Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892340 | EOY21722.1 | 68.280 | 186 | 38 | 2 | 84 | 250 | 1 | 184 | 1.05e-84 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892340 | sp|Q5GI04|HIR1_CAPAN | 87.500 | 96 | 11 | 1 | 156 | 250 | 152 | 247 | 2.86e-49 | 167 |
| Msa0892340 | sp|Q5GI04|HIR1_CAPAN | 66.667 | 69 | 23 | 0 | 84 | 152 | 1 | 69 | 2.05e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892340 | A0A061FXZ6 | 68.280 | 186 | 38 | 2 | 84 | 250 | 1 | 184 | 5.01e-85 | 262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104330 | Msa0892340 | 0.863452 | 2.464302e-64 | -8.615850e-47 |
| Msa0680090 | Msa0892340 | 0.803075 | 4.145257e-49 | -8.615850e-47 |
| Msa0204320 | Msa0892340 | 0.969808 | 1.141214e-130 | -8.615850e-47 |
| Msa0220740 | Msa0892340 | 0.800626 | 1.319514e-48 | -8.615850e-47 |
| Msa0315200 | Msa0892340 | 0.809274 | 2.051958e-50 | -8.615850e-47 |
| Msa0320120 | Msa0892340 | 0.805620 | 1.222372e-49 | -8.615850e-47 |
| Msa0323080 | Msa0892340 | 0.809949 | 1.469457e-50 | -8.615850e-47 |
| Msa0328810 | Msa0892340 | 0.814677 | 1.363763e-51 | -8.615850e-47 |
| Msa0892340 | Msa0901500 | 0.803002 | 4.290506e-49 | -8.615850e-47 |
| Msa0892340 | Msa0925290 | 0.809282 | 2.043508e-50 | -8.615850e-47 |
| Msa0892340 | Msa0987120 | 0.980507 | 2.230043e-150 | -8.615850e-47 |
| Msa0892340 | Msa0990280 | 0.844699 | 6.430559e-59 | -8.615850e-47 |
| Msa0892340 | Msa1030970 | 0.800859 | 1.182858e-48 | -8.615850e-47 |
| Msa0892340 | Msa1034360 | 0.815038 | 1.134213e-51 | -8.615850e-47 |
| Msa0892340 | Msa1045200 | 0.801183 | 1.015590e-48 | -8.615850e-47 |
| Msa0892340 | Msa1074060 | 0.810522 | 1.105440e-50 | -8.615850e-47 |
| Msa0892340 | Msa1244250 | 0.817951 | 2.525938e-52 | -8.615850e-47 |
| Msa0892340 | Msa1362880 | 0.803421 | 3.514797e-49 | -8.615850e-47 |
| Msa0892340 | Msa1411020 | 0.806179 | 9.326509e-50 | -8.615850e-47 |
| Msa0892340 | Msa1424290 | 0.804983 | 1.662332e-49 | -8.615850e-47 |
| Msa0892340 | Msa1434350 | 0.807550 | 4.786500e-50 | -8.615850e-47 |
| Msa0892340 | Msa1439320 | 0.806363 | 8.531409e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892340 | MtrunA17_Chr4g0060171 | 83.158 | 95 | 15 | 1 | 157 | 250 | 162 | 256 | 3.11e-47 | 159 |
| Msa0892340 | MtrunA17_Chr4g0060171 | 60.177 | 113 | 40 | 2 | 84 | 196 | 1 | 108 | 6.31e-39 | 137 |
| Msa0892340 | MtrunA17_Chr6g0452801 | 75.926 | 108 | 21 | 2 | 148 | 250 | 140 | 247 | 3.43e-46 | 156 |
| Msa0892340 | MtrunA17_Chr6g0452801 | 44.954 | 109 | 58 | 1 | 84 | 192 | 1 | 107 | 9.83e-27 | 105 |
| Msa0892340 | MtrunA17_Chr7g0249641 | 93.506 | 77 | 5 | 0 | 1 | 77 | 91 | 167 | 1.40e-44 | 160 |
| Msa0892340 | MtrunA17_Chr8g0362631 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.17e-42 | 147 |
| Msa0892340 | MtrunA17_Chr8g0362631 | 44.954 | 109 | 58 | 1 | 84 | 192 | 1 | 107 | 1.48e-28 | 110 |
| Msa0892340 | MtrunA17_Chr4g0060111 | 86.316 | 95 | 12 | 1 | 157 | 250 | 153 | 247 | 7.63e-42 | 144 |
| Msa0892340 | MtrunA17_Chr4g0060111 | 85.507 | 69 | 10 | 0 | 84 | 152 | 1 | 69 | 5.36e-40 | 140 |
| Msa0892340 | MtrunA17_Chr4g0060151 | 86.316 | 95 | 12 | 1 | 157 | 250 | 153 | 247 | 7.63e-42 | 144 |
| Msa0892340 | MtrunA17_Chr4g0060151 | 85.507 | 69 | 10 | 0 | 84 | 152 | 1 | 69 | 5.36e-40 | 140 |
| Msa0892340 | MtrunA17_Chr4g0060091 | 83.158 | 95 | 15 | 1 | 157 | 250 | 158 | 252 | 7.14e-40 | 139 |
| Msa0892340 | MtrunA17_Chr4g0060091 | 84.286 | 70 | 11 | 0 | 83 | 152 | 5 | 74 | 9.51e-40 | 139 |
| Msa0892340 | MtrunA17_Chr4g0060101 | 57.798 | 109 | 44 | 1 | 84 | 192 | 1 | 107 | 1.67e-39 | 138 |
| Msa0892340 | MtrunA17_Chr4g0060101 | 82.105 | 95 | 16 | 1 | 157 | 250 | 153 | 247 | 3.40e-39 | 137 |
| Msa0892340 | MtrunA17_Chr6g0476481 | 53.333 | 90 | 42 | 0 | 161 | 250 | 160 | 249 | 4.90e-27 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892340 | AT5G62740.1 | 85.263 | 95 | 13 | 1 | 157 | 250 | 153 | 247 | 1.40e-48 | 162 |
| Msa0892340 | AT5G62740.1 | 51.613 | 93 | 43 | 1 | 84 | 176 | 1 | 91 | 3.06e-29 | 112 |
| Msa0892340 | AT3G01290.1 | 69.369 | 111 | 29 | 1 | 145 | 250 | 137 | 247 | 4.19e-44 | 150 |
| Msa0892340 | AT3G01290.1 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 2.63e-24 | 99.0 |
| Msa0892340 | AT1G69840.1 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.1 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT1G69840.2 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.2 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT1G69840.5 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.5 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT1G69840.7 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.7 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT1G69840.4 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.4 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT1G69840.6 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.6 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT1G69840.3 | 75.789 | 95 | 22 | 1 | 157 | 250 | 153 | 247 | 1.83e-35 | 128 |
