Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063940 | XP_013466066.1 | 94.170 | 446 | 8 | 1 | 1 | 446 | 1 | 428 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063940 | sp|Q9LN62|RRA3_ARATH | 68.904 | 447 | 119 | 4 | 1 | 446 | 1 | 428 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063940 | A0A072VPP4 | 94.170 | 446 | 8 | 1 | 1 | 446 | 1 | 428 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0063940 | -0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa0011440 | Msa0063940 | -0.805770 | 1.136846e-49 | -8.615850e-47 |
| Msa0013270 | Msa0063940 | 0.801190 | 1.012196e-48 | -8.615850e-47 |
| Msa0028690 | Msa0063940 | 0.800600 | 1.335445e-48 | -8.615850e-47 |
| Msa0033220 | Msa0063940 | 0.840478 | 8.488232e-58 | -8.615850e-47 |
| Msa0038150 | Msa0063940 | -0.809481 | 1.852662e-50 | -8.615850e-47 |
| Msa0040470 | Msa0063940 | 0.800746 | 1.247440e-48 | -8.615850e-47 |
| Msa0042950 | Msa0063940 | -0.804073 | 2.573795e-49 | -8.615850e-47 |
| Msa0044160 | Msa0063940 | 0.814080 | 1.847911e-51 | -8.615850e-47 |
| Msa0044440 | Msa0063940 | 0.802488 | 5.478894e-49 | -8.615850e-47 |
| Msa0044530 | Msa0063940 | -0.814388 | 1.580716e-51 | -8.615850e-47 |
| Msa0045810 | Msa0063940 | 0.810480 | 1.128936e-50 | -8.615850e-47 |
| Msa0063940 | Msa0066890 | -0.812479 | 4.151998e-51 | -8.615850e-47 |
| Msa0063940 | Msa0073110 | 0.804071 | 2.575570e-49 | -8.615850e-47 |
| Msa0063940 | Msa0079880 | 0.808236 | 3.419813e-50 | -8.615850e-47 |
| Msa0063940 | Msa0080030 | 0.824690 | 7.041657e-54 | -8.615850e-47 |
| Msa0063940 | Msa0091240 | -0.809433 | 1.897007e-50 | -8.615850e-47 |
| Msa0063940 | Msa0095810 | -0.807586 | 4.700911e-50 | -8.615850e-47 |
| Msa0063940 | Msa0100540 | 0.805191 | 1.503812e-49 | -8.615850e-47 |
| Msa0063940 | Msa0101530 | 0.871719 | 5.514616e-67 | -8.615850e-47 |
| Msa0063940 | Msa0105650 | 0.813643 | 2.307707e-51 | -8.615850e-47 |
| Msa0063940 | Msa0127770 | 0.800347 | 1.504060e-48 | -8.615850e-47 |
| Msa0063940 | Msa0133140 | -0.823409 | 1.406871e-53 | -8.615850e-47 |
| Msa0063940 | Msa0136180 | -0.802489 | 5.474802e-49 | -8.615850e-47 |
| Msa0063940 | Msa0136870 | -0.809443 | 1.887585e-50 | -8.615850e-47 |
| Msa0063940 | Msa0142430 | 0.800238 | 1.582545e-48 | -8.615850e-47 |
| Msa0063940 | Msa0151380 | -0.806501 | 7.978690e-50 | -8.615850e-47 |
| Msa0063940 | Msa0154880 | -0.824531 | 7.674025e-54 | -8.615850e-47 |
| Msa0063940 | Msa0161480 | 0.801121 | 1.045286e-48 | -8.615850e-47 |
| Msa0063940 | Msa0165640 | 0.823849 | 1.109570e-53 | -8.615850e-47 |
| Msa0063940 | Msa0183310 | -0.849834 | 2.507499e-60 | -8.615850e-47 |
| Msa0063940 | Msa0183710 | 0.810027 | 1.413480e-50 | -8.615850e-47 |
| Msa0063940 | Msa0187540 | 0.805074 | 1.591132e-49 | -8.615850e-47 |
| Msa0063940 | Msa0217060 | 0.841622 | 4.250534e-58 | -8.615850e-47 |
| Msa0063940 | Msa0219280 | 0.800177 | 1.628766e-48 | -8.615850e-47 |
| Msa0063940 | Msa0241750 | 0.806118 | 9.608083e-50 | -8.615850e-47 |
| Msa0063940 | Msa0256920 | 0.848172 | 7.260090e-60 | -8.615850e-47 |
| Msa0063940 | Msa0269220 | -0.815831 | 7.557432e-52 | -8.615850e-47 |
| Msa0063940 | Msa0282960 | 0.838873 | 2.220265e-57 | -8.615850e-47 |
| Msa0063940 | Msa0313900 | 0.811070 | 8.412894e-51 | -8.615850e-47 |
| Msa0063940 | Msa0320170 | 0.818604 | 1.797795e-52 | -8.615850e-47 |
| Msa0063940 | Msa0354970 | -0.841574 | 4.374997e-58 | -8.615850e-47 |
| Msa0063940 | Msa0355080 | -0.879212 | 1.498670e-69 | -8.615850e-47 |
| Msa0063940 | Msa0365210 | 0.860346 | 2.202603e-63 | -8.615850e-47 |
| Msa0063940 | Msa0375330 | -0.813692 | 2.250218e-51 | -8.615850e-47 |
| Msa0063940 | Msa0375790 | 0.811920 | 5.500011e-51 | -8.615850e-47 |
| Msa0063940 | Msa0384590 | 0.845163 | 4.819416e-59 | -8.615850e-47 |
| Msa0063940 | Msa0402070 | -0.832092 | 1.151506e-55 | -8.615850e-47 |
| Msa0063940 | Msa0412580 | -0.806961 | 6.378951e-50 | -8.615850e-47 |
| Msa0063940 | Msa0434660 | 0.836442 | 9.336376e-57 | -8.615850e-47 |
| Msa0063940 | Msa0437440 | -0.846112 | 2.664846e-59 | -8.615850e-47 |
| Msa0063940 | Msa0437520 | 0.809206 | 2.121562e-50 | -8.615850e-47 |
| Msa0063940 | Msa0450330 | -0.806434 | 8.241575e-50 | -8.615850e-47 |
| Msa0063940 | Msa0480900 | -0.844239 | 8.549684e-59 | -8.615850e-47 |
| Msa0063940 | Msa0481630 | 0.806847 | 6.742082e-50 | -8.615850e-47 |
| Msa0063940 | Msa0521610 | 0.819905 | 9.084419e-53 | -8.615850e-47 |
| Msa0063940 | Msa0522540 | 0.840760 | 7.161893e-58 | -8.615850e-47 |
| Msa0063940 | Msa0523420 | -0.800901 | 1.159387e-48 | -8.615850e-47 |
| Msa0063940 | Msa0526150 | 0.836102 | 1.139091e-56 | -8.615850e-47 |
| Msa0063940 | Msa0527220 | 0.811239 | 7.733459e-51 | -8.615850e-47 |
| Msa0063940 | Msa0543560 | 0.800264 | 1.563522e-48 | -8.615850e-47 |
