Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993510 | AES75765.2 | 78.723 | 235 | 11 | 3 | 1 | 196 | 1 | 235 | 1.66e-109 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993510 | G7KMG2 | 78.723 | 235 | 11 | 3 | 1 | 196 | 1 | 235 | 7.94e-110 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063940 | Msa0993510 | -0.819676 | 1.024887e-52 | -8.615850e-47 |
| Msa0742370 | Msa0993510 | 0.833437 | 5.336604e-56 | -8.615850e-47 |
| Msa0862480 | Msa0993510 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993510 | MtrunA17_Chr6g0476981 | 78.723 | 235 | 11 | 3 | 1 | 196 | 31 | 265 | 5.68e-113 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993510 | AT1G33330.1 | 58.683 | 167 | 38 | 2 | 60 | 196 | 86 | 251 | 1.33e-59 | 187 |
| Msa0993510 | AT1G33330.3 | 58.683 | 167 | 38 | 2 | 60 | 196 | 86 | 251 | 1.33e-59 | 187 |
| Msa0993510 | AT1G33330.2 | 58.683 | 167 | 38 | 2 | 60 | 196 | 86 | 251 | 1.33e-59 | 187 |
Find 64 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCATACCATTGCAAATTT+TGG | 0.076912 | 6_4:+66151488 | None:intergenic |
| ACAGGGAATGCAAGCTCTTT+TGG | 0.212000 | 6_4:-66151391 | Msa0993510:intron |
| TTGGCGGCGGCGGTGGTTAT+TGG | 0.230046 | 6_4:+66153192 | None:intergenic |
| TCAGATATTGGTTCACAAAT+TGG | 0.249489 | 6_4:-66151521 | Msa0993510:CDS |
| CCATTTCGCACTGTCGCATT+AGG | 0.343868 | 6_4:+66153136 | None:intergenic |
| CTAATGCGACAGTGCGAAAT+GGG | 0.385509 | 6_4:-66153135 | Msa0993510:CDS |
| CCTCCGAAGTCATCAATTAG+AGG | 0.388048 | 6_4:-66151545 | Msa0993510:CDS |
| GCCGTGGTTGGCGGCGGCGG+TGG | 0.393992 | 6_4:+66153185 | None:intergenic |
| GGTATGGAGTGGAGTGAGAT+TGG | 0.397143 | 6_4:+66153216 | None:intergenic |
| TCAATTAGAGGGTCAGATAT+TGG | 0.403891 | 6_4:-66151533 | Msa0993510:CDS |
| ACCGCCGTGGTTGGCGGCGG+CGG | 0.409987 | 6_4:+66153182 | None:intergenic |
| CCTAATGCGACAGTGCGAAA+TGG | 0.425486 | 6_4:-66153136 | Msa0993510:CDS |
| CGTCTTAAACATTTACCTAC+TGG | 0.431074 | 6_4:-66153054 | Msa0993510:intron |
| ATCTGATGATTCGCTTAGAA+AGG | 0.432213 | 6_4:-66150966 | Msa0993510:CDS |
| TTATGTTGCAGGTTATCTAC+TGG | 0.440441 | 6_4:-66151010 | Msa0993510:intron |
| TGAATTGTTGTTTGAGAGTG+AGG | 0.457175 | 6_4:+66153301 | None:intergenic |
| GTATGGAGTGGAGTGAGATT+GGG | 0.461618 | 6_4:+66153217 | None:intergenic |
| TAGGTAACCGCCGTGGTTGG+CGG | 0.468896 | 6_4:+66153176 | None:intergenic |
| TAGTCATGCCCCGTGACGTC+TGG | 0.477189 | 6_4:+66153448 | None:intergenic |
| GCATTAGGTCATCGTCGGTT+AGG | 0.477729 | 6_4:+66153151 | None:intergenic |
| GCGGCGGCGGTGGTTATTGG+AGG | 0.484598 | 6_4:+66153195 | None:intergenic |
| GGTCATCGTCGGTTAGGTCT+AGG | 0.493313 | 6_4:+66153157 | None:intergenic |
| TCAGATGCTGCAAAATATCT+CGG | 0.495967 | 6_4:-66151339 | Msa0993510:CDS |
| ACATTCAAAACCTCTGGTCC+TGG | 0.498473 | 6_4:-66153111 | Msa0993510:CDS |
| GATGATGGAGAAAGTGGTGG+TGG | 0.503216 | 6_4:+66153262 | None:intergenic |
| AAATGATCTGCGAGCATCAA+AGG | 0.520593 | 6_4:-66150939 | Msa0993510:CDS |
| ATGGGGACATTCAAAACCTC+TGG | 0.526355 | 6_4:-66153117 | Msa0993510:CDS |
| GTAACCGCCGTGGTTGGCGG+CGG | 0.528971 | 6_4:+66153179 | None:intergenic |
