AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443930 MtrunA17_Chr8g0344311 99.349 614 2 1 1 612 1 614 0.0 1224
Msa1443930 MtrunA17_Chr1g0161371 88.130 615 66 4 1 612 1 611 0.0 1026
Msa1443930 MtrunA17_Chr8g0391771 83.495 618 94 5 1 612 1 616 0.0 1004
Msa1443930 MtrunA17_Chr2g0290411 49.180 549 243 9 53 581 13 545 3.40e-150 444
Msa1443930 MtrunA17_Chr4g0076251 49.720 535 242 10 52 567 25 551 1.60e-149 443
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443930 AT1G24764.1 75.743 639 123 11 1 612 1 634 0.0 902
Msa1443930 AT1G24764.3 75.743 639 123 11 1 612 60 693 0.0 902
Msa1443930 AT1G68060.1 75.829 633 121 12 1 612 1 622 0.0 900
Msa1443930 AT1G14840.1 74.013 608 132 11 17 612 11 604 0.0 829
Msa1443930 AT2G01750.1 74.915 590 132 8 29 612 50 629 0.0 826
Msa1443930 AT2G01750.2 74.788 591 132 9 29 612 50 630 0.0 821
Msa1443930 AT1G14840.2 71.711 608 131 12 17 612 11 589 0.0 787
Msa1443930 AT1G24764.2 79.630 486 88 7 133 612 1 481 0.0 749
Msa1443930 AT4G17220.1 47.037 540 247 10 53 588 6 510 1.18e-135 406

Find 176 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATAAGCTTGATGTTAT+TGG 0.130348 tig0030602:+36445 None:intergenic
TTCAATTAGTGCCGCTTCTT+TGG 0.223340 tig0030602:+38942 None:intergenic
AAGATGCTTCTTCTTCTTCT+TGG 0.232730 tig0030602:+43717 None:intergenic
AGAGAGAAACAGATGTTAAT+TGG 0.235223 tig0030602:-37696 Msa1443930:CDS
TCATCCATGGCGGATGTTTC+CGG 0.236748 tig0030602:-43639 Msa1443930:exon
TTCTCAAAACCAACCTCTAA+TGG 0.241419 tig0030602:-37907 Msa1443930:CDS
TTCTAGCTCCCTTACAGTTT+GGG 0.252166 tig0030602:+38666 None:intergenic
TGATTCTGAGCACTGTTTAC+AGG 0.265068 tig0030602:+37261 None:intergenic
AACATCTGTTTCTCTCTCTT+TGG 0.269005 tig0030602:+37702 None:intergenic
CTTCTAGCTCCCTTACAGTT+TGG 0.274253 tig0030602:+38665 None:intergenic
GCTCAGAATCAGCTAATTTC+TGG 0.278957 tig0030602:-37249 Msa1443930:CDS
AGAAGCAATTCTTGCTCCTT+TGG 0.279703 tig0030602:-39163 Msa1443930:CDS
CTAGAAGAGGCTGTCCTTGC+AGG 0.291437 tig0030602:-38649 Msa1443930:CDS
CCGGCGCCGCTTTCAGTTCC+CGG 0.295615 tig0030602:-43594 Msa1443930:CDS
GGAGCAAGAATTGCTTCTAT+TGG 0.301222 tig0030602:+39168 None:intergenic
TGCCTCAACTTCCATGGCTT+TGG 0.302400 tig0030602:+37395 None:intergenic
GGTTACCATCCTTTCAATTA+AGG 0.302608 tig0030602:-37870 Msa1443930:CDS
CTCCGCGAGGCAACCGAGTA+TGG 0.302776 tig0030602:-43535 Msa1443930:CDS
ATAATAAGCTTGATGTTATT+GGG 0.314258 tig0030602:+36446 None:intergenic
GGATTTGGTAAGACGGTCTA+AGG 0.317342 tig0030602:+38963 None:intergenic
CTTGATTATAAGATTGTAAC+TGG 0.322306 tig0030602:-36338 Msa1443930:three_prime_UTR
CAGTGAAGGTTGAGCTTAAT+CGG 0.325939 tig0030602:-43473 Msa1443930:CDS
TAGTGCCGCTTCTTTGGATT+TGG 0.336670 tig0030602:+38948 None:intergenic
GAGCAAGAATTGCTTCTATT+GGG 0.338217 tig0030602:+39169 None:intergenic
CAGAAGAATAAAACATAGTA+TGG 0.338758 tig0030602:+36374 None:intergenic
CTTTGGTTTCTTCAAGAGAT+TGG 0.352553 tig0030602:+37719 None:intergenic
ATGAAAATATTAGAAATTAT+AGG 0.352794 tig0030602:+35892 None:intergenic
AAAGCGGTTCAGCAATATAA+AGG 0.353628 tig0030602:-37292 Msa1443930:CDS
TGAAGAACGTCGATTCTTGC+AGG 0.357777 tig0030602:-38330 Msa1443930:intron
TCAGGAAGAAAATAAAATAT+TGG 0.359694 tig0030602:-38731 Msa1443930:intron
TCTCAAAACCAACCTCTAAT+GGG 0.370707 tig0030602:-37906 Msa1443930:CDS
TTGGTTAAACGAATAACTTT+GGG 0.372655 tig0030602:+37738 None:intergenic
TGTTCAGGTTGCCTTGGTTA+AGG 0.376565 tig0030602:-38908 Msa1443930:CDS
ATTGGTTAAACGAATAACTT+TGG 0.382076 tig0030602:+37737 None:intergenic
GATACAGAGGATAGTGTTCC+AGG 0.384107 tig0030602:-37631 Msa1443930:CDS
TCACGAAAAGCTCTTCTTCT+CGG 0.387832 tig0030602:-43566 Msa1443930:CDS
GAGGATAAGAAAATGAATTC+AGG 0.388083 tig0030602:-36278 Msa1443930:three_prime_UTR
TTTGAGTGGTGTGTTTGTAT+AGG 0.394633 tig0030602:-36149 Msa1443930:three_prime_UTR
AAAAGATTTAGATGTTCCTT+TGG 0.396460 tig0030602:+37813 None:intergenic
CTTCTTTGCCTCAACTTCCA+TGG 0.400320 tig0030602:+37389 None:intergenic
AAGTACTAGAGGAGAGTTTG+AGG 0.414680 tig0030602:-38017 Msa1443930:CDS
CATGAATCTGTTGCACGGTT+CGG 0.424974 tig0030602:-43499 Msa1443930:CDS
CACCGTAGCTACTCTATTTG+CGG 0.426008 tig0030602:+38409 None:intergenic
TTCCGGCGACGGAGCTGAAA+TGG 0.428527 tig0030602:-43622 Msa1443930:CDS
TGAGCACTGTTTACAGGGCC+AGG 0.429111 tig0030602:+37267 None:intergenic
AGTGTTGAGTAAACTTTCAT+AGG 0.431405 tig0030602:-36410 Msa1443930:three_prime_UTR
ACTTATATGTTCTCCACAAC+GGG 0.432528 tig0030602:+35943 None:intergenic
AGATTCAGATCTAAGTGTAT+TGG 0.437239 tig0030602:-36033 Msa1443930:three_prime_UTR
TGAAGCCGAAAAGACTGTTC+AGG 0.438906 tig0030602:-38923 Msa1443930:CDS
GAAAGGAAATTCAGATGATA+AGG 0.438934 tig0030602:-37674 Msa1443930:CDS
CGTAGAGAGATCGGCTAAGA+AGG 0.446796 tig0030602:-36217 Msa1443930:three_prime_UTR
TTGCTTACACTTCTTCCCTC+AGG 0.450125 tig0030602:+37964 None:intergenic
CGGAGCTGAAATGGCGACGC+CGG 0.450733 tig0030602:-43613 Msa1443930:CDS
CTGTCAGATGTTAGCAAAGA+AGG 0.450927 tig0030602:-37430 Msa1443930:intron
TGCTTACACTTCTTCCCTCA+GGG 0.455039 tig0030602:+37965 None:intergenic
AAAAGCTCACCCAAACTGTA+AGG 0.456426 tig0030602:-38675 Msa1443930:CDS
CAAGTTTCTGATGTTGGACA+TGG 0.459037 tig0030602:-36304 Msa1443930:three_prime_UTR
AGTACTAGAGGAGAGTTTGA+GGG 0.460626 tig0030602:-38016 Msa1443930:CDS
TTCAATACTGAGCTAGAAGA+TGG 0.461459 tig0030602:+37841 None:intergenic
TCTTCAAGCCATTGTTTGAC+AGG 0.463739 tig0030602:+38347 None:intergenic
TACTCTATTTGCGGTTACCT+TGG 0.466980 tig0030602:+38418 None:intergenic
CGCCATTTCAGCTCCGTCGC+CGG 0.470645 tig0030602:+43620 None:intergenic
CGAAGACAAGTTTCTGATGT+TGG 0.474177 tig0030602:-36310 Msa1443930:three_prime_UTR
TTGAGGCAAAGAAGATGAGA+AGG 0.474623 tig0030602:-37380 Msa1443930:CDS
AAGAAAATGAATTCAGGAAC+CGG 0.475492 tig0030602:-36272 Msa1443930:three_prime_UTR
TAACATCAAGCTTATTATAG+TGG 0.475646 tig0030602:-36441 Msa1443930:three_prime_UTR
ATATGATCTCCTGCAGAAAG+AGG 0.478732 tig0030602:-37602 Msa1443930:CDS
TGCCTTGGTTAAGGCCTCCA+TGG 0.478833 tig0030602:-38899 Msa1443930:CDS
