AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0862480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862480 MtrunA17_Chr5g0444081 98.020 202 4 0 1 202 64 265 9.14e-151 418
Msa0862480 MtrunA17_Chr3g0098811 80.198 202 40 0 1 202 1 202 7.78e-126 353
Msa0862480 MtrunA17_Chr3g0116541 68.333 180 54 2 26 202 17 196 4.34e-83 244
Msa0862480 MtrunA17_Chr8g0372071 42.000 150 82 2 36 184 51 196 2.19e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0862480 AT5G61640.1 73.267 202 54 0 1 202 1 202 1.58e-116 330
Msa0862480 AT5G61640.2 73.267 202 54 0 1 202 28 229 2.61e-116 330
Msa0862480 AT5G07470.1 74.752 202 51 0 1 202 1 202 1.78e-114 325
Msa0862480 AT4G25130.1 71.921 203 55 1 2 202 56 258 9.75e-114 325
Msa0862480 AT5G07460.1 71.892 185 52 0 18 202 34 218 3.10e-102 294
Msa0862480 AT2G18030.2 36.313 179 102 4 1 178 25 192 5.88e-27 102
Msa0862480 AT2G18030.1 35.955 178 102 4 1 177 25 191 1.09e-26 102

Find 118 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAGCAGTTTGCTGCTTT+TGG 0.133192 5_4:-62138267 Msa0862480:CDS
GGTAATTTCCTTTAGTAATT+AGG 0.154971 5_4:-62136234 Msa0862480:three_prime_UTR
CAGTATACAACTCTAATTTA+TGG 0.239120 5_4:+62136504 None:intergenic
ATTCTCAAAGGCACATTGTT+TGG 0.290349 5_4:+62138083 None:intergenic
ATTTGTGATTGTTATAGTTT+TGG 0.293399 5_4:-62136211 Msa0862480:three_prime_UTR
GAAAATAGCTAAAGAGTCTT+TGG 0.300627 5_4:-62136766 Msa0862480:CDS
CACATTGTTTGGGATCATAT+TGG 0.309800 5_4:+62138094 None:intergenic
ACTGTATTGGAGCTTGAAAA+TGG 0.313276 5_4:-62136533 Msa0862480:three_prime_UTR
CGAGGGTAGGAACTTGGTTT+TGG 0.319786 5_4:+62138464 None:intergenic
CTCAGCCCTGTAGAACTTCT+TGG 0.322376 5_4:+62136692 None:intergenic
CTTCTGAACAAACTTGGATT+TGG 0.322720 5_4:-62138360 Msa0862480:CDS
AGGGCTTGGTTACAGTAAAA+TGG 0.338171 5_4:+62138391 None:intergenic
TGCACACATATTTATTGATT+AGG 0.338899 5_4:-62136255 Msa0862480:three_prime_UTR
TACCAGTCATAACCAAGATT+TGG 0.345807 5_4:-62140427 Msa0862480:five_prime_UTR
TCGATATATACCTGTCGATT+TGG 0.348025 5_4:+62138021 None:intergenic
AAGTTTGTTCAGAAGGTTCA+TGG 0.357858 5_4:+62138368 None:intergenic
AATTAACCATAGCACCGAAT+TGG 0.359283 5_4:+62136594 None:intergenic
ACTTATGAAGATGTGTGTTC+AGG 0.363577 5_4:-62138147 Msa0862480:CDS
ATGATTATAATTTCTAGATA+AGG 0.364380 5_4:-62138587 Msa0862480:five_prime_UTR
TACAACCTCATTGTGGTTTG+TGG 0.365802 5_4:+62138122 None:intergenic
TTCTCAAAGGCACATTGTTT+GGG 0.365969 5_4:+62138084 None:intergenic
TGATTATAATTTCTAGATAA+GGG 0.366704 5_4:-62138586 Msa0862480:five_prime_UTR
CACAGAATCACCCCGCTTGA+TGG 0.374238 5_4:-62136342 Msa0862480:three_prime_UTR
GGAGCTGGACGTGGTGCTAT+AGG 0.378569 5_4:+62138524 None:intergenic
CTTTCACTCACACTCTCACT+TGG 0.380765 5_4:-62140326 Msa0862480:five_prime_UTR
AGAATCTGCTTGATACGTTC+TGG 0.387186 5_4:-62138065 Msa0862480:CDS
CTTTCTCAAGGTACTGTTGA+TGG 0.393321 5_4:+62136664 None:intergenic
TTTGGGGCTGGCTGCTTCTG+GGG 0.398460 5_4:-62138249 Msa0862480:CDS
CAGAAGGTTCATGGAGGGCT+TGG 0.402252 5_4:+62138377 None:intergenic
GTTGTTAGAGAGAGAGGATG+AGG 0.408806 5_4:+62140383 None:intergenic
GGAACAACAAGAGAAGCAAT+TGG 0.418797 5_4:-62136745 Msa0862480:CDS
CAAACCACAATGAGGTTGTA+AGG 0.423126 5_4:-62138119 Msa0862480:CDS
TTAGTCTTCCAGAGGGTGCC+TGG 0.428460 5_4:-62138219 Msa0862480:CDS
CTTGAGAAAGGTGGTCGATT+CGG 0.429559 5_4:-62136651 Msa0862480:CDS
AATGTCTCAAAAGGATGATA+TGG 0.435787 5_4:-62136314 Msa0862480:three_prime_UTR
TTCCTGCCAAGAAGTTCTAC+AGG 0.437198 5_4:-62136698 Msa0862480:CDS
TACTAACTCCAGGCACCCTC+TGG 0.440966 5_4:+62138211 None:intergenic
ATGAACCTTCTGAACAAACT+TGG 0.442513 5_4:-62138366 Msa0862480:CDS
CTTATGAAGATGTGTGTTCA+GGG 0.443891 5_4:-62138146 Msa0862480:CDS
CAAATCCAAGTTTGTTCAGA+AGG 0.446426 5_4:+62138361 None:intergenic
ACAGAATCACCCCGCTTGAT+GGG 0.448695 5_4:-62136341 Msa0862480:three_prime_UTR
GGGCTTGGTTACAGTAAAAT+GGG 0.455190 5_4:+62138392 None:intergenic
CGTGGTGCTATAGGCGCTGC+TGG 0.457191 5_4:+62138533 None:intergenic
ATTAACCATAGCACCGAATT+GGG 0.458836 5_4:+62136595 None:intergenic
ACCTGTCGATTTGGCGTAGT+AGG 0.463222 5_4:+62138030 None:intergenic
AGAAAGCGAGGGTAGGAACT+TGG 0.468336 5_4:+62138458 None:intergenic
GGATCAATACGACACTGTAT+TGG 0.470188 5_4:-62136546 Msa0862480:three_prime_UTR
AAGATGAGAATTTGTGGAGC+AGG 0.472195 5_4:-62140098 Msa0862480:intron
ATGGGGTTCAATGTCTCAAA+AGG 0.475789 5_4:-62136323 Msa0862480:three_prime_UTR