| GTCTAGGTAACCGCCGTGGT+TGG | 0.531366 | 6_4:+66153173 | None:intergenic |
| ACCACCGCCGCCGCCAACCA+CGG | 0.532057 | 6_4:-66153186 | Msa0993510:CDS |
| CAGATGCTGCAAAATATCTC+GGG | 0.537897 | 6_4:-66151338 | Msa0993510:intron |
| GGATGAAGGTTGGTTTGAAG+AGG | 0.539984 | 6_4:+66153322 | None:intergenic |
| TTGTTACGATGCTGACCACC+AGG | 0.540086 | 6_4:+66153093 | None:intergenic |
| TAGTTCAGTAAAACATCAGA+AGG | 0.548855 | 6_4:+66150912 | None:intergenic |
| GGCGGTGGTTATTGGAGGTA+TGG | 0.551759 | 6_4:+66153200 | None:intergenic |
| TTGTTTGAGAGTGAGGATGA+AGG | 0.552107 | 6_4:+66153308 | None:intergenic |
| TTGAGAGTGAGGATGAAGGT+TGG | 0.567489 | 6_4:+66153312 | None:intergenic |
| ATAACCACACCAGACGTCAC+GGG | 0.571287 | 6_4:-66153457 | Msa0993510:five_prime_UTR |
| AAAATGGATGATGGAGAAAG+TGG | 0.573070 | 6_4:+66153256 | None:intergenic |
| TGGTTATTGGAGGTATGGAG+TGG | 0.581543 | 6_4:+66153205 | None:intergenic |
| AGGTAAATGTTTAAGACGAA+CGG | 0.582308 | 6_4:+66153059 | None:intergenic |
| CGACTATTGTAGGATGATGA+TGG | 0.582662 | 6_4:+66153422 | None:intergenic |
| AATAACCACACCAGACGTCA+CGG | 0.588330 | 6_4:-66153458 | Msa0993510:five_prime_UTR |
| CTCCGAAGTCATCAATTAGA+GGG | 0.591506 | 6_4:-66151544 | Msa0993510:CDS |
| TATCTACTGGAGCACTGTCT+CGG | 0.597134 | 6_4:-66150997 | Msa0993510:CDS |
| CAATAACCCAAAATTTGCAA+TGG | 0.599001 | 6_4:-66151495 | Msa0993510:intron |
| TAATTGATGACTTCGGAGGA+AGG | 0.602100 | 6_4:+66151549 | None:intergenic |
| GGTTATTATATCACGTGGCA+AGG | 0.608436 | 6_4:+66153474 | None:intergenic |
| AGGATCTGAAGAAGCTCTCG+AGG | 0.609913 | 6_4:+66151569 | None:intergenic |
| GACCCTCTAATTGATGACTT+CGG | 0.625335 | 6_4:+66151542 | None:intergenic |
| CTGTCGCATTAGGTCATCGT+CGG | 0.631954 | 6_4:+66153146 | None:intergenic |
| TTCAAAACCTCTGGTCCTGG+TGG | 0.638280 | 6_4:-66153108 | Msa0993510:CDS |
| ATGATGGAGAAAGTGGTGGT+GGG | 0.640982 | 6_4:+66153263 | None:intergenic |
| GAGGCGGTGAATAAGCATCA+AGG | 0.649822 | 6_4:+66151588 | None:intergenic |
| ATGCTGACCACCAGGACCAG+AGG | 0.652907 | 6_4:+66153101 | None:intergenic |
| TAACCACACCAGACGTCACG+GGG | 0.656387 | 6_4:-66153456 | Msa0993510:five_prime_UTR |
| CCTCTAATTGATGACTTCGG+AGG | 0.662115 | 6_4:+66151545 | None:intergenic |
| TCACAAAACAGTCACAACAA+TGG | 0.668993 | 6_4:-66153355 | Msa0993510:exon |
| ACCGCCGCCGCCAACCACGG+CGG | 0.675098 | 6_4:-66153183 | Msa0993510:CDS |
| TAATGCGACAGTGCGAAATG+GGG | 0.678210 | 6_4:-66153134 | Msa0993510:CDS |
| ATCTGAAGAAGCTCTCGAGG+CGG | 0.680421 | 6_4:+66151572 | None:intergenic |
| ATGGATGATGGAGAAAGTGG+TGG | 0.696593 | 6_4:+66153259 | None:intergenic |
| GGTGTGGTTATTATATCACG+TGG | 0.717472 | 6_4:+66153469 | None:intergenic |
| TTAGGTCTAGGTAACCGCCG+TGG | 0.773380 | 6_4:+66153169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAATTTTTTTTTATTAC+TGG | - | chr6_4:66151414-66151433 | Msa0993510:intron | 10.0% |
| !!! | TATTTGTGTTTAATTTTTAT+GGG | + | chr6_4:66151455-66151474 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTATGATTTTTCT+AGG | - | chr6_4:66152025-66152044 | Msa0993510:intron | 10.0% |
| !! | ATAAATAAAAAATATAACGT+CGG | - | chr6_4:66152526-66152545 | Msa0993510:intron | 10.0% |
