Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993300 | XP_024641366.1 | 95.918 | 98 | 4 | 0 | 1 | 98 | 1 | 98 | 2.30e-63 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993300 | G7KMY2 | 95.918 | 98 | 4 | 0 | 1 | 98 | 1 | 98 | 1.10e-63 | 197 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0410650 | Msa0993300 | 0.802551 | 5.316049e-49 | -8.615850e-47 |
| Msa0993300 | Msa1460240 | 0.804979 | 1.665866e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993300 | MtrunA17_Chr6g0476661 | 95.918 | 98 | 4 | 0 | 1 | 98 | 1 | 98 | 2.11e-67 | 197 |
| Msa0993300 | MtrunA17_Chr1g0188281 | 84.536 | 97 | 15 | 0 | 2 | 98 | 36 | 132 | 4.87e-59 | 177 |
| Msa0993300 | MtrunA17_Chr1g0183081 | 58.763 | 97 | 40 | 0 | 2 | 98 | 3 | 99 | 1.58e-38 | 124 |
| Msa0993300 | MtrunA17_Chr7g0262501 | 58.947 | 95 | 39 | 0 | 4 | 98 | 1 | 95 | 2.01e-38 | 124 |
| Msa0993300 | MtrunA17_Chr6g0476721 | 55.556 | 90 | 40 | 0 | 6 | 95 | 36 | 125 | 1.64e-30 | 105 |
| Msa0993300 | MtrunA17_Chr5g0394191 | 52.809 | 89 | 42 | 0 | 6 | 94 | 5 | 93 | 1.17e-26 | 94.4 |
| Msa0993300 | MtrunA17_Chr1g0193951 | 40.260 | 77 | 46 | 0 | 3 | 79 | 42 | 118 | 7.23e-16 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993300 | AT4G10300.1 | 80.851 | 94 | 18 | 0 | 5 | 98 | 41 | 134 | 8.07e-54 | 164 |
| Msa0993300 | AT3G04300.1 | 58.242 | 91 | 38 | 0 | 8 | 98 | 1 | 91 | 2.28e-36 | 119 |
| Msa0993300 | AT4G28703.1 | 52.577 | 97 | 37 | 1 | 10 | 97 | 8 | 104 | 1.46e-30 | 104 |
| Msa0993300 | AT4G10280.1 | 50.515 | 97 | 45 | 1 | 5 | 98 | 43 | 139 | 1.78e-27 | 97.8 |
| Msa0993300 | AT4G10290.1 | 45.361 | 97 | 50 | 1 | 5 | 98 | 15 | 111 | 5.89e-22 | 83.2 |
| Msa0993300 | AT2G32650.2 | 32.632 | 95 | 64 | 0 | 4 | 98 | 40 | 134 | 3.36e-15 | 66.6 |
| Msa0993300 | AT2G32650.1 | 32.632 | 95 | 64 | 0 | 4 | 98 | 40 | 134 | 3.36e-15 | 66.6 |
| Msa0993300 | AT2G32180.1 | 32.632 | 95 | 64 | 0 | 4 | 98 | 40 | 134 | 3.44e-15 | 66.6 |
| Msa0993300 | AT2G32180.2 | 32.632 | 95 | 64 | 0 | 4 | 98 | 40 | 134 | 3.44e-15 | 66.6 |
Find 39 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGAGTCAGTTGAATT+TGG | 0.193870 | 6_4:+65799218 | Msa0993300:CDS |
| TTTATGTGAACAACATAAAA+AGG | 0.225970 | 6_4:-65795527 | None:intergenic |
| TCCTACTATTTCATTCATTA+GGG | 0.262876 | 6_4:-65799345 | None:intergenic |
| GAGTAACGTGACAGAGAAAT+TGG | 0.284911 | 6_4:+65795643 | Msa0993300:CDS |
| GTCCTACTATTTCATTCATT+AGG | 0.289030 | 6_4:-65799346 | None:intergenic |
| ACTGACTCATTTGCTCCATT+TGG | 0.332956 | 6_4:-65799209 | None:intergenic |
| GTCAACTAACAGAACATATA+TGG | 0.357920 | 6_4:+65799536 | Msa0993300:three_prime_UTR |
| CTAAAGGGATGAGTTGTACT+TGG | 0.367569 | 6_4:+65799264 | Msa0993300:CDS |
| GAAGCGTCTTGGTGGTTTGA+TGG | 0.388805 | 6_4:-65795576 | None:intergenic |
| TAGAAGATAACATGTCTCTA+TGG | 0.394004 | 6_4:-65799165 | None:intergenic |
| CAAGTACAACTCATCCCTTT+AGG | 0.404328 | 6_4:-65799263 | None:intergenic |
| TCGAAACAAAATAACACAAT+TGG | 0.404734 | 6_4:-65799452 | None:intergenic |
| GTGAAATAAGAACTTTAAAG+TGG | 0.430620 | 6_4:+65799398 | Msa0993300:three_prime_UTR |
| GAGACATGTTATCTTCTAGA+AGG | 0.432802 | 6_4:+65799170 | Msa0993300:CDS |
| ACTTGGTTGTGTTTCCTAAA+GGG | 0.436718 | 6_4:+65799249 | Msa0993300:CDS |
| AACTCACTCAACTTGGTGTT+AGG | 0.439185 | 6_4:+65795699 | Msa0993300:CDS |
| TAAGTCCATGGGAATTTGCT+TGG | 0.463958 | 6_4:-65799137 | None:intergenic |
| GACTTGGTTGTGTTTCCTAA+AGG | 0.466612 | 6_4:+65799248 | Msa0993300:CDS |