AAGGATGCAATGACCCAATT+CGG 0.477354 5_4:-62136608 Msa0862480:CDS
TAGGATTGTGCAAAAGCCCC+TGG 0.477867 5_4:+62138169 None:intergenic
GAACAACAAGAGAAGCAATT+GGG 0.490289 5_4:-62136744 Msa0862480:CDS
CTGTATTGGAGCTTGAAAAT+GGG 0.491083 5_4:-62136532 Msa0862480:three_prime_UTR
CATGGATTCAACCATTCCTC+AGG 0.492517 5_4:-62138316 Msa0862480:CDS
GTGGGAACACAGTACAGATC+TGG 0.492891 5_4:-62136816 Msa0862480:CDS
GGTGCTGGTATATCGTCATC+TGG 0.500288 5_4:+62138291 None:intergenic
GACATTGAACCCCATCAAGC+GGG 0.506295 5_4:+62136331 None:intergenic
AACCAAATCTTGGTTATGAC+TGG 0.511786 5_4:+62140425 None:intergenic
TCCTACTACGCCAAATCGAC+AGG 0.516001 5_4:-62138031 Msa0862480:intron
TTCAAGCAATCTGCTGCTAA+AGG 0.517342 5_4:-62136627 Msa0862480:CDS
TTGTTGAAGATGAGAATTTG+TGG 0.519052 5_4:-62140104 Msa0862480:five_prime_UTR
TGCAAGGTCATCGGAGAGCA+TGG 0.519772 5_4:-62138334 Msa0862480:CDS
ACAGTAAAATGGGGACGGGT+TGG 0.522086 5_4:+62138402 None:intergenic
AAAGCAGCAAACTGCTGACC+TGG 0.522845 5_4:+62138270 None:intergenic
TCAATGGTTGTTAGAGAGAG+AGG 0.525008 5_4:+62140377 None:intergenic
TCACAAATCCTAATTACTAA+AGG 0.527470 5_4:+62136226 None:intergenic
AACAAACACTAGCAAGGAGC+TGG 0.528081 5_4:+62138509 None:intergenic
GAACACACATCTTCATAAGT+AGG 0.536289 5_4:+62138150 None:intergenic
AACTTGGATTTGGCAGTGCA+AGG 0.536639 5_4:-62138350 Msa0862480:CDS
TTGTTGTAAAGTATTTGTCT+TGG 0.538402 5_4:-62136460 Msa0862480:three_prime_UTR
AATGACCCAATTCGGTGCTA+TGG 0.544140 5_4:-62136600 Msa0862480:CDS
GGTTACAGTAAAATGGGGAC+GGG 0.546721 5_4:+62138398 None:intergenic
ACCTCTGTCTTACTAACTCC+AGG 0.548827 5_4:+62138201 None:intergenic
AACAAGAGAAGCAATTGGGC+AGG 0.550479 5_4:-62136740 Msa0862480:CDS
GCAAACTGCTGACCTGGTGC+TGG 0.552206 5_4:+62138276 None:intergenic
TTTCACTCACACTCTCACTT+GGG 0.553380 5_4:-62140325 Msa0862480:intron
GTCATCTGGTCCCTGAGGAA+TGG 0.556094 5_4:+62138305 None:intergenic
GCCCTGTAGAACTTCTTGGC+AGG 0.556183 5_4:+62136696 None:intergenic
GGAGTTAGTAAGACAGAGGT+TGG 0.557076 5_4:-62138198 Msa0862480:CDS
CACTAGCAAGGAGCTGGACG+TGG 0.557263 5_4:+62138515 None:intergenic
ATTTGGCAGTGCAAGGTCAT+CGG 0.557290 5_4:-62138343 Msa0862480:CDS
ACAGAGGTTGGTTACACCCA+GGG 0.566736 5_4:-62138186 Msa0862480:CDS
ATAATGTGAATTTATCCTCA+AGG 0.573867 5_4:-62136567 Msa0862480:three_prime_UTR
CGTATCAAGCAGATTCTCAA+AGG 0.580362 5_4:+62138071 None:intergenic
CATCAACAGTACCTTGAGAA+AGG 0.580843 5_4:-62136663 Msa0862480:CDS
GACAGAAAATCTAGAAAGCG+AGG 0.586280 5_4:+62138446 None:intergenic
TGGTTACAGTAAAATGGGGA+CGG 0.587074 5_4:+62138397 None:intergenic
CAAGAAGTTCTACAGGGCTG+AGG 0.588571 5_4:-62136691 Msa0862480:CDS
GTGTTGAATTAGTCTTCCAG+AGG 0.595505 5_4:-62138227 Msa0862480:CDS
TTGTTCAGAAGGTTCATGGA+GGG 0.602277 5_4:+62138372 None:intergenic
AGCGGGGTGATTCTGTGAGA+AGG 0.602332 5_4:+62136348 None:intergenic
CAGAATCACCCCGCTTGATG+GGG 0.603991 5_4:-62136340 Msa0862480:three_prime_UTR
CGAATCGACCACCTTTCTCA+AGG 0.605526 5_4:+62136652 None:intergenic
AGGATTGTGCAAAAGCCCCT+GGG 0.609672 5_4:+62138170 None:intergenic
AGAGGATGAGGATTCGCTCA+CGG 0.612435 5_4:+62140395 None:intergenic
AAACCACAATGAGGTTGTAA+GGG 0.613260 5_4:-62138118 Msa0862480:CDS
AGACATTGAACCCCATCAAG+CGG 0.615138 5_4:+62136330 None:intergenic
AGAAGAAACAAACACTAGCA+AGG 0.615666 5_4:+62138503 None:intergenic
ACAGAAAATCTAGAAAGCGA+GGG 0.620493 5_4:+62138447 None:intergenic
GACAGAGGTTGGTTACACCC+AGG 0.622309 5_4:-62138187 Msa0862480:CDS
AAAATCTAGAAAGCGAGGGT+AGG 0.625967 5_4:+62138451 None:intergenic
GGACCCTTACAACCTCATTG+TGG 0.628278 5_4:+62138115 None:intergenic
TGTTGAATTAGTCTTCCAGA+GGG 0.628480 5_4:-62138226 Msa0862480:CDS
TCCTGCCAAGAAGTTCTACA+GGG 0.646626 5_4:-62136697 Msa0862480:CDS
ATGGATTCAACCATTCCTCA+GGG 0.661571 5_4:-62138315 Msa0862480:CDS
CAGTGTCGTATTGATCCTTG+AGG 0.663620 5_4:+62136552 None:intergenic
CAACAGTACCTTGAGAAAGG+TGG 0.667397 5_4:-62136660 Msa0862480:CDS
CGGGTTGGTGAAAACAAGCA+AGG 0.672554 5_4:+62138417 None:intergenic
CAGAGGTTGGTTACACCCAG+GGG 0.676119 5_4:-62138185 Msa0862480:CDS
GATGACGATATACCAGCACC+AGG 0.678617 5_4:-62138288 Msa0862480:CDS
GCCTGGAGTTAGTAAGACAG+AGG 0.689093 5_4:-62138202 Msa0862480:CDS
TATGTGACAGGGGAATGATG+TGG 0.690238 5_4:-62136835 Msa0862480:intron
ATGTGACAGGGGAATGATGT+GGG 0.696486 5_4:-62136834 Msa0862480:intron
ATATCGTCATCTGGTCCCTG+AGG 0.697908 5_4:+62138300 None:intergenic
TTTGTTCAGAAGGTTCATGG+AGG 0.703199 5_4:+62138371 None:intergenic