| Msa0063940 | Msa0565370 | -0.809678 | 1.680360e-50 | -8.615850e-47 |
| Msa0063940 | Msa0566940 | -0.825187 | 5.373190e-54 | -8.615850e-47 |
| Msa0063940 | Msa0567330 | 0.816356 | 5.768467e-52 | -8.615850e-47 |
| Msa0063940 | Msa0576320 | 0.800249 | 1.574831e-48 | -8.615850e-47 |
| Msa0063940 | Msa0579080 | 0.869500 | 2.955478e-66 | -8.615850e-47 |
| Msa0063940 | Msa0579160 | 0.890650 | 8.131106e-74 | -8.615850e-47 |
| Msa0063940 | Msa0579220 | 0.896789 | 2.633001e-76 | -8.615850e-47 |
| Msa0063940 | Msa0590620 | -0.855698 | 5.298974e-62 | -8.615850e-47 |
| Msa0063940 | Msa0603310 | 0.808784 | 2.612692e-50 | -8.615850e-47 |
| Msa0063940 | Msa0606820 | 0.809076 | 2.262715e-50 | -8.615850e-47 |
| Msa0063940 | Msa0610690 | 0.893342 | 6.875300e-75 | -8.615850e-47 |
| Msa0063940 | Msa0644330 | 0.854411 | 1.252821e-61 | -8.615850e-47 |
| Msa0063940 | Msa0657710 | 0.821945 | 3.081893e-53 | -8.615850e-47 |
| Msa0063940 | Msa0674480 | 0.832075 | 1.162287e-55 | -8.615850e-47 |
| Msa0063940 | Msa0676570 | -0.814580 | 1.432944e-51 | -8.615850e-47 |
| Msa0063940 | Msa0701800 | -0.808545 | 2.938550e-50 | -8.615850e-47 |
| Msa0063940 | Msa0702800 | 0.825142 | 5.507426e-54 | -8.615850e-47 |
| Msa0063940 | Msa0707330 | 0.804620 | 1.979353e-49 | -8.615850e-47 |
| Msa0063940 | Msa0712860 | 0.826857 | 2.154456e-54 | -8.615850e-47 |
| Msa0063940 | Msa0726170 | -0.816995 | 4.148772e-52 | -8.615850e-47 |
| Msa0063940 | Msa0736920 | 0.812220 | 4.731436e-51 | -8.615850e-47 |
| Msa0063940 | Msa0742370 | -0.889804 | 1.744724e-73 | -8.615850e-47 |
| Msa0063940 | Msa0758780 | -0.811298 | 7.508105e-51 | -8.615850e-47 |
| Msa0063940 | Msa0758810 | -0.817016 | 4.103082e-52 | -8.615850e-47 |
| Msa0063940 | Msa0778570 | 0.803861 | 2.848518e-49 | -8.615850e-47 |
| Msa0063940 | Msa0779450 | -0.854452 | 1.219357e-61 | -8.615850e-47 |
| Msa0063940 | Msa0795750 | 0.870062 | 1.937956e-66 | -8.615850e-47 |
| Msa0063940 | Msa0800480 | 0.832856 | 7.443904e-56 | -8.615850e-47 |
| Msa0063940 | Msa0805390 | 0.815695 | 8.103946e-52 | -8.615850e-47 |
| Msa0063940 | Msa0823480 | -0.858550 | 7.626230e-63 | -8.615850e-47 |
| Msa0063940 | Msa0828960 | 0.826930 | 2.070639e-54 | -8.615850e-47 |
| Msa0063940 | Msa0839680 | 0.814486 | 1.503786e-51 | -8.615850e-47 |
| Msa0063940 | Msa0842140 | 0.805768 | 1.138232e-49 | -8.615850e-47 |
| Msa0063940 | Msa0851850 | 0.809054 | 2.287596e-50 | -8.615850e-47 |
| Msa0063940 | Msa0862480 | -0.880879 | 3.813851e-70 | -8.615850e-47 |
| Msa0063940 | Msa0909260 | 0.808098 | 3.660368e-50 | -8.615850e-47 |
| Msa0063940 | Msa0940910 | 0.821726 | 3.463209e-53 | -8.615850e-47 |
| Msa0063940 | Msa0964020 | 0.800942 | 1.137616e-48 | -8.615850e-47 |
| Msa0063940 | Msa0967780 | 0.809512 | 1.823940e-50 | -8.615850e-47 |
| Msa0063940 | Msa0973080 | -0.822555 | 2.225010e-53 | -8.615850e-47 |
| Msa0063940 | Msa0993510 | -0.819676 | 1.024887e-52 | -8.615850e-47 |
| Msa0063940 | Msa1011140 | -0.805003 | 1.646109e-49 | -8.615850e-47 |
| Msa0063940 | Msa1015360 | 0.875223 | 3.648764e-68 | -8.615850e-47 |
| Msa0063940 | Msa1019420 | 0.808678 | 2.752500e-50 | -8.615850e-47 |
| Msa0063940 | Msa1022420 | 0.808689 | 2.737496e-50 | -8.615850e-47 |
| Msa0063940 | Msa1031350 | 0.810393 | 1.178848e-50 | -8.615850e-47 |
| Msa0063940 | Msa1032470 | 0.840893 | 6.609471e-58 | -8.615850e-47 |
| Msa0063940 | Msa1039440 | -0.843677 | 1.209200e-58 | -8.615850e-47 |
| Msa0063940 | Msa1044250 | 0.855044 | 8.216220e-62 | -8.615850e-47 |
| Msa0063940 | Msa1056890 | 0.818030 | 2.424956e-52 | -8.615850e-47 |
| Msa0063940 | Msa1070460 | 0.806228 | 9.110444e-50 | -8.615850e-47 |
| Msa0063940 | Msa1082410 | 0.817685 | 2.900500e-52 | -8.615850e-47 |
| Msa0063940 | Msa1088400 | -0.817000 | 4.137976e-52 | -8.615850e-47 |
| Msa0063940 | Msa1092310 | 0.820545 | 6.481889e-53 | -8.615850e-47 |
| Msa0063940 | Msa1094810 | 0.827409 | 1.589934e-54 | -8.615850e-47 |
| Msa0063940 | Msa1106590 | 0.836087 | 1.149016e-56 | -8.615850e-47 |
| Msa0063940 | Msa1114690 | 0.815044 | 1.130846e-51 | -8.615850e-47 |
| Msa0063940 | Msa1128520 | -0.811092 | 8.323882e-51 | -8.615850e-47 |
| Msa0063940 | Msa1133750 | 0.826697 | 2.352529e-54 | -8.615850e-47 |
| Msa0063940 | Msa1154320 | 0.833783 | 4.373000e-56 | -8.615850e-47 |
| Msa0063940 | Msa1165460 | 0.823951 | 1.050395e-53 | -8.615850e-47 |
| Msa0063940 | Msa1184680 | 0.828407 | 9.146149e-55 | -8.615850e-47 |
| Msa0063940 | Msa1196130 | 0.808533 | 2.955458e-50 | -8.615850e-47 |
| Msa0063940 | Msa1197720 | 0.844300 | 8.234565e-59 | -8.615850e-47 |
| Msa0063940 | Msa1202800 | 0.813876 | 2.049747e-51 | -8.615850e-47 |
| Msa0063940 | Msa1203650 | 0.817734 | 2.827460e-52 | -8.615850e-47 |
| Msa0063940 | Msa1207390 | 0.812002 | 5.278585e-51 | -8.615850e-47 |