| AAAGTGAAGGTAACACCAAA+TGG | 0.485555 | 6_4:+65799194 | Msa0993300:CDS |
| AAGTAGAATCAAGGAGATGA+AGG | 0.492413 | 6_4:-65795598 | None:intergenic |
| TTAATAATCAAGTAGAATCA+AGG | 0.499573 | 6_4:-65795607 | None:intergenic |
| CCCCTAATGAATGAAATAGT+AGG | 0.509753 | 6_4:+65799344 | Msa0993300:three_prime_UTR |
| TTGGGATGTGTCTGTTGCTG+TGG | 0.522814 | 6_4:+65799283 | Msa0993300:CDS |
| TGAATTTGGAGCTGGTGACT+TGG | 0.536611 | 6_4:+65799232 | Msa0993300:CDS |
| TCTATGGAATCATAAGTCCA+TGG | 0.540021 | 6_4:-65799149 | None:intergenic |
| AGTAACGTGACAGAGAAATT+GGG | 0.542027 | 6_4:+65795644 | Msa0993300:CDS |
| AGGAGATGAAGGAAGCGTCT+TGG | 0.549691 | 6_4:-65795587 | None:intergenic |
| GTCCATGGGAATTTGCTTGG+AGG | 0.556443 | 6_4:-65799134 | None:intergenic |
| CTCAACTTGGTGTTAGGCAA+TGG | 0.558522 | 6_4:+65795705 | Msa0993300:CDS |
| TAAAGGGATGAGTTGTACTT+GGG | 0.567926 | 6_4:+65799265 | Msa0993300:CDS |
| CTATGGAATCATAAGTCCAT+GGG | 0.578157 | 6_4:-65799148 | None:intergenic |
| GAGTCAGTTGAATTTGGAGC+TGG | 0.586404 | 6_4:+65799224 | Msa0993300:CDS |
| ATTTGAATAAATCTTAAATG+TGG | 0.586962 | 6_4:+65799319 | Msa0993300:exon |
| TAGGACTTTATGAACTGACT+TGG | 0.591465 | 6_4:+65799363 | Msa0993300:three_prime_UTR |
| CCTACTATTTCATTCATTAG+GGG | 0.595357 | 6_4:-65799344 | None:intergenic |
| GTCCTCCAAGCAAATTCCCA+TGG | 0.603764 | 6_4:+65799132 | Msa0993300:CDS |
| AGATGAAGGAAGCGTCTTGG+TGG | 0.605103 | 6_4:-65795584 | None:intergenic |
| GATTGAGAGAAACCCTTCTG+AGG | 0.629043 | 6_4:+65795673 | Msa0993300:CDS |
| TCTTCTAGAAGGAAAAGTGA+AGG | 0.639142 | 6_4:+65799181 | Msa0993300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAATAGAACATTT+TGG | + | chr6_4:65796475-65796494 | Msa0993300:intron | 10.0% |
| !!! | TTGATTTGTAAAATTTATTT+TGG | + | chr6_4:65796844-65796863 | Msa0993300:intron | 10.0% |
| !! | TATAATAATTCTTGAAATTT+CGG | + | chr6_4:65798705-65798724 | Msa0993300:intron | 10.0% |
| !! | TAAATAAGTGTTTATAAATG+CGG | - | chr6_4:65795974-65795993 | None:intergenic | 15.0% |
| !!! | GATTTTTATCAATTTATGTT+TGG | + | chr6_4:65796918-65796937 | Msa0993300:intron | 15.0% |
| !! | TTCAAATTTAGAAAATAAGT+AGG | - | chr6_4:65797527-65797546 | None:intergenic | 15.0% |
| !!! | TATTGAAATTTAGTAGATTT+TGG | + | chr6_4:65797733-65797752 | Msa0993300:intron | 15.0% |
| !!! | ATTTGATGATATTTAGAAAT+TGG | - | chr6_4:65798200-65798219 | None:intergenic | 15.0% |
| !! | TTACCTTTAATAAAAAATGT+TGG | - | chr6_4:65798462-65798481 | None:intergenic | 15.0% |
| !!! | TTTTTTATTAAAGGTAAGTT+TGG | + | chr6_4:65798465-65798484 | Msa0993300:intron | 15.0% |
| !! | ATTTGAATAAATCTTAAATG+TGG | + | chr6_4:65799319-65799338 | Msa0993300:exon | 15.0% |
| !! | TTTATGTGAACAACATAAAA+AGG | - | chr6_4:65795530-65795549 | None:intergenic | 20.0% |
| !!! | TTTTATGTTGTTCACATAAA+AGG | + | chr6_4:65795530-65795549 | Msa0993300:five_prime_UTR | 20.0% |
| !! | TTAATAATCAAGTAGAATCA+AGG | - | chr6_4:65795610-65795629 | None:intergenic | 20.0% |
| !! | AAAAACATACTAGAAAGTAA+AGG | - | chr6_4:65795883-65795902 | None:intergenic | 20.0% |
| !!! | TTTACTTTCTAGTATGTTTT+TGG | + | chr6_4:65795882-65795901 | Msa0993300:intron | 20.0% |
| !! | TTGGTTAATCTTAAAATTTG+TGG | + | chr6_4:65795901-65795920 | Msa0993300:intron | 20.0% |
| !!! | TACAAGAAACAAAAACATTT+TGG | + | chr6_4:65796628-65796647 | Msa0993300:intron | 20.0% |
| !! | CAAACTTAATTATACTCTAA+AGG | - | chr6_4:65797034-65797053 | None:intergenic | 20.0% |
