Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204320 | Msa0990280 | 0.817355 | 3.442788e-52 | -8.615850e-47 |
| Msa0987120 | Msa0990280 | 0.828648 | 7.998773e-55 | -8.615850e-47 |
| Msa0892340 | Msa0990280 | 0.844699 | 6.430559e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGCACCTGATTTAA+AGG | 0.121318 | 6_4:+50346165 | None:intergenic |
| CACTGCACTCCAACAATTTA+AGG | 0.144712 | 6_4:-50345987 | Msa0990280:three_prime_UTR |
| TTCCACATCAAACTGAAATT+TGG | 0.178975 | 6_4:+50346463 | None:intergenic |
| ACAAAGTCAACTTACAAATT+TGG | 0.188310 | 6_4:+50343919 | None:intergenic |
| ACTTACAAATTTGGATAATT+AGG | 0.197804 | 6_4:+50343928 | None:intergenic |
| AAAGGAGTTTGAATGCATTA+TGG | 0.213329 | 6_4:-50346383 | Msa0990280:exon |
| TCCAGTTTCAGAGTCAATTT+TGG | 0.235308 | 6_4:+50343966 | None:intergenic |
| TCAAGGAACTCATCCCTTAA+TGG | 0.244422 | 6_4:+50344328 | None:intergenic |
| ACTTCTCAACTGTACCATTA+AGG | 0.276497 | 6_4:-50344342 | Msa0990280:three_prime_UTR |
| GCCAAAATTGACTCTGAAAC+TGG | 0.280218 | 6_4:-50343967 | Msa0990280:three_prime_UTR |
| CAAACTGAAATTTGGCATAT+TGG | 0.283643 | 6_4:+50346471 | None:intergenic |
| AAAACAAAGCATGTCGAGTT+TGG | 0.307157 | 6_4:-50345905 | Msa0990280:three_prime_UTR |
| TAGTTGCTTGATCCAGTTTA+GGG | 0.307887 | 6_4:+50346808 | None:intergenic |
| ATAGTTGCTTGATCCAGTTT+AGG | 0.313407 | 6_4:+50346807 | None:intergenic |
| ACTTGTAAGTGCGGCCGTTA+AGG | 0.330575 | 6_4:+50343541 | None:intergenic |
| ATCAGGTGCAAAGCAGAATA+TGG | 0.356738 | 6_4:-50346158 | Msa0990280:three_prime_UTR |
| AAGGAGTTTGAATGCATTAT+GGG | 0.358943 | 6_4:-50346382 | Msa0990280:exon |
| TGAGGAGAGTGTTTGTTACT+AGG | 0.361513 | 6_4:-50343457 | Msa0990280:three_prime_UTR |
| ACAAGCTCAGGCAGCTCGTT+AGG | 0.373827 | 6_4:-50343493 | Msa0990280:three_prime_UTR |
| CATTGATGCACTCATGAGTT+TGG | 0.376968 | 6_4:-50345848 | Msa0990280:three_prime_UTR |
| AACTGGATCAAGCAACTATT+AGG | 0.385301 | 6_4:-50346803 | Msa0990280:CDS |
| TGTTGTTCATCACCCTAAAC+TGG | 0.390053 | 6_4:-50346820 | Msa0990280:CDS |
| CTTGTAAGTGCGGCCGTTAA+GGG | 0.396396 | 6_4:+50343542 | None:intergenic |
| TGAAGAACTCAATTGCTTGA+AGG | 0.396708 | 6_4:-50346313 | Msa0990280:three_prime_UTR |
| CTGAAGTATTGATGCAAAAG+TGG | 0.400283 | 6_4:-50346347 | Msa0990280:three_prime_UTR |
| CTTCTCAACTGTACCATTAA+GGG | 0.425047 | 6_4:-50344341 | Msa0990280:three_prime_UTR |
| CAAACTCATGAGTGCATCAA+TGG | 0.434631 | 6_4:+50345849 | None:intergenic |
| GACCACACAAAGGCCCTTAA+CGG | 0.441530 | 6_4:-50343555 | Msa0990280:three_prime_UTR |
| GCAGAATATGGTTGATGGAT+TGG | 0.447800 | 6_4:-50346146 | Msa0990280:three_prime_UTR |
| ATAATTAGGTTCCATGATAA+CGG | 0.455741 | 6_4:+50343942 | None:intergenic |
| AAGCAGTGTCCTTAAATTGT+TGG | 0.455936 | 6_4:+50345978 | None:intergenic |
| CACCACAAACATATTTCTAT+AGG | 0.475336 | 6_4:-50345943 | Msa0990280:three_prime_UTR |
| GCAAAGCAGAATATGGTTGA+TGG | 0.484486 | 6_4:-50346151 | Msa0990280:three_prime_UTR |
| TGAAACTGGAACCGTTATCA+TGG | 0.490634 | 6_4:-50343953 | Msa0990280:three_prime_UTR |
| GATTGGTCGTGCGCAGATAG+AGG | 0.497035 | 6_4:-50346501 | Msa0990280:CDS |
| CTCCTATAGAAATATGTTTG+TGG | 0.497391 | 6_4:+50345941 | None:intergenic |