| Msa0063940 | Msa1207430 | 0.812918 | 3.329248e-51 | -8.615850e-47 |
| Msa0063940 | Msa1207920 | -0.876501 | 1.327645e-68 | -8.615850e-47 |
| Msa0063940 | Msa1212830 | 0.810665 | 1.029786e-50 | -8.615850e-47 |
| Msa0063940 | Msa1213040 | 0.804501 | 2.096018e-49 | -8.615850e-47 |
| Msa0063940 | Msa1219530 | -0.811326 | 7.404863e-51 | -8.615850e-47 |
| Msa0063940 | Msa1251410 | 0.848213 | 7.074085e-60 | -8.615850e-47 |
| Msa0063940 | Msa1255210 | 0.808130 | 3.603297e-50 | -8.615850e-47 |
| Msa0063940 | Msa1257610 | 0.817973 | 2.497503e-52 | -8.615850e-47 |
| Msa0063940 | Msa1260220 | 0.817272 | 3.594454e-52 | -8.615850e-47 |
| Msa0063940 | Msa1268390 | 0.812748 | 3.626273e-51 | -8.615850e-47 |
| Msa0063940 | Msa1283930 | 0.809139 | 2.193010e-50 | -8.615850e-47 |
| Msa0063940 | Msa1284020 | 0.818492 | 1.905944e-52 | -8.615850e-47 |
| Msa0063940 | Msa1295650 | 0.804409 | 2.190506e-49 | -8.615850e-47 |
| Msa0063940 | Msa1301280 | -0.819346 | 1.218844e-52 | -8.615850e-47 |
| Msa0063940 | Msa1322960 | 0.810302 | 1.233205e-50 | -8.615850e-47 |
| Msa0063940 | Msa1323070 | 0.825454 | 4.645634e-54 | -8.615850e-47 |
| Msa0063940 | Msa1331570 | -0.879980 | 7.997371e-70 | -8.615850e-47 |
| Msa0063940 | Msa1333220 | -0.825478 | 4.585579e-54 | -8.615850e-47 |
| Msa0063940 | Msa1343600 | 0.812314 | 4.512012e-51 | -8.615850e-47 |
| Msa0063940 | Msa1348170 | -0.808001 | 3.838021e-50 | -8.615850e-47 |
| Msa0063940 | Msa1351990 | 0.829005 | 6.556296e-55 | -8.615850e-47 |
| Msa0063940 | Msa1352580 | 0.809084 | 2.253763e-50 | -8.615850e-47 |
| Msa0063940 | Msa1352600 | -0.822155 | 2.756180e-53 | -8.615850e-47 |
| Msa0063940 | Msa1364350 | -0.802906 | 4.490981e-49 | -8.615850e-47 |
| Msa0063940 | Msa1368390 | 0.803795 | 2.938735e-49 | -8.615850e-47 |
| Msa0063940 | Msa1384700 | 0.936413 | 1.808605e-97 | -8.615850e-47 |
| Msa0063940 | Msa1387450 | -0.805636 | 1.213384e-49 | -8.615850e-47 |
| Msa0063940 | Msa1387570 | 0.816725 | 4.768767e-52 | -8.615850e-47 |
| Msa0063940 | Msa1391500 | 0.801580 | 8.418711e-49 | -8.615850e-47 |
| Msa0063940 | Msa1396200 | -0.852023 | 6.059838e-61 | -8.615850e-47 |
| Msa0063940 | Msa1408390 | 0.815926 | 7.198633e-52 | -8.615850e-47 |
| Msa0063940 | Msa1409360 | -0.808066 | 3.716783e-50 | -8.615850e-47 |
| Msa0063940 | Msa1421630 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
| Msa0063940 | Msa1422860 | 0.853560 | 2.203699e-61 | -8.615850e-47 |
| Msa0063940 | Msa1428230 | -0.847700 | 9.795334e-60 | -8.615850e-47 |
| Msa0063940 | Msa1433360 | 0.829155 | 6.028217e-55 | -8.615850e-47 |
| Msa0063940 | Msa1437780 | 0.800166 | 1.637363e-48 | -8.615850e-47 |
| Msa0063940 | Msa1439250 | 0.817966 | 2.506171e-52 | -8.615850e-47 |
| Msa0063940 | Msa1439930 | 0.868865 | 4.751480e-66 | -8.615850e-47 |
| Msa0063940 | Msa1445530 | 0.801229 | 9.937783e-49 | -8.615850e-47 |
| Msa0063940 | Msa1459130 | -0.809123 | 2.210561e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063940 | MtrunA17_Chr1g0154701 | 94.170 | 446 | 8 | 1 | 1 | 446 | 1 | 428 | 0.0 | 862 |
| Msa0063940 | MtrunA17_Chr4g0034611 | 72.321 | 448 | 110 | 3 | 1 | 446 | 1 | 436 | 0.0 | 676 |
| Msa0063940 | MtrunA17_Chr4g0034621 | 69.005 | 442 | 124 | 3 | 5 | 445 | 7 | 436 | 0.0 | 617 |
| Msa0063940 | MtrunA17_Chr4g0034641 | 64.706 | 442 | 138 | 4 | 5 | 445 | 7 | 431 | 0.0 | 583 |
| Msa0063940 | MtrunA17_Chr4g0034661 | 67.120 | 441 | 118 | 4 | 5 | 445 | 7 | 420 | 0.0 | 579 |
| Msa0063940 | MtrunA17_Chr4g0034651 | 64.399 | 441 | 137 | 3 | 5 | 445 | 40 | 460 | 0.0 | 575 |
| Msa0063940 | MtrunA17_Chr4g0034631 | 63.801 | 442 | 140 | 4 | 5 | 445 | 7 | 429 | 0.0 | 565 |
| Msa0063940 | MtrunA17_Chr5g0408171 | 27.805 | 205 | 131 | 6 | 163 | 362 | 103 | 295 | 8.78e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063940 | AT1G19360.1 | 68.904 | 447 | 119 | 4 | 1 | 446 | 1 | 428 | 0.0 | 637 |
| Msa0063940 | AT1G19360.2 | 68.904 | 447 | 119 | 4 | 1 | 446 | 1 | 428 | 0.0 | 637 |
| Msa0063940 | AT1G75110.1 | 66.816 | 446 | 130 | 3 | 1 | 446 | 1 | 428 | 0.0 | 622 |
| Msa0063940 | AT1G75120.1 | 60.142 | 424 | 132 | 2 | 22 | 445 | 16 | 402 | 0.0 | 523 |
| Msa0063940 | AT2G35610.1 | 26.848 | 257 | 153 | 9 | 177 | 416 | 134 | 372 | 1.66e-12 | 70.1 |
Find 108 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTTGATGAACCTAAAA+TGG | 0.118559 | 1_2:+24707122 | Msa0063940:CDS |
| TGTTGTTTGAGTTGACTTTA+AGG | 0.186128 | 1_2:+24705071 | Msa0063940:five_prime_UTR |
| AGTTGGCATATCTAATTATT+TGG | 0.214194 | 1_2:+24706807 | Msa0063940:CDS |
| TATGCCAACTTTCTTGATAT+TGG | 0.231969 | 1_2:-24706794 | None:intergenic |
| CCCCTTTGATTATATTTATA+GGG | 0.245145 | 1_2:+24707038 | Msa0063940:CDS |
| TTCATCCTTGCAAGTTTATC+AGG | 0.257490 | 1_2:-24707459 | None:intergenic |