| Msa0892340 | AT1G69840.3 | 60.870 | 69 | 27 | 0 | 84 | 152 | 1 | 69 | 4.16e-28 | 109 |
| Msa0892340 | AT5G51570.1 | 57.447 | 94 | 39 | 1 | 157 | 250 | 157 | 249 | 2.50e-30 | 115 |
| Msa0892340 | AT1G65470.1 | 55.844 | 77 | 26 | 1 | 1 | 77 | 88 | 156 | 1.35e-15 | 76.6 |
| Msa0892340 | AT1G65470.2 | 55.844 | 77 | 26 | 1 | 1 | 77 | 88 | 156 | 1.48e-15 | 76.6 |
Find 66 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCTGATGCTGATATTT+TGG | 0.136068 | 6_1:+71702489 | Msa0892340:CDS |
| ATCATTCTGATTCATGTCTT+TGG | 0.248769 | 6_1:+71702515 | Msa0892340:CDS |
| GCATTGCAGTGAAAAGAAAA+TGG | 0.251403 | 6_1:+71703106 | Msa0892340:intron |
| CATTGCATGCCATGGTTTCT+TGG | 0.290257 | 6_1:+71703221 | Msa0892340:CDS |
| AAGAGTAGCGTGTTGTTTGC+TGG | 0.336436 | 6_1:+71702442 | Msa0892340:CDS |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 6_1:+71703265 | Msa0892340:CDS |
| GGGGATTGTGTTGGCGGAAG+GGG | 0.357109 | 6_1:+71702402 | Msa0892340:CDS |
| CTGATTCATGTCTTTGGTGT+TGG | 0.362682 | 6_1:+71702521 | Msa0892340:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 6_1:+71706535 | Msa0892340:CDS |
| CGTGGAATGACATGAAGATT+TGG | 0.389136 | 6_1:-71703344 | None:intergenic |
| TGATTCATGTCTTTGGTGTT+GGG | 0.389779 | 6_1:+71702522 | Msa0892340:CDS |
| TTTCTTGGAAAACGAATTGC+TGG | 0.394254 | 6_1:+71703236 | Msa0892340:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 6_1:+71703167 | Msa0892340:CDS |
| TGTCTGCAGAAATCAGCAAT+TGG | 0.415033 | 6_1:+71705737 | Msa0892340:intron |
| GTCTAAATATCTCTCTGGGC+TGG | 0.425139 | 6_1:+71706430 | Msa0892340:CDS |
| CATTGCAGTGAAAAGAAAAT+GGG | 0.429423 | 6_1:+71703107 | Msa0892340:CDS |
| GGAAGGGGTTAATTCAGCTT+TGG | 0.440309 | 6_1:+71702417 | Msa0892340:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.451469 | 6_1:+71706425 | Msa0892340:CDS |
| CAAAATATCAGCATCAGCAT+TGG | 0.451825 | 6_1:-71702488 | None:intergenic |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 6_1:+71703193 | Msa0892340:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.463698 | 6_1:+71706485 | Msa0892340:CDS |
| GTCTGCAGAAATCAGCAATT+GGG | 0.470409 | 6_1:+71705738 | Msa0892340:intron |
| AAAATATCAGCATCAGCATT+GGG | 0.483686 | 6_1:-71702487 | None:intergenic |
| TTGCTGGTCATCTCACTCTT+CGG | 0.485262 | 6_1:+71703252 | Msa0892340:CDS |
| TCTAAATATCTCTCTGGGCT+GGG | 0.486024 | 6_1:+71706431 | Msa0892340:CDS |
| TGAATTGTGAAGTGGCGAAT+GGG | 0.486970 | 6_1:+71702380 | Msa0892340:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.503619 | 6_1:+71703213 | Msa0892340:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 6_1:+71703194 | Msa0892340:CDS |
| TGTGATCAGCTGCAAGATTG+AGG | 0.516144 | 6_1:+71706339 | Msa0892340:intron |
| CAGCGTCAAGCCATTGTGGA+TGG | 0.520226 | 6_1:+71706464 | Msa0892340:CDS |
| AGAGTAGCGTGTTGTTTGCT+GGG | 0.520701 | 6_1:+71702443 | Msa0892340:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 6_1:-71703212 | None:intergenic |
| TGTGAGACCAAGACAAAGGT+TGG | 0.530281 | 6_1:+71703296 | Msa0892340:CDS |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 6_1:-71703303 | None:intergenic |
| GCGTGTTGTTTGCTGGGCAG+AGG | 0.537665 | 6_1:+71702449 | Msa0892340:CDS |
| TCAATACTTTGACACTATGA+AGG | 0.541468 | 6_1:+71706568 | Msa0892340:CDS |
| AATTAAGCGAGCCGAGGGTG+AGG | 0.551044 | 6_1:+71706403 | Msa0892340:CDS |
| GTGATCAGCTGCAAGATTGA+GGG | 0.554251 | 6_1:+71706340 | Msa0892340:intron |
| CTTATGCAAATTGCTAAGGT+AGG | 0.562701 | 6_1:-71706602 | None:intergenic |
| TATACTTATGCAAATTGCTA+AGG | 0.565571 | 6_1:-71706606 | None:intergenic |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 6_1:+71706529 | Msa0892340:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.573023 | 6_1:+71706426 | Msa0892340:CDS |
| CTGAATTGTGAAGTGGCGAA+TGG | 0.576328 | 6_1:+71702379 | Msa0892340:CDS |
| CAAGAAACCATGGCATGCAA+TGG | 0.579517 | 6_1:-71703220 | None:intergenic |
| GAATTGTGAAGTGGCGAATG+GGG | 0.580861 | 6_1:+71702381 | Msa0892340:CDS |
| TTCATGTCTTTGGTGTTGGG+AGG | 0.591006 | 6_1:+71702525 | Msa0892340:CDS |
| CATCCACAATGGCTTGACGC+TGG | 0.591027 | 6_1:-71706463 | None:intergenic |
| GTTGTTATTGTAGACTAGGG+AGG | 0.592831 | 6_1:+71702753 | Msa0892340:intron |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 6_1:+71703161 | Msa0892340:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 6_1:-71706414 | None:intergenic |
| TTGCAAATTAAGCGAGCCGA+GGG | 0.613528 | 6_1:+71706398 | Msa0892340:CDS |
| TCATCAACAAGCTTCGACAA+CGG | 0.616224 | 6_1:-71702343 | None:intergenic |
| AATTGTGAAGTGGCGAATGG+GGG | 0.623209 | 6_1:+71702382 | Msa0892340:CDS |
| GAGGGTGGCAGCGAATGAGA+AGG | 0.631840 | 6_1:+71706358 | Msa0892340:CDS |
| TGAGAAGCTGAATTGTGAAG+TGG | 0.631929 | 6_1:+71702372 | Msa0892340:CDS |