GGCTTGGTTACAGTAAAATG+GGG 0.703897 5_4:+62138393 None:intergenic
ACATTGAACCCCATCAAGCG+GGG 0.709266 5_4:+62136332 None:intergenic
AGGGACCACAAACCACAATG+AGG 0.713909 5_4:-62138127 Msa0862480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAAAAAAAATGTTTTTG+TGG - chr5_4:62136432-62136451 Msa0862480:three_prime_UTR 10.0%
!!! ATAAAAAAAAATGTTTTTGT+GGG - chr5_4:62136433-62136452 Msa0862480:three_prime_UTR 10.0%
!!! TATTATTTATGAATTTTTTC+TGG - chr5_4:62136497-62136516 Msa0862480:three_prime_UTR 10.0%
!!! ATAGATTTTTTGAAAGAAAA+GGG + chr5_4:62136413-62136432 None:intergenic 15.0%
!!! TATAGATTTTTTGAAAGAAA+AGG + chr5_4:62136414-62136433 None:intergenic 15.0%
!! TGAATTGTAGAAATATAAAA+GGG + chr5_4:62136611-62136630 None:intergenic 15.0%
!! AAATATAGTGAAAATTGAAA+AGG + chr5_4:62136671-62136690 None:intergenic 15.0%
!!! TATATTGATAATAATAACAG+AGG - chr5_4:62137430-62137449 Msa0862480:intron 15.0%
!! AAATTAGTGTTTAATGATAA+TGG - chr5_4:62137566-62137585 Msa0862480:intron 15.0%
!! AATACTGTTAAAAAACATAA+GGG + chr5_4:62138006-62138025 None:intergenic 15.0%
!! AAATACTGTTAAAAAACATA+AGG + chr5_4:62138007-62138026 None:intergenic 15.0%
!!! TTTTAACAGTATTTTGAAAA+TGG - chr5_4:62138013-62138032 Msa0862480:intron 15.0%
!!! ATGATTATAATTTCTAGATA+AGG - chr5_4:62138065-62138084 Msa0862480:CDS 15.0%
!!! TGATTATAATTTCTAGATAA+GGG - chr5_4:62138066-62138085 Msa0862480:CDS 15.0%
!!! ACATTTTGTCTTTTATTTTT+TGG + chr5_4:62140229-62140248 None:intergenic 15.0%
!! AATAAGAAACAAAGTGTAAT+TGG + chr5_4:62136374-62136393 None:intergenic 20.0%
!! TGATTCATGTAATTTATTGA+AGG - chr5_4:62136524-62136543 Msa0862480:three_prime_UTR 20.0%
!! GATTCATGTAATTTATTGAA+GGG - chr5_4:62136525-62136544 Msa0862480:three_prime_UTR 20.0%
!! CTGAATTGTAGAAATATAAA+AGG + chr5_4:62136612-62136631 None:intergenic 20.0%
!! CACTAAAAAAACTAAAAACA+AGG + chr5_4:62136645-62136664 None:intergenic 20.0%
!! TTTAAGCTAGACAATATAAA+TGG + chr5_4:62136802-62136821 None:intergenic 20.0%
!!! AAGATTTAGGACTAATTTAA+GGG + chr5_4:62136838-62136857 None:intergenic 20.0%
!!! TAAGATTTAGGACTAATTTA+AGG + chr5_4:62136839-62136858 None:intergenic 20.0%
!! TGTGAATTTAATGACAAATA+AGG + chr5_4:62136960-62136979 None:intergenic 20.0%
!! GAATGCATTTATACATAAAA+GGG + chr5_4:62137249-62137268 None:intergenic 20.0%
!! AGAATGCATTTATACATAAA+AGG + chr5_4:62137250-62137269 None:intergenic 20.0%
!!! ACAATTGATAGTATTGATAA+AGG - chr5_4:62137293-62137312 Msa0862480:intron 20.0%
!!! CAATTGATAGTATTGATAAA+GGG - chr5_4:62137294-62137313 Msa0862480:intron 20.0%
!! ATGCATTAGAAATTTATAGA+TGG - chr5_4:62137338-62137357 Msa0862480:intron 20.0%
!!! TATAGATGGTCTTATATTTA+AGG - chr5_4:62137352-62137371 Msa0862480:intron 20.0%
!!! TTGTAAATGGTCTTATAATT+AGG - chr5_4:62137387-62137406 Msa0862480:intron 20.0%
!!! TGTAAATGGTCTTATAATTA+GGG - chr5_4:62137388-62137407 Msa0862480:intron 20.0%
!!! AACTCTTTTACTTTGATAAT+AGG - chr5_4:62137898-62137917 Msa0862480:intron 20.0%
!! TCAAAAATGAACATTTAAGA+TGG + chr5_4:62137925-62137944 None:intergenic 20.0%
!!! TATTTTTCATTCAGTTTTCT+TGG - chr5_4:62137964-62137983 Msa0862480:intron 20.0%
!! AATTTACTAAAAGAACATGT+TGG + chr5_4:62138997-62139016 None:intergenic 20.0%
!!! ACATGTTCTTTTAGTAAATT+TGG - chr5_4:62138997-62139016 Msa0862480:intron 20.0%
!!! CATGTTCTTTTAGTAAATTT+GGG - chr5_4:62138998-62139017 Msa0862480:intron 20.0%
!!! AGTATAAAACCATTTTGATA+TGG - chr5_4:62139109-62139128 Msa0862480:intron 20.0%
!! ATAGCTCACTATATTTATTT+AGG + chr5_4:62139291-62139310 None:intergenic 20.0%
!!! ATTTGTGATTGTTATAGTTT+TGG - chr5_4:62140441-62140460 Msa0862480:five_prime_UTR 20.0%
! AACAAAGTGTAATTGGAAAA+GGG + chr5_4:62136367-62136386 None:intergenic 25.0%
! AAACAAAGTGTAATTGGAAA+AGG + chr5_4:62136368-62136387 None:intergenic 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + chr5_4:62137104-62137123 None:intergenic 25.0%
! AGCTAAAACATCAAAAGAAA+AGG + chr5_4:62136873-62136892 None:intergenic 25.0%
! ACAACTGCTTTAATAGTTTA+TGG - chr5_4:62136998-62137017 Msa0862480:intron 25.0%
!! CACTAAAACATCAAAAGTTT+TGG - chr5_4:62137063-62137082 Msa0862480:intron 25.0%
!!! CTCTAAAACATCAAAAGAAA+AGG - chr5_4:62137099-62137118 Msa0862480:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr5_4:62137104-62137123 Msa0862480:intron 25.0%
! GTAAACTACTCTCATATTAA+GGG + chr5_4:62137156-62137175 None:intergenic 25.0%