| ACCCCTTTGATTATATTTAT+AGG | 0.264534 | 1_2:+24707037 | Msa0063940:CDS |
| CATAGCAATCATACAGCTTA+TGG | 0.265461 | 1_2:+24707090 | Msa0063940:CDS |
| TTTAGCTCCTTTCTACTTAA+GGG | 0.285829 | 1_2:+24705451 | Msa0063940:CDS |
| TAAAGAGGTCGTTGTTGTTC+TGG | 0.289152 | 1_2:+24706732 | Msa0063940:CDS |
| CTTAGCTAATTAATCTTACT+TGG | 0.292242 | 1_2:+24707813 | Msa0063940:three_prime_UTR |
| ATGCTCATACCATGAGAATA+TGG | 0.294158 | 1_2:+24707157 | Msa0063940:CDS |
| GAACCTTACTGTTCATAAAA+AGG | 0.300928 | 1_2:-24707365 | None:intergenic |
| AAACACAAGGCTGGTCCTTT+TGG | 0.309663 | 1_2:+24706616 | Msa0063940:CDS |
| TTCAACGCATTAACTTGTTC+TGG | 0.347234 | 1_2:-24706463 | None:intergenic |
| AATTAATCTTACTTGGATCT+TGG | 0.358924 | 1_2:+24707820 | Msa0063940:three_prime_UTR |
| TTCTCAGAGTCGTGTTCAAC+TGG | 0.361961 | 1_2:-24705020 | None:intergenic |
| AGCTCAATTGAAGGAATTGT+TGG | 0.375607 | 1_2:-24707210 | None:intergenic |
| TATCAAAATCGAAATCAATA+TGG | 0.388493 | 1_2:+24707557 | Msa0063940:three_prime_UTR |
| GGTGGGAATCATGCTGTCTC+TGG | 0.396405 | 1_2:+24706931 | Msa0063940:CDS |
| CCTTCACATCCTGGTTATGA+TGG | 0.408046 | 1_2:+24707309 | Msa0063940:CDS |
| TCCGAGATGCGGTGATTGAA+TGG | 0.416396 | 1_2:-24705163 | None:intergenic |
| CCCTAGATTGGCAAAACTCT+TGG | 0.417448 | 1_2:+24706693 | Msa0063940:CDS |
| TTCCACTCTACTACAACAAT+TGG | 0.419689 | 1_2:-24707614 | None:intergenic |
| TGATGAACCTAAAATGGGTT+GGG | 0.421735 | 1_2:+24707128 | Msa0063940:CDS |
| AAGAAGAACGCCGATGAAAA+CGG | 0.426281 | 1_2:-24705195 | None:intergenic |
| TTCTGTTATTCCCGATGAAT+CGG | 0.434960 | 1_2:+24706666 | Msa0063940:CDS |
| TAATGTGTTGGAGATGTTAC+AGG | 0.437641 | 1_2:+24706762 | Msa0063940:CDS |
| CCCCGATGGTTCTGATTAGT+AGG | 0.441819 | 1_2:+24707533 | Msa0063940:exon |
| TCCCTATAAATATAATCAAA+GGG | 0.442068 | 1_2:-24707039 | None:intergenic |
| ACCAACCTTGTGACTGAGAA+TGG | 0.449721 | 1_2:-24705279 | None:intergenic |
| GAATTCTGAGCTGAAGAAGC+AGG | 0.473704 | 1_2:+24706513 | Msa0063940:CDS |
| TCTAATGGAGAAGCTGCGTT+TGG | 0.475422 | 1_2:+24706543 | Msa0063940:CDS |
| ATCCCTATAAATATAATCAA+AGG | 0.485270 | 1_2:-24707040 | None:intergenic |
| GAAGCAGGTGAAAGGTCTAA+TGG | 0.486719 | 1_2:+24706528 | Msa0063940:CDS |
| TGAATCGGTGAACCCTAGAT+TGG | 0.487843 | 1_2:+24706681 | Msa0063940:CDS |
| CGATCTAAAAGCTCAATTGA+AGG | 0.489088 | 1_2:-24707219 | None:intergenic |
| ATTGAATCAACACCTTGATC+CGG | 0.489958 | 1_2:-24706898 | None:intergenic |
| TAGTTGAGTTCTATGTCAAC+GGG | 0.490164 | 1_2:+24707487 | Msa0063940:CDS |
| GGAAATTGCTATTTATAAAG+AGG | 0.490420 | 1_2:+24706717 | Msa0063940:CDS |
| GTTGATTCAATTGCCAAGTC+GGG | 0.491275 | 1_2:+24706910 | Msa0063940:CDS |
| ACGGAACAGTTTGTTGTGCT+TGG | 0.491386 | 1_2:+24706589 | Msa0063940:CDS |
| AATGGAGAAGCTGCGTTTGG+CGG | 0.496977 | 1_2:+24706546 | Msa0063940:CDS |
| TTGATGAACCTAAAATGGGT+TGG | 0.498626 | 1_2:+24707127 | Msa0063940:CDS |
| TGCTCATACCATGAGAATAT+GGG | 0.499575 | 1_2:+24707158 | Msa0063940:CDS |
| TCCTACTAATCAGAACCATC+GGG | 0.500121 | 1_2:-24707534 | None:intergenic |
| TCTAGGGTTCACCGATTCAT+CGG | 0.501111 | 1_2:-24706677 | None:intergenic |
| CTAGGGTTCACCGATTCATC+GGG | 0.503259 | 1_2:-24706676 | None:intergenic |
| AAACATACCCTTAAGTAGAA+AGG | 0.503794 | 1_2:-24705458 | None:intergenic |
| AGAATATGGGTATATAACTC+TGG | 0.505845 | 1_2:+24707171 | Msa0063940:CDS |
| TTGAGAGAGTTTCTGCAACT+AGG | 0.508202 | 1_2:+24706970 | Msa0063940:CDS |
| TTCACCAATATCAAGAAAGT+TGG | 0.508424 | 1_2:+24706790 | Msa0063940:CDS |
| AACAACAACAACACAACCAC+TGG | 0.509584 | 1_2:-24705052 | None:intergenic |
| GGCTTTCTAAAGAGAAAGCA+TGG | 0.511884 | 1_2:+24707253 | Msa0063940:CDS |
| AGGTTACAGCGTTCTCCTCT+CGG | 0.515400 | 1_2:+24706990 | Msa0063940:CDS |
| CACTCTACTACAACAATTGG+AGG | 0.517175 | 1_2:-24707611 | None:intergenic |
| GTCTTTGATGAACCTAAAAT+GGG | 0.519326 | 1_2:+24707123 | Msa0063940:CDS |
| GCTGTTTATCAAATTTCGAT+CGG | 0.522069 | 1_2:-24705098 | None:intergenic |
| ATCCTACTAATCAGAACCAT+CGG | 0.522896 | 1_2:-24707535 | None:intergenic |
| TATAGAAGAGACCCGGATCA+AGG | 0.525636 | 1_2:+24706886 | Msa0063940:CDS |
| AGCATGATTCCCACCCGACT+TGG | 0.527468 | 1_2:-24706923 | None:intergenic |
| GCGTTTGGCGGAGCAAGGAA+AGG | 0.528394 | 1_2:+24706558 | Msa0063940:CDS |
| TAGATTGGCAAAACTCTTGG+CGG | 0.530183 | 1_2:+24706696 | Msa0063940:CDS |
| TCCGGGTCTCTTCTATAGAC+AGG | 0.531058 | 1_2:-24706880 | None:intergenic |
| CAGAGTCGTGTTCAACTGGA+TGG | 0.532666 | 1_2:-24705016 | None:intergenic |
| GATTCAATTGCCAAGTCGGG+TGG | 0.535736 | 1_2:+24706913 | Msa0063940:CDS |
| TTGAATCAACACCTTGATCC+GGG | 0.540173 | 1_2:-24706897 | None:intergenic |
| TGTTGATTCAATTGCCAAGT+CGG | 0.547442 | 1_2:+24706909 | Msa0063940:CDS |
| AAGCTGCGTTTGGCGGAGCA+AGG | 0.554092 | 1_2:+24706553 | Msa0063940:CDS |