| CTTGCAAATTAAGCGAGCCG+AGG | 0.632438 | 6_1:+71706397 | Msa0892340:CDS |
| TCGCCAGCGTCAAGCCATTG+TGG | 0.633446 | 6_1:+71706460 | Msa0892340:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.635084 | 6_1:+71703148 | Msa0892340:CDS |
| GCTGGGCAGAGGATGATGTA+CGG | 0.640684 | 6_1:+71702460 | Msa0892340:CDS |
| GCAATTGGGAACAACACAGT+AGG | 0.650222 | 6_1:+71705752 | Msa0892340:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 6_1:+71703292 | Msa0892340:CDS |
| ATTGTGAAGTGGCGAATGGG+GGG | 0.662126 | 6_1:+71702383 | Msa0892340:CDS |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 6_1:-71706474 | None:intergenic |
| ATTGCAGTGAAAAGAAAATG+GGG | 0.673791 | 6_1:+71703108 | Msa0892340:CDS |
| ATCAGCTGCAAGATTGAGGG+TGG | 0.703805 | 6_1:+71706343 | Msa0892340:intron |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 6_1:-71706559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGTTAATTATTTATAAT+TGG | + | chr6_1:71704008-71704027 | Msa0892340:intron | 10.0% |
| !!! | ATTGATTTATAAAGATTAAA+TGG | - | chr6_1:71704053-71704072 | None:intergenic | 10.0% |
| !! | TTAATCTTTATAAATCAATT+TGG | + | chr6_1:71704054-71704073 | Msa0892340:intron | 10.0% |
| !! | AAAATAAGTATAAGAAAATA+TGG | - | chr6_1:71706314-71706333 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTCTTGATTTT+TGG | + | chr6_1:71702548-71702567 | Msa0892340:intron | 15.0% |
| !!! | AATGAATTTTTTTAAGATGT+TGG | + | chr6_1:71702648-71702667 | Msa0892340:intron | 15.0% |
| !! | AATAAAAATTAACAAGTATG+AGG | - | chr6_1:71703065-71703084 | None:intergenic | 15.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | - | chr6_1:71703374-71703393 | None:intergenic | 15.0% |
| !!! | AAAAATGTGTAAAGAATTTT+CGG | + | chr6_1:71703826-71703845 | Msa0892340:intron | 15.0% |
| !! | AAGAACATGTATAAAATATT+GGG | - | chr6_1:71703902-71703921 | None:intergenic | 15.0% |
| !! | AAAGAACATGTATAAAATAT+TGG | - | chr6_1:71703903-71703922 | None:intergenic | 15.0% |
| !! | TAAATGGTTTGAATAATAAA+TGG | - | chr6_1:71704037-71704056 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGTTTTTGTGTT+TGG | + | chr6_1:71702902-71702921 | Msa0892340:intron | 20.0% |
| !!! | TAAATACTTTCTTTTTAGCT+AGG | + | chr6_1:71703380-71703399 | Msa0892340:intron | 20.0% |
| !!! | TTTAGCTAGGATATTTTTTT+AGG | + | chr6_1:71703393-71703412 | Msa0892340:intron | 20.0% |
| !! | CTTATATGTTTGCTTAAATA+TGG | + | chr6_1:71703445-71703464 | Msa0892340:intron | 20.0% |
| !! | AGAACATGTATAAAATATTG+GGG | - | chr6_1:71703901-71703920 | None:intergenic | 20.0% |
| !! | AATTAAAATGCAGCAATAAA+GGG | - | chr6_1:71704127-71704146 | None:intergenic | 20.0% |
| !! | AAATTAAAATGCAGCAATAA+AGG | - | chr6_1:71704128-71704147 | None:intergenic | 20.0% |
| !!! | TTTATTCTAAGGAATCTTTA+CGG | + | chr6_1:71704240-71704259 | Msa0892340:intron | 20.0% |
| !!! | CAATTTGCAATGTATTTTAT+GGG | - | chr6_1:71704292-71704311 | None:intergenic | 20.0% |
| !! | ATAGAAAACCAATTCATATT+TGG | + | chr6_1:71704360-71704379 | Msa0892340:intron | 20.0% |
| !! | TTGTTCACATGATATTTAAT+GGG | + | chr6_1:71704744-71704763 | Msa0892340:intron | 20.0% |
| !! | TTATTAACACATGAATTCAT+TGG | - | chr6_1:71705416-71705435 | None:intergenic | 20.0% |
| !! | TTAAGTACTATAGAGAATAT+AGG | + | chr6_1:71705566-71705585 | Msa0892340:intron | 20.0% |
| !! | TTTCATTGCACAAATTATTT+AGG | + | chr6_1:71706081-71706100 | Msa0892340:intron | 20.0% |
| !! | TAAAGAAGCAAAAAACTAAA+GGG | - | chr6_1:71706111-71706130 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTTTGCTTCTTTA+GGG | + | chr6_1:71706111-71706130 | Msa0892340:intron | 20.0% |
| !! | TTATACTTCATACAATATCT+AGG | - | chr6_1:71706206-71706225 | None:intergenic | 20.0% |
| !!! | ACTATAGTTTATTTGTTGTG+TGG | + | chr6_1:71702597-71702616 | Msa0892340:intron | 25.0% |
| !!! | TTGGTTATGTTGATAGTAAT+TGG | + | chr6_1:71702667-71702686 | Msa0892340:intron | 25.0% |
| !!! | TGGTTATGTTGATAGTAATT+GGG | + | chr6_1:71702668-71702687 | Msa0892340:intron | 25.0% |
| !! | TATGTTGTTATTGTAGACTA+GGG | + | chr6_1:71702750-71702769 | Msa0892340:intron | 25.0% |
| !!! | TTTGTTTTTGTGTTTGGTTT+AGG | + | chr6_1:71702908-71702927 | Msa0892340:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | + | chr6_1:71703181-71703200 | Msa0892340:CDS | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | - | chr6_1:71703496-71703515 | None:intergenic | 25.0% |
| ! | TGACATACATTAGATACTAA+AGG | - | chr6_1:71703756-71703775 | None:intergenic | 25.0% |
| !! | CTTTATAAATCAATTTGGTG+TGG | + | chr6_1:71704059-71704078 | Msa0892340:intron | 25.0% |
| ! | TATAGTACACGTTTATTCTA+AGG | + | chr6_1:71704229-71704248 | Msa0892340:intron | 25.0% |
| !! | GCAATTTGCAATGTATTTTA+TGG | - | chr6_1:71704293-71704312 | None:intergenic | 25.0% |
| ! | TGTATATGCCAAATATGAAT+TGG | - | chr6_1:71704371-71704390 | None:intergenic | 25.0% |
| ! | CTTGTTCACATGATATTTAA+TGG | + | chr6_1:71704743-71704762 | Msa0892340:intron | 25.0% |