| !! | TTAGAGTATAATTAAGTTTG+AGG | + | chr6_4:65797034-65797053 | Msa0993300:intron | 20.0% |
| !! | TTCCACAAATAAGAATTTAT+TGG | + | chr6_4:65797225-65797244 | Msa0993300:intron | 20.0% |
| !!! | AATTGATTTTAGTCAAATTC+AGG | - | chr6_4:65797363-65797382 | None:intergenic | 20.0% |
| !! | CTTGAATTTAATCTATTATC+TGG | + | chr6_4:65797570-65797589 | Msa0993300:intron | 20.0% |
| !! | CTATTATATCTCTATTTAAC+TGG | - | chr6_4:65798974-65798993 | None:intergenic | 20.0% |
| ! | TTGAACGAATGTTTATAAGT+GGG | - | chr6_4:65796169-65796188 | None:intergenic | 25.0% |
| ! | TTTGAACGAATGTTTATAAG+TGG | - | chr6_4:65796170-65796189 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+TGG | + | chr6_4:65796275-65796294 | Msa0993300:intron | 25.0% |
| !!! | ATTCAAGCTATATTTTTGTG+AGG | + | chr6_4:65796700-65796719 | Msa0993300:intron | 25.0% |
| ! | TTAAAAGTTTAGCAACAAAG+TGG | - | chr6_4:65796737-65796756 | None:intergenic | 25.0% |
| !! | ATGTAAAGCGATTTATGTTT+TGG | + | chr6_4:65796882-65796901 | Msa0993300:intron | 25.0% |
| !! | GTCCAATAAATTCTTATTTG+TGG | - | chr6_4:65797230-65797249 | None:intergenic | 25.0% |
| !! | TGAAGTAAAGCTACTTATTT+TGG | - | chr6_4:65797445-65797464 | None:intergenic | 25.0% |
| !! | TTTTAATGTTCTGACAACTT+AGG | + | chr6_4:65797641-65797660 | Msa0993300:intron | 25.0% |
| !!! | AGTTTTTTTTTCCATTAACC+TGG | - | chr6_4:65797759-65797778 | None:intergenic | 25.0% |
| !! | TTATCGACTATATGAGTTTA+CGG | - | chr6_4:65797865-65797884 | None:intergenic | 25.0% |
| ! | ATATCATCAAATTTCCAATG+AGG | + | chr6_4:65798208-65798227 | Msa0993300:intron | 25.0% |
| ! | TTTGTTACACTAATAGTTGA+TGG | + | chr6_4:65798290-65798309 | Msa0993300:intron | 25.0% |
| !! | TTTTATCAAAATGTTCTCCT+AGG | + | chr6_4:65798387-65798406 | Msa0993300:intron | 25.0% |
| ! | CCTTTAATAAAAAATGTTGG+TGG | - | chr6_4:65798459-65798478 | None:intergenic | 25.0% |
| !!! | CCACCAACATTTTTTATTAA+AGG | + | chr6_4:65798456-65798475 | Msa0993300:intron | 25.0% |
| ! | ATAACATTAACAAGTAGACA+CGG | - | chr6_4:65798577-65798596 | None:intergenic | 25.0% |
| ! | AGAATTTCCGTTATAAAAGA+TGG | + | chr6_4:65798781-65798800 | Msa0993300:intron | 25.0% |
| ! | GAATTTCCGTTATAAAAGAT+GGG | + | chr6_4:65798782-65798801 | Msa0993300:intron | 25.0% |
| ! | AATTTCCGTTATAAAAGATG+GGG | + | chr6_4:65798783-65798802 | Msa0993300:intron | 25.0% |
| ! | ATCTCTATTTAACTGGAAAA+TGG | - | chr6_4:65798967-65798986 | None:intergenic | 25.0% |
| !!! | TAAAATTGCTTTTCTCTAAG+TGG | + | chr6_4:65799078-65799097 | Msa0993300:intron | 25.0% |
| ! | TCCTACTATTTCATTCATTA+GGG | - | chr6_4:65799348-65799367 | None:intergenic | 25.0% |
| !! | GTGAAATAAGAACTTTAAAG+TGG | + | chr6_4:65799398-65799417 | Msa0993300:three_prime_UTR | 25.0% |
| ! | TCGAAACAAAATAACACAAT+TGG | - | chr6_4:65799455-65799474 | None:intergenic | 25.0% |
| AAGAGAATAGAGGATATACT+TGG | - | chr6_4:65795732-65795751 | None:intergenic | 30.0% | |
| AGTAAAGGACATAATGATCT+AGG | - | chr6_4:65795868-65795887 | None:intergenic | 30.0% | |
| ACACTATTGAGATTAGTGTT+TGG | + | chr6_4:65795994-65796013 | Msa0993300:intron | 30.0% | |
| GATTAGTGTTTGGATGTAAA+TGG | + | chr6_4:65796004-65796023 | Msa0993300:intron | 30.0% | |
| CGATCTTAGAATTTGTCATT+AGG | + | chr6_4:65796091-65796110 | Msa0993300:intron | 30.0% | |
| TGAACGAATGTTTATAAGTG+GGG | - | chr6_4:65796168-65796187 | None:intergenic | 30.0% | |
| GTTCAAATGAAGCACAAATA+CGG | + | chr6_4:65796183-65796202 | Msa0993300:intron | 30.0% | |