! TGTAAACTACTCTCATATTA+AGG + chr5_4:62137157-62137176 None:intergenic 25.0%
! GAGTAGTTTACAAAAATTAC+AGG - chr5_4:62137165-62137184 Msa0862480:intron 25.0%
!!! GACAAACACTTTTTTGTAAA+TGG - chr5_4:62137374-62137393 Msa0862480:intron 25.0%
! CTATACATGTATAGAAGAAA+TGG - chr5_4:62137494-62137513 Msa0862480:intron 25.0%
! ATTTCCAATATGAGAATCAA+AGG - chr5_4:62137630-62137649 Msa0862480:intron 25.0%
! ATTTCCTTTGATTCTCATAT+TGG + chr5_4:62137637-62137656 None:intergenic 25.0%
! TATGAGAATCAAAGGAAATA+AGG - chr5_4:62137638-62137657 Msa0862480:intron 25.0%
!! ATTTTCATACCTAAACATCT+AGG - chr5_4:62137726-62137745 Msa0862480:intron 25.0%
! TACAGTATCAACAAACAAAA+GGG + chr5_4:62137877-62137896 None:intergenic 25.0%
! TTACAGTATCAACAAACAAA+AGG + chr5_4:62137878-62137897 None:intergenic 25.0%
! ATCAAAATGATTAACATTGG+AGG + chr5_4:62138855-62138874 None:intergenic 25.0%
! GCTATCAAAATGATTAACAT+TGG + chr5_4:62138858-62138877 None:intergenic 25.0%
! TAGATTACTCCATATCAAAA+TGG + chr5_4:62139121-62139140 None:intergenic 25.0%
! TTGAACAGAAAAGAAACAAA+GGG + chr5_4:62139606-62139625 None:intergenic 25.0%
! ATAATGTGAATTTATCCTCA+AGG - chr5_4:62140085-62140104 Msa0862480:intron 25.0%
! CAGTATACAACTCTAATTTA+TGG + chr5_4:62140151-62140170 None:intergenic 25.0%
!! TTGTTGTAAAGTATTTGTCT+TGG - chr5_4:62140192-62140211 Msa0862480:intron 25.0%
!! TGCACACATATTTATTGATT+AGG - chr5_4:62140397-62140416 Msa0862480:five_prime_UTR 25.0%
! GGTAATTTCCTTTAGTAATT+AGG - chr5_4:62140418-62140437 Msa0862480:five_prime_UTR 25.0%
! TCACAAATCCTAATTACTAA+AGG + chr5_4:62140429-62140448 None:intergenic 25.0%
ACAAAGTGTAATTGGAAAAG+GGG + chr5_4:62136366-62136385 None:intergenic 30.0%
GAAAAGGGTGAAATTAAGTT+TGG + chr5_4:62136398-62136417 None:intergenic 30.0%
TTGTTGAAGATGAGAATTTG+TGG - chr5_4:62136548-62136567 Msa0862480:three_prime_UTR 30.0%
GACCATGAATATCATGAATT+AGG - chr5_4:62136701-62136720 Msa0862480:CDS 30.0%
TATTGTATCAATATGACAGC+AGG + chr5_4:62136727-62136746 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + chr5_4:62137108-62137127 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr5_4:62136875-62136894 Msa0862480:intron 30.0%
ATTCACATGTGATAAACCAA+AGG - chr5_4:62136973-62136992 Msa0862480:intron 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - chr5_4:62137014-62137033 Msa0862480:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr5_4:62137108-62137127 Msa0862480:intron 30.0%
! TCTCATATTAAGGGAGTATA+TGG + chr5_4:62137147-62137166 None:intergenic 30.0%
! GTATTGATAAAGGGTATAGT+TGG - chr5_4:62137303-62137322 Msa0862480:intron 30.0%
!! AATGGTCTTATAATTAGGGA+AGG - chr5_4:62137392-62137411 Msa0862480:intron 30.0%
ACTAAGTAAGTACATGATAC+TGG + chr5_4:62137800-62137819 None:intergenic 30.0%
!! AATGGCTCTTATGTTTTTGA+AGG - chr5_4:62138031-62138050 Msa0862480:intron 30.0%
!! ATGGCTCTTATGTTTTTGAA+GGG - chr5_4:62138032-62138051 Msa0862480:CDS 30.0%
GAATAATAAGTCTAGACTTG+TGG - chr5_4:62138760-62138779 Msa0862480:intron 30.0%
!! ACAAGACAATCATTTTTCCT+GGG + chr5_4:62139036-62139055 None:intergenic 30.0%
GTATTATTACTACTACGAAC+CGG + chr5_4:62139269-62139288 None:intergenic 30.0%
GAAACTTGGTAGAAGAAATT+AGG + chr5_4:62139335-62139354 None:intergenic 30.0%
CACATAATTCGTGTAATCAA+GGG + chr5_4:62139557-62139576 None:intergenic 30.0%
TCACATAATTCGTGTAATCA+AGG + chr5_4:62139558-62139577 None:intergenic 30.0%
CTTGAACAGAAAAGAAACAA+AGG + chr5_4:62139607-62139626 None:intergenic 30.0%
GAAAATAGCTAAAGAGTCTT+TGG - chr5_4:62139886-62139905 Msa0862480:intron 30.0%
! ATGTCTTTTCAGAAATTAGC+AGG - chr5_4:62140245-62140264 Msa0862480:intron 30.0%
AATGTCTCAAAAGGATGATA+TGG - chr5_4:62140338-62140357 Msa0862480:five_prime_UTR 30.0%
!!! TCTTCATCTACTTTTTTTGC+TGG - chr5_4:62140365-62140384 Msa0862480:intron 30.0%
TACCAGTCATAACCAAGATT+TGG - chr5_4:62136225-62136244 Msa0862480:three_prime_UTR 35.0%
AACCAAATCTTGGTTATGAC+TGG + chr5_4:62136230-62136249 None:intergenic 35.0%
AGAAATGGGAAAAGCTTCAA+TGG + chr5_4:62136294-62136313 None:intergenic 35.0%
AGAACAAGAGAGAGAGAAAT+GGG + chr5_4:62136308-62136327 None:intergenic 35.0%
AAGAACAAGAGAGAGAGAAA+TGG + chr5_4:62136309-62136328 None:intergenic 35.0%
GGCCTAATTCATGATATTCA+TGG + chr5_4:62136706-62136725 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG + chr5_4:62137107-62137126 None:intergenic 35.0%