| CTCCAATTGTTGTAGTAGAG+TGG | 0.556926 | 1_2:+24707612 | Msa0063940:three_prime_UTR |
| CCATCATAACCAGGATGTGA+AGG | 0.557644 | 1_2:-24707309 | None:intergenic |
| GTAGTTGAGTTCTATGTCAA+CGG | 0.558544 | 1_2:+24707486 | Msa0063940:CDS |
| ATTTGATAAACAGCAATGGC+AGG | 0.559173 | 1_2:+24705107 | Msa0063940:exon |
| TCTGGCTAACACTAATGTGT+TGG | 0.561756 | 1_2:+24706750 | Msa0063940:CDS |
| AGAGCCTTGACAGTGCCAAA+AGG | 0.564867 | 1_2:-24706631 | None:intergenic |
| ACCATTCAATCACCGCATCT+CGG | 0.566295 | 1_2:+24705162 | Msa0063940:CDS |
| GAGCTGAAGAAGCAGGTGAA+AGG | 0.566632 | 1_2:+24706520 | Msa0063940:CDS |
| TATTTATAGGGATTCAGATG+TGG | 0.569522 | 1_2:+24707050 | Msa0063940:CDS |
| TGTTGGAGATGTTACAGGTA+TGG | 0.571269 | 1_2:+24706767 | Msa0063940:CDS |
| CGTTTGGCGGAGCAAGGAAA+GGG | 0.575655 | 1_2:+24706559 | Msa0063940:CDS |
| GTTATATACCCATATTCTCA+TGG | 0.587662 | 1_2:-24707166 | None:intergenic |
| CGAAATTTGATAAACAGCAA+TGG | 0.589731 | 1_2:+24705103 | Msa0063940:exon |
| TAGTTAACATGTACAATCAC+AGG | 0.592948 | 1_2:-24707432 | None:intergenic |
| GCAAGGAAAGGGTCATGCTA+CGG | 0.593930 | 1_2:+24706570 | Msa0063940:CDS |
| ATCATCCTGATAAACTTGCA+AGG | 0.604744 | 1_2:+24707454 | Msa0063940:CDS |
| CATCATAACCAGGATGTGAA+GGG | 0.619342 | 1_2:-24707308 | None:intergenic |
| ATTCAATTGCCAAGTCGGGT+GGG | 0.620463 | 1_2:+24706914 | Msa0063940:CDS |
| TCCTGTCTATAGAAGAGACC+CGG | 0.625262 | 1_2:+24706879 | Msa0063940:CDS |
| GATTCATCGGGAATAACAGA+AGG | 0.626071 | 1_2:-24706664 | None:intergenic |
| GCGCTCGACAGTTTCCCCGA+TGG | 0.627821 | 1_2:+24707519 | Msa0063940:CDS |
| GCATGAAGTCCATCATAACC+AGG | 0.631266 | 1_2:-24707318 | None:intergenic |
| CCCTATAAATATAATCAAAG+GGG | 0.636439 | 1_2:-24707038 | None:intergenic |
| TTTCTCTTTAGAAAGCCGAT+CGG | 0.638101 | 1_2:-24707247 | None:intergenic |
| TCATGCTGCAAAGAGAACAA+TGG | 0.639030 | 1_2:+24707335 | Msa0063940:CDS |
| GATGTGGAGTCAATGTCAGA+TGG | 0.642589 | 1_2:+24707066 | Msa0063940:CDS |
| GGCAACGGCGATCCGAGATG+CGG | 0.643444 | 1_2:-24705174 | None:intergenic |
| AACGCCGATGAAAACGGCAA+CGG | 0.643805 | 1_2:-24705189 | None:intergenic |
| CTGAGAAACAACGACTCCAG+TGG | 0.651857 | 1_2:+24705036 | Msa0063940:five_prime_UTR |
| CTTGGTGAGAAACACAAGGC+TGG | 0.654456 | 1_2:+24706607 | Msa0063940:CDS |
| AGTCGTGTTCAACTGGATGG+AGG | 0.665586 | 1_2:-24705013 | None:intergenic |
| GCTTTCTAAAGAGAAAGCAT+GGG | 0.666613 | 1_2:+24707254 | Msa0063940:CDS |
| GAGAATGGTCTGAGTTGATG+CGG | 0.680850 | 1_2:-24705264 | None:intergenic |
| AATGGTCTGAGTTGATGCGG+TGG | 0.700511 | 1_2:-24705261 | None:intergenic |
| TCAGACCATTCTCAGTCACA+AGG | 0.710546 | 1_2:+24705274 | Msa0063940:CDS |
| ACACAATATCGACATCCGAG+AGG | 0.744525 | 1_2:-24707005 | None:intergenic |
| CCTACTAATCAGAACCATCG+GGG | 0.749180 | 1_2:-24707533 | None:intergenic |
| TGTGCTTGGTGAGAAACACA+AGG | 0.756567 | 1_2:+24706603 | Msa0063940:CDS |
| GTGGAAATGAAGAAACCGTG+TGG | 0.802724 | 1_2:-24705242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTGTTTATCAAAATA+TGG | + | chr1_2:24705670-24705689 | Msa0063940:intron | 15.0% |
| !!! | AATAATGTGGATTATATTAA+TGG | + | chr1_2:24706077-24706096 | Msa0063940:intron | 15.0% |
| !!! | TAATGGATTTTATATACTTT+AGG | + | chr1_2:24706094-24706113 | Msa0063940:intron | 15.0% |
| !!! | AATGGATTTTATATACTTTA+GGG | + | chr1_2:24706095-24706114 | Msa0063940:intron | 15.0% |
| !!! | ACAAATTTTCACATACATTA+GGG | - | chr1_2:24706036-24706055 | None:intergenic | 20.0% |
| !! | TCCCTATAAATATAATCAAA+GGG | - | chr1_2:24707042-24707061 | None:intergenic | 20.0% |
| !! | ATCCCTATAAATATAATCAA+AGG | - | chr1_2:24707043-24707062 | None:intergenic | 20.0% |
| !! | TATCAAAATCGAAATCAATA+TGG | + | chr1_2:24707557-24707576 | Msa0063940:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTTGAGACGATTT+GGG | + | chr1_2:24705355-24705374 | Msa0063940:intron | 25.0% |
| ! | GGTCTAATATTTACAAAACT+TGG | + | chr1_2:24705691-24705710 | Msa0063940:intron | 25.0% |
| ! | AAGTTAGCCATTCAATTTAT+GGG | + | chr1_2:24705777-24705796 | Msa0063940:intron | 25.0% |
| ! | TACTTTACCCATAAATTGAA+TGG | - | chr1_2:24705787-24705806 | None:intergenic | 25.0% |
| ! | TAGCAAATCATATAATGCAT+CGG | + | chr1_2:24705938-24705957 | Msa0063940:intron | 25.0% |
| ! | ATACTTCAGAACTAAATTGA+TGG | - | chr1_2:24705970-24705989 | None:intergenic | 25.0% |
| !! | GACAAATTTTCACATACATT+AGG | - | chr1_2:24706037-24706056 | None:intergenic | 25.0% |
| ! | ATGTTATTAAGATGTGGTAA+GGG | - | chr1_2:24706155-24706174 | None:intergenic | 25.0% |
| ! | TAATCCATGTTATTAAGATG+TGG | - | chr1_2:24706161-24706180 | None:intergenic | 25.0% |
| !! | CATCTTAATAACATGGATTA+AGG | + | chr1_2:24706161-24706180 | Msa0063940:intron | 25.0% |
| !!! | GGAAATTGCTATTTATAAAG+AGG | + | chr1_2:24706717-24706736 | Msa0063940:CDS | 25.0% |