| ! | ACTCTTAACGGTAAATCTTT+TGG | + | chr6_4:65796391-65796410 | Msa0993300:intron | 30.0% |
| !!! | AACGGTAAATCTTTTGGAAT+TGG | + | chr6_4:65796397-65796416 | Msa0993300:intron | 30.0% |
| ! | ATTTTGGATGTTGTCTGTAA+GGG | + | chr6_4:65796491-65796510 | Msa0993300:intron | 30.0% |
| !! | GATCTTGTTTGCGAATTTTT+AGG | + | chr6_4:65796582-65796601 | Msa0993300:intron | 30.0% |
| ! | TTGAGGCAAGAATCAATTTT+AGG | + | chr6_4:65797051-65797070 | Msa0993300:intron | 30.0% |
| ! | CACTACAGATTAGTTATGTT+TGG | - | chr6_4:65797085-65797104 | None:intergenic | 30.0% |
| CAAAAAACTTCGAGATGTTT+AGG | - | chr6_4:65797333-65797352 | None:intergenic | 30.0% | |
| AGCAAGTCTGATATAAAACT+TGG | - | chr6_4:65797406-65797425 | None:intergenic | 30.0% | |
| TATTATCTGGTGACACATTT+GGG | + | chr6_4:65797583-65797602 | Msa0993300:intron | 30.0% | |
| ATAAATCTACAACAATCCCT+AGG | - | chr6_4:65797611-65797630 | None:intergenic | 30.0% | |
| !! | AAATTTAGTAGATTTTGGCC+AGG | + | chr6_4:65797738-65797757 | Msa0993300:intron | 30.0% |
| CTGTGTATTCTTATGAATGT+AGG | - | chr6_4:65798058-65798077 | None:intergenic | 30.0% | |
| CTGATATACTATAAAAGCCT+AGG | - | chr6_4:65798407-65798426 | None:intergenic | 30.0% | |
| ! | CTAGGCTTTTATAGTATATC+AGG | + | chr6_4:65798405-65798424 | Msa0993300:intron | 30.0% |
| ATTTCCGTTATAAAAGATGG+GGG | + | chr6_4:65798784-65798803 | Msa0993300:intron | 30.0% | |
| AAGTTTGTCAAGAGTTGTTT+AGG | + | chr6_4:65798835-65798854 | Msa0993300:intron | 30.0% | |
| GATGAAAACAAAAAACAGAG+AGG | - | chr6_4:65798923-65798942 | None:intergenic | 30.0% | |
| ATTAGTTCAAAACAATCCCT+TGG | + | chr6_4:65799042-65799061 | Msa0993300:intron | 30.0% | |
| TTAGAATACACTTTCACCAA+GGG | - | chr6_4:65799061-65799080 | None:intergenic | 30.0% | |
| ! | TTTAGAATACACTTTCACCA+AGG | - | chr6_4:65799062-65799081 | None:intergenic | 30.0% |
| CATCTGTTACATCAAAATAG+GGG | - | chr6_4:65799107-65799126 | None:intergenic | 30.0% | |
| CCATCTGTTACATCAAAATA+GGG | - | chr6_4:65799108-65799127 | None:intergenic | 30.0% | |
| !!! | CCTATTTTGATGTAACAGAT+GGG | + | chr6_4:65799106-65799125 | Msa0993300:intron | 30.0% |
| !!! | CTATTTTGATGTAACAGATG+GGG | + | chr6_4:65799107-65799126 | Msa0993300:intron | 30.0% |
| TAGAAGATAACATGTCTCTA+TGG | - | chr6_4:65799168-65799187 | None:intergenic | 30.0% | |
| CCTACTATTTCATTCATTAG+GGG | - | chr6_4:65799347-65799366 | None:intergenic | 30.0% | |
| GTCCTACTATTTCATTCATT+AGG | - | chr6_4:65799349-65799368 | None:intergenic | 30.0% | |
| GTCAACTAACAGAACATATA+TGG | + | chr6_4:65799536-65799555 | Msa0993300:three_prime_UTR | 30.0% | |
| AAGTAGAATCAAGGAGATGA+AGG | - | chr6_4:65795601-65795620 | None:intergenic | 35.0% | |
| AGTAACGTGACAGAGAAATT+GGG | + | chr6_4:65795644-65795663 | Msa0993300:CDS | 35.0% | |
| GTGTAGAAGAAAGAGAATAG+AGG | - | chr6_4:65795742-65795761 | None:intergenic | 35.0% | |
| AGGACATAATGATCTAGGTT+AGG | - | chr6_4:65795863-65795882 | None:intergenic | 35.0% | |
| ATGAAGCACAAATACGGATA+TGG | + | chr6_4:65796189-65796208 | Msa0993300:intron | 35.0% | |
| ATCCAATGTGAGACTCTTAA+CGG | + | chr6_4:65796379-65796398 | Msa0993300:intron | 35.0% | |
| ! | CATTTTGGATGTTGTCTGTA+AGG | + | chr6_4:65796490-65796509 | Msa0993300:intron | 35.0% |
| TTTCTTGTACGTAGACAAAG+TGG | - | chr6_4:65796617-65796636 | None:intergenic | 35.0% | |
| TTGGATGCTTACTACTTAGT+TGG | + | chr6_4:65796647-65796666 | Msa0993300:intron | 35.0% | |