CTACGGTGGTTGCAAATGAA+TGG 0.479682 tig0030602:-38394 Msa1443930:CDS
AGCAATTCTTGCTCCTTTGG+AGG 0.480043 tig0030602:-39160 Msa1443930:CDS
TGATGGCAAGCTAAAATTAA+CGG 0.487466 tig0030602:-39411 Msa1443930:CDS
CCGGGAACTGAAAGCGGCGC+CGG 0.487898 tig0030602:+43594 None:intergenic
ATAGTGTGATTGTGTTGGTT+CGG 0.489185 tig0030602:-36077 Msa1443930:three_prime_UTR
CGATTAAGCTCAACCTTCAC+TGG 0.491809 tig0030602:+43474 None:intergenic
GTCATGACCTTGAGGAAAGC+TGG 0.495312 tig0030602:-37580 Msa1443930:CDS
GAGAGAGAGTGTGAAAATGG+TGG 0.495993 tig0030602:+43681 None:intergenic
AGGAATAAAATGCAGCTGAA+TGG 0.499339 tig0030602:-37766 Msa1443930:CDS
CTATCCTCTGTATCCACTGT+TGG 0.500010 tig0030602:+37640 None:intergenic
ATGGCGGATGTTTCCGGCGA+CGG 0.500646 tig0030602:-43633 Msa1443930:CDS
GAAACAGATGTTAATTGGAA+AGG 0.502395 tig0030602:-37691 Msa1443930:CDS
AAAGACTGTTCAGGTTGCCT+TGG 0.505372 tig0030602:-38914 Msa1443930:CDS
AGATAAAGACGATGCTATTG+AGG 0.506040 tig0030602:-37533 Msa1443930:intron
GATTCTGAGCACTGTTTACA+GGG 0.509732 tig0030602:+37262 None:intergenic
AGGTCATGACCTCTTTCTGC+AGG 0.510001 tig0030602:+37593 None:intergenic
GAGCACTGTTTACAGGGCCA+GGG 0.513679 tig0030602:+37268 None:intergenic
TGAAAGGATGGTAACCGCTT+AGG 0.519905 tig0030602:+37877 None:intergenic
GATGAACTGTCAAAGGTTGA+TGG 0.521132 tig0030602:-39428 Msa1443930:CDS
CTGATGTTGGACATGGATTG+AGG 0.522131 tig0030602:-36297 Msa1443930:three_prime_UTR
GCCATGGATGATTGAAATGC+TGG 0.522330 tig0030602:+43651 None:intergenic
TGAGGCAAAGAAGATGAGAA+GGG 0.522446 tig0030602:-37379 Msa1443930:CDS
AAGCTTATTATAGTGGCGCT+TGG 0.523177 tig0030602:-36434 Msa1443930:three_prime_UTR
AATTCTCGTCGGCAATCTCT+AGG 0.523539 tig0030602:-37943 Msa1443930:CDS
GATGACCTTAATTGAAAGGA+TGG 0.525501 tig0030602:+37865 None:intergenic
TATTTGCGGTTACCTTGGCA+CGG 0.525808 tig0030602:+38423 None:intergenic
CAACATCAGAAACTTGTCTT+CGG 0.525835 tig0030602:+36311 None:intergenic
AAGCGGTTCAGCAATATAAA+GGG 0.526321 tig0030602:-37291 Msa1443930:CDS
GGAAGTAGCCAACATGGAAA+AGG 0.530015 tig0030602:-37358 Msa1443930:CDS
GTACTAGAGGAGAGTTTGAG+GGG 0.532343 tig0030602:-38015 Msa1443930:CDS
AGTGAAGCATTCACCCGTTG+TGG 0.532738 tig0030602:-35956 Msa1443930:three_prime_UTR
ACAATAGAAGACAATTAACT+TGG 0.533588 tig0030602:-36191 Msa1443930:three_prime_UTR
TATCCTCTGTATCCACTGTT+GGG 0.534369 tig0030602:+37641 None:intergenic
TTCAGCAATATAAAGGGCCC+TGG 0.538699 tig0030602:-37285 Msa1443930:CDS
CTGCTGAAGCTACTCTTCGA+AGG 0.540526 tig0030602:-39224 Msa1443930:CDS
GAAACAGATTGAGATTTGCC+AGG 0.542161 tig0030602:-38842 Msa1443930:intron
TATCCTCTGCGTAGAGAGAT+CGG 0.543884 tig0030602:-36226 Msa1443930:three_prime_UTR
AAGGGTACATGCTGCTCAGA+AGG 0.547693 tig0030602:-39205 Msa1443930:CDS
ATCAACCTTTGACAGTTCAT+CGG 0.548852 tig0030602:+39430 None:intergenic
TCAATACTGAGCTAGAAGAT+GGG 0.554005 tig0030602:+37842 None:intergenic
AACTCGTCAGCATCCATACT+CGG 0.554301 tig0030602:+43522 None:intergenic
AGCAAGAATTGCTTCTATTG+GGG 0.554309 tig0030602:+39170 None:intergenic
CTCATTACCAGCTTTCCTCA+AGG 0.556470 tig0030602:+37573 None:intergenic
CGCAGATAGTGTGATTGTGT+TGG 0.557724 tig0030602:-36082 Msa1443930:three_prime_UTR
TCAAAAGATTACCTCTTCAA+CGG 0.560647 tig0030602:+43260 None:intergenic
TGGGGATGACCTTAATTGAA+AGG 0.562293 tig0030602:+37861 None:intergenic
GCATAGACTAAAGGTGGCAG+AGG 0.565614 tig0030602:-38701 Msa1443930:CDS
AACCAAAGCCATGGAAGTTG+AGG 0.566163 tig0030602:-37397 Msa1443930:CDS
GAAGAGGCTGTCCTTGCAGG+TGG 0.569785 tig0030602:-38646 Msa1443930:CDS
GTTAACCGATGAACTGTCAA+AGG 0.570201 tig0030602:-39435 Msa1443930:CDS
CTTCTTTGGATTTGGTAAGA+CGG 0.571194 tig0030602:+38956 None:intergenic
ATTTGCGGTTACCTTGGCAC+GGG 0.572229 tig0030602:+38424 None:intergenic
AACCGCAAATAGAGTAGCTA+CGG 0.574969 tig0030602:-38411 Msa1443930:CDS
GGACAGAATGCATAGACTAA+AGG 0.576267 tig0030602:-38710 Msa1443930:CDS
CGCAGAGGATACAACAGTCT+AGG 0.576285 tig0030602:+36238 None:intergenic
GCACGGTTCGGATCCAGTGA+AGG 0.577059 tig0030602:-43487 Msa1443930:CDS
TTGCAGCAGCACCACCTGCA+AGG 0.579728 tig0030602:+38635 None:intergenic
TACTAGAGGAGAGTTTGAGG+GGG 0.580757 tig0030602:-38014 Msa1443930:CDS
AACTTATATGTTCTCCACAA+CGG 0.581796 tig0030602:+35942 None:intergenic
AGATACATTAACCAAAGCCA+TGG 0.582171 tig0030602:-37406 Msa1443930:CDS
AGTCTAGGTCAGATGCATAC+CGG 0.582212 tig0030602:+36253 None:intergenic
TCGGGAGTTGGCCCGTGCCA+AGG 0.582971 tig0030602:-38435 Msa1443930:CDS
AACGATCCGGGAACTGAAAG+CGG 0.583534 tig0030602:+43588 None:intergenic
GTTACAATCTTATAATCAAG+TGG 0.585703 tig0030602:+36341 None:intergenic
ACGATAAAGTGAGTCAGTGA+AGG 0.588471 tig0030602:+43813 None:intergenic
CGGCTTGAGAATGAAGTTCG+AGG 0.589218 tig0030602:-43453 Msa1443930:intron
GGGGCACAAGGTCACTGGAG+AGG 0.592071 tig0030602:-37786 Msa1443930:CDS
TGATGAAAAGAAAGCAGCAA+TGG 0.592211 tig0030602:-39259 Msa1443930:CDS
AACTGTAAGGGAGCTAGAAG+AGG 0.592925 tig0030602:-38662 Msa1443930:CDS
AGTAGTCGCAGCACCCCTGA+GGG 0.599314 tig0030602:-37979 Msa1443930:CDS
GAGAAGGGAAGTAGCCAACA+TGG 0.599967 tig0030602:-37364 Msa1443930:CDS
ACTAAAACTTGCTCGACAAG+AGG 0.602494 tig0030602:-39133 Msa1443930:intron
ACCAGCATTTCAATCATCCA+TGG 0.602878 tig0030602:-43652 Msa1443930:exon
GTCGCCGGAAACATCCGCCA+TGG 0.605558 tig0030602:+43635 None:intergenic
CAATACTGAGCTAGAAGATG+GGG 0.606926 tig0030602:+37843 None:intergenic
TGCTGAAGCTACTCTTCGAA+GGG 0.610610 tig0030602:-39223 Msa1443930:CDS
CACAGAAGTGTGACACGTGG+AGG 0.611200 tig0030602:-36483 Msa1443930:intron
CAGAATGCATAGACTAAAGG+TGG 0.613852 tig0030602:-38707 Msa1443930:CDS
GCTTACACTTCTTCCCTCAG+GGG 0.618533 tig0030602:+37966 None:intergenic
GGCAAATGACTTCCCAACAG+TGG 0.619817 tig0030602:-37653 Msa1443930:CDS
AAGTGATGCCTGTCAAACAA+TGG 0.623263 tig0030602:-38355 Msa1443930:CDS
AAAGCTCACCCAAACTGTAA+GGG 0.623664 tig0030602:-38674 Msa1443930:CDS
TCTTACCAAATCCAAAGAAG+CGG 0.624399 tig0030602:-38953 Msa1443930:CDS
AGAATCAGCTAATTTCTGGA+AGG 0.627344 tig0030602:-37245 Msa1443930:intron