| !!! | TAATTTTTTTTTATTACTGG+CGG | - | chr6_4:66151417-66151436 | Msa0993510:intron | 15.0% |
| !!! | ATTTGTGTTTAATTTTTATG+GGG | + | chr6_4:66151454-66151473 | None:intergenic | 15.0% |
| !!! | CTATTTGTGTTTAATTTTTA+TGG | + | chr6_4:66151456-66151475 | None:intergenic | 15.0% |
| !!! | ACTTTTTATTGTAATATCAT+GGG | - | chr6_4:66151983-66152002 | Msa0993510:intron | 15.0% |
| !! | CTTATGTATAAGATATAATA+AGG | - | chr6_4:66152203-66152222 | Msa0993510:intron | 15.0% |
| !! | AAGTAATTACTATAAGTAAA+GGG | + | chr6_4:66152701-66152720 | None:intergenic | 15.0% |
| !! | TAAGTAATTACTATAAGTAA+AGG | + | chr6_4:66152702-66152721 | None:intergenic | 15.0% |
| !! | TGAAAAATCATAAGTATATT+TGG | + | chr6_4:66152982-66153001 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTATTACTGGC+GGG | - | chr6_4:66151418-66151437 | Msa0993510:intron | 20.0% |
| !!! | TGATTTTCTCAAATAATCAT+CGG | + | chr6_4:66151554-66151573 | None:intergenic | 20.0% |
| !!! | CACTTTTTATTGTAATATCA+TGG | - | chr6_4:66151982-66152001 | Msa0993510:intron | 20.0% |
| !!! | TGTTGCAATCTTTTAAAAAT+TGG | - | chr6_4:66152433-66152452 | Msa0993510:intron | 20.0% |
| !! | ATTGAATTCTTGAGAAATTT+AGG | - | chr6_4:66152464-66152483 | Msa0993510:intron | 20.0% |
| !!! | TATACTTATGATTTTTCAAC+AGG | - | chr6_4:66152984-66153003 | Msa0993510:intron | 20.0% |
| !!! | ATACTTATGATTTTTCAACA+GGG | - | chr6_4:66152985-66153004 | Msa0993510:intron | 20.0% |
| !! | ATTGTTTATTTATTTGGGTA+TGG | - | chr6_4:66153116-66153135 | Msa0993510:CDS | 20.0% |
| !! | TAAATGTCATAGTAACAAAT+GGG | + | chr6_4:66153157-66153176 | None:intergenic | 20.0% |
| !! | TTAAATGTCATAGTAACAAA+TGG | + | chr6_4:66153158-66153177 | None:intergenic | 20.0% |
| !!! | AAGCATTGTAATTTATGATT+AGG | - | chr6_4:66153176-66153195 | Msa0993510:CDS | 20.0% |
| !! | AGCATTGTAATTTATGATTA+GGG | - | chr6_4:66153177-66153196 | Msa0993510:CDS | 20.0% |
| !!! | CGAATTTTGATGTGAAAAAA+TGG | + | chr6_4:66151156-66151175 | None:intergenic | 25.0% |
| ! | AAGTAATAAACAGAAAACCT+GGG | + | chr6_4:66151373-66151392 | None:intergenic | 25.0% |
| ! | AAAGTAATAAACAGAAAACC+TGG | + | chr6_4:66151374-66151393 | None:intergenic | 25.0% |
| !! | TGAAAATGTAGAGACTATTT+TGG | - | chr6_4:66151904-66151923 | Msa0993510:intron | 25.0% |
| !! | GAAAATGTAGAGACTATTTT+GGG | - | chr6_4:66151905-66151924 | Msa0993510:intron | 25.0% |
| !!! | TTTTGGGTTTTGTTTTTGTA+AGG | - | chr6_4:66151921-66151940 | Msa0993510:intron | 25.0% |
| !!! | TTTGGGTTTTGTTTTTGTAA+GGG | - | chr6_4:66151922-66151941 | Msa0993510:intron | 25.0% |
| !! | TTTTTATGATTTTTCTAGGC+TGG | - | chr6_4:66152029-66152048 | Msa0993510:intron | 25.0% |
| ! | CACATTGCAATTTACAAATT+TGG | - | chr6_4:66152407-66152426 | Msa0993510:intron | 25.0% |
| ! | TTCTCAAGAATTCAATCTTT+GGG | + | chr6_4:66152460-66152479 | None:intergenic | 25.0% |
| ! | TTTCTCAAGAATTCAATCTT+TGG | + | chr6_4:66152461-66152480 | None:intergenic | 25.0% |
| !! | TTCTTGAGAAATTTAGGTTA+TGG | - | chr6_4:66152470-66152489 | Msa0993510:intron | 25.0% |
| !! | AATTTAGGTTATGGTTCAAA+AGG | - | chr6_4:66152479-66152498 | Msa0993510:intron | 25.0% |