| GAATGCATTATGGGGAAAGC+TGG | 0.500749 | 6_4:-50346373 | Msa0990280:three_prime_UTR |
| GAAGCTAAATCTGAATTATG+AGG | 0.503661 | 6_4:-50344037 | Msa0990280:three_prime_UTR |
| GAAGGAAATAATTGACTCAA+AGG | 0.507072 | 6_4:-50346295 | Msa0990280:intron |
| TCTTGAACAAGCACAAGCTC+AGG | 0.510956 | 6_4:-50343505 | Msa0990280:three_prime_UTR |
| TGCCAAATTTCAGTTTGATG+TGG | 0.524866 | 6_4:-50346465 | Msa0990280:CDS |
| TCAACTCGTTTACCAACGAA+TGG | 0.528272 | 6_4:+50344373 | None:intergenic |
| TTGTGCATAATGCCTTGTAC+TGG | 0.531696 | 6_4:+50346412 | None:intergenic |
| GATGCACTCATGAGTTTGGA+AGG | 0.537874 | 6_4:-50345844 | Msa0990280:intron |
| GGCCGTTAAGGGCCTTTGTG+TGG | 0.539317 | 6_4:+50343553 | None:intergenic |
| GTTTGATGTGGAAACTACTC+TGG | 0.541434 | 6_4:-50346453 | Msa0990280:CDS |
| TTAGTAGCAATTATTACTGA+TGG | 0.542557 | 6_4:-50346039 | Msa0990280:three_prime_UTR |
| AATACATCAGCGGTTTGACA+TGG | 0.555336 | 6_4:-50344269 | Msa0990280:three_prime_UTR |
| ATTCTCGATGATCCATTCGT+TGG | 0.558141 | 6_4:-50344385 | Msa0990280:three_prime_UTR |
| TAACGGCCGCACTTACAAGT+TGG | 0.558417 | 6_4:-50343538 | Msa0990280:three_prime_UTR |
| TGGCATCAAGCTTTGAGCCA+CGG | 0.570397 | 6_4:+50343986 | None:intergenic |
| TGAAGTATTGATGCAAAAGT+GGG | 0.580899 | 6_4:-50346346 | Msa0990280:three_prime_UTR |
| ATTATGAGGAAGCTGAGAGA+TGG | 0.581117 | 6_4:-50344023 | Msa0990280:three_prime_UTR |
| ATACATCAGCGGTTTGACAT+GGG | 0.582551 | 6_4:-50344268 | Msa0990280:three_prime_UTR |
| CATATGAATACAATATAACT+CGG | 0.586358 | 6_4:+50343413 | None:intergenic |
| TGACTATCTTTACCAGTACA+AGG | 0.586748 | 6_4:-50346424 | Msa0990280:CDS |
| GATCAAGCAACTATTAGGAC+AGG | 0.590644 | 6_4:-50346798 | Msa0990280:CDS |
| CATTATGCACAAATAATGAA+AGG | 0.594563 | 6_4:-50346401 | Msa0990280:CDS |
| ATGAGTTCCTTGAAAATGCT+AGG | 0.595391 | 6_4:-50344318 | Msa0990280:three_prime_UTR |
| AGTAATAATTGCTACTAACA+TGG | 0.602390 | 6_4:+50346044 | None:intergenic |
| TACATCAGCGGTTTGACATG+GGG | 0.619021 | 6_4:-50344267 | Msa0990280:intron |
| AGGAGTTTGAATGCATTATG+GGG | 0.622515 | 6_4:-50346381 | Msa0990280:exon |
| CTGATGGTGCGTGAAGAGAA+CGG | 0.648360 | 6_4:-50346023 | Msa0990280:three_prime_UTR |
| TTAGGTAGACTAGTAGACTG+AGG | 0.661226 | 6_4:-50343475 | Msa0990280:three_prime_UTR |
| TGGATTGTGAATCTCATCCG+TGG | 0.676046 | 6_4:-50344003 | Msa0990280:three_prime_UTR |
| GAGTGACCAACTTGTAAGTG+CGG | 0.681740 | 6_4:+50343532 | None:intergenic |
| CATATTGCAGAATACATCAG+CGG | 0.686220 | 6_4:-50344279 | Msa0990280:three_prime_UTR |
| TATATATTAGAATATTGACG+TGG | 0.752575 | 6_4:-50343299 | None:intergenic |
| TCAGCTGATAGACCACACAA+AGG | 0.768324 | 6_4:-50343565 | Msa0990280:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCCAAAAAAAAAAAACAAT+GGG | + | chr6_4:50343633-50343652 | None:intergenic | 15.0% |
| !! | ATTCCAAAAAAAAAAAACAA+TGG | + | chr6_4:50343634-50343653 | None:intergenic | 15.0% |
| !! | AACAAATTTATATCAAACAT+TGG | + | chr6_4:50344666-50344685 | None:intergenic | 15.0% |
| !!! | TTCATATGATTTTTAGAATT+TGG | - | chr6_4:50344863-50344882 | Msa0990280:intron | 15.0% |
| !! | ATGAGAAATATTACAAAAAA+AGG | + | chr6_4:50344951-50344970 | None:intergenic | 15.0% |
| !! | ACACAAATATATTATCAAAT+GGG | - | chr6_4:50345601-50345620 | Msa0990280:intron | 15.0% |