| ! | ATAATTTATTCTATCCTGCA+TGG | + | chr6_1:71704822-71704841 | Msa0892340:intron | 25.0% |
| ! | TAATTTATTCTATCCTGCAT+GGG | + | chr6_1:71704823-71704842 | Msa0892340:intron | 25.0% |
| !!! | ATGGATGAAGGTATTATATT+TGG | + | chr6_1:71705366-71705385 | Msa0892340:intron | 25.0% |
| !!! | AAATTTTGACAACCTGATTA+TGG | + | chr6_1:71705593-71705612 | Msa0892340:intron | 25.0% |
| ! | TGATCAAAATCTTAGTATGA+AGG | + | chr6_1:71705644-71705663 | Msa0892340:intron | 25.0% |
| ! | TCATATAGAAACAATGTTGT+GGG | - | chr6_1:71705851-71705870 | None:intergenic | 25.0% |
| ! | TTCATATAGAAACAATGTTG+TGG | - | chr6_1:71705852-71705871 | None:intergenic | 25.0% |
| ! | TGTGCAATGAAAATAGATTT+AGG | - | chr6_1:71706073-71706092 | None:intergenic | 25.0% |
| ! | CTAAAGAAGCAAAAAACTAA+AGG | - | chr6_1:71706112-71706131 | None:intergenic | 25.0% |
| !!! | CTTTAGTTTTTTGCTTCTTT+AGG | + | chr6_1:71706110-71706129 | Msa0892340:intron | 25.0% |
| ! | TATACTTATGCAAATTGCTA+AGG | - | chr6_1:71706609-71706628 | None:intergenic | 25.0% |
| AAAATATCAGCATCAGCATT+GGG | - | chr6_1:71702490-71702509 | None:intergenic | 30.0% | |
| ATCATTCTGATTCATGTCTT+TGG | + | chr6_1:71702515-71702534 | Msa0892340:CDS | 30.0% | |
| !! | TATTTGTTGTGTGGTTTAAC+TGG | + | chr6_1:71702606-71702625 | Msa0892340:intron | 30.0% |
| !! | ATTTGTTGTGTGGTTTAACT+GGG | + | chr6_1:71702607-71702626 | Msa0892340:intron | 30.0% |
| TGTTGAAGTTGAATGTGTAT+TGG | + | chr6_1:71702695-71702714 | Msa0892340:intron | 30.0% | |
| ! | CTATGTTGTTATTGTAGACT+AGG | + | chr6_1:71702749-71702768 | Msa0892340:intron | 30.0% |
| TTCTGATCCTGAAAAGTTAA+AGG | + | chr6_1:71702934-71702953 | Msa0892340:intron | 30.0% | |
| CATTGCAGTGAAAAGAAAAT+GGG | + | chr6_1:71703107-71703126 | Msa0892340:CDS | 30.0% | |
| ATTGCAGTGAAAAGAAAATG+GGG | + | chr6_1:71703108-71703127 | Msa0892340:CDS | 30.0% | |
| ATTTATGTTATTGGTAAGCG+TGG | - | chr6_1:71703365-71703384 | None:intergenic | 30.0% | |
| !!! | TATTTTTTTAGGTGTCATCC+TGG | + | chr6_1:71703404-71703423 | Msa0892340:intron | 30.0% |
| AATCAAAATAACATAGCACC+AGG | - | chr6_1:71703425-71703444 | None:intergenic | 30.0% | |
| !! | GAACACTGATTACATTTTGA+AGG | + | chr6_1:71703605-71703624 | Msa0892340:intron | 30.0% |
| !!! | GATTACATTTTGAAGGTACT+TGG | + | chr6_1:71703612-71703631 | Msa0892340:intron | 30.0% |
| GTATGTTCAGATACAATAGT+TGG | + | chr6_1:71703642-71703661 | Msa0892340:intron | 30.0% | |
| GAAACATAACTTTACCGAAA+GGG | - | chr6_1:71703800-71703819 | None:intergenic | 30.0% | |
| AGAAACATAACTTTACCGAA+AGG | - | chr6_1:71703801-71703820 | None:intergenic | 30.0% | |
| GACTAAAGTAGAAAATGTCA+AGG | - | chr6_1:71703870-71703889 | None:intergenic | 30.0% | |
| ! | AACCTTGACATTTTCTACTT+TGG | + | chr6_1:71703865-71703884 | Msa0892340:intron | 30.0% |
| AACCAAAGTAGAAAATGTCA+AGG | - | chr6_1:71703995-71704014 | None:intergenic | 30.0% | |
| ! | AATGTATTTTATGGGCAGTT+AGG | - | chr6_1:71704284-71704303 | None:intergenic | 30.0% |
| CAAATTGCCTCCTAATTATT+AGG | + | chr6_1:71704305-71704324 | Msa0892340:intron | 30.0% | |
| AACCACTACACCTAATAATT+AGG | - | chr6_1:71704318-71704337 | None:intergenic | 30.0% | |
| !! | TAAGAGAGGCTAAGTTTTAT+AGG | - | chr6_1:71704468-71704487 | None:intergenic | 30.0% |
| CTCTTTGCTTGTAAAATACT+GGG | - | chr6_1:71704802-71704821 | None:intergenic | 30.0% | |
| TCTCTTTGCTTGTAAAATAC+TGG | - | chr6_1:71704803-71704822 | None:intergenic | 30.0% | |
| TGTTATTGAGGCTCTTATAT+GGG | + | chr6_1:71704886-71704905 | Msa0892340:intron | 30.0% | |
| ACAAAAAGCAATGACATAGA+AGG | - | chr6_1:71705004-71705023 | None:intergenic | 30.0% | |
| ! | AACTTTTCTCTAACAAGATG+TGG | - | chr6_1:71705212-71705231 | None:intergenic | 30.0% |
| ATATAATACCTTCATCCATC+TGG | - | chr6_1:71705365-71705384 | None:intergenic | 30.0% | |
| CATGTGTTAATAAACTGTCA+AGG | + | chr6_1:71705423-71705442 | Msa0892340:intron | 30.0% | |
| ATAAAGCACAAAAGACAATC+AGG | - | chr6_1:71705494-71705513 | None:intergenic | 30.0% | |
| !! | GATTTTGATCAGTTGATTGT+TGG | - | chr6_1:71705635-71705654 | None:intergenic | 30.0% |
| CATATAGAAACAATGTTGTG+GGG | - | chr6_1:71705850-71705869 | None:intergenic | 30.0% | |
| TACATGTATGACGAACTATA+AGG | - | chr6_1:71705994-71706013 | None:intergenic | 30.0% | |
| TATAGTTCGTCATACATGTA+CGG | + | chr6_1:71705994-71706013 | Msa0892340:intron | 30.0% | |
| TATGGCAATTCATGAACAAA+GGG | - | chr6_1:71706296-71706315 | None:intergenic | 30.0% | |
| ATATGGCAATTCATGAACAA+AGG | - | chr6_1:71706297-71706316 | None:intergenic | 30.0% | |
| !! | GTTTTTCAGTTAATGTACCA+GGG | + | chr6_1:71706507-71706526 | Msa0892340:CDS | 30.0% |
| TCAATACTTTGACACTATGA+AGG | + | chr6_1:71706568-71706587 | Msa0892340:CDS | 30.0% | |
| CAAAATATCAGCATCAGCAT+TGG | - | chr6_1:71702491-71702510 | None:intergenic | 35.0% | |
| ! | CAATGCTGATGCTGATATTT+TGG | + | chr6_1:71702489-71702508 | Msa0892340:CDS | 35.0% |