| !!! | ATTGCAAATTTTGGGTTATT+GGG | + | chr6_4:66152899-66152918 | None:intergenic | 25.0% |
| ! | AAATGTCATAGTAACAAATG+GGG | + | chr6_4:66153156-66153175 | None:intergenic | 25.0% |
| TGATGTGAAAAAATGGATGA+TGG | + | chr6_4:66151149-66151168 | None:intergenic | 30.0% | |
| ! | AGGTAAATGTTTAAGACGAA+CGG | + | chr6_4:66151337-66151356 | None:intergenic | 30.0% |
| ! | TTTTCATGTCAGTGACAAAT+TGG | + | chr6_4:66151890-66151909 | None:intergenic | 30.0% |
| ! | AATTTTCTTACGGGTCAATT+TGG | + | chr6_4:66151949-66151968 | None:intergenic | 30.0% |
| ! | ATCCTTCACAATTTTCTTAC+GGG | + | chr6_4:66151958-66151977 | None:intergenic | 30.0% |
| ! | GATCCTTCACAATTTTCTTA+CGG | + | chr6_4:66151959-66151978 | None:intergenic | 30.0% |
| ! | AGGTTGAATTGTTTTCACAT+AGG | - | chr6_4:66152223-66152242 | Msa0993510:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr6_4:66152252-66152271 | Msa0993510:intron | 30.0% |
| !! | AACAAATGGTTTGTTTGGAT+TGG | + | chr6_4:66152361-66152380 | None:intergenic | 30.0% |
| CTTTCTTTCTTGATTTAGTC+AGG | - | chr6_4:66152771-66152790 | Msa0993510:intron | 30.0% | |
| !! | TCAGATATTGGTTCACAAAT+TGG | - | chr6_4:66152872-66152891 | Msa0993510:intron | 30.0% |
| !!! | CATTGCAAATTTTGGGTTAT+TGG | + | chr6_4:66152900-66152919 | None:intergenic | 30.0% |
| CAATAACCCAAAATTTGCAA+TGG | - | chr6_4:66152898-66152917 | Msa0993510:intron | 30.0% | |
| ! | AGCATACCATTGCAAATTTT+GGG | + | chr6_4:66152907-66152926 | None:intergenic | 30.0% |
| !!! | GATCTTATTTTTGCAGTTGA+TGG | - | chr6_4:66153024-66153043 | Msa0993510:intron | 30.0% |
| ! | CATTACACTGAACATTTTCA+TGG | + | chr6_4:66153203-66153222 | None:intergenic | 30.0% |
| CATGAAAATGTTCAGTGTAA+TGG | - | chr6_4:66153201-66153220 | Msa0993510:CDS | 30.0% | |
| AATGTTCAGTGTAATGGTAA+TGG | - | chr6_4:66153207-66153226 | Msa0993510:CDS | 30.0% | |
| GAACAATTCGATAACTAGTT+TGG | - | chr6_4:66153350-66153369 | Msa0993510:exon | 30.0% | |
| !!! | TGTTTTGTGTCGACTATTGT+AGG | + | chr6_4:66150984-66151003 | None:intergenic | 35.0% |
| ! | TTTTGTGAGTTCTCAATCAC+AGG | + | chr6_4:66151026-66151045 | None:intergenic | 35.0% |
| TCACAAAACAGTCACAACAA+TGG | - | chr6_4:66151038-66151057 | Msa0993510:intron | 35.0% | |
| !! | TGAATTGTTGTTTGAGAGTG+AGG | + | chr6_4:66151095-66151114 | None:intergenic | 35.0% |
| !! | AAAATGGATGATGGAGAAAG+TGG | + | chr6_4:66151140-66151159 | None:intergenic | 35.0% |
| CGTCTTAAACATTTACCTAC+TGG | - | chr6_4:66151339-66151358 | Msa0993510:CDS | 35.0% | |
| TCTCAAATAATCATCGGTCT+CGG | + | chr6_4:66151548-66151567 | None:intergenic | 35.0% | |
| ! | TTTATGTGTCGATGTCTTGT+CGG | - | chr6_4:66151588-66151607 | Msa0993510:CDS | 35.0% |
| ATCGAAACAGATAGTGAAGA+AGG | + | chr6_4:66152132-66152151 | None:intergenic | 35.0% | |
| TGAGTTTATCTACCTGCATT+GGG | + | chr6_4:66152332-66152351 | None:intergenic | 35.0% | |
| TTGAGTTTATCTACCTGCAT+TGG | + | chr6_4:66152333-66152352 | None:intergenic | 35.0% | |
| !! | AGGGAAACAAATGGTTTGTT+TGG | + | chr6_4:66152366-66152385 | None:intergenic | 35.0% |
| ACAAACCATTTGTTTCCCTT+TGG | - | chr6_4:66152367-66152386 | Msa0993510:intron | 35.0% | |
| AAACACCAAAGGGAAACAAA+TGG | + | chr6_4:66152375-66152394 | None:intergenic | 35.0% | |