| ! | AGTTGGCATATCTAATTATT+TGG | + | chr1_2:24706807-24706826 | Msa0063940:CDS | 25.0% |
| ! | ACCCCTTTGATTATATTTAT+AGG | + | chr1_2:24707037-24707056 | Msa0063940:CDS | 25.0% |
| ! | CCCTATAAATATAATCAAAG+GGG | - | chr1_2:24707041-24707060 | None:intergenic | 25.0% |
| ! | CCCCTTTGATTATATTTATA+GGG | + | chr1_2:24707038-24707057 | Msa0063940:CDS | 25.0% |
| !!! | TTTTATTTATCTCTCAGGAT+CGG | + | chr1_2:24707642-24707661 | Msa0063940:three_prime_UTR | 25.0% |
| ! | CTTAGCTAATTAATCTTACT+TGG | + | chr1_2:24707813-24707832 | Msa0063940:three_prime_UTR | 25.0% |
| ! | AATTAATCTTACTTGGATCT+TGG | + | chr1_2:24707820-24707839 | Msa0063940:three_prime_UTR | 25.0% |
| !! | TGTTGTTTGAGTTGACTTTA+AGG | + | chr1_2:24705071-24705090 | Msa0063940:five_prime_UTR | 30.0% |
| GCTGTTTATCAAATTTCGAT+CGG | - | chr1_2:24705101-24705120 | None:intergenic | 30.0% | |
| CGAAATTTGATAAACAGCAA+TGG | + | chr1_2:24705103-24705122 | Msa0063940:exon | 30.0% | |
| !!! | GTAAGTTTTTTGAGACGATT+TGG | + | chr1_2:24705354-24705373 | Msa0063940:intron | 30.0% |
| !!! | TTTTAGCTCCTTTCTACTTA+AGG | + | chr1_2:24705450-24705469 | Msa0063940:CDS | 30.0% |
| ! | TTTAGCTCCTTTCTACTTAA+GGG | + | chr1_2:24705451-24705470 | Msa0063940:CDS | 30.0% |
| AAACATACCCTTAAGTAGAA+AGG | - | chr1_2:24705461-24705480 | None:intergenic | 30.0% | |
| GTAACTGCTATAACATCATT+AGG | + | chr1_2:24705713-24705732 | Msa0063940:intron | 30.0% | |
| GAAGTTAGCCATTCAATTTA+TGG | + | chr1_2:24705776-24705795 | Msa0063940:intron | 30.0% | |
| !! | TAGTTCTGAACTAATCACAA+TGG | + | chr1_2:24705900-24705919 | Msa0063940:intron | 30.0% |
| TCCACATTATTAAGATGTCA+GGG | - | chr1_2:24706068-24706087 | None:intergenic | 30.0% | |
| ATCCACATTATTAAGATGTC+AGG | - | chr1_2:24706069-24706088 | None:intergenic | 30.0% | |
| TAGGGACTACTTATATACTT+AGG | + | chr1_2:24706113-24706132 | Msa0063940:intron | 30.0% | |
| CATGTTATTAAGATGTGGTA+AGG | - | chr1_2:24706156-24706175 | None:intergenic | 30.0% | |
| CTTACCACATCTTAATAACA+TGG | + | chr1_2:24706154-24706173 | Msa0063940:intron | 30.0% | |
| TGGATTAAGGAACTCAATAT+AGG | + | chr1_2:24706174-24706193 | Msa0063940:intron | 30.0% | |
| CATGTTAAGGATATCAAAAG+TGG | - | chr1_2:24706270-24706289 | None:intergenic | 30.0% | |
| TTCACCAATATCAAGAAAGT+TGG | + | chr1_2:24706790-24706809 | Msa0063940:CDS | 30.0% | |
| TATGCCAACTTTCTTGATAT+TGG | - | chr1_2:24706797-24706816 | None:intergenic | 30.0% | |
| TATTTATAGGGATTCAGATG+TGG | + | chr1_2:24707050-24707069 | Msa0063940:CDS | 30.0% | |
| TGTCTTTGATGAACCTAAAA+TGG | + | chr1_2:24707122-24707141 | Msa0063940:CDS | 30.0% | |
| GTCTTTGATGAACCTAAAAT+GGG | + | chr1_2:24707123-24707142 | Msa0063940:CDS | 30.0% | |
| GTTATATACCCATATTCTCA+TGG | - | chr1_2:24707169-24707188 | None:intergenic | 30.0% | |
| AGAATATGGGTATATAACTC+TGG | + | chr1_2:24707171-24707190 | Msa0063940:CDS | 30.0% | |
| ! | GTACCTTTTTATGAACAGTA+AGG | + | chr1_2:24707362-24707381 | Msa0063940:CDS | 30.0% |
| GAACCTTACTGTTCATAAAA+AGG | - | chr1_2:24707368-24707387 | None:intergenic | 30.0% | |
| TAGTTAACATGTACAATCAC+AGG | - | chr1_2:24707435-24707454 | None:intergenic | 30.0% | |
| !! | GTCTCTTTTATTTATCTCTC+AGG | + | chr1_2:24707637-24707656 | Msa0063940:three_prime_UTR | 30.0% |
| ! | CTCACTGTTCTTTCTATTTT+CGG | + | chr1_2:24707671-24707690 | Msa0063940:three_prime_UTR | 30.0% |
| ATTTGATAAACAGCAATGGC+AGG | + | chr1_2:24705107-24705126 | Msa0063940:exon | 35.0% | |
| ! | GATTGAATGGTTTTTGTCTC+TGG | - | chr1_2:24705153-24705172 | None:intergenic | 35.0% |
| !! | AAAGTGTCTGTTTTCAGCTT+AGG | + | chr1_2:24705402-24705421 | Msa0063940:intron | 35.0% |
| ! | TGTGATTAGTTCAGAACTAG+TGG | - | chr1_2:24705899-24705918 | None:intergenic | 35.0% |
| TCCCTGACATCTTAATAATG+TGG | + | chr1_2:24706064-24706083 | Msa0063940:intron | 35.0% | |
| ! | TGTTATGTTGTGTCGTTAGA+TGG | + | chr1_2:24706420-24706439 | Msa0063940:intron | 35.0% |
| !! | TTCAACGCATTAACTTGTTC+TGG | - | chr1_2:24706466-24706485 | None:intergenic | 35.0% |
| TTCTGTTATTCCCGATGAAT+CGG | + | chr1_2:24706666-24706685 | Msa0063940:CDS | 35.0% | |
| TAATGTGTTGGAGATGTTAC+AGG | + | chr1_2:24706762-24706781 | Msa0063940:CDS | 35.0% | |
| ATTGAATCAACACCTTGATC+CGG | - | chr1_2:24706901-24706920 | None:intergenic | 35.0% | |
| !! | TGTTGATTCAATTGCCAAGT+CGG | + | chr1_2:24706909-24706928 | Msa0063940:CDS | 35.0% |
| CATAGCAATCATACAGCTTA+TGG | + | chr1_2:24707090-24707109 | Msa0063940:CDS | 35.0% | |
| TTGATGAACCTAAAATGGGT+TGG | + | chr1_2:24707127-24707146 | Msa0063940:CDS | 35.0% | |
| ! | TGATGAACCTAAAATGGGTT+GGG | + | chr1_2:24707128-24707147 | Msa0063940:CDS | 35.0% |
| ATGCTCATACCATGAGAATA+TGG | + | chr1_2:24707157-24707176 | Msa0063940:CDS | 35.0% | |
| TGCTCATACCATGAGAATAT+GGG | + | chr1_2:24707158-24707177 | Msa0063940:CDS | 35.0% | |