ATTAAAGCAGTTGTGACCTT+TGG + chr5_4:62136992-62137011 None:intergenic 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - chr5_4:62137013-62137032 Msa0862480:intron 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + chr5_4:62137030-62137049 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr5_4:62137107-62137126 Msa0862480:intron 35.0%
GTCTTATAATTAGGGAAGGA+GGG - chr5_4:62137396-62137415 Msa0862480:intron 35.0%
!!! ATGAGCCTCTGTTTTTTGAA+CGG + chr5_4:62137458-62137477 None:intergenic 35.0%
GCAACTCATAGTTCATGTTT+AGG - chr5_4:62137600-62137619 Msa0862480:intron 35.0%
ACTCATAGTTCATGTTTAGG+AGG - chr5_4:62137603-62137622 Msa0862480:intron 35.0%
CTCATAGTTCATGTTTAGGA+GGG - chr5_4:62137604-62137623 Msa0862480:intron 35.0%
AGGAATGAACATGCATGATT+AGG - chr5_4:62137658-62137677 Msa0862480:intron 35.0%
GGAATGAACATGCATGATTA+GGG - chr5_4:62137659-62137678 Msa0862480:intron 35.0%
GAATGAACATGCATGATTAG+GGG - chr5_4:62137660-62137679 Msa0862480:intron 35.0%
CAATTCTTGCCTAGATGTTT+AGG + chr5_4:62137738-62137757 None:intergenic 35.0%
AGAAGAAACAAACACTAGCA+AGG + chr5_4:62138152-62138171 None:intergenic 35.0%
ACAGAAAATCTAGAAAGCGA+GGG + chr5_4:62138208-62138227 None:intergenic 35.0%
! AAGTTTGTTCAGAAGGTTCA+TGG + chr5_4:62138287-62138306 None:intergenic 35.0%
ATGAACCTTCTGAACAAACT+TGG - chr5_4:62138286-62138305 Msa0862480:CDS 35.0%
! CAAATCCAAGTTTGTTCAGA+AGG + chr5_4:62138294-62138313 None:intergenic 35.0%
CTTCTGAACAAACTTGGATT+TGG - chr5_4:62138292-62138311 Msa0862480:CDS 35.0%
!! TGTTGAATTAGTCTTCCAGA+GGG - chr5_4:62138426-62138445 Msa0862480:five_prime_UTR 35.0%
GAACACACATCTTCATAAGT+AGG + chr5_4:62138505-62138524 None:intergenic 35.0%
ACTTATGAAGATGTGTGTTC+AGG - chr5_4:62138505-62138524 Msa0862480:five_prime_UTR 35.0%
CTTATGAAGATGTGTGTTCA+GGG - chr5_4:62138506-62138525 Msa0862480:five_prime_UTR 35.0%
AAACCACAATGAGGTTGTAA+GGG - chr5_4:62138534-62138553 Msa0862480:five_prime_UTR 35.0%
! CACATTGTTTGGGATCATAT+TGG + chr5_4:62138561-62138580 None:intergenic 35.0%
! TTCTCAAAGGCACATTGTTT+GGG + chr5_4:62138571-62138590 None:intergenic 35.0%
! ATTCTCAAAGGCACATTGTT+TGG + chr5_4:62138572-62138591 None:intergenic 35.0%
! TCGATATATACCTGTCGATT+TGG + chr5_4:62138634-62138653 None:intergenic 35.0%
!!! GAGTTCTTTTTTGTCTCAAG+TGG - chr5_4:62138715-62138734 Msa0862480:intron 35.0%
TTATTCAGATCAGCAAAGTC+AGG + chr5_4:62138746-62138765 None:intergenic 35.0%
! TTGTGGATTGTCAACATTGA+TGG - chr5_4:62138777-62138796 Msa0862480:intron 35.0%
!! GACAAGACAATCATTTTTCC+TGG + chr5_4:62139037-62139056 None:intergenic 35.0%
TATGTGACTATGGTTAGGTA+AGG + chr5_4:62139148-62139167 None:intergenic 35.0%
CGAATTATGTGACTATGGTT+AGG + chr5_4:62139153-62139172 None:intergenic 35.0%
AACCATAGTCACATAATTCG+CGG - chr5_4:62139153-62139172 Msa0862480:intron 35.0%
AGAAGAATTCGGTACGTATA+GGG - chr5_4:62139223-62139242 Msa0862480:intron 35.0%
AGAAGAACATGAACAAAGAG+TGG + chr5_4:62139365-62139384 None:intergenic 35.0%
AAATGAATCACCATGAGTTG+AGG + chr5_4:62139396-62139415 None:intergenic 35.0%
!!! CCTTTTTTTCAACCAATCAG+CGG - chr5_4:62139438-62139457 Msa0862480:intron 35.0%
! TTCTTTTCTGTTCAAGACTG+TGG - chr5_4:62139611-62139630 Msa0862480:intron 35.0%
TGATTTCCACTTTCCATGAA+TGG - chr5_4:62139760-62139779 Msa0862480:intron 35.0%
TACTAAGCTCTTACCATTCA+TGG + chr5_4:62139776-62139795 None:intergenic 35.0%
AGCTTAGTAATTGTGACATC+TGG - chr5_4:62139787-62139806 Msa0862480:intron 35.0%
!! TTAGCTATTTTCTCTTGCTC+AGG + chr5_4:62139878-62139897 None:intergenic 35.0%
GAACAACAAGAGAAGCAATT+GGG - chr5_4:62139908-62139927 Msa0862480:intron 35.0%
! ATTAACCATAGCACCGAATT+GGG + chr5_4:62140060-62140079 None:intergenic 35.0%
! AATTAACCATAGCACCGAAT+TGG + chr5_4:62140061-62140080 None:intergenic 35.0%
ACTGTATTGGAGCTTGAAAA+TGG - chr5_4:62140119-62140138 Msa0862480:intron 35.0%
CTGTATTGGAGCTTGAAAAT+GGG - chr5_4:62140120-62140139 Msa0862480:intron 35.0%
CGGCAAAAAGAACCAAATCT+TGG + chr5_4:62136240-62136259 None:intergenic 40.0%
TCAATGGTTGTTAGAGAGAG+AGG + chr5_4:62136278-62136297 None:intergenic 40.0%
TTTCACTCACACTCTCACTT+GGG - chr5_4:62136327-62136346 Msa0862480:three_prime_UTR 40.0%
AAGATGAGAATTTGTGGAGC+AGG - chr5_4:62136554-62136573 Msa0862480:three_prime_UTR 40.0%
GAATGGAGGGAGTAAGATTT+AGG + chr5_4:62136851-62136870 None:intergenic 40.0%
! AGCTCTTGGCACAAGTTTTA+AGG - chr5_4:62136889-62136908 Msa0862480:intron 40.0%