| GAATGATCTATGAGATAGAC+TGG | + | chr6_4:65796757-65796776 | Msa0993300:intron | 35.0% | |
| GATTCTGCAGTGATGAAAAT+TGG | + | chr6_4:65796810-65796829 | Msa0993300:intron | 35.0% | |
| !!! | GCAAGAATCAATTTTAGGAC+TGG | + | chr6_4:65797056-65797075 | Msa0993300:intron | 35.0% |
| ! | GCTCACTTGCTAAAGTTTAA+GGG | + | chr6_4:65797158-65797177 | Msa0993300:intron | 35.0% |
| ! | ATGCGAACATCTAGAATCAT+TGG | + | chr6_4:65797191-65797210 | Msa0993300:intron | 35.0% |
| TTGACTCCATATTGCATGTT+TGG | + | chr6_4:65797256-65797275 | Msa0993300:intron | 35.0% | |
| TGACTCCATATTGCATGTTT+GGG | + | chr6_4:65797257-65797276 | Msa0993300:intron | 35.0% | |
| ! | CATGTTTGGGTTCACAATAA+GGG | + | chr6_4:65797270-65797289 | Msa0993300:intron | 35.0% |
| ! | ATGTTTGGGTTCACAATAAG+GGG | + | chr6_4:65797271-65797290 | Msa0993300:intron | 35.0% |
| TTTAGTCAAATTCAGGCAGA+AGG | - | chr6_4:65797356-65797375 | None:intergenic | 35.0% | |
| CTATTATCTGGTGACACATT+TGG | + | chr6_4:65797582-65797601 | Msa0993300:intron | 35.0% | |
| AAACACTGTTACAACAGTGA+TGG | - | chr6_4:65797821-65797840 | None:intergenic | 35.0% | |
| ! | AATGCCTACTCAAAAGGTAT+CGG | + | chr6_4:65797894-65797913 | Msa0993300:intron | 35.0% |
| TTGAATAGTCTGGTTGATCA+AGG | + | chr6_4:65797926-65797945 | Msa0993300:intron | 35.0% | |
| TAGCTGAAAGTCCTTGAATT+TGG | + | chr6_4:65798118-65798137 | Msa0993300:intron | 35.0% | |
| GAAAGTCCTTGAATTTGGTA+TGG | + | chr6_4:65798123-65798142 | Msa0993300:intron | 35.0% | |
| GTGTCAAACATTGACAGTAT+CGG | - | chr6_4:65798494-65798513 | None:intergenic | 35.0% | |
| ATACTGTCAATGTTTGACAC+CGG | + | chr6_4:65798494-65798513 | Msa0993300:intron | 35.0% | |
| AATTGCAGTTACTGAAGAGA+GGG | + | chr6_4:65798731-65798750 | Msa0993300:intron | 35.0% | |
| ACAACTCTTGACAAACTTTC+TGG | - | chr6_4:65798833-65798852 | None:intergenic | 35.0% | |
| !!! | CCCTATTTTGATGTAACAGA+TGG | + | chr6_4:65799105-65799124 | Msa0993300:intron | 35.0% |
| CCCATCTGTTACATCAAAAT+AGG | - | chr6_4:65799109-65799128 | None:intergenic | 35.0% | |
| CTATGGAATCATAAGTCCAT+GGG | - | chr6_4:65799151-65799170 | None:intergenic | 35.0% | |
| TCTATGGAATCATAAGTCCA+TGG | - | chr6_4:65799152-65799171 | None:intergenic | 35.0% | |
| GAGACATGTTATCTTCTAGA+AGG | + | chr6_4:65799170-65799189 | Msa0993300:CDS | 35.0% | |
| ! | TCTTCTAGAAGGAAAAGTGA+AGG | + | chr6_4:65799181-65799200 | Msa0993300:CDS | 35.0% |
| AAAGTGAAGGTAACACCAAA+TGG | + | chr6_4:65799194-65799213 | Msa0993300:CDS | 35.0% | |
| GCAAATGAGTCAGTTGAATT+TGG | + | chr6_4:65799218-65799237 | Msa0993300:CDS | 35.0% | |
| ACTTGGTTGTGTTTCCTAAA+GGG | + | chr6_4:65799249-65799268 | Msa0993300:CDS | 35.0% | |
| TAAAGGGATGAGTTGTACTT+GGG | + | chr6_4:65799265-65799284 | Msa0993300:CDS | 35.0% | |
| CCCCTAATGAATGAAATAGT+AGG | + | chr6_4:65799344-65799363 | Msa0993300:three_prime_UTR | 35.0% | |
| TAGGACTTTATGAACTGACT+TGG | + | chr6_4:65799363-65799382 | Msa0993300:three_prime_UTR | 35.0% | |
| GAGTAACGTGACAGAGAAAT+TGG | + | chr6_4:65795643-65795662 | Msa0993300:CDS | 40.0% | |
| ! | GAGTGAGTTTTTCCTCAGAA+GGG | - | chr6_4:65795688-65795707 | None:intergenic | 40.0% |
| ! | TGAGTGAGTTTTTCCTCAGA+AGG | - | chr6_4:65795689-65795708 | None:intergenic | 40.0% |
| GAGGAAAAACTCACTCAACT+TGG | + | chr6_4:65795692-65795711 | Msa0993300:CDS | 40.0% | |
| !! | AACTCACTCAACTTGGTGTT+AGG | + | chr6_4:65795699-65795718 | Msa0993300:CDS | 40.0% |
| GATGTAAATGGTATGTGACC+TGG | + | chr6_4:65796016-65796035 | Msa0993300:intron | 40.0% | |