| ! | ACTTCTAAGGAAACACCAAA+GGG | + | chr6_4:66152385-66152404 | None:intergenic | 35.0% |
| ATTGCAATGTGACACTTCTA+AGG | + | chr6_4:66152398-66152417 | None:intergenic | 35.0% | |
| !! | TATAACGTCGGTTCAATCTT+TGG | - | chr6_4:66152538-66152557 | Msa0993510:intron | 35.0% |
| !! | ATAACGTCGGTTCAATCTTT+GGG | - | chr6_4:66152539-66152558 | Msa0993510:intron | 35.0% |
| TCAATTAGAGGGTCAGATAT+TGG | - | chr6_4:66152860-66152879 | Msa0993510:intron | 35.0% | |
| ! | GAGCATACCATTGCAAATTT+TGG | + | chr6_4:66152908-66152927 | None:intergenic | 35.0% |
| ATTTGCAATGGTATGCTCAA+TGG | - | chr6_4:66152910-66152929 | Msa0993510:intron | 35.0% | |
| TCAGATGCTGCAAAATATCT+CGG | - | chr6_4:66153054-66153073 | Msa0993510:intron | 35.0% | |
| ! | TAGCCAAGGAATGAATTTTC+AGG | + | chr6_4:66153254-66153273 | None:intergenic | 35.0% |
| GAAAATTCATTCCTTGGCTA+AGG | - | chr6_4:66153254-66153273 | Msa0993510:CDS | 35.0% | |
| ! | GTGTTTGCTAATTATGTTGC+AGG | - | chr6_4:66153372-66153391 | Msa0993510:five_prime_UTR | 35.0% |
| TTATGTTGCAGGTTATCTAC+TGG | - | chr6_4:66153383-66153402 | Msa0993510:five_prime_UTR | 35.0% | |
| ATCTGATGATTCGCTTAGAA+AGG | - | chr6_4:66153427-66153446 | Msa0993510:five_prime_UTR | 35.0% | |
| GGTTATTATATCACGTGGCA+AGG | + | chr6_4:66150922-66150941 | None:intergenic | 40.0% | |
| GGTGTGGTTATTATATCACG+TGG | + | chr6_4:66150927-66150946 | None:intergenic | 40.0% | |
| CGACTATTGTAGGATGATGA+TGG | + | chr6_4:66150974-66150993 | None:intergenic | 40.0% | |
| TTGTTTGAGAGTGAGGATGA+AGG | + | chr6_4:66151088-66151107 | None:intergenic | 40.0% | |
| !! | TAGTCCCTGACATTTTAGTC+CGG | - | chr6_4:66151473-66151492 | Msa0993510:intron | 40.0% |
| ATGTCCGGACTAAAATGTCA+GGG | + | chr6_4:66151480-66151499 | None:intergenic | 40.0% | |
| TATGTCCGGACTAAAATGTC+AGG | + | chr6_4:66151481-66151500 | None:intergenic | 40.0% | |
| CTTCATATGCCTGGACAAAT+TGG | - | chr6_4:66151668-66151687 | Msa0993510:intron | 40.0% | |
| TCATATGTGTCCTGTTGTGT+AGG | - | chr6_4:66151790-66151809 | Msa0993510:intron | 40.0% | |
| !! | CTCTTGGATTAGTTATGTCC+CGG | + | chr6_4:66151828-66151847 | None:intergenic | 40.0% |
| AAATTGGTCCCATGTAAGTC+GGG | + | chr6_4:66151874-66151893 | None:intergenic | 40.0% | |
| CAAATTGGTCCCATGTAAGT+CGG | + | chr6_4:66151875-66151894 | None:intergenic | 40.0% | |
| GACCCGTAAGAAAATTGTGA+AGG | - | chr6_4:66151953-66151972 | Msa0993510:intron | 40.0% | |
| ! | TAAGAGCTATAAGAGAGCGT+AGG | + | chr6_4:66152100-66152119 | None:intergenic | 40.0% |
| CGCTCTCTTATAGCTCTTAA+AGG | - | chr6_4:66152101-66152120 | Msa0993510:intron | 40.0% | |
| AAGTGCTTGTCATGATAAGC+AGG | - | chr6_4:66152180-66152199 | Msa0993510:intron | 40.0% | |
| GTAATAAGTTCTCCCAATGC+AGG | - | chr6_4:66152317-66152336 | Msa0993510:intron | 40.0% | |
| ! | CACTTCTAAGGAAACACCAA+AGG | + | chr6_4:66152386-66152405 | None:intergenic | 40.0% |
| ! | CGAAGTACTAAAACAGACGT+CGG | - | chr6_4:66152593-66152612 | Msa0993510:intron | 40.0% |
| ! | TAATTGATGACTTCGGAGGA+AGG | + | chr6_4:66152847-66152866 | None:intergenic | 40.0% |
| CTCCGAAGTCATCAATTAGA+GGG | - | chr6_4:66152849-66152868 | Msa0993510:intron | 40.0% | |