AGGAGATCATATAAAATACC+TGG 0.629626 tig0030602:+37613 None:intergenic
CAGTAGTCGCAGCACCCCTG+AGG 0.630358 tig0030602:-37980 Msa1443930:CDS
GAAGTGTAAGCAATTCTCGT+CGG 0.633903 tig0030602:-37954 Msa1443930:CDS
ATTACGGCTTAAAGTACTAG+AGG 0.638308 tig0030602:-38028 Msa1443930:CDS
TCAGTATTGAAGAATGCCAA+AGG 0.641224 tig0030602:-37829 Msa1443930:CDS
GCAAGAATTGCTTCTATTGG+GGG 0.641990 tig0030602:+39171 None:intergenic
GAGTTCATGAATCTGTTGCA+CGG 0.643279 tig0030602:-43504 Msa1443930:CDS
AGAAAGAGGTCATGACCTTG+AGG 0.644090 tig0030602:-37588 Msa1443930:CDS
GGAGGTAGCTGCTATGCGTG+TGG 0.645115 tig0030602:-37337 Msa1443930:CDS
AGTAGCCAACATGGAAAAGG+AGG 0.647046 tig0030602:-37355 Msa1443930:CDS
CGCAAATAGAGTAGCTACGG+TGG 0.650139 tig0030602:-38408 Msa1443930:CDS
CACCATGGAGGCCTTAACCA+AGG 0.650505 tig0030602:+38897 None:intergenic
TGGTTAAACGAATAACTTTG+GGG 0.651422 tig0030602:+37739 None:intergenic
AGCTCTTCTTCTCGGAGACG+CGG 0.654689 tig0030602:-43558 Msa1443930:CDS
ATCCATACTCGGTTGCCTCG+CGG 0.672191 tig0030602:+43533 None:intergenic
ATGCAGTTAGAGATTATCAG+AGG 0.672316 tig0030602:-38612 Msa1443930:CDS
CTTGGTTAAGGCCTCCATGG+TGG 0.672391 tig0030602:-38896 Msa1443930:CDS
TCTCGTCGGCAATCTCTAGG+TGG 0.679714 tig0030602:-37940 Msa1443930:CDS
CTTCCCAACAGTGGATACAG+AGG 0.682920 tig0030602:-37644 Msa1443930:CDS
TTGGAGATCATCCACCATGG+AGG 0.683506 tig0030602:+38885 None:intergenic
TTCCACAGAAGTGTGACACG+TGG 0.691881 tig0030602:-36486 Msa1443930:intron
TAGCCGATCTCTCTACGCAG+AGG 0.693754 tig0030602:+36223 None:intergenic
AACAAGAGAACAGAGCAAAG+CGG 0.697116 tig0030602:-37308 Msa1443930:CDS
AGCATTTCAATCATCCATGG+CGG 0.729676 tig0030602:-43649 Msa1443930:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTTTATTTCCTAAT+GGG - tig0030602:36553-36572 Msa1443930:intron 10.0%
!! ATTATTAGAATTAACATATT+TGG - tig0030602:36581-36600 Msa1443930:intron 10.0%
!! ATATAATCAATAAAATAACT+GGG + tig0030602:41161-41180 None:intergenic 10.0%
!! ATGAAAATATTAGAAATTAT+AGG + tig0030602:43807-43826 None:intergenic 10.0%
!!! GATATTATTTTATTTCCTAA+TGG - tig0030602:36552-36571 Msa1443930:intron 15.0%
!! TGCTATAAGAATATAATTAA+GGG + tig0030602:36878-36897 None:intergenic 15.0%
!! ATGCTATAAGAATATAATTA+AGG + tig0030602:36879-36898 None:intergenic 15.0%
!! TGGTTTCTAATAAATAAAAT+TGG - tig0030602:37736-37755 Msa1443930:CDS 15.0%
!! GAGTATTATTATTAAACTAA+AGG + tig0030602:37867-37886 None:intergenic 15.0%
!! AAACTAAAGATAAAACAAAA+TGG + tig0030602:37889-37908 None:intergenic 15.0%
!!! TATTTTCAGTATTTCAATAT+AGG - tig0030602:38028-38047 Msa1443930:CDS 15.0%
!! TGAAAGATAAAAAAAAATTG+TGG - tig0030602:38133-38152 Msa1443930:intron 15.0%
!!! AATATCAATTTTGCTTTTAA+TGG - tig0030602:39773-39792 Msa1443930:intron 15.0%
!!! ACTAACTAAATTGAATATTT+TGG - tig0030602:40388-40407 Msa1443930:intron 15.0%
!!! GTCTTTTAATAAATGATTTT+TGG - tig0030602:40653-40672 Msa1443930:intron 15.0%
!! GATATAATCAATAAAATAAC+TGG + tig0030602:41162-41181 None:intergenic 15.0%
!! TTTATATAAATAAGAAAGGA+GGG + tig0030602:41464-41483 None:intergenic 15.0%
!! ATTTATATAAATAAGAAAGG+AGG + tig0030602:41465-41484 None:intergenic 15.0%
!! AATCTTCTATTATAATAGAT+AGG + tig0030602:41595-41614 None:intergenic 15.0%
!!! ATTAGTTCTTAAATTATTCA+AGG - tig0030602:41612-41631 Msa1443930:intron 15.0%
!!! TATACTTTTTCAAAATTTTC+AGG - tig0030602:41635-41654 Msa1443930:intron 15.0%
!!! ATCTTGTTTATTGTTATTTT+TGG - tig0030602:42191-42210 Msa1443930:intron 15.0%
!!! ATATAAACTATTTCATTTTC+AGG - tig0030602:42663-42682 Msa1443930:intron 15.0%
!! TCAAAATAGCTTATACATAA+GGG + tig0030602:36688-36707 None:intergenic 20.0%
!! ATCAAAATAGCTTATACATA+AGG + tig0030602:36689-36708 None:intergenic 20.0%
!!! GTAGAAAGTATCAAATTAAA+AGG + tig0030602:37819-37838 None:intergenic 20.0%
!! AAAACTAATTTATCCTTGAT+TGG + tig0030602:37946-37965 None:intergenic 20.0%
!! CTTGTGTAAAAAACAATTTA+TGG - tig0030602:38516-38535 Msa1443930:intron 20.0%
!! TAGAAGTAAAACAAAGTATA+TGG - tig0030602:38920-38939 Msa1443930:CDS 20.0%
!! ATAAAACTTGCAATGTTATA+TGG - tig0030602:39175-39194 Msa1443930:CDS 20.0%
!!! TAGTTTAGGTTTGTTTTTAT+CGG - tig0030602:39641-39660 Msa1443930:intron 20.0%
!! ATAAAAATAGACCAAAACAA+AGG + tig0030602:39919-39938 None:intergenic 20.0%
!!! AGTAATTACATTTTCATTGT+TGG - tig0030602:39993-40012 Msa1443930:intron 20.0%
!! AAATGATCATACTGAATAAA+AGG + tig0030602:40081-40100 None:intergenic 20.0%
!! AAATAAAGCAAAAAGAAGAA+AGG + tig0030602:40239-40258 None:intergenic 20.0%
!! ATCATTACTAAAGTGAATAA+AGG + tig0030602:40344-40363 None:intergenic 20.0%
!! TATTCACTTTAGTAATGATT+TGG - tig0030602:40345-40364 Msa1443930:intron 20.0%
!!! TCCATTAATTATTTCTCTTA+GGG + tig0030602:40621-40640 None:intergenic 20.0%
!! TAAGAGAAATAATTAATGGA+GGG - tig0030602:40621-40640 Msa1443930:intron 20.0%
!! GAAGTTAAAGTACATATTTA+AGG + tig0030602:40925-40944 None:intergenic 20.0%
!! TCAGGAAGAAAATAAAATAT+TGG - tig0030602:40965-40984 Msa1443930:intron 20.0%
!! TTATATAAATAAGAAAGGAG+GGG + tig0030602:41463-41482 None:intergenic 20.0%
!! TTCAGGAAAAATATCAATTA+CGG - tig0030602:41652-41671 Msa1443930:intron 20.0%
!! ATAATAAGCTTGATGTTATT+GGG + tig0030602:43253-43272 None:intergenic 20.0%
!! TATAATAAGCTTGATGTTAT+TGG + tig0030602:43254-43273 None:intergenic 20.0%
!! AAAGCATTTCAAAAACTGTT+CGG + tig0030602:36288-36307 None:intergenic 25.0%
!! TGTTTTTCATTGTGTAGATA+AGG - tig0030602:36344-36363 Msa1443930:three_prime_UTR 25.0%
! TCTAATAATATGATCCCATT+AGG + tig0030602:36570-36589 None:intergenic 25.0%
! TTAACATATTTGGAAGTCTT+TGG - tig0030602:36591-36610 Msa1443930:intron 25.0%
! TAACATATTTGGAAGTCTTT+GGG - tig0030602:36592-36611 Msa1443930:intron 25.0%
! TAAACAACTTAGGCATTATT+CGG - tig0030602:36627-36646 Msa1443930:intron 25.0%
! TAAACAGCTTATAGCTTATA+AGG + tig0030602:36742-36761 None:intergenic 25.0%
! GAGAATTTGTGAAAATTAGT+TGG - tig0030602:36776-36795 Msa1443930:intron 25.0%
! AATATAATTAAGGGTCAGTT+TGG + tig0030602:36869-36888 None:intergenic 25.0%