! GGTCTTATAATTAGGGAAGG+AGG - chr5_4:62137395-62137414 Msa0862480:intron 40.0%
AGAAACAGCAAAACCTCGAA+AGG + chr5_4:62137838-62137857 None:intergenic 40.0%
AAAATCTAGAAAGCGAGGGT+AGG + chr5_4:62138204-62138223 None:intergenic 40.0%
GACAGAAAATCTAGAAAGCG+AGG + chr5_4:62138209-62138228 None:intergenic 40.0%
TGGTTACAGTAAAATGGGGA+CGG + chr5_4:62138258-62138277 None:intergenic 40.0%
! GGCTTGGTTACAGTAAAATG+GGG + chr5_4:62138262-62138281 None:intergenic 40.0%
! GGGCTTGGTTACAGTAAAAT+GGG + chr5_4:62138263-62138282 None:intergenic 40.0%
! AGGGCTTGGTTACAGTAAAA+TGG + chr5_4:62138264-62138283 None:intergenic 40.0%
TTGTTCAGAAGGTTCATGGA+GGG + chr5_4:62138283-62138302 None:intergenic 40.0%
TTTGTTCAGAAGGTTCATGG+AGG + chr5_4:62138284-62138303 None:intergenic 40.0%
ATGGATTCAACCATTCCTCA+GGG - chr5_4:62138337-62138356 Msa0862480:CDS 40.0%
!! GTGTTGAATTAGTCTTCCAG+AGG - chr5_4:62138425-62138444 Msa0862480:five_prime_UTR 40.0%
TACAACCTCATTGTGGTTTG+TGG + chr5_4:62138533-62138552 None:intergenic 40.0%
CAAACCACAATGAGGTTGTA+AGG - chr5_4:62138533-62138552 Msa0862480:five_prime_UTR 40.0%
CGTATCAAGCAGATTCTCAA+AGG + chr5_4:62138584-62138603 None:intergenic 40.0%
AGAATCTGCTTGATACGTTC+TGG - chr5_4:62138587-62138606 Msa0862480:five_prime_UTR 40.0%
ACTCACAATTCGCAAACAAG+AGG + chr5_4:62138699-62138718 None:intergenic 40.0%
TTGGGTCAAATCAAATTCCC+AGG - chr5_4:62139016-62139035 Msa0862480:intron 40.0%
TCTTGTCACTGAGTATGTGA+TGG - chr5_4:62139050-62139069 Msa0862480:intron 40.0%
AACCGCGAATTATGTGACTA+TGG + chr5_4:62139158-62139177 None:intergenic 40.0%
ACATAATTCGCGGTTCGTTT+CGG - chr5_4:62139163-62139182 Msa0862480:intron 40.0%
GAGAAGAATTCGGTACGTAT+AGG - chr5_4:62139222-62139241 Msa0862480:intron 40.0%
GAAGAATTCGGTACGTATAG+GGG - chr5_4:62139224-62139243 Msa0862480:intron 40.0%
! CCGCTGATTGGTTGAAAAAA+AGG + chr5_4:62139441-62139460 None:intergenic 40.0%
ATCAAGGGAGAATTGCGAAT+TGG + chr5_4:62139542-62139561 None:intergenic 40.0%
CTCTTACCATTCATGGAAAG+TGG + chr5_4:62139769-62139788 None:intergenic 40.0%
TCTGGATCTTTGTATGTGAC+AGG - chr5_4:62139805-62139824 Msa0862480:intron 40.0%
CTGGATCTTTGTATGTGACA+GGG - chr5_4:62139806-62139825 Msa0862480:intron 40.0%
TGGATCTTTGTATGTGACAG+GGG - chr5_4:62139807-62139826 Msa0862480:intron 40.0%
GGAACAACAAGAGAAGCAAT+TGG - chr5_4:62139907-62139926 Msa0862480:intron 40.0%
!! CTTTCTCAAGGTACTGTTGA+TGG + chr5_4:62139991-62140010 None:intergenic 40.0%
CATCAACAGTACCTTGAGAA+AGG - chr5_4:62139989-62140008 Msa0862480:intron 40.0%
TTCAAGCAATCTGCTGCTAA+AGG - chr5_4:62140025-62140044 Msa0862480:intron 40.0%
AAGGATGCAATGACCCAATT+CGG - chr5_4:62140044-62140063 Msa0862480:intron 40.0%
GGATCAATACGACACTGTAT+TGG - chr5_4:62140106-62140125 Msa0862480:five_prime_UTR 40.0%
ATGGGGTTCAATGTCTCAAA+AGG - chr5_4:62140329-62140348 Msa0862480:five_prime_UTR 40.0%
GTTGTTAGAGAGAGAGGATG+AGG + chr5_4:62136272-62136291 None:intergenic 45.0%
CTTTCACTCACACTCTCACT+TGG - chr5_4:62136326-62136345 Msa0862480:three_prime_UTR 45.0%
GAGAATTTGTGGAGCAGGTA+TGG - chr5_4:62136559-62136578 Msa0862480:three_prime_UTR 45.0%
AGGCTCCGTTCAAAAAACAG+AGG - chr5_4:62137450-62137469 Msa0862480:intron 45.0%
AGCAAAACCTCGAAAGGACT+CGG + chr5_4:62137832-62137851 None:intergenic 45.0%
! GTTTTCTTGGCATCCCAACT+TGG - chr5_4:62137977-62137996 Msa0862480:intron 45.0%
AACATAAGGGCCACCAAGTT+GGG + chr5_4:62137993-62138012 None:intergenic 45.0%
AAACATAAGGGCCACCAAGT+TGG + chr5_4:62137994-62138013 None:intergenic 45.0%
AACAAACACTAGCAAGGAGC+TGG + chr5_4:62138146-62138165 None:intergenic 45.0%
GGTTACAGTAAAATGGGGAC+GGG + chr5_4:62138257-62138276 None:intergenic 45.0%
AACTTGGATTTGGCAGTGCA+AGG - chr5_4:62138302-62138321 Msa0862480:CDS 45.0%
ATTTGGCAGTGCAAGGTCAT+CGG - chr5_4:62138309-62138328 Msa0862480:CDS 45.0%
CATGGATTCAACCATTCCTC+AGG - chr5_4:62138336-62138355 Msa0862480:CDS 45.0%
!!! GTCAGCAGTTTGCTGCTTTT+GGG - chr5_4:62138386-62138405 Msa0862480:exon 45.0%
!!! TCAGCAGTTTGCTGCTTTTG+GGG - chr5_4:62138387-62138406 Msa0862480:exon 45.0%
ACCTCTGTCTTACTAACTCC+AGG + chr5_4:62138454-62138473 None:intergenic 45.0%
GGAGTTAGTAAGACAGAGGT+TGG - chr5_4:62138454-62138473 Msa0862480:five_prime_UTR 45.0%
TACGCGACAGGAGAAGAATT+CGG - chr5_4:62139212-62139231 Msa0862480:intron 45.0%
! CGTATAGGGGTATACAGCTT+CGG - chr5_4:62139237-62139256 Msa0862480:intron 45.0%
AGAGTGGAGAGTGAGAAACT+TGG + chr5_4:62139349-62139368 None:intergenic 45.0%