| !! | AATGAATTAGCATTTAATAT+AGG | + | chr6_4:50345701-50345720 | None:intergenic | 15.0% |
| !!! | CTATTTTCTAAAATTATTAC+TGG | - | chr6_4:50346489-50346508 | Msa0990280:CDS | 15.0% |
| !! | TAGAGAAAGATCAATAAAAT+CGG | + | chr6_4:50343360-50343379 | None:intergenic | 20.0% |
| !! | TTTGAAAAATTCAACTTCTT+AGG | - | chr6_4:50343404-50343423 | Msa0990280:intron | 20.0% |
| !!! | TTTTTATGTTGTTTTTCTTC+TGG | - | chr6_4:50343671-50343690 | Msa0990280:intron | 20.0% |
| !! | TTTGAATTATGACTTCTAAA+AGG | - | chr6_4:50343712-50343731 | Msa0990280:intron | 20.0% |
| !! | GAAATTAAAGGAAAAAGAAA+TGG | + | chr6_4:50344558-50344577 | None:intergenic | 20.0% |
| !!! | TAATTAAACTGACTTTTTCT+GGG | + | chr6_4:50344589-50344608 | None:intergenic | 20.0% |
| !! | GATTTATGAATGGATAAATT+TGG | - | chr6_4:50344819-50344838 | Msa0990280:intron | 20.0% |
| !!! | CTCATTAGTTTAGATAAATT+TGG | - | chr6_4:50344966-50344985 | Msa0990280:intron | 20.0% |
| !! | TATTTGATGCAATTGAAAAT+TGG | - | chr6_4:50345170-50345189 | Msa0990280:intron | 20.0% |
| !! | GACACAAATATATTATCAAA+TGG | - | chr6_4:50345600-50345619 | Msa0990280:intron | 20.0% |
| !! | CACAAATATATTATCAAATG+GGG | - | chr6_4:50345602-50345621 | Msa0990280:intron | 20.0% |
| !!! | TTTTTTATAGTGTCCTTATT+AGG | - | chr6_4:50345792-50345811 | Msa0990280:intron | 20.0% |
| !!! | ATTATTTTGTAGCAGATATT+AGG | + | chr6_4:50346012-50346031 | None:intergenic | 20.0% |
| !!! | CAGCTAATTTTTTTACTATA+GGG | - | chr6_4:50346144-50346163 | Msa0990280:three_prime_UTR | 20.0% |
| !! | ACTTACAAATTTGGATAATT+AGG | + | chr6_4:50346322-50346341 | None:intergenic | 20.0% |
| !! | AAGAAGCAATTCAAAAATTA+AGG | + | chr6_4:50346650-50346669 | None:intergenic | 20.0% |
| !! | CATATGAATACAATATAACT+CGG | + | chr6_4:50346837-50346856 | None:intergenic | 20.0% |
| !! | AGTTTCAAAGATCTAAAATG+AGG | - | chr6_4:50343497-50343516 | Msa0990280:three_prime_UTR | 25.0% |
| ! | CAAAAAAAAAAAACAATGGG+AGG | + | chr6_4:50343630-50343649 | None:intergenic | 25.0% |
| !!! | CTCCCATTGTTTTTTTTTTT+TGG | - | chr6_4:50343628-50343647 | Msa0990280:intron | 25.0% |
| ! | CATTATGCACAAATAATGAA+AGG | - | chr6_4:50343846-50343865 | Msa0990280:intron | 25.0% |
| !! | TTTTTCATCACCTTTAAATC+AGG | - | chr6_4:50344072-50344091 | Msa0990280:intron | 25.0% |
| !!! | ATCTTTTTTAACCATGACAA+TGG | - | chr6_4:50344133-50344152 | Msa0990280:intron | 25.0% |
| ! | AGTAATAATTGCTACTAACA+TGG | + | chr6_4:50344206-50344225 | None:intergenic | 25.0% |
| ! | TTAGTAGCAATTATTACTGA+TGG | - | chr6_4:50344208-50344227 | Msa0990280:intron | 25.0% |
| ! | CCAATTAAGAAAATAAACAG+TGG | + | chr6_4:50344454-50344473 | None:intergenic | 25.0% |
| !!! | CCACTGTTTATTTTCTTAAT+TGG | - | chr6_4:50344451-50344470 | Msa0990280:intron | 25.0% |
| !!! | GTTTATTTTCTTAATTGGTG+TGG | - | chr6_4:50344456-50344475 | Msa0990280:intron | 25.0% |
| !!! | CTAATTAAACTGACTTTTTC+TGG | + | chr6_4:50344590-50344609 | None:intergenic | 25.0% |
| ! | TCAGTTTAATTAGAGTCTAA+GGG | - | chr6_4:50344597-50344616 | Msa0990280:intron | 25.0% |
| ! | TTTACCCATGATTATCATAT+TGG | - | chr6_4:50344730-50344749 | Msa0990280:intron | 25.0% |
| ! | TTCACCAATATGATAATCAT+GGG | + | chr6_4:50344737-50344756 | None:intergenic | 25.0% |
