG | + | chr6_4:42886915-42886934 | None:intergenic | 55.0% | |
| ! | GCCATTGGTTGTTCGCCTAG+CGG | - | chr6_4:42886915-42886934 | Msa0988610:intron | 55.0% |
| ! | CCATTGGTTGTTCGCCTAGC+GGG | - | chr6_4:42886916-42886935 | Msa0988610:intron | 55.0% |
| ! | TGAGAGGTACGCCCTGGAAA+TGG | - | chr6_4:42886939-42886958 | Msa0988610:intron | 55.0% |
| AAGTTGCATCTCACCGGTGG+TGG | - | chr6_4:42886997-42887016 | Msa0988610:intron | 55.0% | |
| CCATTGGGCCACCTGCTATC+AGG | + | chr6_4:42884742-42884761 | None:intergenic | 60.0% | |
| CCTGATAGCAGGTGGCCCAA+TGG | - | chr6_4:42884739-42884758 | Msa0988610:intron | 60.0% | |
| GCAGGTGGCCCAATGGATCT+TGG | - | chr6_4:42884746-42884765 | Msa0988610:intron | 60.0% | |
| CACACACGTGGCCCAAAACG+TGG | - | chr6_4:42886687-42886706 | Msa0988610:intron | 60.0% | |
| CACACGTGGCCCAAAACGTG+GGG | - | chr6_4:42886689-42886708 | Msa0988610:intron | 60.0% | |
| !! | ACGGGAGGTTAGCTTGCAGC+CGG | - | chr6_4:42886893-42886912 | Msa0988610:intron | 60.0% |
| !! | GTTAGCTTGCAGCCGGCCAT+TGG | - | chr6_4:42886900-42886919 | Msa0988610:intron | 60.0% |
| CCCGCTAGGCGAACAACCAA+TGG | + | chr6_4:42886919-42886938 | None:intergenic | 60.0% | |
| ! | TTGTTCGCCTAGCGGGTGAG+AGG | - | chr6_4:42886923-42886942 | Msa0988610:intron | 60.0% |
| ! | CATCTCACCGGTGGTGGCAT+GGG | - | chr6_4:42887003-42887022 | Msa0988610:intron | 60.0% |
| ! | CGCGTGGCTCCCCACGTTTT+GGG | + | chr6_4:42886701-42886720 | None:intergenic | 65.0% |
| CCAAAACGTGGGGAGCCACG+CGG | - | chr6_4:42886699-42886718 | Msa0988610:intron | 65.0% | |
| ! | GCATCTCACCGGTGGTGGCA+TGG | - | chr6_4:42887002-42887021 | Msa0988610:intron | 65.0% |
| CGTCTGTCCCATGCCACCAC+CGG | + | chr6_4:42887013-42887032 | None:intergenic | 65.0% | |
| ! | CCGCGTGGCTCCCCACGTTT+TGG | + | chr6_4:42886702-42886721 | None:intergenic | 70.0% |
| GGGCGTACCTCTCACCCGCT+AGG | + | chr6_4:42886933-42886952 | None:intergenic | 70.0% | |
| ! | AGCGGGTGAGAGGTACGCCC+TGG | - | chr6_4:42886933-42886952 | Msa0988610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 42883927 | 42887256 | 42883927 | ID=Msa0988610;Name=Msa0988610 |
| chr6_4 | mRNA | 42883927 | 42887256 | 42883927 | ID=Msa0988610-mRNA-1;Parent=Msa0988610;Name=Msa0988610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=175|1|1|1|0.5|0.6|5|122|157 |
| chr6_4 | exon | 42883927 | 42884318 | 42883927 | ID=Msa0988610-mRNA-1:exon:9994;Parent=Msa0988610-mRNA-1 |
| chr6_4 | exon | 42884431 | 42884557 | 42884431 | ID=Msa0988610-mRNA-1:exon:9993;Parent=Msa0988610-mRNA-1 |
| chr6_4 | exon | 42885070 | 42885143 | 42885070 | ID=Msa0988610-mRNA-1:exon:9992;Parent=Msa0988610-mRNA-1 |
| chr6_4 | exon | 42886022 | 42886085 | 42886022 | ID=Msa0988610-mRNA-1:exon:9991;Parent=Msa0988610-mRNA-1 |
| chr6_4 | exon | 42887143 | 42887256 | 42887143 | ID=Msa0988610-mRNA-1:exon:9990;Parent=Msa0988610-mRNA-1 |
| chr6_4 | five_prime_UTR | 42887143 | 42887256 | 42887143 | ID=Msa0988610-mRNA-1:five_prime_utr;Parent=Msa0988610-mRNA-1 |
| chr6_4 | five_prime_UTR | 42886025 | 42886085 | 42886025 | ID=Msa0988610-mRNA-1:five_prime_utr;Parent=Msa0988610-mRNA-1 |
| chr6_4 | CDS | 42886022 | 42886024 | 42886022 | ID=Msa0988610-mRNA-1:cds;Parent=Msa0988610-mRNA-1 |
| chr6_4 | CDS | 42885070 | 42885143 | 42885070 | ID=Msa0988610-mRNA-1:cds;Parent=Msa0988610-mRNA-1 |
| chr6_4 | CDS | 42884431 | 42884557 | 42884431 | ID=Msa0988610-mRNA-1:cds;Parent=Msa0988610-mRNA-1 |
| chr6_4 | CDS | 42884049 | 42884318 | 42884049 | ID=Msa0988610-mRNA-1:cds;Parent=Msa0988610-mRNA-1 |
| chr6_4 | three_prime_UTR | 42883927 | 42884048 | 42883927 | ID=Msa0988610-mRNA-1:three_prime_utr;Parent=Msa0988610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