!! GCTATTTCAATAAGCTATAT+TGG - tig0030602:36983-37002 Msa1443930:intron 25.0%
! TCATAATTGCTTATACCAAT+AGG - tig0030602:37057-37076 Msa1443930:intron 25.0%
!! ACTTATTTGAGTTTACCTAT+TGG + tig0030602:37075-37094 None:intergenic 25.0%
! AACTCAAATAAGTAAGTGTT+TGG - tig0030602:37082-37101 Msa1443930:intron 25.0%
! ATTGTAGTTTCAGGATAATT+AGG - tig0030602:37171-37190 Msa1443930:intron 25.0%
! GCTTTAATTAAAAATTGACC+AGG + tig0030602:37557-37576 None:intergenic 25.0%
! TTCCTTCTATTATTGGATAA+TGG + tig0030602:37579-37598 None:intergenic 25.0%
!! TTGTCATTTCCTTCTATTAT+TGG + tig0030602:37586-37605 None:intergenic 25.0%
! TATGAAAACAGAAACTTCAA+TGG + tig0030602:37641-37660 None:intergenic 25.0%
! TTTCATAACTTGAATCTATG+TGG - tig0030602:37654-37673 Msa1443930:CDS 25.0%
! AATCTTCAGATTTATATCCA+AGG - tig0030602:37710-37729 Msa1443930:CDS 25.0%
! TTTATTAGAAACCAAATCCT+TGG + tig0030602:37730-37749 None:intergenic 25.0%
!!! TCTCACTTTTTTAACACATA+GGG + tig0030602:37981-38000 None:intergenic 25.0%
! TATGTGTTAAAAAAGTGAGA+GGG - tig0030602:37981-38000 Msa1443930:CDS 25.0%
!! TTCATTTTAGATAGTTGCAA+AGG + tig0030602:38117-38136 None:intergenic 25.0%
! AATTGTGGTATACTCATTAA+AGG - tig0030602:38148-38167 Msa1443930:CDS 25.0%
! ATTGTGGTATACTCATTAAA+GGG - tig0030602:38149-38168 Msa1443930:CDS 25.0%
! GAACCAAGTTAAAACAATAA+GGG + tig0030602:38646-38665 None:intergenic 25.0%
! AGAACCAAGTTAAAACAATA+AGG + tig0030602:38647-38666 None:intergenic 25.0%
!! TAAAGAAAAAGTTTGAGACA+CGG - tig0030602:38755-38774 Msa1443930:intron 25.0%
! TTTCGATTGAATCTAACAAT+TGG + tig0030602:38855-38874 None:intergenic 25.0%
! TTTGGTACTATAGAAAATCA+CGG + tig0030602:38889-38908 None:intergenic 25.0%
!!! CATTTTGTATAATGGACAAA+GGG + tig0030602:39028-39047 None:intergenic 25.0%
!!! TCATTTTGTATAATGGACAA+AGG + tig0030602:39029-39048 None:intergenic 25.0%
! TTGTCCATTATACAAAATGA+AGG - tig0030602:39029-39048 Msa1443930:intron 25.0%
! TGTCCATTATACAAAATGAA+GGG - tig0030602:39030-39049 Msa1443930:intron 25.0%
!! ACTATCATATTTTCTACAGT+AGG + tig0030602:39333-39352 None:intergenic 25.0%
! AGAATTAAAAGTGAACATAC+AGG + tig0030602:39731-39750 None:intergenic 25.0%
!!! ATTGCTAAATTCCTTTGTTT+TGG - tig0030602:39905-39924 Msa1443930:intron 25.0%
! GAAGAACTATTGTAAGAAAA+GGG + tig0030602:39967-39986 None:intergenic 25.0%
! TGAAGAACTATTGTAAGAAA+AGG + tig0030602:39968-39987 None:intergenic 25.0%
!! AATTACATTTTCATTGTTGG+TGG - tig0030602:39996-40015 Msa1443930:intron 25.0%
!! TTTTCACATTGTTGTGTATA+TGG - tig0030602:40099-40118 Msa1443930:intron 25.0%
!!! TTATTTTGTTGCATGCTTTA+TGG - tig0030602:40194-40213 Msa1443930:intron 25.0%
! TCCCTAAGAGAAATAATTAA+TGG - tig0030602:40617-40636 Msa1443930:intron 25.0%
!! CTCCATTAATTATTTCTCTT+AGG + tig0030602:40622-40641 None:intergenic 25.0%
! CTAAGAGAAATAATTAATGG+AGG - tig0030602:40620-40639 Msa1443930:intron 25.0%
!!! TTAGCTCTTGATTTTTGTTT+TGG + tig0030602:40833-40852 None:intergenic 25.0%
! AAGAAAGAAAAACTCTTGAT+CGG - tig0030602:41242-41261 Msa1443930:intron 25.0%
!!! TTTTTTTAACTTGCCTTTAG+TGG - tig0030602:41411-41430 Msa1443930:intron 25.0%
! AAAAGATTTAGATGTTCCTT+TGG + tig0030602:41886-41905 None:intergenic 25.0%
!! GAACATCTAAATCTTTTGAT+GGG - tig0030602:41889-41908 Msa1443930:intron 25.0%
!! AACATCTAAATCTTTTGATG+GGG - tig0030602:41890-41909 Msa1443930:intron 25.0%
! TTGGTTAAACGAATAACTTT+GGG + tig0030602:41961-41980 None:intergenic 25.0%
! ATTGGTTAAACGAATAACTT+TGG + tig0030602:41962-41981 None:intergenic 25.0%
!!! TCTTAGCGAATTATTTCTAA+TGG - tig0030602:42236-42255 Msa1443930:intron 25.0%
! AATAACTGCATATAAAGGTA+AGG + tig0030602:42499-42518 None:intergenic 25.0%
! TTACCTTTATATGCAGTTAT+TGG - tig0030602:42498-42517 Msa1443930:intron 25.0%
! GGAAAAAAACATGGTTTATT+AGG + tig0030602:42727-42746 None:intergenic 25.0%
! ACGTTAATCACCAAAATAAA+AGG + tig0030602:42759-42778 None:intergenic 25.0%
! TTTAATGGTGCATTTACTAA+GGG + tig0030602:42794-42813 None:intergenic 25.0%
!! TTTTAATGGTGCATTTACTA+AGG + tig0030602:42795-42814 None:intergenic 25.0%
! TTATACAGTATGTGATTATG+GGG + tig0030602:42856-42875 None:intergenic 25.0%
! GTTATACAGTATGTGATTAT+GGG + tig0030602:42857-42876 None:intergenic 25.0%
!!! AAATTGATCCATTTTTGTCT+CGG + tig0030602:42879-42898 None:intergenic 25.0%
!!! TCCCTGATTTCTTTTTAAAA+CGG - tig0030602:42937-42956 Msa1443930:intron 25.0%
! TTAAAATTTAGATATCGTCC+AGG - tig0030602:43030-43049 Msa1443930:intron 25.0%
! GAAACAAAAAAAAAACAACC+TGG + tig0030602:43051-43070 None:intergenic 25.0%
! ATTTACGTCTTTGTTGATAT+AGG + tig0030602:43094-43113 None:intergenic 25.0%
! TAACATCAAGCTTATTATAG+TGG - tig0030602:43255-43274 Msa1443930:intron 25.0%
! CAGAAGAATAAAACATAGTA+TGG + tig0030602:43325-43344 None:intergenic 25.0%
! GTTACAATCTTATAATCAAG+TGG + tig0030602:43358-43377 None:intergenic 25.0%
! CTTGATTATAAGATTGTAAC+TGG - tig0030602:43358-43377 Msa1443930:intron 25.0%
! ACAATAGAAGACAATTAACT+TGG - tig0030602:43505-43524 Msa1443930:CDS 25.0%
TCAAAAGATTACCTCTTCAA+CGG + tig0030602:36439-36458 None:intergenic 30.0%
CATGTTTGGATAAACAACTT+AGG - tig0030602:36617-36636 Msa1443930:intron 30.0%
TTATCACATGTTTGTTTCCA+TGG + tig0030602:37223-37242 None:intergenic 30.0%
AACATTGTTACCAAACACTA+AGG + tig0030602:37271-37290 None:intergenic 30.0%
AAAAATTCCTACACACTACA+TGG + tig0030602:37420-37439 None:intergenic 30.0%
! TTCTTTGGAAAAACAATTGC+TGG + tig0030602:37443-37462 None:intergenic 30.0%
AGCCATTATCCAATAATAGA+AGG - tig0030602:37574-37593 Msa1443930:CDS 30.0%
CAGATTTATATCCAAGGATT+TGG - tig0030602:37716-37735 Msa1443930:CDS 30.0%
GTCAATTATAGAACCAATCA+AGG - tig0030602:37930-37949 Msa1443930:CDS 30.0%
!!! CTCTCACTTTTTTAACACAT+AGG + tig0030602:37982-38001 None:intergenic 30.0%
CTATGTGTTAAAAAAGTGAG+AGG - tig0030602:37980-37999 Msa1443930:CDS 30.0%
TGACATTCATTCTCAATTCT+TGG - tig0030602:38197-38216 Msa1443930:intron 30.0%
GCAAAATCAATATTATCACG+AGG + tig0030602:38233-38252 None:intergenic 30.0%