| !! | TGATTCATGTCTTTGGTGTT+GGG | + | chr6_1:71702522-71702541 | Msa0892340:CDS | 35.0% |
| !! | GCTGATTCCTTTAACTTTTC+AGG | - | chr6_1:71702944-71702963 | None:intergenic | 35.0% |
| TCATGTGTCCAAGAATTACT+AGG | + | chr6_1:71702970-71702989 | Msa0892340:intron | 35.0% | |
| CACACAATCCTAGTAATTCT+TGG | - | chr6_1:71702981-71703000 | None:intergenic | 35.0% | |
| GCATTGCAGTGAAAAGAAAA+TGG | + | chr6_1:71703106-71703125 | Msa0892340:intron | 35.0% | |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | - | chr6_1:71703233-71703252 | None:intergenic | 35.0% |
| TTTCTTGGAAAACGAATTGC+TGG | + | chr6_1:71703236-71703255 | Msa0892340:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | - | chr6_1:71703306-71703325 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | + | chr6_1:71703470-71703489 | Msa0892340:intron | 35.0% | |
| AACAGAGGATGCATATAAAG+GGG | - | chr6_1:71703565-71703584 | None:intergenic | 35.0% | |
| CAACAGAGGATGCATATAAA+GGG | - | chr6_1:71703566-71703585 | None:intergenic | 35.0% | |
| CTTTATATGCATCCTCTGTT+GGG | + | chr6_1:71703565-71703584 | Msa0892340:intron | 35.0% | |
| TTTATATGCATCCTCTGTTG+GGG | + | chr6_1:71703566-71703585 | Msa0892340:intron | 35.0% | |
| CTGTTGTAACTCTCTTTCTT+TGG | - | chr6_1:71703698-71703717 | None:intergenic | 35.0% | |
| CAAAGAAAGAGAGTTACAAC+AGG | + | chr6_1:71703696-71703715 | Msa0892340:intron | 35.0% | |
| ! | TGTGTAAAGAATTTTCGGTG+AGG | + | chr6_1:71703831-71703850 | Msa0892340:intron | 35.0% |
| CACTACACCTAATAATTAGG+AGG | - | chr6_1:71704315-71704334 | None:intergenic | 35.0% | |
| CTCCTAATTATTAGGTGTAG+TGG | + | chr6_1:71704313-71704332 | Msa0892340:intron | 35.0% | |
| CAAGAAAGAGAAGACACAAA+TGG | - | chr6_1:71704431-71704450 | None:intergenic | 35.0% | |
| GTTCAGTGAGATAATAAGAG+AGG | - | chr6_1:71704482-71704501 | None:intergenic | 35.0% | |
| TTAGTGGAAATCAAAAGTGG+AGG | - | chr6_1:71704516-71704535 | None:intergenic | 35.0% | |
| GAGTTAGTGGAAATCAAAAG+TGG | - | chr6_1:71704519-71704538 | None:intergenic | 35.0% | |
| CATAGGAAAATGAGAGTTAG+TGG | - | chr6_1:71704532-71704551 | None:intergenic | 35.0% | |
| AATCCAACAAAAGCAACCTA+GGG | - | chr6_1:71704635-71704654 | None:intergenic | 35.0% | |
| ! | ATCCTACAGATGAGTCTTAT+GGG | + | chr6_1:71704690-71704709 | Msa0892340:intron | 35.0% |
| AGAATAGAGCAGAGAGATAA+AGG | - | chr6_1:71704718-71704737 | None:intergenic | 35.0% | |
| TATCTCTCTGCTCTATTCTT+TGG | + | chr6_1:71704719-71704738 | Msa0892340:intron | 35.0% | |
| ATCTCTCTGCTCTATTCTTT+GGG | + | chr6_1:71704720-71704739 | Msa0892340:intron | 35.0% | |
| CAATAACAGAGTAAGGTACA+CGG | - | chr6_1:71704874-71704893 | None:intergenic | 35.0% | |
| TGTACCTTACTCTGTTATTG+AGG | + | chr6_1:71704874-71704893 | Msa0892340:intron | 35.0% | |
| CTGTTATTGAGGCTCTTATA+TGG | + | chr6_1:71704885-71704904 | Msa0892340:intron | 35.0% | |
| GCTGTTGTATATTACAGTGT+TGG | + | chr6_1:71704911-71704930 | Msa0892340:intron | 35.0% | |
| ! | ACTTTTTGTAGTGCACCAAA+TGG | + | chr6_1:71705057-71705076 | Msa0892340:intron | 35.0% |
| ! | CAAATGGCATTAGGTCTTTT+CGG | + | chr6_1:71705073-71705092 | Msa0892340:intron | 35.0% |
| ! | AAATGGCATTAGGTCTTTTC+GGG | + | chr6_1:71705074-71705093 | Msa0892340:intron | 35.0% |
| ATGGTTCTTGCCAATACATT+TGG | + | chr6_1:71705121-71705140 | Msa0892340:intron | 35.0% | |
| !! | ACTGCTGATTATTTTCTTGC+TGG | + | chr6_1:71705153-71705172 | Msa0892340:intron | 35.0% |
| !! | CTGCTGATTATTTTCTTGCT+GGG | + | chr6_1:71705154-71705173 | Msa0892340:intron | 35.0% |
| GGAGGATTTATTGTACCTAA+AGG | + | chr6_1:71705175-71705194 | Msa0892340:intron | 35.0% | |
| CAGCATTGCTGTAAGTTATT+TGG | + | chr6_1:71705234-71705253 | Msa0892340:intron | 35.0% | |
| ATGAATTTACTGCTTCCAGA+TGG | + | chr6_1:71705347-71705366 | Msa0892340:intron | 35.0% | |
| TGGCAGAAAATTAAGCAGTT+AGG | - | chr6_1:71705396-71705415 | None:intergenic | 35.0% | |
| ACAAAAGACAATCAGGAGTA+AGG | - | chr6_1:71705487-71705506 | None:intergenic | 35.0% | |
| TTTATGCGTGGTCAAAACTT+AGG | + | chr6_1:71705509-71705528 | Msa0892340:intron | 35.0% | |
| TCAATGAAGTCTCCATAATC+AGG | - | chr6_1:71705608-71705627 | None:intergenic | 35.0% | |
| !! | ATCTACCAGTTGATGATTAC+TGG | + | chr6_1:71705798-71705817 | Msa0892340:intron | 35.0% |
| ACTTACCAGTAATCATCAAC+TGG | - | chr6_1:71705806-71705825 | None:intergenic | 35.0% | |
| CGAACTATAAGGAAGGAAAA+GGG | - | chr6_1:71705983-71706002 | None:intergenic | 35.0% | |
| ACGAACTATAAGGAAGGAAA+AGG | - | chr6_1:71705984-71706003 | None:intergenic | 35.0% | |
| TGTATGACGAACTATAAGGA+AGG | - | chr6_1:71705990-71706009 | None:intergenic | 35.0% | |
| ACATGTACGGAAAACTATTG+AGG | + | chr6_1:71706007-71706026 | Msa0892340:intron | 35.0% | |
| ATCATAGCATGACTGTCTAT+TGG | - | chr6_1:71706138-71706157 | None:intergenic | 35.0% | |
| TAGACAGTCATGCTATGATA+TGG | + | chr6_1:71706139-71706158 | Msa0892340:intron | 35.0% | |
| GATATTTGGCATATAGCACT+CGG | - | chr6_1:71706273-71706292 | None:intergenic | 35.0% | |