| ! | GACCCTCTAATTGATGACTT+CGG | + | chr6_4:66152854-66152873 | None:intergenic | 40.0% |
| CAGATGCTGCAAAATATCTC+GGG | - | chr6_4:66153055-66153074 | Msa0993510:CDS | 40.0% | |
| TAGAAGAAACTCCTTAGCCA+AGG | + | chr6_4:66153268-66153287 | None:intergenic | 40.0% | |
| AAATGATCTGCGAGCATCAA+AGG | - | chr6_4:66153454-66153473 | Msa0993510:five_prime_UTR | 40.0% | |
| AATAACCACACCAGACGTCA+CGG | - | chr6_4:66150935-66150954 | Msa0993510:CDS | 45.0% | |
| !! | GGATGAAGGTTGGTTTGAAG+AGG | + | chr6_4:66151074-66151093 | None:intergenic | 45.0% |
| TTGAGAGTGAGGATGAAGGT+TGG | + | chr6_4:66151084-66151103 | None:intergenic | 45.0% | |
| ! | ATGATGGAGAAAGTGGTGGT+GGG | + | chr6_4:66151133-66151152 | None:intergenic | 45.0% |
| !! | ATGGATGATGGAGAAAGTGG+TGG | + | chr6_4:66151137-66151156 | None:intergenic | 45.0% |
| GTATGGAGTGGAGTGAGATT+GGG | + | chr6_4:66151179-66151198 | None:intergenic | 45.0% | |
| ! | TGGTTATTGGAGGTATGGAG+TGG | + | chr6_4:66151191-66151210 | None:intergenic | 45.0% |
| CTAATGCGACAGTGCGAAAT+GGG | - | chr6_4:66151258-66151277 | Msa0993510:intron | 45.0% | |
| TAATGCGACAGTGCGAAATG+GGG | - | chr6_4:66151259-66151278 | Msa0993510:intron | 45.0% | |
| ATGGGGACATTCAAAACCTC+TGG | - | chr6_4:66151276-66151295 | Msa0993510:intron | 45.0% | |
| ACATTCAAAACCTCTGGTCC+TGG | - | chr6_4:66151282-66151301 | Msa0993510:intron | 45.0% | |
| GTGTCAGTGCTTCATATGTC+CGG | + | chr6_4:66151495-66151514 | None:intergenic | 45.0% | |
| !! | GACATATGAAGCACTGACAC+CGG | - | chr6_4:66151495-66151514 | Msa0993510:intron | 45.0% |
| ! | CTCCTCGGATTAGATATGTC+CGG | + | chr6_4:66151640-66151659 | None:intergenic | 45.0% |
| TATGAAGCATGGACACTCCT+CGG | + | chr6_4:66151655-66151674 | None:intergenic | 45.0% | |
| TTGTCCAGGCATATGAAGCA+TGG | + | chr6_4:66151666-66151685 | None:intergenic | 45.0% | |
| ACTGTCCATACGTTGTAAGC+CGG | + | chr6_4:66151696-66151715 | None:intergenic | 45.0% | |
| TATGGACAGTGGAAACGACA+CGG | - | chr6_4:66151706-66151725 | Msa0993510:intron | 45.0% | |
| CGGGACATAACTAATCCAAG+AGG | - | chr6_4:66151826-66151845 | Msa0993510:intron | 45.0% | |
| ! | ATGATTTTTCTAGGCTGGCG+AGG | - | chr6_4:66152034-66152053 | Msa0993510:intron | 45.0% |
| GGCGTTTAATTGCTGAAGCA+CGG | + | chr6_4:66152079-66152098 | None:intergenic | 45.0% | |
| ! | CCTCTAATTGATGACTTCGG+AGG | + | chr6_4:66152851-66152870 | None:intergenic | 45.0% |
| CCTCCGAAGTCATCAATTAG+AGG | - | chr6_4:66152848-66152867 | Msa0993510:intron | 45.0% | |
| ! | ACAGGGAATGCAAGCTCTTT+TGG | - | chr6_4:66153002-66153021 | Msa0993510:intron | 45.0% |
| ATGGTCTCAAGTGTGTACCA+TGG | - | chr6_4:66153226-66153245 | Msa0993510:CDS | 45.0% | |
| TGGTCTCAAGTGTGTACCAT+GGG | - | chr6_4:66153227-66153246 | Msa0993510:CDS | 45.0% | |
| !! | GAATGAATTTTCAGGCCCCA+TGG | + | chr6_4:66153246-66153265 | None:intergenic | 45.0% |
| GGGCCTGAAAATTCATTCCT+TGG | - | chr6_4:66153248-66153267 | Msa0993510:CDS | 45.0% | |
| !! | TATCTACTGGAGCACTGTCT+CGG | - | chr6_4:66153396-66153415 | Msa0993510:five_prime_UTR | 45.0% |
| !! | TATTTAATTGTTTATTTATT+TGG | - | chr6_4:66153110-66153129 | Msa0993510:CDS | 5.0% |