AAGTGAGAACATAGAAGATT+CGG - tig0030602:38287-38306 Msa1443930:intron 30.0%
! TTTTCTATAGTACCAAACAC+AGG - tig0030602:38892-38911 Msa1443930:CDS 30.0%
GTCCATTATACAAAATGAAG+GGG - tig0030602:39031-39050 Msa1443930:intron 30.0%
! CAACACTGAACTTACATTTT+TGG + tig0030602:39225-39244 None:intergenic 30.0%
!! TTTTGTCTTAGCTTTTGTAG+CGG - tig0030602:39369-39388 Msa1443930:intron 30.0%
ATAGTCCAATTTAGAGATAG+AGG - tig0030602:39434-39453 Msa1443930:CDS 30.0%
TAGTCCAATTTAGAGATAGA+GGG - tig0030602:39435-39454 Msa1443930:CDS 30.0%
! GTTTAGCGTATAGATTTTCA+TGG + tig0030602:39464-39483 None:intergenic 30.0%
TAAATCTAAACCTCTCTTAC+TGG + tig0030602:39486-39505 None:intergenic 30.0%
CTATCACTGAATTTGATTCA+TGG - tig0030602:39512-39531 Msa1443930:intron 30.0%
GAGATTCTAGCAATTTAGTA+GGG + tig0030602:39621-39640 None:intergenic 30.0%
AGAGATTCTAGCAATTTAGT+AGG + tig0030602:39622-39641 None:intergenic 30.0%
! ATTGCTAGAATCTCTAGTTT+AGG - tig0030602:39627-39646 Msa1443930:intron 30.0%
GAATAAGGGAGAAAAAGAAT+AGG + tig0030602:39699-39718 None:intergenic 30.0%
! CTTTTTCTCCCTTATTCTTA+TGG - tig0030602:39702-39721 Msa1443930:intron 30.0%
TGATGGCAAGCTAAAATTAA+CGG - tig0030602:40285-40304 Msa1443930:intron 30.0%
!! TAGTAATGATTTGGTTTCCT+AGG - tig0030602:40354-40373 Msa1443930:intron 30.0%
! GTTAGTCTATAATGTAACCT+AGG + tig0030602:40374-40393 None:intergenic 30.0%
AACATGAACTCCAAGAATAA+GGG + tig0030602:40593-40612 None:intergenic 30.0%
TTGTAATTTAGCAATCTGCA+AGG + tig0030602:40700-40719 None:intergenic 30.0%
AGAAAGAAAAACTCTTGATC+GGG - tig0030602:41243-41262 Msa1443930:intron 30.0%
! TTTTCCTGTATTCTTCTTAC+AGG - tig0030602:41484-41503 Msa1443930:intron 30.0%
TTTCCTGTATTCTTCTTACA+GGG - tig0030602:41485-41504 Msa1443930:intron 30.0%
CACAGTTGAAAGTAATAATC+TGG - tig0030602:41567-41586 Msa1443930:intron 30.0%
! GGAACATCTAAATCTTTTGA+TGG - tig0030602:41888-41907 Msa1443930:intron 30.0%
! ACATCTAAATCTTTTGATGG+GGG - tig0030602:41891-41910 Msa1443930:intron 30.0%
TGGTTAAACGAATAACTTTG+GGG + tig0030602:41960-41979 None:intergenic 30.0%
AGAGAGAAACAGATGTTAAT+TGG - tig0030602:42000-42019 Msa1443930:intron 30.0%
GAAACAGATGTTAATTGGAA+AGG - tig0030602:42005-42024 Msa1443930:intron 30.0%
GAAAGGAAATTCAGATGATA+AGG - tig0030602:42022-42041 Msa1443930:intron 30.0%
AGGAGATCATATAAAATACC+TGG + tig0030602:42086-42105 None:intergenic 30.0%
! TAGCATCGTCTTTATCTTTT+AGG + tig0030602:42160-42179 None:intergenic 30.0%
ATGCCAATAACTGCATATAA+AGG + tig0030602:42504-42523 None:intergenic 30.0%
!! TAGTTTATATCCGTTGACTT+GGG + tig0030602:42653-42672 None:intergenic 30.0%
! ATAGTTTATATCCGTTGACT+TGG + tig0030602:42654-42673 None:intergenic 30.0%
!! AACTATTTCATTTTCAGGAC+AGG - tig0030602:42668-42687 Msa1443930:intron 30.0%
!! TTTTGGTGATTAACGTTGAA+TGG - tig0030602:42763-42782 Msa1443930:intron 30.0%
! TTTGGTGATTAACGTTGAAT+GGG - tig0030602:42764-42783 Msa1443930:intron 30.0%
! GGATTTGCATGCAATTTTAA+TGG + tig0030602:42809-42828 None:intergenic 30.0%
GGTTATACAGTATGTGATTA+TGG + tig0030602:42858-42877 None:intergenic 30.0%
GGAAGATAATTTGACCTAAA+AGG + tig0030602:42920-42939 None:intergenic 30.0%
!!! GCCGTTTTAAAAAGAAATCA+GGG + tig0030602:42941-42960 None:intergenic 30.0%
!!! TTTTAAAACGGCCTAGTTTT+TGG - tig0030602:42949-42968 Msa1443930:intron 30.0%
! AGTGTTGAGTAAACTTTCAT+AGG - tig0030602:43286-43305 Msa1443930:CDS 30.0%
GAGGATAAGAAAATGAATTC+AGG - tig0030602:43418-43437 Msa1443930:intron 30.0%
AAGAAAATGAATTCAGGAAC+CGG - tig0030602:43424-43443 Msa1443930:intron 30.0%
CACTCAAAAGAAAAACTGAA+AGG + tig0030602:43535-43554 None:intergenic 30.0%
! CTTTCAGTTTTTCTTTTGAG+TGG - tig0030602:43533-43552 Msa1443930:CDS 30.0%
AGATTCAGATCTAAGTGTAT+TGG - tig0030602:43663-43682 Msa1443930:five_prime_UTR 30.0%
AACTTATATGTTCTCCACAA+CGG + tig0030602:43757-43776 None:intergenic 30.0%
! AACTCTACATTTTCTTGACT+TGG + tig0030602:43784-43803 None:intergenic 30.0%
AAGATGCTTCTTCTTCTTCT+TGG + tig0030602:35982-36001 None:intergenic 35.0%
GCTGTTTACATAAGCTATCT+TGG - tig0030602:36754-36773 Msa1443930:intron 35.0%
!! TTGACTTGTTTGGACTGTTT+GGG + tig0030602:36845-36864 None:intergenic 35.0%
!! ATTGACTTGTTTGGACTGTT+TGG + tig0030602:36846-36865 None:intergenic 35.0%
!! TCAGTTTGGATTGACTTGTT+TGG + tig0030602:36855-36874 None:intergenic 35.0%
!! TTGTAGAGCCTCATTTTTCA+CGG + tig0030602:37151-37170 None:intergenic 35.0%
GCTCTACAAATTGTAGTTTC+AGG - tig0030602:37162-37181 Msa1443930:intron 35.0%
TTTGTTTCCATGGTAGGAAT+TGG + tig0030602:37213-37232 None:intergenic 35.0%
TCAATCCAAGTAGATCCTTA+AGG - tig0030602:37244-37263 Msa1443930:intron 35.0%
ATCAATGCAAACGCCAAAAA+GGG + tig0030602:37376-37395 None:intergenic 35.0%
TATCAATGCAAACGCCAAAA+AGG + tig0030602:37377-37396 None:intergenic 35.0%
CTACATGGCACAAATGTAAA+AGG + tig0030602:37405-37424 None:intergenic 35.0%
AATAACTGAGACGGTTTCTT+TGG + tig0030602:37458-37477 None:intergenic 35.0%
ATTAAAAATTGACCAGGCAG+TGG + tig0030602:37551-37570 None:intergenic 35.0%
!! GAAACTTCAATGGACTACAA+TGG + tig0030602:37631-37650 None:intergenic 35.0%
CATAACTTGAATCTATGTGG+TGG - tig0030602:37657-37676 Msa1443930:CDS 35.0%
AGTAGTGCATTTGACTCATT+AGG - tig0030602:37775-37794 Msa1443930:CDS 35.0%
GTAGTGCATTTGACTCATTA+GGG - tig0030602:37776-37795 Msa1443930:CDS 35.0%
TACTCTCTCTTGATGCTATT+TGG - tig0030602:37836-37855 Msa1443930:CDS 35.0%
CGGTAGTTTCATATTGTACT+CGG - tig0030602:38307-38326 Msa1443930:intron 35.0%
!! ATTGGGTTGAAATATGACAG+AGG + tig0030602:38377-38396 None:intergenic 35.0%
! GTAGTGAGCTTTTCTCTATT+GGG + tig0030602:38394-38413 None:intergenic 35.0%
! AGTAGTGAGCTTTTCTCTAT+TGG + tig0030602:38395-38414 None:intergenic 35.0%
ACTACTAGCATTAGAACACA+AGG - tig0030602:38409-38428 Msa1443930:CDS 35.0%
GGTGCATATCTATGGTTATA+GGG + tig0030602:38453-38472 None:intergenic 35.0%
TGGTGCATATCTATGGTTAT+AGG + tig0030602:38454-38473 None:intergenic 35.0%
!! TTACACAAGATGTTGTTTCC+AGG + tig0030602:38505-38524 None:intergenic 35.0%