| AGCTCAATTGAAGGAATTGT+TGG | - | chr1_2:24707213-24707232 | None:intergenic | 35.0% | |
| CGATCTAAAAGCTCAATTGA+AGG | - | chr1_2:24707222-24707241 | None:intergenic | 35.0% | |
| ! | TTTCTCTTTAGAAAGCCGAT+CGG | - | chr1_2:24707250-24707269 | None:intergenic | 35.0% |
| ! | GCTTTCTAAAGAGAAAGCAT+GGG | + | chr1_2:24707254-24707273 | Msa0063940:CDS | 35.0% |
| ATCATCCTGATAAACTTGCA+AGG | + | chr1_2:24707454-24707473 | Msa0063940:CDS | 35.0% | |
| TTCATCCTTGCAAGTTTATC+AGG | - | chr1_2:24707462-24707481 | None:intergenic | 35.0% | |
| GTAGTTGAGTTCTATGTCAA+CGG | + | chr1_2:24707486-24707505 | Msa0063940:CDS | 35.0% | |
| TAGTTGAGTTCTATGTCAAC+GGG | + | chr1_2:24707487-24707506 | Msa0063940:CDS | 35.0% | |
| ATCCTACTAATCAGAACCAT+CGG | - | chr1_2:24707538-24707557 | None:intergenic | 35.0% | |
| TTCCACTCTACTACAACAAT+TGG | - | chr1_2:24707617-24707636 | None:intergenic | 35.0% | |
| AACAACAACAACACAACCAC+TGG | - | chr1_2:24705055-24705074 | None:intergenic | 40.0% | |
| AAGAAGAACGCCGATGAAAA+CGG | - | chr1_2:24705198-24705217 | None:intergenic | 40.0% | |
| ! | TTCGCTTTCTTTTCACCACA+CGG | + | chr1_2:24705227-24705246 | Msa0063940:CDS | 40.0% |
| ! | TGTCTGTTTTCAGCTTAGGA+AGG | + | chr1_2:24705406-24705425 | Msa0063940:intron | 40.0% |
| TATCCTTAACATGTGCCCTT+AGG | + | chr1_2:24706277-24706296 | Msa0063940:intron | 40.0% | |
| ATCCTTAACATGTGCCCTTA+GGG | + | chr1_2:24706278-24706297 | Msa0063940:intron | 40.0% | |
| GATTCATCGGGAATAACAGA+AGG | - | chr1_2:24706667-24706686 | None:intergenic | 40.0% | |
| ! | CCAAGAGTTTTGCCAATCTA+GGG | - | chr1_2:24706696-24706715 | None:intergenic | 40.0% |
| TAGATTGGCAAAACTCTTGG+CGG | + | chr1_2:24706696-24706715 | Msa0063940:CDS | 40.0% | |
| ! | TAAAGAGGTCGTTGTTGTTC+TGG | + | chr1_2:24706732-24706751 | Msa0063940:CDS | 40.0% |
| TCTGGCTAACACTAATGTGT+TGG | + | chr1_2:24706750-24706769 | Msa0063940:CDS | 40.0% | |
| TGTTGGAGATGTTACAGGTA+TGG | + | chr1_2:24706767-24706786 | Msa0063940:CDS | 40.0% | |
| TTGAATCAACACCTTGATCC+GGG | - | chr1_2:24706900-24706919 | None:intergenic | 40.0% | |
| ! | GTTGATTCAATTGCCAAGTC+GGG | + | chr1_2:24706910-24706929 | Msa0063940:CDS | 40.0% |
| TTGAGAGAGTTTCTGCAACT+AGG | + | chr1_2:24706970-24706989 | Msa0063940:CDS | 40.0% | |
| ! | TATCTAGCCCAACCCATTTT+AGG | - | chr1_2:24707138-24707157 | None:intergenic | 40.0% |
| ! | GGCTTTCTAAAGAGAAAGCA+TGG | + | chr1_2:24707253-24707272 | Msa0063940:CDS | 40.0% |
| CATCATAACCAGGATGTGAA+GGG | - | chr1_2:24707311-24707330 | None:intergenic | 40.0% | |
| TCATGCTGCAAAGAGAACAA+TGG | + | chr1_2:24707335-24707354 | Msa0063940:CDS | 40.0% | |
| TCCTACTAATCAGAACCATC+GGG | - | chr1_2:24707537-24707556 | None:intergenic | 40.0% | |
| CACTCTACTACAACAATTGG+AGG | - | chr1_2:24707614-24707633 | None:intergenic | 40.0% | |
| CTCCAATTGTTGTAGTAGAG+TGG | + | chr1_2:24707612-24707631 | Msa0063940:three_prime_UTR | 40.0% | |
| TTCTCAGAGTCGTGTTCAAC+TGG | - | chr1_2:24705023-24705042 | None:intergenic | 45.0% | |
| ACCATTCAATCACCGCATCT+CGG | + | chr1_2:24705162-24705181 | Msa0063940:CDS | 45.0% | |
| ! | GTTTTCATCGGCGTTCTTCT+TGG | + | chr1_2:24705197-24705216 | Msa0063940:CDS | 45.0% |
| GTGGAAATGAAGAAACCGTG+TGG | - | chr1_2:24705245-24705264 | None:intergenic | 45.0% | |
| !! | GAGAATGGTCTGAGTTGATG+CGG | - | chr1_2:24705267-24705286 | None:intergenic | 45.0% |
| TCAGACCATTCTCAGTCACA+AGG | + | chr1_2:24705274-24705293 | Msa0063940:CDS | 45.0% | |
| ACCATTCTCAGTCACAAGGT+TGG | + | chr1_2:24705278-24705297 | Msa0063940:intron | 45.0% | |
| ACCAACCTTGTGACTGAGAA+TGG | - | chr1_2:24705282-24705301 | None:intergenic | 45.0% | |
| ! | TTCTCAGTCACAAGGTTGGT+TGG | + | chr1_2:24705282-24705301 | Msa0063940:intron | 45.0% |
| ! | CTGACATGTGTTTTGTGCGA+CGG | + | chr1_2:24705509-24705528 | Msa0063940:intron | 45.0% |
| ! | TGTGCTAACTTGTGCCCTAA+GGG | - | chr1_2:24706295-24706314 | None:intergenic | 45.0% |
| ! | TTGTGCTAACTTGTGCCCTA+AGG | - | chr1_2:24706296-24706315 | None:intergenic | 45.0% |
| GAATTCTGAGCTGAAGAAGC+AGG | + | chr1_2:24706513-24706532 | Msa0063940:CDS | 45.0% | |
| GAAGCAGGTGAAAGGTCTAA+TGG | + | chr1_2:24706528-24706547 | Msa0063940:CDS | 45.0% | |
| TCTAATGGAGAAGCTGCGTT+TGG | + | chr1_2:24706543-24706562 | Msa0063940:CDS | 45.0% | |
| !! | ACGGAACAGTTTGTTGTGCT+TGG | + | chr1_2:24706589-24706608 | Msa0063940:CDS | 45.0% |
| ! | TGTGCTTGGTGAGAAACACA+AGG | + | chr1_2:24706603-24706622 | Msa0063940:CDS | 45.0% |
| !! | AAACACAAGGCTGGTCCTTT+TGG | + | chr1_2:24706616-24706635 | Msa0063940:CDS | 45.0% |
| !! | TCTAGGGTTCACCGATTCAT+CGG | - | chr1_2:24706680-24706699 | None:intergenic | 45.0% |
| TGAATCGGTGAACCCTAGAT+TGG | + | chr1_2:24706681-24706700 | Msa0063940:CDS | 45.0% | |
| CCCTAGATTGGCAAAACTCT+TGG | + | chr1_2:24706693-24706712 | Msa0063940:CDS | 45.0% | |