AAAGCATGGTTACCGCTGAT+TGG + chr5_4:62139453-62139472 None:intergenic 45.0%
AATCAGCGGTAACCATGCTT+TGG - chr5_4:62139452-62139471 Msa0862480:intron 45.0%
TAACCATGCTTTGGTACGCT+TGG - chr5_4:62139461-62139480 Msa0862480:intron 45.0%
TATTGGTACGCACAAACCAG+CGG + chr5_4:62139488-62139507 None:intergenic 45.0%
! AGTACCGAATTCGGGTACTT+CGG + chr5_4:62139513-62139532 None:intergenic 45.0%
!! TGGTACGTGAGTACCGAATT+CGG + chr5_4:62139522-62139541 None:intergenic 45.0%
TATGTGACAGGGGAATGATG+TGG - chr5_4:62139817-62139836 Msa0862480:intron 45.0%
ATGTGACAGGGGAATGATGT+GGG - chr5_4:62139818-62139837 Msa0862480:intron 45.0%
AACAAGAGAAGCAATTGGGC+AGG - chr5_4:62139912-62139931 Msa0862480:intron 45.0%
TTCCTGCCAAGAAGTTCTAC+AGG - chr5_4:62139954-62139973 Msa0862480:intron 45.0%
TCCTGCCAAGAAGTTCTACA+GGG - chr5_4:62139955-62139974 Msa0862480:intron 45.0%
CAACAGTACCTTGAGAAAGG+TGG - chr5_4:62139992-62140011 Msa0862480:intron 45.0%
CTTGAGAAAGGTGGTCGATT+CGG - chr5_4:62140001-62140020 Msa0862480:intron 45.0%
!! AATGACCCAATTCGGTGCTA+TGG - chr5_4:62140052-62140071 Msa0862480:intron 45.0%
! CAGTGTCGTATTGATCCTTG+AGG + chr5_4:62140103-62140122 None:intergenic 45.0%
AGACATTGAACCCCATCAAG+CGG + chr5_4:62140325-62140344 None:intergenic 45.0%
AGAGGATGAGGATTCGCTCA+CGG + chr5_4:62136260-62136279 None:intergenic 50.0%
TTGATTCCCGAGTCCTTTCG+AGG - chr5_4:62137822-62137841 Msa0862480:intron 50.0%
GCAAAACCTCGAAAGGACTC+GGG + chr5_4:62137831-62137850 None:intergenic 50.0%
TTCTTGGCATCCCAACTTGG+TGG - chr5_4:62137980-62137999 Msa0862480:intron 50.0%
!!! GAACTTGGTTTTGGCAGGAG+TGG + chr5_4:62138182-62138201 None:intergenic 50.0%
!!! GGTAGGAACTTGGTTTTGGC+AGG + chr5_4:62138187-62138206 None:intergenic 50.0%
! CGAGGGTAGGAACTTGGTTT+TGG + chr5_4:62138191-62138210 None:intergenic 50.0%
AGAAAGCGAGGGTAGGAACT+TGG + chr5_4:62138197-62138216 None:intergenic 50.0%
!! CGGGTTGGTGAAAACAAGCA+AGG + chr5_4:62138238-62138257 None:intergenic 50.0%
ACAGTAAAATGGGGACGGGT+TGG + chr5_4:62138253-62138272 None:intergenic 50.0%
ATATCGTCATCTGGTCCCTG+AGG + chr5_4:62138355-62138374 None:intergenic 50.0%
!! GGTGCTGGTATATCGTCATC+TGG + chr5_4:62138364-62138383 None:intergenic 50.0%
GATGACGATATACCAGCACC+AGG - chr5_4:62138364-62138383 Msa0862480:CDS 50.0%
AAAGCAGCAAACTGCTGACC+TGG + chr5_4:62138385-62138404 None:intergenic 50.0%
!!! GGTCAGCAGTTTGCTGCTTT+TGG - chr5_4:62138385-62138404 Msa0862480:exon 50.0%
GCCTGGAGTTAGTAAGACAG+AGG - chr5_4:62138450-62138469 Msa0862480:five_prime_UTR 50.0%
! ACAGAGGTTGGTTACACCCA+GGG - chr5_4:62138466-62138485 Msa0862480:five_prime_UTR 50.0%
AGGATTGTGCAAAAGCCCCT+GGG + chr5_4:62138485-62138504 None:intergenic 50.0%
TAGGATTGTGCAAAAGCCCC+TGG + chr5_4:62138486-62138505 None:intergenic 50.0%
AGGGACCACAAACCACAATG+AGG - chr5_4:62138525-62138544 Msa0862480:five_prime_UTR 50.0%
GGACCCTTACAACCTCATTG+TGG + chr5_4:62138540-62138559 None:intergenic 50.0%
TCCTACTACGCCAAATCGAC+AGG - chr5_4:62138621-62138640 Msa0862480:intron 50.0%
!! ACCTGTCGATTTGGCGTAGT+AGG + chr5_4:62138625-62138644 None:intergenic 50.0%
TATACAGCTTCGGTACGCTC+CGG - chr5_4:62139247-62139266 Msa0862480:intron 50.0%
CTCACTCAGTCCTCAACTCA+TGG - chr5_4:62139383-62139402 Msa0862480:intron 50.0%
ATTCGGGTACTTCGGCGTAT+TGG + chr5_4:62139505-62139524 None:intergenic 50.0%
! TACGCCGAAGTACCCGAATT+CGG - chr5_4:62139506-62139525 Msa0862480:intron 50.0%
!! GGTACGTGAGTACCGAATTC+GGG + chr5_4:62139521-62139540 None:intergenic 50.0%
GTGGGAACACAGTACAGATC+TGG - chr5_4:62139836-62139855 Msa0862480:intron 50.0%
CTCAGCCCTGTAGAACTTCT+TGG + chr5_4:62139963-62139982 None:intergenic 50.0%
CAAGAAGTTCTACAGGGCTG+AGG - chr5_4:62139961-62139980 Msa0862480:intron 50.0%
CGAATCGACCACCTTTCTCA+AGG + chr5_4:62140003-62140022 None:intergenic 50.0%
ACAGAATCACCCCGCTTGAT+GGG - chr5_4:62140311-62140330 Msa0862480:intron 50.0%
ACATTGAACCCCATCAAGCG+GGG + chr5_4:62140323-62140342 None:intergenic 50.0%
GACATTGAACCCCATCAAGC+GGG + chr5_4:62140324-62140343 None:intergenic 50.0%
!! GGTTTTGGCAGGAGTGGAGA+AGG + chr5_4:62138176-62138195 None:intergenic 55.0%
CAGAAGGTTCATGGAGGGCT+TGG + chr5_4:62138278-62138297 None:intergenic 55.0%
TGCAAGGTCATCGGAGAGCA+TGG - chr5_4:62138318-62138337 Msa0862480:CDS 55.0%
GTCATCTGGTCCCTGAGGAA+TGG + chr5_4:62138350-62138369 None:intergenic 55.0%
!!! CAGTTTGCTGCTTTTGGGGC+TGG - chr5_4:62138391-62138410 Msa0862480:five_prime_UTR 55.0%