!!! GTGCCCTTATTGTTTTAACT+TGG - tig0030602:38640-38659 Msa1443930:CDS 35.0%
! TCCAAAAAAAGCATGCATTG+TGG + tig0030602:38704-38723 None:intergenic 35.0%
GTTCAAGAAACTTGAGGTTT+GGG + tig0030602:38830-38849 None:intergenic 35.0%
CGATTGAATCTAACAATTGG+AGG + tig0030602:38852-38871 None:intergenic 35.0%
GTTAGATTCAATCGAAAGTG+TGG - tig0030602:38858-38877 Msa1443930:CDS 35.0%
ACTTCTACTTATCCTGTGTT+TGG + tig0030602:38907-38926 None:intergenic 35.0%
AGACAAATATCCTAGCTTAG+AGG - tig0030602:38956-38975 Msa1443930:CDS 35.0%
! CTCCCCTTCATTTTGTATAA+TGG + tig0030602:39036-39055 None:intergenic 35.0%
ACAAAATGAAGGGGAGATAA+AGG - tig0030602:39040-39059 Msa1443930:intron 35.0%
ATAAAGGAGATGCAAAGCAT+AGG - tig0030602:39056-39075 Msa1443930:intron 35.0%
CAAAGCATAGGATCTATGTA+GGG - tig0030602:39068-39087 Msa1443930:intron 35.0%
!! ATGTAGGGTTGATGAAATCA+AGG - tig0030602:39083-39102 Msa1443930:intron 35.0%
! GTGCAGTGGAATTTTCTTTT+AGG + tig0030602:39151-39170 None:intergenic 35.0%
GTTTCCCTCTATCTCTAAAT+TGG + tig0030602:39442-39461 None:intergenic 35.0%
ACAAGATGGAATCAACTACA+TGG + tig0030602:39564-39583 None:intergenic 35.0%
! TGTAGTTGATTCCATCTTGT+AGG - tig0030602:39564-39583 Msa1443930:intron 35.0%
TTGATTCCATCTTGTAGGAT+AGG - tig0030602:39569-39588 Msa1443930:intron 35.0%
TAAACTCCTATCCTACAAGA+TGG + tig0030602:39578-39597 None:intergenic 35.0%
CTTGTAGGATAGGAGTTTAA+TGG - tig0030602:39579-39598 Msa1443930:intron 35.0%
AAAAGAATAGGACAAGGACA+AGG + tig0030602:39687-39706 None:intergenic 35.0%
!!! TGTTGGTGGTGATTTTTTAG+TGG - tig0030602:40010-40029 Msa1443930:intron 35.0%
!!! GTTGGTGGTGATTTTTTAGT+GGG - tig0030602:40011-40030 Msa1443930:intron 35.0%
ATCAACCTTTGACAGTTCAT+CGG + tig0030602:40269-40288 None:intergenic 35.0%
TGATGAAAAGAAAGCAGCAA+TGG - tig0030602:40437-40456 Msa1443930:intron 35.0%
AGCAAGAATTGCTTCTATTG+GGG + tig0030602:40529-40548 None:intergenic 35.0%
GAGCAAGAATTGCTTCTATT+GGG + tig0030602:40530-40549 None:intergenic 35.0%
!! AAGAGGTATTCCCTTATTCT+TGG - tig0030602:40580-40599 Msa1443930:intron 35.0%
CAACATGAACTCCAAGAATA+AGG + tig0030602:40594-40613 None:intergenic 35.0%
AGCAATCTGCAAGGAATATA+TGG + tig0030602:40691-40710 None:intergenic 35.0%
! CTTCTTTGGATTTGGTAAGA+CGG + tig0030602:40743-40762 None:intergenic 35.0%
TCTTACCAAATCCAAAGAAG+CGG - tig0030602:40743-40762 Msa1443930:intron 35.0%
! ATTTAAGGTCCTAGTGTACT+GGG + tig0030602:40910-40929 None:intergenic 35.0%
! TATTTAAGGTCCTAGTGTAC+TGG + tig0030602:40911-40930 None:intergenic 35.0%
! TATTTTCTTCCTGAGAGAAG+TGG + tig0030602:40959-40978 None:intergenic 35.0%
ATGCAGTTAGAGATTATCAG+AGG - tig0030602:41084-41103 Msa1443930:intron 35.0%
AAGAAAAGCTCAACCACTAA+AGG + tig0030602:41427-41446 None:intergenic 35.0%
TTCCTGTATTCTTCTTACAG+GGG - tig0030602:41486-41505 Msa1443930:intron 35.0%
! ATTACGGCTTAAAGTACTAG+AGG - tig0030602:41668-41687 Msa1443930:intron 35.0%
TTCTCAAAACCAACCTCTAA+TGG - tig0030602:41789-41808 Msa1443930:intron 35.0%
TCTCAAAACCAACCTCTAAT+GGG - tig0030602:41790-41809 Msa1443930:intron 35.0%
GGTTACCATCCTTTCAATTA+AGG - tig0030602:41826-41845 Msa1443930:intron 35.0%
GATGACCTTAATTGAAAGGA+TGG + tig0030602:41834-41853 None:intergenic 35.0%
TCAATACTGAGCTAGAAGAT+GGG + tig0030602:41857-41876 None:intergenic 35.0%
TTCAATACTGAGCTAGAAGA+TGG + tig0030602:41858-41877 None:intergenic 35.0%
! TCAGTATTGAAGAATGCCAA+AGG - tig0030602:41867-41886 Msa1443930:intron 35.0%
AGGAATAAAATGCAGCTGAA+TGG - tig0030602:41930-41949 Msa1443930:intron 35.0%
! CTTTGGTTTCTTCAAGAGAT+TGG + tig0030602:41980-41999 None:intergenic 35.0%
! AACATCTGTTTCTCTCTCTT+TGG + tig0030602:41997-42016 None:intergenic 35.0%
AGATAAAGACGATGCTATTG+AGG - tig0030602:42163-42182 Msa1443930:intron 35.0%
TCGCTAAGATTAATCTGTGA+AGG + tig0030602:42225-42244 None:intergenic 35.0%
AGATACATTAACCAAAGCCA+TGG - tig0030602:42290-42309 Msa1443930:intron 35.0%
AAAGCGGTTCAGCAATATAA+AGG - tig0030602:42404-42423 Msa1443930:intron 35.0%
AAGCGGTTCAGCAATATAAA+GGG - tig0030602:42405-42424 Msa1443930:intron 35.0%
! AGAATCAGCTAATTTCTGGA+AGG - tig0030602:42451-42470 Msa1443930:intron 35.0%
AACTGCATATAAAGGTAAGG+AGG + tig0030602:42496-42515 None:intergenic 35.0%
!!! TGCTTGCTTTTTTCTGTAAC+TGG - tig0030602:42535-42554 Msa1443930:intron 35.0%
AACAGAATGGATGTATACGA+AGG + tig0030602:42581-42600 None:intergenic 35.0%
AGGTAAAACAAGGAACAGAA+TGG + tig0030602:42594-42613 None:intergenic 35.0%
ATTAAATCACAGCACATCTC+GGG + tig0030602:42697-42716 None:intergenic 35.0%
CATTAAATCACAGCACATCT+CGG + tig0030602:42698-42717 None:intergenic 35.0%
!!! ACCATGTTTTTTTCCCAATC+CGG - tig0030602:42732-42751 Msa1443930:intron 35.0%
AATCACCAAAATAAAAGGCC+CGG + tig0030602:42754-42773 None:intergenic 35.0%
CTGTATAACCGAGACAAAAA+TGG - tig0030602:42868-42887 Msa1443930:intron 35.0%
!!! GGCCGTTTTAAAAAGAAATC+AGG + tig0030602:42942-42961 None:intergenic 35.0%
ATTGGCAAATGCCAAAAACT+AGG + tig0030602:42963-42982 None:intergenic 35.0%
!!! CATTTGCCAATACTTTTTCC+TGG - tig0030602:42972-42991 Msa1443930:intron 35.0%
! AACATGCCAGGAAAAAGTAT+TGG + tig0030602:42981-43000 None:intergenic 35.0%
!!! AATACTTTTTCCTGGCATGT+TGG - tig0030602:42980-42999 Msa1443930:intron 35.0%
ACATAATCTGTGACGACTAA+TGG - tig0030602:43175-43194 Msa1443930:intron 35.0%
CAACATCAGAAACTTGTCTT+CGG + tig0030602:43388-43407 None:intergenic 35.0%
TTTGAGTGGTGTGTTTGTAT+AGG - tig0030602:43547-43566 Msa1443930:CDS 35.0%
AAACCGCAAAAAGCAGTAAA+GGG + tig0030602:43582-43601 None:intergenic 35.0%
TAAACCGCAAAAAGCAGTAA+AGG + tig0030602:43583-43602 None:intergenic 35.0%
!! ATAGTGTGATTGTGTTGGTT+CGG - tig0030602:43619-43638 Msa1443930:CDS 35.0%
ACTTATATGTTCTCCACAAC+GGG + tig0030602:43756-43775 None:intergenic 35.0%
ACGATAAAGTGAGTCAGTGA+AGG + tig0030602:35886-35905 None:intergenic 40.0%
! AGAGAGAGAGAGTGTGAAAA+TGG + tig0030602:36021-36040 None:intergenic 40.0%
ACCAGCATTTCAATCATCCA+TGG - tig0030602:36044-36063 Msa1443930:three_prime_UTR 40.0%
AGCATTTCAATCATCCATGG+CGG - tig0030602:36047-36066 Msa1443930:three_prime_UTR 40.0%