| ! | TTTCACCAATATGATAATCA+TGG | + | chr6_4:50344738-50344757 | None:intergenic | 25.0% |
| ! | TAGCTTCAATGATTTATGAA+TGG | - | chr6_4:50344809-50344828 | Msa0990280:intron | 25.0% |
| !!! | TTAGTATTTCCCTTTTTTTG+AGG | + | chr6_4:50345053-50345072 | None:intergenic | 25.0% |
| ! | ATGTAATGATCAGTATGTAA+TGG | - | chr6_4:50345091-50345110 | Msa0990280:intron | 25.0% |
| ! | ATACGATAAGAATGATACTT+TGG | + | chr6_4:50345243-50345262 | None:intergenic | 25.0% |
| !!! | ATTCTCATTTTTGTTTCTCA+CGG | - | chr6_4:50345356-50345375 | Msa0990280:intron | 25.0% |
| ! | ATTGTAATATGCAAAAATGC+AGG | - | chr6_4:50345837-50345856 | Msa0990280:intron | 25.0% |
| !! | AGAGACAATAAAGTATCATA+GGG | + | chr6_4:50346069-50346088 | None:intergenic | 25.0% |
| !!! | GCAGCTAATTTTTTTACTAT+AGG | - | chr6_4:50346143-50346162 | Msa0990280:three_prime_UTR | 25.0% |
| ! | ATAATTAGGTTCCATGATAA+CGG | + | chr6_4:50346308-50346327 | None:intergenic | 25.0% |
| ! | ACAAAGTCAACTTACAAATT+TGG | + | chr6_4:50346331-50346350 | None:intergenic | 25.0% |
| !!! | TGTTACTGACTTGATAAATA+AGG | - | chr6_4:50346348-50346367 | Msa0990280:three_prime_UTR | 25.0% |
| !!! | GTTACTGACTTGATAAATAA+GGG | - | chr6_4:50346349-50346368 | Msa0990280:three_prime_UTR | 25.0% |
| ! | TTTCTACCGTATTAACTTAT+GGG | - | chr6_4:50346390-50346409 | Msa0990280:exon | 25.0% |
| !! | ATCCTTTTTCCTCTATTTAT+AGG | - | chr6_4:50346596-50346615 | Msa0990280:intron | 25.0% |
| ! | ATCCTATAAATAGAGGAAAA+AGG | + | chr6_4:50346601-50346620 | None:intergenic | 25.0% |
| ! | ATTAAGGATCCTATAAATAG+AGG | + | chr6_4:50346608-50346627 | None:intergenic | 25.0% |
| ! | CTAGAGCAATTCAAAAATTA+AGG | + | chr6_4:50346624-50346643 | None:intergenic | 25.0% |
| !! | CTTAATTTTTGAATTGCTCT+AGG | - | chr6_4:50346622-50346641 | Msa0990280:intron | 25.0% |
| CAATAAAATCGGATGACAAA+AGG | + | chr6_4:50343349-50343368 | None:intergenic | 30.0% | |
| AAAAGGATGATTCTACAGAT+TGG | - | chr6_4:50343729-50343748 | Msa0990280:intron | 30.0% | |
| CAAACTGAAATTTGGCATAT+TGG | + | chr6_4:50343779-50343798 | None:intergenic | 30.0% | |
| TTCCACATCAAACTGAAATT+TGG | + | chr6_4:50343787-50343806 | None:intergenic | 30.0% | |
| AAAGGAGTTTGAATGCATTA+TGG | - | chr6_4:50343864-50343883 | Msa0990280:intron | 30.0% | |
| AAGGAGTTTGAATGCATTAT+GGG | - | chr6_4:50343865-50343884 | Msa0990280:intron | 30.0% | |
| !! | TGAAGTATTGATGCAAAAGT+GGG | - | chr6_4:50343901-50343920 | Msa0990280:intron | 30.0% |
| ! | GAAGGAAATAATTGACTCAA+AGG | - | chr6_4:50343952-50343971 | Msa0990280:three_prime_UTR | 30.0% |
| CATGACAATGGAAGAAAAAA+GGG | - | chr6_4:50344145-50344164 | Msa0990280:intron | 30.0% | |
| ! | CACCACAAACATATTTCTAT+AGG | - | chr6_4:50344304-50344323 | Msa0990280:three_prime_UTR | 30.0% |
| CTCCTATAGAAATATGTTTG+TGG | + | chr6_4:50344309-50344328 | None:intergenic | 30.0% | |
| AATAACATGTGGATATTGTG+TGG | + | chr6_4:50344527-50344546 | None:intergenic | 30.0% | |
| GTCAGTTTAATTAGAGTCTA+AGG | - | chr6_4:50344596-50344615 | Msa0990280:intron | 30.0% | |
| CAGTTTAATTAGAGTCTAAG+GGG | - | chr6_4:50344598-50344617 | Msa0990280:intron | 30.0% | |
| CGATTCTTGATACATGAAAT+AGG | + | chr6_4:50344762-50344781 | None:intergenic | 30.0% | |