| !! | ATTTAATTGTTTATTTATTT+GGG | - | chr6_4:66153111-66153130 | Msa0993510:CDS | 5.0% |
| ATAACCACACCAGACGTCAC+GGG | - | chr6_4:66150936-66150955 | Msa0993510:CDS | 50.0% | |
| !! | GATGATGGAGAAAGTGGTGG+TGG | + | chr6_4:66151134-66151153 | None:intergenic | 50.0% |
| GGTATGGAGTGGAGTGAGAT+TGG | + | chr6_4:66151180-66151199 | None:intergenic | 50.0% | |
| ! | GCATTAGGTCATCGTCGGTT+AGG | + | chr6_4:66151245-66151264 | None:intergenic | 50.0% |
| CTGTCGCATTAGGTCATCGT+CGG | + | chr6_4:66151250-66151269 | None:intergenic | 50.0% | |
| CCATTTCGCACTGTCGCATT+AGG | + | chr6_4:66151260-66151279 | None:intergenic | 50.0% | |
| CCTAATGCGACAGTGCGAAA+TGG | - | chr6_4:66151257-66151276 | Msa0993510:intron | 50.0% | |
| TTCAAAACCTCTGGTCCTGG+TGG | - | chr6_4:66151285-66151304 | Msa0993510:intron | 50.0% | |
| TTGTTACGATGCTGACCACC+AGG | + | chr6_4:66151303-66151322 | None:intergenic | 50.0% | |
| TGTCAGACACTGTCGTGTGT+CGG | - | chr6_4:66151611-66151630 | Msa0993510:intron | 50.0% | |
| CACCGGACATATCTAATCCG+AGG | - | chr6_4:66151635-66151654 | Msa0993510:intron | 50.0% | |
| GTGTCCATGCTTCATATGCC+TGG | - | chr6_4:66151659-66151678 | Msa0993510:intron | 50.0% | |
| ATGCCTGGACAAATTGGTCC+CGG | - | chr6_4:66151674-66151693 | Msa0993510:intron | 50.0% | |
| CTGTCCATACGTTGTAAGCC+GGG | + | chr6_4:66151695-66151714 | None:intergenic | 50.0% | |
| GGCTTACAACGTATGGACAG+TGG | - | chr6_4:66151695-66151714 | Msa0993510:intron | 50.0% | |
| GTGTCCTGTTGTGTAGGTGT+CGG | - | chr6_4:66151796-66151815 | Msa0993510:intron | 50.0% | |
| TCGAGTGTCCCGACTTACAT+GGG | - | chr6_4:66151863-66151882 | Msa0993510:intron | 50.0% | |
| ! | TTTTCTAGGCTGGCGAGGAT+CGG | - | chr6_4:66152039-66152058 | Msa0993510:intron | 50.0% |
| GAGGCGGTGAATAAGCATCA+AGG | + | chr6_4:66152808-66152827 | None:intergenic | 50.0% | |
| ATCTGAAGAAGCTCTCGAGG+CGG | + | chr6_4:66152824-66152843 | None:intergenic | 50.0% | |
| AGGATCTGAAGAAGCTCTCG+AGG | + | chr6_4:66152827-66152846 | None:intergenic | 50.0% | |
| GGTCTCAAGTGTGTACCATG+GGG | - | chr6_4:66153228-66153247 | Msa0993510:CDS | 50.0% | |
| TAACCACACCAGACGTCACG+GGG | - | chr6_4:66150937-66150956 | Msa0993510:CDS | 55.0% | |
| GGCGGTGGTTATTGGAGGTA+TGG | + | chr6_4:66151196-66151215 | None:intergenic | 55.0% | |
| TTAGGTCTAGGTAACCGCCG+TGG | + | chr6_4:66151227-66151246 | None:intergenic | 55.0% | |
| ! | GGTCATCGTCGGTTAGGTCT+AGG | + | chr6_4:66151239-66151258 | None:intergenic | 55.0% |
| ACCTACTGGTATCATCGCCC+AGG | - | chr6_4:66151353-66151372 | Msa0993510:CDS | 55.0% | |
| ACCTGGGCGATGATACCAGT+AGG | + | chr6_4:66151357-66151376 | None:intergenic | 55.0% | |
| AAGCCGGGACCAATTTGTCC+AGG | + | chr6_4:66151680-66151699 | None:intergenic | 55.0% | |
| TGGTCCCGGCTTACAACGTA+TGG | - | chr6_4:66151688-66151707 | Msa0993510:intron | 55.0% | |
| GTGTCCGACACCTACACAAC+AGG | + | chr6_4:66151803-66151822 | None:intergenic | 55.0% | |
| !! | GTGTAGGTGTCGGACACTAC+CGG | - | chr6_4:66151806-66151825 | Msa0993510:intron | 55.0% |
| !! | TGTAGGTGTCGGACACTACC+GGG | - | chr6_4:66151807-66151826 | Msa0993510:intron | 55.0% |
| ACTGAAGCACGGACACCTCT+TGG | + | chr6_4:66151844-66151863 | None:intergenic | 55.0% | |