| TCATGAACAAAGGGGATATT+TGG | - | chr6_1:71706287-71706306 | None:intergenic | 35.0% | |
| ATGGCAATTCATGAACAAAG+GGG | - | chr6_1:71706295-71706314 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | + | chr6_1:71706426-71706445 | Msa0892340:CDS | 35.0% | |
| !! | GGTTTTTCAGTTAATGTACC+AGG | + | chr6_1:71706506-71706525 | Msa0892340:CDS | 35.0% |
| TGCAAAAGATGTCATGGATA+TGG | + | chr6_1:71706535-71706554 | Msa0892340:CDS | 35.0% | |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr6_1:71706562-71706581 | None:intergenic | 35.0% |
| CTTATGCAAATTGCTAAGGT+AGG | - | chr6_1:71706605-71706624 | None:intergenic | 35.0% | |
| TCATCAACAAGCTTCGACAA+CGG | - | chr6_1:71702346-71702365 | None:intergenic | 40.0% | |
| TGAGAAGCTGAATTGTGAAG+TGG | + | chr6_1:71702372-71702391 | Msa0892340:CDS | 40.0% | |
| TGAATTGTGAAGTGGCGAAT+GGG | + | chr6_1:71702380-71702399 | Msa0892340:CDS | 40.0% | |
| ! | CTGATTCATGTCTTTGGTGT+TGG | + | chr6_1:71702521-71702540 | Msa0892340:CDS | 40.0% |
| ! | CATTGTTTGCTTGTTGCTGA+TGG | + | chr6_1:71702721-71702740 | Msa0892340:intron | 40.0% |
| ! | GTTGTTATTGTAGACTAGGG+AGG | + | chr6_1:71702753-71702772 | Msa0892340:intron | 40.0% |
| ! | TTGCTATTCAACGCACTTGT+CGG | + | chr6_1:71702809-71702828 | Msa0892340:intron | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | + | chr6_1:71703148-71703167 | Msa0892340:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | + | chr6_1:71703193-71703212 | Msa0892340:CDS | 40.0% |
| CAAATGTGAGACCAAGACAA+AGG | + | chr6_1:71703292-71703311 | Msa0892340:CDS | 40.0% | |
| CGTGGAATGACATGAAGATT+TGG | - | chr6_1:71703347-71703366 | None:intergenic | 40.0% | |
| ACAGAGGATGCATATAAAGG+GGG | - | chr6_1:71703564-71703583 | None:intergenic | 40.0% | |
| CCAACAGAGGATGCATATAA+AGG | - | chr6_1:71703567-71703586 | None:intergenic | 40.0% | |
| CCTTTATATGCATCCTCTGT+TGG | + | chr6_1:71703564-71703583 | Msa0892340:intron | 40.0% | |
| TTATATGCATCCTCTGTTGG+GGG | + | chr6_1:71703567-71703586 | Msa0892340:intron | 40.0% | |
| !! | TAGTTGGTAACGAAATGACC+AGG | + | chr6_1:71703658-71703677 | Msa0892340:intron | 40.0% |
| !! | AGTTGGTAACGAAATGACCA+GGG | + | chr6_1:71703659-71703678 | Msa0892340:intron | 40.0% |
| TCTAATGTATGTCACTGTCC+CGG | + | chr6_1:71703762-71703781 | Msa0892340:intron | 40.0% | |
| ! | AAAGGGAAAGAAAGTGTACC+GGG | - | chr6_1:71703783-71703802 | None:intergenic | 40.0% |
| ! | GAAAGGGAAAGAAAGTGTAC+CGG | - | chr6_1:71703784-71703803 | None:intergenic | 40.0% |
| GGTACACTTTCTTTCCCTTT+CGG | + | chr6_1:71703783-71703802 | Msa0892340:intron | 40.0% | |
| ! | CTTTACGGCACACATCATTT+TGG | + | chr6_1:71704255-71704274 | Msa0892340:intron | 40.0% |
| TTAGGTGTAGTGGTTATGCT+TGG | + | chr6_1:71704323-71704342 | Msa0892340:intron | 40.0% | |
| AGACACAAATGGTCATGGAT+CGG | - | chr6_1:71704420-71704439 | None:intergenic | 40.0% | |
| AGAGAAGACACAAATGGTCA+TGG | - | chr6_1:71704425-71704444 | None:intergenic | 40.0% | |
| AATCAAAAGTGGAGGAACGT+GGG | - | chr6_1:71704508-71704527 | None:intergenic | 40.0% | |
| AAATCAAAAGTGGAGGAACG+TGG | - | chr6_1:71704509-71704528 | None:intergenic | 40.0% | |
| GTCATGAGAGTTAGTGACAT+AGG | - | chr6_1:71704549-71704568 | None:intergenic | 40.0% | |
| TATTTGATCATGTTGCCCCT+AGG | + | chr6_1:71704616-71704635 | Msa0892340:intron | 40.0% | |
| ATCCAACAAAAGCAACCTAG+GGG | - | chr6_1:71704634-71704653 | None:intergenic | 40.0% | |
| GAATCCAACAAAAGCAACCT+AGG | - | chr6_1:71704636-71704655 | None:intergenic | 40.0% | |
| GTACAATATTCCTGCGAACA+AGG | + | chr6_1:71704663-71704682 | Msa0892340:intron | 40.0% | |
| CATCCTACAGATGAGTCTTA+TGG | + | chr6_1:71704689-71704708 | Msa0892340:intron | 40.0% | |
| AGAGCCTCAATAACAGAGTA+AGG | - | chr6_1:71704881-71704900 | None:intergenic | 40.0% | |
| AAAGATACCTTCCTGCTACA+GGG | - | chr6_1:71704943-71704962 | None:intergenic | 40.0% | |
| TAAAGATACCTTCCTGCTAC+AGG | - | chr6_1:71704944-71704963 | None:intergenic | 40.0% | |
| CGAAAAGACCTAATGCCATT+TGG | - | chr6_1:71705075-71705094 | None:intergenic | 40.0% | |
| !! | ATTAGGTCTTTTCGGGATGA+TGG | + | chr6_1:71705081-71705100 | Msa0892340:intron | 40.0% |
| ! | CTGATTATTTTCTTGCTGGG+AGG | + | chr6_1:71705157-71705176 | Msa0892340:intron | 40.0% |
| TGTAATTGCACGTTGTCCAT+AGG | - | chr6_1:71705323-71705342 | None:intergenic | 40.0% | |
| ! | TGTCTTTTGTGCTTTATGCG+TGG | + | chr6_1:71705497-71705516 | Msa0892340:intron | 40.0% |
| TGTCTGCAGAAATCAGCAAT+TGG | + | chr6_1:71705737-71705756 | Msa0892340:intron | 40.0% | |
| GTCTGCAGAAATCAGCAATT+GGG | + | chr6_1:71705738-71705757 | Msa0892340:intron | 40.0% | |
| ! | CTGGTAGATTGTTTGAAACG+AGG | - | chr6_1:71705787-71705806 | None:intergenic | 40.0% |
| AATGTTGTGGGGAAATCTCA+CGG | - | chr6_1:71705839-71705858 | None:intergenic | 40.0% | |
| ATTTATCTTACTCCCCAGAG+AGG | + | chr6_1:71705907-71705926 | Msa0892340:intron | 40.0% | |