| TCATTGAAGCTATTAAGCAT+TGG | + | chr6_4:50344801-50344820 | None:intergenic | 30.0% | |
| TGGTGGGAATATACTTATAT+TGG | + | chr6_4:50344896-50344915 | None:intergenic | 30.0% | |
| ATTGTTTGGTCCTCAAAAAA+AGG | - | chr6_4:50345040-50345059 | Msa0990280:intron | 30.0% | |
| TTGTTTGGTCCTCAAAAAAA+GGG | - | chr6_4:50345041-50345060 | Msa0990280:intron | 30.0% | |
| !! | GTTTAGATTGCGTTTGATTT+TGG | - | chr6_4:50345113-50345132 | Msa0990280:intron | 30.0% |
| TTACTATTGCATTACTTCTG+TGG | + | chr6_4:50345150-50345169 | None:intergenic | 30.0% | |
| TTTAGAAGTAACTCTAGACA+TGG | + | chr6_4:50345396-50345415 | None:intergenic | 30.0% | |
| !! | GATATTGATTCATGATTACG+TGG | - | chr6_4:50345427-50345446 | Msa0990280:intron | 30.0% |
| TACAAATGTGACATCAAATG+TGG | - | chr6_4:50345457-50345476 | Msa0990280:intron | 30.0% | |
| TACAAGTGTAACATCAAATG+TGG | - | chr6_4:50345528-50345547 | Msa0990280:intron | 30.0% | |
| !!! | TAGTCGTATTTTTTCTCTTG+TGG | - | chr6_4:50346031-50346050 | Msa0990280:three_prime_UTR | 30.0% |
| ! | CAGAGACAATAAAGTATCAT+AGG | + | chr6_4:50346070-50346089 | None:intergenic | 30.0% |
| ! | ACTTAATTGATGATTCCTTC+TGG | - | chr6_4:50346098-50346117 | Msa0990280:three_prime_UTR | 30.0% |
| GAAGCTAAATCTGAATTATG+AGG | - | chr6_4:50346210-50346229 | Msa0990280:intron | 30.0% | |
| !! | TAAGGGTTTTTGTAGTCTTA+TGG | - | chr6_4:50346366-50346385 | Msa0990280:three_prime_UTR | 30.0% |
| CTTTCTACCGTATTAACTTA+TGG | - | chr6_4:50346389-50346408 | Msa0990280:exon | 30.0% | |
| TTCTACCGTATTAACTTATG+GGG | - | chr6_4:50346391-50346410 | Msa0990280:exon | 30.0% | |
| ! | TTTTGAATTGCTTCTTGTCT+AGG | - | chr6_4:50346654-50346673 | Msa0990280:intron | 30.0% |
| TAGTTGCTTGATCCAGTTTA+GGG | + | chr6_4:50343442-50343461 | None:intergenic | 35.0% | |
| ATAGTTGCTTGATCCAGTTT+AGG | + | chr6_4:50343443-50343462 | None:intergenic | 35.0% | |
| AACTGGATCAAGCAACTATT+AGG | - | chr6_4:50343444-50343463 | Msa0990280:three_prime_UTR | 35.0% | |
| ! | GTGAGTAGCATATTTAGTTC+AGG | - | chr6_4:50343546-50343565 | Msa0990280:three_prime_UTR | 35.0% |
| CTATCAATCTCTGCTAAAAG+TGG | + | chr6_4:50343588-50343607 | None:intergenic | 35.0% | |
| TGCCAAATTTCAGTTTGATG+TGG | - | chr6_4:50343782-50343801 | Msa0990280:intron | 35.0% | |
| TGACTATCTTTACCAGTACA+AGG | - | chr6_4:50343823-50343842 | Msa0990280:intron | 35.0% | |
| AGGAGTTTGAATGCATTATG+GGG | - | chr6_4:50343866-50343885 | Msa0990280:intron | 35.0% | |
| !! | CTGAAGTATTGATGCAAAAG+TGG | - | chr6_4:50343900-50343919 | Msa0990280:intron | 35.0% |
| TGAAGAACTCAATTGCTTGA+AGG | - | chr6_4:50343934-50343953 | Msa0990280:three_prime_UTR | 35.0% | |
| !!! | CCTTTTTTCTTCCATTGTCA+TGG | + | chr6_4:50344147-50344166 | None:intergenic | 35.0% |
| CCATGACAATGGAAGAAAAA+AGG | - | chr6_4:50344144-50344163 | Msa0990280:intron | 35.0% | |
| AAGCAGTGTCCTTAAATTGT+TGG | + | chr6_4:50344272-50344291 | None:intergenic | 35.0% | |
| !!! | CGACATGCTTTGTTTTGTAA+TGG | + | chr6_4:50344338-50344357 | None:intergenic | 35.0% |
| AAAACAAAGCATGTCGAGTT+TGG | - | chr6_4:50344342-50344361 | Msa0990280:three_prime_UTR | 35.0% | |
| TGGAAGCAGAAAATAACATG+TGG | + | chr6_4:50344538-50344557 | None:intergenic | 35.0% | |
| TGGGCACACTAAGAAATTAA+AGG | + | chr6_4:50344570-50344589 | None:intergenic | 35.0% | |