| GTCGAGTGTCCCGACTTACA+TGG | - | chr6_4:66151862-66151881 | Msa0993510:intron | 55.0% | |
| TAGTCATGCCCCGTGACGTC+TGG | + | chr6_4:66150948-66150967 | None:intergenic | 60.0% | |
| TAGGTAACCGCCGTGGTTGG+CGG | + | chr6_4:66151220-66151239 | None:intergenic | 60.0% | |
| GTCTAGGTAACCGCCGTGGT+TGG | + | chr6_4:66151223-66151242 | None:intergenic | 60.0% | |
| ATGCTGACCACCAGGACCAG+AGG | + | chr6_4:66151295-66151314 | None:intergenic | 60.0% | |
| ACACCGGACACTGCACGACA+CGG | - | chr6_4:66151511-66151530 | Msa0993510:CDS | 60.0% | |
| TGTCCGTGTCGTGCAGTGTC+CGG | + | chr6_4:66151517-66151536 | None:intergenic | 60.0% | |
| CACTGTCGTGTGTCGGACAC+CGG | - | chr6_4:66151618-66151637 | Msa0993510:intron | 60.0% | |
| CGGGACACTCGACTGAAGCA+CGG | + | chr6_4:66151855-66151874 | None:intergenic | 60.0% | |
| ACACGACACACCTGCAGCGT+CGG | - | chr6_4:66152640-66152659 | Msa0993510:intron | 60.0% | |
| !! | CAATGTAGCACCGACGCTGC+AGG | + | chr6_4:66152653-66152672 | None:intergenic | 60.0% |
| !! | CTGCAGCGTCGGTGCTACAT+TGG | - | chr6_4:66152651-66152670 | Msa0993510:intron | 60.0% |
| ATGCCCCGTGACGTCTGGTG+TGG | + | chr6_4:66150943-66150962 | None:intergenic | 65.0% | |
| TTGGCGGCGGCGGTGGTTAT+TGG | + | chr6_4:66151204-66151223 | None:intergenic | 65.0% | |
| GCGGCGGCGGTGGTTATTGG+AGG | + | chr6_4:66151201-66151220 | None:intergenic | 70.0% | |
| GTAACCGCCGTGGTTGGCGG+CGG | + | chr6_4:66151217-66151236 | None:intergenic | 70.0% | |
| ACCACCGCCGCCGCCAACCA+CGG | - | chr6_4:66151207-66151226 | Msa0993510:intron | 75.0% | |
| ! | ACCGCCGCCGCCAACCACGG+CGG | - | chr6_4:66151210-66151229 | Msa0993510:intron | 80.0% |
| ! | ACCGCCGTGGTTGGCGGCGG+CGG | + | chr6_4:66151214-66151233 | None:intergenic | 80.0% |
| ! | GCCGTGGTTGGCGGCGGCGG+TGG | + | chr6_4:66151211-66151230 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 66150916 | 66153499 | 66150916 | ID=Msa0993510;Name=Msa0993510 |
| chr6_4 | mRNA | 66150916 | 66153499 | 66150916 | ID=Msa0993510-mRNA-1;Parent=Msa0993510;Name=Msa0993510-mRNA-1;_AED=0.26;_eAED=0.26;_QI=141|0.66|0.75|1|1|1|4|0|203 |
| chr6_4 | exon | 66150916 | 66151021 | 66150916 | ID=Msa0993510-mRNA-1:exon:12386;Parent=Msa0993510-mRNA-1 |
| chr6_4 | exon | 66151339 | 66151409 | 66151339 | ID=Msa0993510-mRNA-1:exon:12385;Parent=Msa0993510-mRNA-1 |
| chr6_4 | exon | 66151496 | 66151626 | 66151496 | ID=Msa0993510-mRNA-1:exon:12384;Parent=Msa0993510-mRNA-1 |
| chr6_4 | exon | 66153055 | 66153499 | 66153055 | ID=Msa0993510-mRNA-1:exon:12383;Parent=Msa0993510-mRNA-1 |
| chr6_4 | five_prime_UTR | 66153359 | 66153499 | 66153359 | ID=Msa0993510-mRNA-1:five_prime_utr;Parent=Msa0993510-mRNA-1 |
| chr6_4 | CDS | 66153055 | 66153358 | 66153055 | ID=Msa0993510-mRNA-1:cds;Parent=Msa0993510-mRNA-1 |
| chr6_4 | CDS | 66151496 | 66151626 | 66151496 | ID=Msa0993510-mRNA-1:cds;Parent=Msa0993510-mRNA-1 |
| chr6_4 | CDS | 66151339 | 66151409 | 66151339 | ID=Msa0993510-mRNA-1:cds;Parent=Msa0993510-mRNA-1 |
| chr6_4 | CDS | 66150916 | 66151021 | 66150916 | ID=Msa0993510-mRNA-1:cds;Parent=Msa0993510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