| AAACACTTCTTGACCTCTCT+GGG | - | chr6_1:71705923-71705942 | None:intergenic | 40.0% | |
| TAAACACTTCTTGACCTCTC+TGG | - | chr6_1:71705924-71705943 | None:intergenic | 40.0% | |
| CTATAAGGAAGGAAAAGGGT+AGG | - | chr6_1:71705979-71705998 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | + | chr6_1:71706425-71706444 | Msa0892340:CDS | 40.0% | |
| TCTAAATATCTCTCTGGGCT+GGG | + | chr6_1:71706431-71706450 | Msa0892340:CDS | 40.0% | |
| CTGAATTGTGAAGTGGCGAA+TGG | + | chr6_1:71702379-71702398 | Msa0892340:CDS | 45.0% | |
| GAATTGTGAAGTGGCGAATG+GGG | + | chr6_1:71702381-71702400 | Msa0892340:CDS | 45.0% | |
| AATTGTGAAGTGGCGAATGG+GGG | + | chr6_1:71702382-71702401 | Msa0892340:CDS | 45.0% | |
| GGAAGGGGTTAATTCAGCTT+TGG | + | chr6_1:71702417-71702436 | Msa0892340:CDS | 45.0% | |
| !! | AAGAGTAGCGTGTTGTTTGC+TGG | + | chr6_1:71702442-71702461 | Msa0892340:CDS | 45.0% |
| !! | AGAGTAGCGTGTTGTTTGCT+GGG | + | chr6_1:71702443-71702462 | Msa0892340:CDS | 45.0% |
| !! | TTCATGTCTTTGGTGTTGGG+AGG | + | chr6_1:71702525-71702544 | Msa0892340:CDS | 45.0% |
| TTGTTGCCGAAATCTGTTCG+AGG | + | chr6_1:71702781-71702800 | Msa0892340:intron | 45.0% | |
| AGCTCTCCTCGAACAGATTT+CGG | - | chr6_1:71702790-71702809 | None:intergenic | 45.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | + | chr6_1:71703161-71703180 | Msa0892340:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | + | chr6_1:71703167-71703186 | Msa0892340:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | + | chr6_1:71703194-71703213 | Msa0892340:CDS | 45.0% |
| CAAGAAACCATGGCATGCAA+TGG | - | chr6_1:71703223-71703242 | None:intergenic | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | + | chr6_1:71703221-71703240 | Msa0892340:CDS | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | + | chr6_1:71703252-71703271 | Msa0892340:CDS | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | + | chr6_1:71703265-71703284 | Msa0892340:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | + | chr6_1:71703296-71703315 | Msa0892340:CDS | 45.0% | |
| !! | GTTGGTAACGAAATGACCAG+GGG | + | chr6_1:71703660-71703679 | Msa0892340:intron | 45.0% |
| CTCCCATAAGACTCATCTGT+AGG | - | chr6_1:71704695-71704714 | None:intergenic | 45.0% | |
| AGCTTCCTCTGATGATATCG+CGG | + | chr6_1:71704774-71704793 | Msa0892340:intron | 45.0% | |
| TATTCTATCCTGCATGGGCA+TGG | + | chr6_1:71704828-71704847 | Msa0892340:intron | 45.0% | |
| AAGATACCTTCCTGCTACAG+GGG | - | chr6_1:71704942-71704961 | None:intergenic | 45.0% | |
| GTAGTGCACCAAATGGCATT+AGG | + | chr6_1:71705064-71705083 | Msa0892340:intron | 45.0% | |
| ! | GGATGATGGCTTCTATTGCA+CGG | + | chr6_1:71705095-71705114 | Msa0892340:intron | 45.0% |
| ! | GATGATGGCTTCTATTGCAC+GGG | + | chr6_1:71705096-71705115 | Msa0892340:intron | 45.0% |
| TGCAGCTGAGCCAAATGTAT+TGG | - | chr6_1:71705134-71705153 | None:intergenic | 45.0% | |
| GTGGATCTGTGCTTACCTTT+AGG | - | chr6_1:71705193-71705212 | None:intergenic | 45.0% | |
| CACGGCTTGATCATTTCTGA+AGG | - | chr6_1:71705268-71705287 | None:intergenic | 45.0% | |
| CTTCAGAAATGATCAAGCCG+TGG | + | chr6_1:71705266-71705285 | Msa0892340:intron | 45.0% | |
| TGCACGTTGTCCATAGGTAA+GGG | - | chr6_1:71705317-71705336 | None:intergenic | 45.0% | |
| TTGCACGTTGTCCATAGGTA+AGG | - | chr6_1:71705318-71705337 | None:intergenic | 45.0% | |
| TACTGCTTCCAGATGGATGA+AGG | + | chr6_1:71705354-71705373 | Msa0892340:intron | 45.0% | |
| GCAATTGGGAACAACACAGT+AGG | + | chr6_1:71705752-71705771 | Msa0892340:CDS | 45.0% | |
| AACACTTCTTGACCTCTCTG+GGG | - | chr6_1:71705922-71705941 | None:intergenic | 45.0% | |
| TAGCACTCGGTAGAGAAACA+TGG | - | chr6_1:71706260-71706279 | None:intergenic | 45.0% | |
| TGTGATCAGCTGCAAGATTG+AGG | + | chr6_1:71706339-71706358 | Msa0892340:intron | 45.0% | |
| GTGATCAGCTGCAAGATTGA+GGG | + | chr6_1:71706340-71706359 | Msa0892340:intron | 45.0% | |
| TTGCAAATTAAGCGAGCCGA+GGG | + | chr6_1:71706398-71706417 | Msa0892340:CDS | 45.0% | |
| GTCTAAATATCTCTCTGGGC+TGG | + | chr6_1:71706430-71706449 | Msa0892340:CDS | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | - | chr6_1:71706477-71706496 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | + | chr6_1:71706485-71706504 | Msa0892340:CDS | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | + | chr6_1:71706529-71706548 | Msa0892340:CDS | 45.0% | |
| !!! | TTATATTATTAAATTAGTTT+TGG | + | chr6_1:71704175-71704194 | Msa0892340:intron | 5.0% |
| ATTGTGAAGTGGCGAATGGG+GGG | + | chr6_1:71702383-71702402 | Msa0892340:CDS | 50.0% | |
| !! | GTGCTTTTTACCCCCAACAG+AGG | - | chr6_1:71703580-71703599 | None:intergenic | 50.0% |
| AACTCTCTTTCTTTGGCCCC+CGG | - | chr6_1:71703691-71703710 | None:intergenic | 50.0% | |
| !!! | TGCCCCTAGGTTGCTTTTGT+TGG | + | chr6_1:71704629-71704648 | Msa0892340:intron | 50.0% |
| TAGGATGCAACCTTGTTCGC+AGG | - | chr6_1:71704676-71704695 | None:intergenic | 50.0% | |