!!! TTTTGGGGCTGGCTGCTTCT+GGG - chr5_4:62138402-62138421 Msa0862480:five_prime_UTR 55.0%
!! TTAGTCTTCCAGAGGGTGCC+TGG - chr5_4:62138433-62138452 Msa0862480:five_prime_UTR 55.0%
TACTAACTCCAGGCACCCTC+TGG + chr5_4:62138444-62138463 None:intergenic 55.0%
! GACAGAGGTTGGTTACACCC+AGG - chr5_4:62138465-62138484 Msa0862480:five_prime_UTR 55.0%
! CAGAGGTTGGTTACACCCAG+GGG - chr5_4:62138467-62138486 Msa0862480:five_prime_UTR 55.0%
GTTCGTTTCGGTACGCGGTA+CGG - chr5_4:62139175-62139194 Msa0862480:intron 55.0%
TTCGTTTCGGTACGCGGTAC+GGG - chr5_4:62139176-62139195 Msa0862480:intron 55.0%
GGACCAAGCGTACCAAAGCA+TGG + chr5_4:62139467-62139486 None:intergenic 55.0%
GCCCTGTAGAACTTCTTGGC+AGG + chr5_4:62139959-62139978 None:intergenic 55.0%
AGCGGGGTGATTCTGTGAGA+AGG + chr5_4:62140307-62140326 None:intergenic 55.0%
CACAGAATCACCCCGCTTGA+TGG - chr5_4:62140310-62140329 Msa0862480:intron 55.0%
CAGAATCACCCCGCTTGATG+GGG - chr5_4:62140312-62140331 Msa0862480:intron 55.0%
!! GGAGCTGGACGTGGTGCTAT+AGG + chr5_4:62138131-62138150 None:intergenic 60.0%
CACTAGCAAGGAGCTGGACG+TGG + chr5_4:62138140-62138159 None:intergenic 60.0%
GCAAACTGCTGACCTGGTGC+TGG + chr5_4:62138379-62138398 None:intergenic 60.0%
!!! CTTTTGGGGCTGGCTGCTTC+TGG - chr5_4:62138401-62138420 Msa0862480:five_prime_UTR 60.0%
!! TTTGGGGCTGGCTGCTTCTG+GGG - chr5_4:62138403-62138422 Msa0862480:five_prime_UTR 60.0%
TCGCGGTTCGTTTCGGTACG+CGG - chr5_4:62139170-62139189 Msa0862480:intron 60.0%
TTCGGTACGCGGTACGGGTA+CGG - chr5_4:62139181-62139200 Msa0862480:intron 60.0%
CTTTGGTACGCTTGGTCCGC+TGG - chr5_4:62139469-62139488 Msa0862480:intron 60.0%
!! CGTGGTGCTATAGGCGCTGC+TGG + chr5_4:62138122-62138141 None:intergenic 65.0%
TCGGTACGCGGTACGGGTAC+GGG - chr5_4:62139182-62139201 Msa0862480:intron 65.0%
GCGGTACGGGTACGGGTTCG+CGG - chr5_4:62139189-62139208 Msa0862480:intron 70.0%
ACGGGTTCGCGGTACGCGAC+AGG - chr5_4:62139200-62139219 Msa0862480:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 62136209 62140465 62136209 ID=Msa0862480;Name=Msa0862480
chr5_4 mRNA 62136209 62140465 62136209 ID=Msa0862480-mRNA-1;Parent=Msa0862480;Name=Msa0862480-mRNA-1;_AED=0.26;_eAED=0.26;_QI=373|1|1|1|0.25|0.2|5|387|202
chr5_4 exon 62136209 62136847 62136209 ID=Msa0862480-mRNA-1:exon:19372;Parent=Msa0862480-mRNA-1
chr5_4 exon 62138032 62138621 62138032 ID=Msa0862480-mRNA-1:exon:19371;Parent=Msa0862480-mRNA-1
chr5_4 exon 62140099 62140128 62140099 ID=Msa0862480-mRNA-1:exon:19370;Parent=Msa0862480-mRNA-1
chr5_4 exon 62140326 62140360 62140326 ID=Msa0862480-mRNA-1:exon:19369;Parent=Msa0862480-mRNA-1
chr5_4 exon 62140391 62140465 62140391 ID=Msa0862480-mRNA-1:exon:19368;Parent=Msa0862480-mRNA-1
chr5_4 five_prime_UTR 62140391 62140465 62140391 ID=Msa0862480-mRNA-1:five_prime_utr;Parent=Msa0862480-mRNA-1
chr5_4 five_prime_UTR 62140326 62140360 62140326 ID=Msa0862480-mRNA-1:five_prime_utr;Parent=Msa0862480-mRNA-1
chr5_4 five_prime_UTR 62140099 62140128 62140099 ID=Msa0862480-mRNA-1:five_prime_utr;Parent=Msa0862480-mRNA-1
chr5_4 five_prime_UTR 62138389 62138621 62138389 ID=Msa0862480-mRNA-1:five_prime_utr;Parent=Msa0862480-mRNA-1
chr5_4 CDS 62138032 62138388 62138032 ID=Msa0862480-mRNA-1:cds;Parent=Msa0862480-mRNA-1
chr5_4 CDS 62136596 62136847 62136596 ID=Msa0862480-mRNA-1:cds;Parent=Msa0862480-mRNA-1
chr5_4 three_prime_UTR 62136209 62136595 62136209 ID=Msa0862480-mRNA-1:three_prime_utr;Parent=Msa0862480-mRNA-1
Gene Sequence

>Msa0862480

ATGAACCTTCTGAACAAACTTGGATTTGGCAGTGCAAGGTCATCGGAGAGCATGGATTCAACCATTCCTCAGGGACCAGATGACGATATACCAGCACCAGGTCAGCAGTTTGCTGCTTTTGGGGCTGGCTGCTTCTGGGGTGTTGAATTAGTCTTCCAGAGGGTGCCTGGAGTTAGTAAGACAGAGGTTGGTTACACCCAGGGGCTTTTGCACAATCCTACTTATGAAGATGTGTGTTCAGGGACCACAAACCACAATGAGGTTGTAAGGGTCCAATATGATCCCAAACAATGTGCCTTTGAGAATCTGCTTGATACGTTCTGGTCGAAACATGATCCTACTACGCCAAATCGACAGGGGAATGATGTGGGAACACAGTACAGATCTGGAATATACTTTTACACTCCTGAGCAAGAGAAAATAGCTAAAGAGTCTTTGGAACAACAAGAGAAGCAATTGGGCAGGAAGATTGCTACTGAGATTCTTCCTGCCAAGAAGTTCTACAGGGCTGAGGAGTACCATCAACAGTACCTTGAGAAAGGTGGTCGATTCGGTTTCAAGCAATCTGCTGCTAAAGGATGCAATGACCCAATTCGGTGCTATGGTTAA

Protein sequence

>Msa0862480

MNLLNKLGFGSARSSESMDSTIPQGPDDDIPAPGQQFAAFGAGCFWGVELVFQRVPGVSKTEVGYTQGLLHNPTYEDVCSGTTNHNEVVRVQYDPKQCAFENLLDTFWSKHDPTTPNRQGNDVGTQYRSGIYFYTPEQEKIAKESLEQQEKQLGRKIATEILPAKKFYRAEEYHQQYLEKGGRFGFKQSAAKGCNDPIRCYG*