| AATGGTATGTGACCTGGTAA+CGG | + | chr6_4:65796022-65796041 | Msa0993300:intron | 40.0% | |
| GTAGGTGACTCAATAGATCT+TGG | + | chr6_4:65796055-65796074 | Msa0993300:intron | 40.0% | |
| TGACTCAATAGATCTTGGAG+AGG | + | chr6_4:65796060-65796079 | Msa0993300:intron | 40.0% | |
| CCTAAAATAACCCCACATAC+CGG | + | chr6_4:65796114-65796133 | Msa0993300:intron | 40.0% | |
| ACAAATACGGATATGGACAC+CGG | + | chr6_4:65796196-65796215 | Msa0993300:intron | 40.0% | |
| TGTCAAATTACTAGCTGTGC+CGG | - | chr6_4:65796244-65796263 | None:intergenic | 40.0% | |
| ! | TCATCAGATTAGGCGTTTTC+CGG | - | chr6_4:65796326-65796345 | None:intergenic | 40.0% |
| TACCGTTAAGAGTCTCACAT+TGG | - | chr6_4:65796384-65796403 | None:intergenic | 40.0% | |
| CCTAACAATCTCGACATTGT+TGG | - | chr6_4:65796526-65796545 | None:intergenic | 40.0% | |
| CCAACAATGTCGAGATTGTT+AGG | + | chr6_4:65796523-65796542 | Msa0993300:intron | 40.0% | |
| ! | GTTAGGCTTGACATTTTCCA+TGG | + | chr6_4:65796540-65796559 | Msa0993300:intron | 40.0% |
| AGATTTGAACTGGGTAACCA+TGG | - | chr6_4:65796560-65796579 | None:intergenic | 40.0% | |
| ATGGTTACCCAGTTCAAATC+TGG | + | chr6_4:65796559-65796578 | Msa0993300:intron | 40.0% | |
| TGGTTACCCAGTTCAAATCT+GGG | + | chr6_4:65796560-65796579 | Msa0993300:intron | 40.0% | |
| CAAGATCCCAGATTTGAACT+GGG | - | chr6_4:65796569-65796588 | None:intergenic | 40.0% | |
| ACAAGATCCCAGATTTGAAC+TGG | - | chr6_4:65796570-65796589 | None:intergenic | 40.0% | |
| TAGTGTTTCACACACCTAGA+CGG | + | chr6_4:65797100-65797119 | Msa0993300:intron | 40.0% | |
| TTAGCAAGTGAGCCTATGTT+TGG | - | chr6_4:65797151-65797170 | None:intergenic | 40.0% | |
| ! | GGCTCACTTGCTAAAGTTTA+AGG | + | chr6_4:65797157-65797176 | Msa0993300:intron | 40.0% |
| GTGAACCCAAACATGCAATA+TGG | - | chr6_4:65797265-65797284 | None:intergenic | 40.0% | |
| ! | GCATGTTTGGGTTCACAATA+AGG | + | chr6_4:65797269-65797288 | Msa0993300:intron | 40.0% |
| ! | CAAAGTTGAGTTTTCTCGTG+TGG | + | chr6_4:65797297-65797316 | Msa0993300:intron | 40.0% |
| TGAAGTTTCGCACTTTGTCT+TGG | + | chr6_4:65797683-65797702 | Msa0993300:intron | 40.0% | |
| !! | GTAGATTTTGGCCAGGTTAA+TGG | + | chr6_4:65797745-65797764 | Msa0993300:intron | 40.0% |
| TGCGAAAATGCCTACTCAAA+AGG | + | chr6_4:65797888-65797907 | Msa0993300:intron | 40.0% | |
| TTCAGCTAGCTACGTCAAAT+TGG | - | chr6_4:65798106-65798125 | None:intergenic | 40.0% | |
| AGCTGACCATACCAAATTCA+AGG | - | chr6_4:65798132-65798151 | None:intergenic | 40.0% | |
| TGCACATAGAAAGACCTCAT+TGG | - | chr6_4:65798225-65798244 | None:intergenic | 40.0% | |
| AATGAGGTCTTTCTATGTGC+AGG | + | chr6_4:65798224-65798243 | Msa0993300:intron | 40.0% | |
| CATATGCAATGATGTTGTGC+CGG | - | chr6_4:65798516-65798535 | None:intergenic | 40.0% | |
| AACACATGTTCAGGAACTCA+GGG | - | chr6_4:65798611-65798630 | None:intergenic | 40.0% | |
| AATTAGGCCAACACATGTTC+AGG | - | chr6_4:65798620-65798639 | None:intergenic | 40.0% | |
| ! | ACATGTGTTGGCCTAATTGT+TGG | + | chr6_4:65798622-65798641 | Msa0993300:intron | 40.0% |
| ! | CATGTGTTGGCCTAATTGTT+GGG | + | chr6_4:65798623-65798642 | Msa0993300:intron | 40.0% |
| GAATTGCAGTTACTGAAGAG+AGG | + | chr6_4:65798730-65798749 | Msa0993300:intron | 40.0% | |
| TCCTTAATGACTAACCCTGT+AGG | - | chr6_4:65798760-65798779 | None:intergenic | 40.0% | |
| CTGATCTAAGAGCTTAGCTT+TGG | + | chr6_4:65798871-65798890 | Msa0993300:intron | 40.0% | |