TCACGAAAAGCTCTTCTTCT+CGG - tig0030602:36130-36149 Msa1443930:three_prime_UTR 40.0%
GAGTTCATGAATCTGTTGCA+CGG - tig0030602:36192-36211 Msa1443930:three_prime_UTR 40.0%
CAGTGAAGGTTGAGCTTAAT+CGG - tig0030602:36223-36242 Msa1443930:three_prime_UTR 40.0%
AAGAGAAAAAGCCGTTGAAG+AGG - tig0030602:36425-36444 Msa1443930:three_prime_UTR 40.0%
!! GAAGTCTTTGGGATCATGTT+TGG - tig0030602:36603-36622 Msa1443930:intron 40.0%
ACAACTTAGGCATTATTCGG+TGG - tig0030602:36630-36649 Msa1443930:intron 40.0%
CACATGTTTGTTTCCATGGT+AGG + tig0030602:37219-37238 None:intergenic 40.0%
AAGGACCTTAAGGATCTACT+TGG + tig0030602:37252-37271 None:intergenic 40.0%
TCCTTAAGGTCCTTAGTGTT+TGG - tig0030602:37258-37277 Msa1443930:CDS 40.0%
ACCAAACACTAAGGACCTTA+AGG + tig0030602:37262-37281 None:intergenic 40.0%
ATTCACATGTCTAAGTGCAC+AGG - tig0030602:37331-37350 Msa1443930:CDS 40.0%
CTAAGTGCACAGGAATACAT+TGG - tig0030602:37341-37360 Msa1443930:CDS 40.0%
TCAATGCAAACGCCAAAAAG+GGG + tig0030602:37375-37394 None:intergenic 40.0%
ATTTGTGCCATGTAGTGTGT+AGG - tig0030602:37410-37429 Msa1443930:CDS 40.0%
ACCGTCTCAGTTATTAGATC+TGG - tig0030602:37463-37482 Msa1443930:intron 40.0%
GCCAGATCTAATAACTGAGA+CGG + tig0030602:37467-37486 None:intergenic 40.0%
TGTGGTGGTATAAACTGTCT+TGG - tig0030602:37672-37691 Msa1443930:CDS 40.0%
ACTAGCATTAGAACACAAGG+TGG - tig0030602:38412-38431 Msa1443930:CDS 40.0%
AACCATAGATATGCACCAAG+AGG - tig0030602:38456-38475 Msa1443930:CDS 40.0%
ACCATAGATATGCACCAAGA+GGG - tig0030602:38457-38476 Msa1443930:CDS 40.0%
CGTACAATACACCAAATGGT+GGG - tig0030602:38542-38561 Msa1443930:intron 40.0%
!!! GCCACAATGCATGCTTTTTT+TGG - tig0030602:38700-38719 Msa1443930:CDS 40.0%
! GATATAGTCTTAGAGAGTCG+AGG - tig0030602:38725-38744 Msa1443930:CDS 40.0%
CACGCTTAAGCAAAAGTCAT+GGG + tig0030602:38797-38816 None:intergenic 40.0%
ACACGCTTAAGCAAAAGTCA+TGG + tig0030602:38798-38817 None:intergenic 40.0%
! CTTTTGCTTAAGCGTGTGTT+TGG - tig0030602:38801-38820 Msa1443930:intron 40.0%
GGTTCAAGAAACTTGAGGTT+TGG + tig0030602:38831-38850 None:intergenic 40.0%
TTGGAGGTTCAAGAAACTTG+AGG + tig0030602:38836-38855 None:intergenic 40.0%
CCTAGCTTAGAGGTGAATAT+CGG - tig0030602:38966-38985 Msa1443930:CDS 40.0%
ATGTCACATCACAAGTCCTT+CGG - tig0030602:38994-39013 Msa1443930:CDS 40.0%
GCAAAGCATAGGATCTATGT+AGG - tig0030602:39067-39086 Msa1443930:intron 40.0%
TGAAATCAAGGAATGCCATG+CGG - tig0030602:39095-39114 Msa1443930:intron 40.0%
!! CAAGTTTTATAGCTGTGCAG+TGG + tig0030602:39165-39184 None:intergenic 40.0%
! TGTTATATGGCGTTGAACGT+TGG - tig0030602:39188-39207 Msa1443930:CDS 40.0%
! GTTATATGGCGTTGAACGTT+GGG - tig0030602:39189-39208 Msa1443930:CDS 40.0%
AAGCGATAGTCCTATGTATG+AGG - tig0030602:39248-39267 Msa1443930:CDS 40.0%
AGCGATAGTCCTATGTATGA+GGG - tig0030602:39249-39268 Msa1443930:CDS 40.0%
TTGTGTAACCCCTCATACAT+AGG + tig0030602:39261-39280 None:intergenic 40.0%
CAAAAGAGGGTTTCATTCAC+TGG + tig0030602:39398-39417 None:intergenic 40.0%
! CAGTGAATGAAACCCTCTTT+TGG - tig0030602:39396-39415 Msa1443930:CDS 40.0%
TCAGTCTACTCTCCAAAAGA+GGG + tig0030602:39411-39430 None:intergenic 40.0%
ATACGCTAAACCAGTAAGAG+AGG - tig0030602:39473-39492 Msa1443930:intron 40.0%
CACTGAATTTGATTCATGGC+AGG - tig0030602:39516-39535 Msa1443930:intron 40.0%
TGATTCATGGCAGGACATTA+CGG - tig0030602:39525-39544 Msa1443930:intron 40.0%
GGGAGAAAAAGAATAGGACA+AGG + tig0030602:39693-39712 None:intergenic 40.0%
ACAGGACGCCATAAGAATAA+GGG + tig0030602:39713-39732 None:intergenic 40.0%
TACAGGACGCCATAAGAATA+AGG + tig0030602:39714-39733 None:intergenic 40.0%
AAGAAAAGGGCAATAGAACG+TGG + tig0030602:39954-39973 None:intergenic 40.0%
GTTAACCGATGAACTGTCAA+AGG - tig0030602:40261-40280 Msa1443930:intron 40.0%
GATGAACTGTCAAAGGTTGA+TGG - tig0030602:40268-40287 Msa1443930:intron 40.0%
GCAAGAATTGCTTCTATTGG+GGG + tig0030602:40528-40547 None:intergenic 40.0%
GGAGCAAGAATTGCTTCTAT+TGG + tig0030602:40531-40550 None:intergenic 40.0%
AGAAGCAATTCTTGCTCCTT+TGG - tig0030602:40533-40552 Msa1443930:intron 40.0%
!!! AGTTTTAGTTCAGCCTCCAA+AGG + tig0030602:40552-40571 None:intergenic 40.0%
! ACTAAAACTTGCTCGACAAG+AGG - tig0030602:40563-40582 Msa1443930:intron 40.0%
!! TTCAATTAGTGCCGCTTCTT+TGG + tig0030602:40757-40776 None:intergenic 40.0%
GAAACAGATTGAGATTTGCC+AGG - tig0030602:40854-40873 Msa1443930:intron 40.0%
GGACAGAATGCATAGACTAA+AGG - tig0030602:40986-41005 Msa1443930:intron 40.0%
CAGAATGCATAGACTAAAGG+TGG - tig0030602:40989-41008 Msa1443930:intron 40.0%
AAAAGCTCACCCAAACTGTA+AGG - tig0030602:41021-41040 Msa1443930:intron 40.0%
AAAGCTCACCCAAACTGTAA+GGG - tig0030602:41022-41041 Msa1443930:intron 40.0%
!! TTCTAGCTCCCTTACAGTTT+GGG + tig0030602:41033-41052 None:intergenic 40.0%
AAAAACTCTTGATCGGGAGT+TGG - tig0030602:41249-41268 Msa1443930:intron 40.0%
TACTCTATTTGCGGTTACCT+TGG + tig0030602:41281-41300 None:intergenic 40.0%
AACCGCAAATAGAGTAGCTA+CGG - tig0030602:41285-41304 Msa1443930:intron 40.0%
AAGTGATGCCTGTCAAACAA+TGG - tig0030602:41341-41360 Msa1443930:intron 40.0%
TCTTCAAGCCATTGTTTGAC+AGG + tig0030602:41352-41371 None:intergenic 40.0%
ATAAGAAAGGAGGGGAAGAA+AGG + tig0030602:41455-41474 None:intergenic 40.0%
TCCTGTATTCTTCTTACAGG+GGG - tig0030602:41487-41506 Msa1443930:intron 40.0%
AAGTACTAGAGGAGAGTTTG+AGG - tig0030602:41679-41698 Msa1443930:intron 40.0%
AGTACTAGAGGAGAGTTTGA+GGG - tig0030602:41680-41699 Msa1443930:intron 40.0%
AGTTTGAGGGGGAATTCTAA+TGG - tig0030602:41693-41712 Msa1443930:intron 40.0%
GAAGTGTAAGCAATTCTCGT+CGG - tig0030602:41742-41761 Msa1443930:intron 40.0%
CTTAGGCAAAAACCCATTAG+AGG + tig0030602:41805-41824 None:intergenic 40.0%
!!! CTAATGGGTTTTTGCCTAAG+CGG - tig0030602:41805-41824 Msa1443930:intron 40.0%
TGGGGATGACCTTAATTGAA+AGG + tig0030602:41838-41857 None:intergenic 40.0%
CAATACTGAGCTAGAAGATG+GGG + tig0030602:41856-41875 None:intergenic 40.0%
TATCCTCTGTATCCACTGTT+GGG + tig0030602:42058-42077 None:intergenic 40.0%