| GTATCAAGAATCGTAATGCT+TGG | - | chr6_4:50344769-50344788 | Msa0990280:intron | 35.0% | |
| TGTGTTAGTATCACATTGAG+TGG | - | chr6_4:50345010-50345029 | Msa0990280:intron | 35.0% | |
| TGAGTGGAAAAGTCATTGTT+TGG | - | chr6_4:50345026-50345045 | Msa0990280:intron | 35.0% | |
| ! | TTTTCATCTCCACACATAGT+TGG | - | chr6_4:50345312-50345331 | Msa0990280:intron | 35.0% |
| GCAAGCATATAATGCATGAA+AGG | + | chr6_4:50345659-50345678 | None:intergenic | 35.0% | |
| GGTGAAGCAAATACCTAATA+AGG | + | chr6_4:50345808-50345827 | None:intergenic | 35.0% | |
| GCATATTACAATCAACACAG+AGG | + | chr6_4:50345829-50345848 | None:intergenic | 35.0% | |
| ACTTCTCAACTGTACCATTA+AGG | - | chr6_4:50345905-50345924 | Msa0990280:three_prime_UTR | 35.0% | |
| CTTCTCAACTGTACCATTAA+GGG | - | chr6_4:50345906-50345925 | Msa0990280:three_prime_UTR | 35.0% | |
| ATGAGTTCCTTGAAAATGCT+AGG | - | chr6_4:50345929-50345948 | Msa0990280:three_prime_UTR | 35.0% | |
| ! | TAAACAGCCTAGCATTTTCA+AGG | + | chr6_4:50345939-50345958 | None:intergenic | 35.0% |
| CATATTGCAGAATACATCAG+CGG | - | chr6_4:50345968-50345987 | Msa0990280:three_prime_UTR | 35.0% | |
| ! | TCCAGTTTCAGAGTCAATTT+TGG | + | chr6_4:50346284-50346303 | None:intergenic | 35.0% |
| TATGAAACAGACCTGAAAAC+TGG | + | chr6_4:50346542-50346561 | None:intergenic | 35.0% | |
| !!! | AGTTTTCAGGTCTGTTTCAT+AGG | - | chr6_4:50346541-50346560 | Msa0990280:intron | 35.0% |
| CAATACTGTAACTAGTAGTC+TGG | - | chr6_4:50346569-50346588 | Msa0990280:intron | 35.0% | |
| TGTTGTTCATCACCCTAAAC+TGG | - | chr6_4:50343427-50343446 | Msa0990280:three_prime_UTR | 40.0% | |
| GATCAAGCAACTATTAGGAC+AGG | - | chr6_4:50343449-50343468 | Msa0990280:three_prime_UTR | 40.0% | |
| GTTTGATGTGGAAACTACTC+TGG | - | chr6_4:50343794-50343813 | Msa0990280:intron | 40.0% | |
| TTGTGCATAATGCCTTGTAC+TGG | + | chr6_4:50343838-50343857 | None:intergenic | 40.0% | |
| CTGCTTTGCACCTGATTTAA+AGG | + | chr6_4:50344085-50344104 | None:intergenic | 40.0% | |
| ATCAGGTGCAAAGCAGAATA+TGG | - | chr6_4:50344089-50344108 | Msa0990280:intron | 40.0% | |
| GCAAAGCAGAATATGGTTGA+TGG | - | chr6_4:50344096-50344115 | Msa0990280:intron | 40.0% | |
| !! | GCAGAATATGGTTGATGGAT+TGG | - | chr6_4:50344101-50344120 | Msa0990280:intron | 40.0% |
| CACTGCACTCCAACAATTTA+AGG | - | chr6_4:50344260-50344279 | Msa0990280:intron | 40.0% | |
| CAAACTCATGAGTGCATCAA+TGG | + | chr6_4:50344401-50344420 | None:intergenic | 40.0% | |
| CATTGATGCACTCATGAGTT+TGG | - | chr6_4:50344399-50344418 | Msa0990280:intron | 40.0% | |
| CGCAACTACACAAAATTGGT+GGG | + | chr6_4:50344912-50344931 | None:intergenic | 40.0% | |
| ! | CCACCAATTTTGTGTAGTTG+CGG | - | chr6_4:50344910-50344929 | Msa0990280:intron | 40.0% |
| AGACCGCAACTACACAAAAT+TGG | + | chr6_4:50344916-50344935 | None:intergenic | 40.0% | |
| ! | TCTCCACACATAGTTGGTAT+TGG | - | chr6_4:50345318-50345337 | Msa0990280:intron | 40.0% |
| ! | CTCCACACATAGTTGGTATT+GGG | - | chr6_4:50345319-50345338 | Msa0990280:intron | 40.0% |
| ! | TCCACACATAGTTGGTATTG+GGG | - | chr6_4:50345320-50345339 | Msa0990280:intron | 40.0% |
| ATTCTCGATGATCCATTCGT+TGG | - | chr6_4:50345862-50345881 | Msa0990280:three_prime_UTR | 40.0% | |