| !! | TCTAAGAGCTTAGCTTTGGT+AGG | + | chr6_4:65798875-65798894 | Msa0993300:intron | 40.0% |
| ! | TAAGTCCATGGGAATTTGCT+TGG | - | chr6_4:65799140-65799159 | None:intergenic | 40.0% |
| ! | ACTGACTCATTTGCTCCATT+TGG | - | chr6_4:65799212-65799231 | None:intergenic | 40.0% |
| ! | GACTTGGTTGTGTTTCCTAA+AGG | + | chr6_4:65799248-65799267 | Msa0993300:CDS | 40.0% |
| CAAGTACAACTCATCCCTTT+AGG | - | chr6_4:65799266-65799285 | None:intergenic | 40.0% | |
| CTAAAGGGATGAGTTGTACT+TGG | + | chr6_4:65799264-65799283 | Msa0993300:CDS | 40.0% | |
| GATTGAGAGAAACCCTTCTG+AGG | + | chr6_4:65795673-65795692 | Msa0993300:CDS | 45.0% | |
| !! | CTCAACTTGGTGTTAGGCAA+TGG | + | chr6_4:65795705-65795724 | Msa0993300:CDS | 45.0% |
| ACTATCAGACATCCGTTACC+AGG | - | chr6_4:65796037-65796056 | None:intergenic | 45.0% | |
| !! | GGTAACGGATGTCTGATAGT+AGG | + | chr6_4:65796037-65796056 | Msa0993300:intron | 45.0% |
| !! | CCGGTATGTGGGGTTATTTT+AGG | - | chr6_4:65796117-65796136 | None:intergenic | 45.0% |
| TCAATCCTCACCTCACAAAC+CGG | - | chr6_4:65796136-65796155 | None:intergenic | 45.0% | |
| !! | GTCAATATCCGTGTCGTTTC+CGG | - | chr6_4:65796218-65796237 | None:intergenic | 45.0% |
| GCACAGACACTCATCAGATT+AGG | - | chr6_4:65796336-65796355 | None:intergenic | 45.0% | |
| ! | TGAGCCTATGTTTGGTTCCA+CGG | - | chr6_4:65797143-65797162 | None:intergenic | 45.0% |
| !! | ATCGCCGATACCTTTTGAGT+AGG | - | chr6_4:65797901-65797920 | None:intergenic | 45.0% |
| GCGATACGTCTTGAATAGTC+TGG | + | chr6_4:65797916-65797935 | Msa0993300:intron | 45.0% | |
| ! | GTCTGGTTGATCAAGGCATT+TGG | + | chr6_4:65797933-65797952 | Msa0993300:intron | 45.0% |
| CTCTAGTGCAGTAGTGAAAC+TGG | + | chr6_4:65798150-65798169 | Msa0993300:intron | 45.0% | |
| CAACACATGTTCAGGAACTC+AGG | - | chr6_4:65798612-65798631 | None:intergenic | 45.0% | |
| CTGAGTTCCTGAACATGTGT+TGG | + | chr6_4:65798610-65798629 | Msa0993300:intron | 45.0% | |
| TAGAAACCTGCAGAAGCTGT+GGG | + | chr6_4:65798670-65798689 | Msa0993300:intron | 45.0% | |
| !! | GCCTACAGGGTTAGTCATTA+AGG | + | chr6_4:65798756-65798775 | Msa0993300:intron | 45.0% |
| TCCGTTATAAAAGATGGGGG+AGG | + | chr6_4:65798787-65798806 | Msa0993300:intron | 45.0% | |
| ! | CCCTCCCCCATCTTTTATAA+CGG | - | chr6_4:65798791-65798810 | None:intergenic | 45.0% |
| CCGTTATAAAAGATGGGGGA+GGG | + | chr6_4:65798788-65798807 | Msa0993300:intron | 45.0% | |
| GGTAGGAGTTCTTTGAACTC+TGG | + | chr6_4:65798892-65798911 | Msa0993300:intron | 45.0% | |
| ! | GAGTCAGTTGAATTTGGAGC+TGG | + | chr6_4:65799224-65799243 | Msa0993300:CDS | 45.0% |
| ! | TGAATTTGGAGCTGGTGACT+TGG | + | chr6_4:65799232-65799251 | Msa0993300:CDS | 45.0% |
| ! | GAAGCGTCTTGGTGGTTTGA+TGG | - | chr6_4:65795579-65795598 | None:intergenic | 50.0% |
| !! | AGATGAAGGAAGCGTCTTGG+TGG | - | chr6_4:65795587-65795606 | None:intergenic | 50.0% |
| !! | AGGAGATGAAGGAAGCGTCT+TGG | - | chr6_4:65795590-65795609 | None:intergenic | 50.0% |
| GCAATTCTCACCTCTCACGT+CGG | - | chr6_4:65795952-65795971 | None:intergenic | 50.0% | |
| ACCTCACAAACCGGTATGTG+GGG | - | chr6_4:65796127-65796146 | None:intergenic | 50.0% | |
| CACCTCACAAACCGGTATGT+GGG | - | chr6_4:65796128-65796147 | None:intergenic | 50.0% | |
| TCACCTCACAAACCGGTATG+TGG | - | chr6_4:65796129-65796148 | None:intergenic | 50.0% | |
| !! | ACATACCGGTTTGTGAGGTG+AGG | + | chr6_4:65796128-65796147 | Msa0993300:intron | 50.0% |
| TATGGACACCGGAAACGACA+CGG | + | chr6_4:65796207-65796226 | Msa0993300:intron | 50.0% | |