| GTAAAAGACCATGCCCATGC+AGG | - | chr6_1:71704839-71704858 | None:intergenic | 50.0% | |
| ! | GGGCATGGTCTTTTACCAGT+TGG | + | chr6_1:71704843-71704862 | Msa0892340:intron | 50.0% |
| AGGTACACGGAGAATCCAAC+TGG | - | chr6_1:71704861-71704880 | None:intergenic | 50.0% | |
| GGCTTCTATTGCACGGGATA+TGG | + | chr6_1:71705102-71705121 | Msa0892340:intron | 50.0% | |
| CAGAAATGATCAAGCCGTGG+TGG | + | chr6_1:71705269-71705288 | Msa0892340:intron | 50.0% | |
| !! | TGATCAAGCCGTGGTGGATA+TGG | + | chr6_1:71705275-71705294 | Msa0892340:intron | 50.0% |
| !! | GATCAAGCCGTGGTGGATAT+GGG | + | chr6_1:71705276-71705295 | Msa0892340:intron | 50.0% |
| !! | ATCAAGCCGTGGTGGATATG+GGG | + | chr6_1:71705277-71705296 | Msa0892340:intron | 50.0% |
| TGGTTGTCACCCCTTACCTA+TGG | + | chr6_1:71705304-71705323 | Msa0892340:intron | 50.0% | |
| GCACGTTGTCCATAGGTAAG+GGG | - | chr6_1:71705316-71705335 | None:intergenic | 50.0% | |
| ATCAGCTGCAAGATTGAGGG+TGG | + | chr6_1:71706343-71706362 | Msa0892340:intron | 50.0% | |
| CTTGCAAATTAAGCGAGCCG+AGG | + | chr6_1:71706397-71706416 | Msa0892340:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr6_1:71706417-71706436 | None:intergenic | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | - | chr6_1:71706527-71706546 | None:intergenic | 50.0% |
| GAATGGGGGGATTGTGTTGG+CGG | + | chr6_1:71702396-71702415 | Msa0892340:CDS | 55.0% | |
| GCTGGGCAGAGGATGATGTA+CGG | + | chr6_1:71702460-71702479 | Msa0892340:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | - | chr6_1:71703215-71703234 | None:intergenic | 55.0% | |
| GAAATGACCAGGGGAGTCTC+CGG | + | chr6_1:71703669-71703688 | Msa0892340:intron | 55.0% | |
| AAATGACCAGGGGAGTCTCC+GGG | + | chr6_1:71703670-71703689 | Msa0892340:intron | 55.0% | |
| GTTGGATTTGCCCCTGTAGC+AGG | + | chr6_1:71704929-71704948 | Msa0892340:intron | 55.0% | |
| GATTTGCCCCTGTAGCAGGA+AGG | + | chr6_1:71704933-71704952 | Msa0892340:intron | 55.0% | |
| CAGTAGCCCCATATCCACCA+CGG | - | chr6_1:71705286-71705305 | None:intergenic | 55.0% | |
| AATTAAGCGAGCCGAGGGTG+AGG | + | chr6_1:71706403-71706422 | Msa0892340:CDS | 55.0% | |
| CATCCACAATGGCTTGACGC+TGG | - | chr6_1:71706466-71706485 | None:intergenic | 55.0% | |
| CAGCGTCAAGCCATTGTGGA+TGG | + | chr6_1:71706464-71706483 | Msa0892340:CDS | 55.0% | |
| GGCGAATGGGGGGATTGTGT+TGG | + | chr6_1:71702393-71702412 | Msa0892340:CDS | 60.0% | |
| ! | GGGGGATTGTGTTGGCGGAA+GGG | + | chr6_1:71702401-71702420 | Msa0892340:CDS | 60.0% |
| ! | GGGGATTGTGTTGGCGGAAG+GGG | + | chr6_1:71702402-71702421 | Msa0892340:CDS | 60.0% |
| !! | GCGTGTTGTTTGCTGGGCAG+AGG | + | chr6_1:71702449-71702468 | Msa0892340:CDS | 60.0% |
| CGGGATGCCATTGCATGCCA+TGG | + | chr6_1:71703213-71703232 | Msa0892340:CDS | 60.0% | |
| AATGACCAGGGGAGTCTCCG+GGG | + | chr6_1:71703671-71703690 | Msa0892340:intron | 60.0% | |
| GGGAGCCGCGATATCATCAG+AGG | - | chr6_1:71704782-71704801 | None:intergenic | 60.0% | |
| !! | CGTGGTGGATATGGGGCTAC+TGG | + | chr6_1:71705284-71705303 | Msa0892340:intron | 60.0% |
| GAGGGTGGCAGCGAATGAGA+AGG | + | chr6_1:71706358-71706377 | Msa0892340:CDS | 60.0% | |
| TCGCCAGCGTCAAGCCATTG+TGG | + | chr6_1:71706460-71706479 | Msa0892340:CDS | 60.0% | |
| ! | GGGGGGATTGTGTTGGCGGA+AGG | + | chr6_1:71702400-71702419 | Msa0892340:CDS | 65.0% |
| ATGACCAGGGGAGTCTCCGG+GGG | + | chr6_1:71703672-71703691 | Msa0892340:intron | 65.0% | |
| TTGGCCCCCGGAGACTCCCC+TGG | - | chr6_1:71703679-71703698 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 71702325 | 71706631 | 71702325 | ID=Msa0892340;Name=Msa0892340 |
| chr6_1 | mRNA | 71702325 | 71706631 | 71702325 | ID=Msa0892340-mRNA-1;Parent=Msa0892340;Name=Msa0892340-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.4|0.75|0.8|5|0|263 |
| chr6_1 | exon | 71702325 | 71702546 | 71702325 | ID=Msa0892340-mRNA-1:exon:12336;Parent=Msa0892340-mRNA-1 |
| chr6_1 | exon | 71702766 | 71702774 | 71702766 | ID=Msa0892340-mRNA-1:exon:12337;Parent=Msa0892340-mRNA-1 |
| chr6_1 | exon | 71703107 | 71703355 | 71703107 | ID=Msa0892340-mRNA-1:exon:12338;Parent=Msa0892340-mRNA-1 |
| chr6_1 | exon | 71705746 | 71705773 | 71705746 | ID=Msa0892340-mRNA-1:exon:12339;Parent=Msa0892340-mRNA-1 |
| chr6_1 | exon | 71706348 | 71706631 | 71706348 | ID=Msa0892340-mRNA-1:exon:12340;Parent=Msa0892340-mRNA-1 |
| chr6_1 | CDS | 71702325 | 71702546 | 71702325 | ID=Msa0892340-mRNA-1:cds;Parent=Msa0892340-mRNA-1 |
| chr6_1 | CDS | 71702766 | 71702774 | 71702766 | ID=Msa0892340-mRNA-1:cds;Parent=Msa0892340-mRNA-1 |
| chr6_1 | CDS | 71703107 | 71703355 | 71703107 | ID=Msa0892340-mRNA-1:cds;Parent=Msa0892340-mRNA-1 |
| chr6_1 | CDS | 71705746 | 71705773 | 71705746 | ID=Msa0892340-mRNA-1:cds;Parent=Msa0892340-mRNA-1 |
| chr6_1 | CDS | 71706348 | 71706631 | 71706348 | ID=Msa0892340-mRNA-1:cds;Parent=Msa0892340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