| ! | GCCAAGAGTTTTGCCAATCT+AGG | - | chr1_2:24706697-24706716 | None:intergenic | 45.0% |
| TCCTGTCTATAGAAGAGACC+CGG | + | chr1_2:24706879-24706898 | Msa0063940:CDS | 45.0% | |
| TATAGAAGAGACCCGGATCA+AGG | + | chr1_2:24706886-24706905 | Msa0063940:CDS | 45.0% | |
| ATTCAATTGCCAAGTCGGGT+GGG | + | chr1_2:24706914-24706933 | Msa0063940:CDS | 45.0% | |
| ACACAATATCGACATCCGAG+AGG | - | chr1_2:24707008-24707027 | None:intergenic | 45.0% | |
| GATGTGGAGTCAATGTCAGA+TGG | + | chr1_2:24707066-24707085 | Msa0063940:CDS | 45.0% | |
| ! | TTTTAGATCGCGTTGCCGAT+CGG | + | chr1_2:24707232-24707251 | Msa0063940:CDS | 45.0% |
| ! | CTCTTTTACCCTTCACATCC+TGG | + | chr1_2:24707300-24707319 | Msa0063940:CDS | 45.0% |
| CCATCATAACCAGGATGTGA+AGG | - | chr1_2:24707312-24707331 | None:intergenic | 45.0% | |
| CCTTCACATCCTGGTTATGA+TGG | + | chr1_2:24707309-24707328 | Msa0063940:CDS | 45.0% | |
| GCATGAAGTCCATCATAACC+AGG | - | chr1_2:24707321-24707340 | None:intergenic | 45.0% | |
| CCTACTAATCAGAACCATCG+GGG | - | chr1_2:24707536-24707555 | None:intergenic | 45.0% | |
| !! | TTATAATATTTATATACTTT+AGG | - | chr1_2:24706008-24706027 | None:intergenic | 5.0% |
| AGTCGTGTTCAACTGGATGG+AGG | - | chr1_2:24705016-24705035 | None:intergenic | 50.0% | |
| CAGAGTCGTGTTCAACTGGA+TGG | - | chr1_2:24705019-24705038 | None:intergenic | 50.0% | |
| CTGAGAAACAACGACTCCAG+TGG | + | chr1_2:24705036-24705055 | Msa0063940:five_prime_UTR | 50.0% | |
| TCCGAGATGCGGTGATTGAA+TGG | - | chr1_2:24705166-24705185 | None:intergenic | 50.0% | |
| !!! | ATCGCCGTTGCCGTTTTCAT+CGG | + | chr1_2:24705185-24705204 | Msa0063940:CDS | 50.0% |
| AACGCCGATGAAAACGGCAA+CGG | - | chr1_2:24705192-24705211 | None:intergenic | 50.0% | |
| !! | AATGGTCTGAGTTGATGCGG+TGG | - | chr1_2:24705264-24705283 | None:intergenic | 50.0% |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr1_2:24706283-24706302 | None:intergenic | 50.0% |
| GAGCTGAAGAAGCAGGTGAA+AGG | + | chr1_2:24706520-24706539 | Msa0063940:CDS | 50.0% | |
| AATGGAGAAGCTGCGTTTGG+CGG | + | chr1_2:24706546-24706565 | Msa0063940:CDS | 50.0% | |
| GCAAGGAAAGGGTCATGCTA+CGG | + | chr1_2:24706570-24706589 | Msa0063940:CDS | 50.0% | |
| CTTGGTGAGAAACACAAGGC+TGG | + | chr1_2:24706607-24706626 | Msa0063940:CDS | 50.0% | |
| ! | TGGTCCTTTTGGCACTGTCA+AGG | + | chr1_2:24706627-24706646 | Msa0063940:CDS | 50.0% |
| AGAGCCTTGACAGTGCCAAA+AGG | - | chr1_2:24706634-24706653 | None:intergenic | 50.0% | |
| !! | CTAGGGTTCACCGATTCATC+GGG | - | chr1_2:24706679-24706698 | None:intergenic | 50.0% |
| TCCGGGTCTCTTCTATAGAC+AGG | - | chr1_2:24706883-24706902 | None:intergenic | 50.0% | |
| GATTCAATTGCCAAGTCGGG+TGG | + | chr1_2:24706913-24706932 | Msa0063940:CDS | 50.0% | |
| AGGTTACAGCGTTCTCCTCT+CGG | + | chr1_2:24706990-24707009 | Msa0063940:CDS | 50.0% | |
| !! | CCCCGATGGTTCTGATTAGT+AGG | + | chr1_2:24707533-24707552 | Msa0063940:exon | 50.0% |
| CGTTTGGCGGAGCAAGGAAA+GGG | + | chr1_2:24706559-24706578 | Msa0063940:CDS | 55.0% | |
| AGCATGATTCCCACCCGACT+TGG | - | chr1_2:24706926-24706945 | None:intergenic | 55.0% | |
| GGTGGGAATCATGCTGTCTC+TGG | + | chr1_2:24706931-24706950 | Msa0063940:CDS | 55.0% | |
| AAGCTGCGTTTGGCGGAGCA+AGG | + | chr1_2:24706553-24706572 | Msa0063940:CDS | 60.0% | |
| GCGTTTGGCGGAGCAAGGAA+AGG | + | chr1_2:24706558-24706577 | Msa0063940:CDS | 60.0% | |
| GGCAACGGCGATCCGAGATG+CGG | - | chr1_2:24705177-24705196 | None:intergenic | 65.0% | |
| GCGCTCGACAGTTTCCCCGA+TGG | + | chr1_2:24707519-24707538 | Msa0063940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 24704931 | 24707848 | 24704931 | ID=Msa0063940;Name=Msa0063940 |
| chr1_2 | mRNA | 24704931 | 24707848 | 24704931 | ID=Msa0063940-mRNA-1;Parent=Msa0063940;Name=Msa0063940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=191|0|0.66|0.66|1|1|3|297|446 |
| chr1_2 | exon | 24704931 | 24705295 | 24704931 | ID=Msa0063940-mRNA-1:exon:8846;Parent=Msa0063940-mRNA-1 |
| chr1_2 | exon | 24705419 | 24705472 | 24705419 | ID=Msa0063940-mRNA-1:exon:8847;Parent=Msa0063940-mRNA-1 |
| chr1_2 | exon | 24706439 | 24707848 | 24706439 | ID=Msa0063940-mRNA-1:exon:8848;Parent=Msa0063940-mRNA-1 |
| chr1_2 | five_prime_UTR | 24704931 | 24705121 | 24704931 | ID=Msa0063940-mRNA-1:five_prime_utr;Parent=Msa0063940-mRNA-1 |
| chr1_2 | CDS | 24705122 | 24705295 | 24705122 | ID=Msa0063940-mRNA-1:cds;Parent=Msa0063940-mRNA-1 |
| chr1_2 | CDS | 24705419 | 24705472 | 24705419 | ID=Msa0063940-mRNA-1:cds;Parent=Msa0063940-mRNA-1 |
| chr1_2 | CDS | 24706439 | 24707551 | 24706439 | ID=Msa0063940-mRNA-1:cds;Parent=Msa0063940-mRNA-1 |
| chr1_2 | three_prime_UTR | 24707552 | 24707848 | 24707552 | ID=Msa0063940-mRNA-1:three_prime_utr;Parent=Msa0063940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