| CGACACGGATATTGACACAC+CGG | + | chr6_4:65796222-65796241 | Msa0993300:intron | 50.0% | |
| TCATGATACGTGTCCGACAC+CGG | + | chr6_4:65796304-65796323 | Msa0993300:intron | 50.0% | |
| ! | GATTAGGCGTTTTCCGGTGT+CGG | - | chr6_4:65796320-65796339 | None:intergenic | 50.0% |
| GATGAGTGTCTGTGCTTCAG+AGG | + | chr6_4:65796341-65796360 | Msa0993300:intron | 50.0% | |
| CACACCTAGACGGTATTCTG+AGG | + | chr6_4:65797110-65797129 | Msa0993300:intron | 50.0% | |
| GACACCTCAGAATACCGTCT+AGG | - | chr6_4:65797117-65797136 | None:intergenic | 50.0% | |
| !! | AGACGGTATTCTGAGGTGTC+TGG | + | chr6_4:65797117-65797136 | Msa0993300:intron | 50.0% |
| GTGACACATTTGGGCACCTA+GGG | + | chr6_4:65797592-65797611 | Msa0993300:intron | 50.0% | |
| ! | GTGGATTGCGCCCAACAATT+AGG | - | chr6_4:65798636-65798655 | None:intergenic | 50.0% |
| ! | TTCTAGAAGCTGCGCTTGTG+TGG | - | chr6_4:65798655-65798674 | None:intergenic | 50.0% |
| CTAGAAACCTGCAGAAGCTG+TGG | + | chr6_4:65798669-65798688 | Msa0993300:intron | 50.0% | |
| TGTATTCCCACAGCTTCTGC+AGG | - | chr6_4:65798679-65798698 | None:intergenic | 50.0% | |
| TGAAGAGAGGGAAGCCTACA+GGG | + | chr6_4:65798743-65798762 | Msa0993300:intron | 50.0% | |
| TTCTGGATGCTTCACCCTCT+AGG | - | chr6_4:65798816-65798835 | None:intergenic | 50.0% | |
| GTCCTCCAAGCAAATTCCCA+TGG | + | chr6_4:65799132-65799151 | Msa0993300:CDS | 50.0% | |
| ! | GTCCATGGGAATTTGCTTGG+AGG | - | chr6_4:65799137-65799156 | None:intergenic | 50.0% |
| TTGGGATGTGTCTGTTGCTG+TGG | + | chr6_4:65799283-65799302 | Msa0993300:CDS | 50.0% | |
| !!! | CCTCTCACGTCGGTTTTGTG+AGG | - | chr6_4:65795942-65795961 | None:intergenic | 55.0% |
| CCTCACAAAACCGACGTGAG+AGG | + | chr6_4:65795939-65795958 | Msa0993300:intron | 55.0% | |
| !! | ACCCCACATACCGGTTTGTG+AGG | + | chr6_4:65796123-65796142 | Msa0993300:intron | 55.0% |
| !! | TATTCTGAGGTGTCTGGCCG+TGG | + | chr6_4:65797123-65797142 | Msa0993300:intron | 55.0% |
| CTGGCCGTGGAACCAAACAT+AGG | + | chr6_4:65797136-65797155 | Msa0993300:intron | 55.0% | |
| GGTGACACATTTGGGCACCT+AGG | + | chr6_4:65797591-65797610 | Msa0993300:intron | 55.0% | |
| CTGAAGAGAGGGAAGCCTAC+AGG | + | chr6_4:65798742-65798761 | Msa0993300:intron | 55.0% | |
| AGATGGGGGAGGGAGCCTAG+AGG | + | chr6_4:65798798-65798817 | Msa0993300:intron | 65.0% | |
| GATGGGGGAGGGAGCCTAGA+GGG | + | chr6_4:65798799-65798818 | Msa0993300:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 65795518 | 65799585 | 65795518 | ID=Msa0993300;Name=Msa0993300 |
| chr6_4 | mRNA | 65795518 | 65799585 | 65795518 | ID=Msa0993300-mRNA-1;Parent=Msa0993300;Name=Msa0993300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123|1|1|1|1|1|2|257|98 |
| chr6_4 | exon | 65795518 | 65795732 | 65795518 | ID=Msa0993300-mRNA-1:exon:12260;Parent=Msa0993300-mRNA-1 |
| chr6_4 | exon | 65799124 | 65799585 | 65799124 | ID=Msa0993300-mRNA-1:exon:12261;Parent=Msa0993300-mRNA-1 |
| chr6_4 | five_prime_UTR | 65795518 | 65795640 | 65795518 | ID=Msa0993300-mRNA-1:five_prime_utr;Parent=Msa0993300-mRNA-1 |
| chr6_4 | CDS | 65795641 | 65795732 | 65795641 | ID=Msa0993300-mRNA-1:cds;Parent=Msa0993300-mRNA-1 |
| chr6_4 | CDS | 65799124 | 65799328 | 65799124 | ID=Msa0993300-mRNA-1:cds;Parent=Msa0993300-mRNA-1 |
| chr6_4 | three_prime_UTR | 65799329 | 65799585 | 65799329 | ID=Msa0993300-mRNA-1:three_prime_utr;Parent=Msa0993300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