| TCAACTCGTTTACCAACGAA+TGG | + | chr6_4:50345877-50345896 | None:intergenic | 40.0% | |
| TCAAGGAACTCATCCCTTAA+TGG | + | chr6_4:50345922-50345941 | None:intergenic | 40.0% | |
| AATACATCAGCGGTTTGACA+TGG | - | chr6_4:50345978-50345997 | Msa0990280:three_prime_UTR | 40.0% | |
| ATACATCAGCGGTTTGACAT+GGG | - | chr6_4:50345979-50345998 | Msa0990280:three_prime_UTR | 40.0% | |
| TTCTCTTGTGGCATACGATT+TGG | - | chr6_4:50346043-50346062 | Msa0990280:three_prime_UTR | 40.0% | |
| ! | ATTGATGATTCCTTCTGGTC+TGG | - | chr6_4:50346103-50346122 | Msa0990280:three_prime_UTR | 40.0% |
| ATTATGAGGAAGCTGAGAGA+TGG | - | chr6_4:50346224-50346243 | Msa0990280:intron | 40.0% | |
| !! | GCCAAAATTGACTCTGAAAC+TGG | - | chr6_4:50346280-50346299 | Msa0990280:intron | 40.0% |
| TGAAACTGGAACCGTTATCA+TGG | - | chr6_4:50346294-50346313 | Msa0990280:intron | 40.0% | |
| GAGTGCCCCATAAGTTAATA+CGG | + | chr6_4:50346399-50346418 | None:intergenic | 40.0% | |
| TACAAGTGTCAGTGTTGTGT+GGG | + | chr6_4:50346452-50346471 | None:intergenic | 40.0% | |
| TTAGGTAGACTAGTAGACTG+AGG | - | chr6_4:50346772-50346791 | Msa0990280:intron | 40.0% | |
| !! | TGAGGAGAGTGTTTGTTACT+AGG | - | chr6_4:50346790-50346809 | Msa0990280:CDS | 40.0% |
| GAATGCATTATGGGGAAAGC+TGG | - | chr6_4:50343874-50343893 | Msa0990280:intron | 45.0% | |
| TAGCATGACAAGCAAGAGTG+TGG | + | chr6_4:50344007-50344026 | None:intergenic | 45.0% | |
| GATGCACTCATGAGTTTGGA+AGG | - | chr6_4:50344403-50344422 | Msa0990280:intron | 45.0% | |
| CCGCAACTACACAAAATTGG+TGG | + | chr6_4:50344913-50344932 | None:intergenic | 45.0% | |
| TTGTGTAGTTGCGGTCTTGA+TGG | - | chr6_4:50344919-50344938 | Msa0990280:intron | 45.0% | |
| ! | ACACATAGTTGGTATTGGGG+CGG | - | chr6_4:50345323-50345342 | Msa0990280:intron | 45.0% |
| TACATCAGCGGTTTGACATG+GGG | - | chr6_4:50345980-50345999 | Msa0990280:three_prime_UTR | 45.0% | |
| GTAAAGTAGACCAGACCAGA+AGG | + | chr6_4:50346116-50346135 | None:intergenic | 45.0% | |
| TGGATTGTGAATCTCATCCG+TGG | - | chr6_4:50346244-50346263 | Msa0990280:intron | 45.0% | |
| TCAGTGTTGTGTGGGATACT+TGG | + | chr6_4:50346444-50346463 | None:intergenic | 45.0% | |
| CTACAAGTGTCAGTGTTGTG+TGG | + | chr6_4:50346453-50346472 | None:intergenic | 45.0% | |
| CTGGTGTCTTTGTGTCAGTT+CGG | - | chr6_4:50346508-50346527 | Msa0990280:intron | 45.0% | |
| TCAGCTGATAGACCACACAA+AGG | - | chr6_4:50346682-50346701 | Msa0990280:intron | 45.0% | |
| GAGTGACCAACTTGTAAGTG+CGG | + | chr6_4:50346718-50346737 | None:intergenic | 45.0% | |
| TCTTGAACAAGCACAAGCTC+AGG | - | chr6_4:50346742-50346761 | Msa0990280:intron | 45.0% | |
| !! | TATTAATAAATAATTAATGT+TGG | - | chr6_4:50344031-50344050 | Msa0990280:three_prime_UTR | 5.0% |
| ! | CTGATGGTGCGTGAAGAGAA+CGG | - | chr6_4:50344224-50344243 | Msa0990280:intron | 50.0% |
| GCCCCAATACCAACTATGTG+TGG | + | chr6_4:50345324-50345343 | None:intergenic | 50.0% | |
| ! | TTGGTATTGGGGCGGATTTG+AGG | - | chr6_4:50345331-50345350 | Msa0990280:intron | 50.0% |
| TCTTGACCTGTGCTATCGCA+CGG | + | chr6_4:50345766-50345785 | None:intergenic | 50.0% | |
| !! | TGGCATCAAGCTTTGAGCCA+CGG | + | chr6_4:50346264-50346283 | None:intergenic | 50.0% |
| ! | CGGTGTAGTGTCCAGTTTTC+AGG | - | chr6_4:50346528-50346547 | Msa0990280:intron | 50.0% |
| GACCACACAAAGGCCCTTAA+CGG | - | chr6_4:50346692-50346711 | Msa0990280:intron | 50.0% | |
| CTTGTAAGTGCGGCCGTTAA+GGG | + | chr6_4:50346708-50346727 | None:intergenic | 50.0% | |
| ACTTGTAAGTGCGGCCGTTA+AGG | + | chr6_4:50346709-50346728 | None:intergenic | 50.0% | |
| TAACGGCCGCACTTACAAGT+TGG | - | chr6_4:50346709-50346728 | Msa0990280:intron | 50.0% | |
| ! | GATTGGTCGTGCGCAGATAG+AGG | - | chr6_4:50343746-50343765 | Msa0990280:intron | 55.0% |
| ATAGACCCGTGCGATAGCAC+AGG | - | chr6_4:50345757-50345776 | Msa0990280:intron | 55.0% | |
| CTTGACCTGTGCTATCGCAC+GGG | + | chr6_4:50345765-50345784 | None:intergenic | 55.0% | |
| ACAAGCTCAGGCAGCTCGTT+AGG | - | chr6_4:50346754-50346773 | Msa0990280:intron | 55.0% | |
| GGCCGTTAAGGGCCTTTGTG+TGG | + | chr6_4:50346697-50346716 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 50343302 | 50346967 | 50343302 | ID=Msa0990280;Name=Msa0990280 |
| chr6_4 | mRNA | 50343302 | 50346967 | 50343302 | ID=Msa0990280-mRNA-1;Parent=Msa0990280;Name=Msa0990280-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.71|0.75|0.75|0.71|0.5|8|925|66 |
| chr6_4 | exon | 50343302 | 50343322 | 50343302 | ID=Msa0990280-mRNA-1:exon:10871;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50343424 | 50343593 | 50343424 | ID=Msa0990280-mRNA-1:exon:10870;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50343934 | 50344071 | 50343934 | ID=Msa0990280-mRNA-1:exon:10869;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50344268 | 50344410 | 50344268 | ID=Msa0990280-mRNA-1:exon:10868;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50345845 | 50346199 | 50345845 | ID=Msa0990280-mRNA-1:exon:10867;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50346296 | 50346522 | 50346296 | ID=Msa0990280-mRNA-1:exon:10866;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50346776 | 50346843 | 50346776 | ID=Msa0990280-mRNA-1:exon:10865;Parent=Msa0990280-mRNA-1 |
| chr6_4 | exon | 50346964 | 50346967 | 50346964 | ID=Msa0990280-mRNA-1:exon:10864;Parent=Msa0990280-mRNA-1 |
| chr6_4 | CDS | 50346964 | 50346967 | 50346964 | ID=Msa0990280-mRNA-1:cds;Parent=Msa0990280-mRNA-1 |
| chr6_4 | CDS | 50346776 | 50346843 | 50346776 | ID=Msa0990280-mRNA-1:cds;Parent=Msa0990280-mRNA-1 |
| chr6_4 | CDS | 50346394 | 50346522 | 50346394 | ID=Msa0990280-mRNA-1:cds;Parent=Msa0990280-mRNA-1 |
| chr6_4 | three_prime_UTR | 50346296 | 50346393 | 50346296 | ID=Msa0990280-mRNA-1:three_prime_utr;Parent=Msa0990280-mRNA-1 |
| chr6_4 | three_prime_UTR | 50345845 | 50346199 | 50345845 | ID=Msa0990280-mRNA-1:three_prime_utr;Parent=Msa0990280-mRNA-1 |
| chr6_4 | three_prime_UTR | 50344268 | 50344410 | 50344268 | ID=Msa0990280-mRNA-1:three_prime_utr;Parent=Msa0990280-mRNA-1 |
| chr6_4 | three_prime_UTR | 50343934 | 50344071 | 50343934 | ID=Msa0990280-mRNA-1:three_prime_utr;Parent=Msa0990280-mRNA-1 |
| chr6_4 | three_prime_UTR | 50343424 | 50343593 | 50343424 | ID=Msa0990280-mRNA-1:three_prime_utr;Parent=Msa0990280-mRNA-1 |
| chr6_4 | three_prime_UTR | 50343302 | 50343322 | 50343302 | ID=Msa0990280-mRNA-1:three_prime_utr;Parent=Msa0990280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