ATATGATCTCCTGCAGAAAG+AGG - tig0030602:42094-42113 Msa1443930:intron 40.0%
CTGTCAGATGTTAGCAAAGA+AGG - tig0030602:42266-42285 Msa1443930:intron 40.0%
TTGAGGCAAAGAAGATGAGA+AGG - tig0030602:42316-42335 Msa1443930:intron 40.0%
TGAGGCAAAGAAGATGAGAA+GGG - tig0030602:42317-42336 Msa1443930:intron 40.0%
AACAAGAGAACAGAGCAAAG+CGG - tig0030602:42388-42407 Msa1443930:intron 40.0%
! GATTCTGAGCACTGTTTACA+GGG + tig0030602:42437-42456 None:intergenic 40.0%
! TGATTCTGAGCACTGTTTAC+AGG + tig0030602:42438-42457 None:intergenic 40.0%
GCTCAGAATCAGCTAATTTC+TGG - tig0030602:42447-42466 Msa1443930:intron 40.0%
!!! TTTTTTCTGTAACTGGTCCG+TGG - tig0030602:42542-42561 Msa1443930:intron 40.0%
TGAACGTAGCAGGTAAAACA+AGG + tig0030602:42604-42623 None:intergenic 40.0%
! TTTTACCTGCTACGTTCAAC+TGG - tig0030602:42606-42625 Msa1443930:intron 40.0%
TTTACCTGCTACGTTCAACT+GGG - tig0030602:42607-42626 Msa1443930:intron 40.0%
TTCAACTGGGTGTTTCTCAA+GGG - tig0030602:42620-42639 Msa1443930:intron 40.0%
TTAAATCACAGCACATCTCG+GGG + tig0030602:42696-42715 None:intergenic 40.0%
!!! CCATGTTTTTTTCCCAATCC+GGG - tig0030602:42733-42752 Msa1443930:intron 40.0%
CAAAATAAAAGGCCCGGATT+GGG + tig0030602:42748-42767 None:intergenic 40.0%
! ATCGCTATGTGAGTCCTTTT+AGG - tig0030602:42903-42922 Msa1443930:intron 40.0%
TGTGCGGGAAATCAGAAAAA+TGG + tig0030602:43158-43177 None:intergenic 40.0%
TAGTCGTCACAGATTATGTG+CGG + tig0030602:43174-43193 None:intergenic 40.0%
AAGCTTATTATAGTGGCGCT+TGG - tig0030602:43262-43281 Msa1443930:intron 40.0%
CGAAGACAAGTTTCTGATGT+TGG - tig0030602:43386-43405 Msa1443930:intron 40.0%
CAAGTTTCTGATGTTGGACA+TGG - tig0030602:43392-43411 Msa1443930:intron 40.0%
!!! TCTCCCTTTACTGCTTTTTG+CGG - tig0030602:43576-43595 Msa1443930:CDS 40.0%
! GAGAGAGAGTGTGAAAATGG+TGG + tig0030602:36018-36037 None:intergenic 45.0%
GCCATGGATGATTGAAATGC+TGG + tig0030602:36048-36067 None:intergenic 45.0%
! AGAGCTTTTCGTGAACGATC+CGG + tig0030602:36124-36143 None:intergenic 45.0%
AACTCGTCAGCATCCATACT+CGG + tig0030602:36177-36196 None:intergenic 45.0%
CATGAATCTGTTGCACGGTT+CGG - tig0030602:36197-36216 Msa1443930:three_prime_UTR 45.0%
CGATTAAGCTCAACCTTCAC+TGG + tig0030602:36225-36244 None:intergenic 45.0%
! TTTTCACGGCAAAGAGCTAG+TGG + tig0030602:37137-37156 None:intergenic 45.0%
GCTCTTTGCCGTGAAAAATG+AGG - tig0030602:37140-37159 Msa1443930:intron 45.0%
TGTCTAGCCAATTCCTACCA+TGG - tig0030602:37203-37222 Msa1443930:intron 45.0%
! TTGGAGAAGAAGCCCCTTTT+TGG - tig0030602:37360-37379 Msa1443930:CDS 45.0%
! TCCCTCTTGGTGCATATCTA+TGG + tig0030602:38461-38480 None:intergenic 45.0%
ATAGATATGCACCAAGAGGG+AGG - tig0030602:38460-38479 Msa1443930:intron 45.0%
TAGATATGCACCAAGAGGGA+GGG - tig0030602:38461-38480 Msa1443930:intron 45.0%
TGTTTCCAGGACTTGAACCA+AGG + tig0030602:38492-38511 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - tig0030602:38538-38557 Msa1443930:intron 45.0%
GCGTACAATACACCAAATGG+TGG - tig0030602:38541-38560 Msa1443930:intron 45.0%
GATCCCTGGTGCATATCTAT+GGG + tig0030602:38614-38633 None:intergenic 45.0%
TGATCCCTGGTGCATATCTA+TGG + tig0030602:38615-38634 None:intergenic 45.0%
! AAGGGCACAAATTTGATCCC+TGG + tig0030602:38628-38647 None:intergenic 45.0%
CCGATATTCACCTCTAAGCT+AGG + tig0030602:38969-38988 None:intergenic 45.0%
GAAATCAAGGAATGCCATGC+GGG - tig0030602:39096-39115 Msa1443930:intron 45.0%
! AATGCCATGCGGGTTATTTG+TGG - tig0030602:39106-39125 Msa1443930:intron 45.0%
TCTACCACAAATAACCCGCA+TGG + tig0030602:39113-39132 None:intergenic 45.0%
GCGATAGTCCTATGTATGAG+GGG - tig0030602:39250-39269 Msa1443930:CDS 45.0%
CTCAGTCTACTCTCCAAAAG+AGG + tig0030602:39412-39431 None:intergenic 45.0%
GGGCAATAGAACGTGGATAA+AGG + tig0030602:39947-39966 None:intergenic 45.0%
TGCTGAAGCTACTCTTCGAA+GGG - tig0030602:40473-40492 Msa1443930:intron 45.0%
AGCAATTCTTGCTCCTTTGG+AGG - tig0030602:40536-40555 Msa1443930:intron 45.0%
! GGATTTGGTAAGACGGTCTA+AGG + tig0030602:40736-40755 None:intergenic 45.0%
!! TAGTGCCGCTTCTTTGGATT+TGG + tig0030602:40751-40770 None:intergenic 45.0%
TGAAGCCGAAAAGACTGTTC+AGG - tig0030602:40773-40792 Msa1443930:intron 45.0%
! GGCAACCTGAACAGTCTTTT+CGG + tig0030602:40781-40800 None:intergenic 45.0%
!! AAAGACTGTTCAGGTTGCCT+TGG - tig0030602:40782-40801 Msa1443930:intron 45.0%
!! TGTTCAGGTTGCCTTGGTTA+AGG - tig0030602:40788-40807 Msa1443930:intron 45.0%
!!! GTTTTGGAGATCATCCACCA+TGG + tig0030602:40817-40836 None:intergenic 45.0%
TTTCCCTTTCCCAGTACACT+AGG - tig0030602:40898-40917 Msa1443930:intron 45.0%
GTTTCATCACCACTTCTCTC+AGG - tig0030602:40947-40966 Msa1443930:intron 45.0%
!! CTTCTAGCTCCCTTACAGTT+TGG + tig0030602:41034-41053 None:intergenic 45.0%
AACTGTAAGGGAGCTAGAAG+AGG - tig0030602:41034-41053 Msa1443930:intron 45.0%
TATTTGCGGTTACCTTGGCA+CGG + tig0030602:41276-41295 None:intergenic 45.0%
CACCGTAGCTACTCTATTTG+CGG + tig0030602:41290-41309 None:intergenic 45.0%
CTACGGTGGTTGCAAATGAA+TGG - tig0030602:41302-41321 Msa1443930:intron 45.0%
!! TGAAGAACGTCGATTCTTGC+AGG - tig0030602:41366-41385 Msa1443930:intron 45.0%
TCCCCCTGTAAGAAGAATAC+AGG + tig0030602:41491-41510 None:intergenic 45.0%
GTACTAGAGGAGAGTTTGAG+GGG - tig0030602:41681-41700 Msa1443930:intron 45.0%
TACTAGAGGAGAGTTTGAGG+GGG - tig0030602:41682-41701 Msa1443930:intron 45.0%
TGCTTACACTTCTTCCCTCA+GGG + tig0030602:41734-41753 None:intergenic 45.0%
TTGCTTACACTTCTTCCCTC+AGG + tig0030602:41735-41754 None:intergenic 45.0%
AATTCTCGTCGGCAATCTCT+AGG - tig0030602:41753-41772 Msa1443930:intron 45.0%
GGCAAAAACCCATTAGAGGT+TGG + tig0030602:41801-41820 None:intergenic 45.0%
TGAAAGGATGGTAACCGCTT+AGG + tig0030602:41822-41841 None:intergenic 45.0%
!! AATCTTTTGATGGGGGCACA+AGG - tig0030602:41898-41917 Msa1443930:intron 45.0%
CTATCCTCTGTATCCACTGT+TGG + tig0030602:42059-42078 None:intergenic 45.0%
GATACAGAGGATAGTGTTCC+AGG - tig0030602:42065-42084 Msa1443930:intron 45.0%
AGAAAGAGGTCATGACCTTG+AGG - tig0030602:42108-42127 Msa1443930:intron 45.0%
CTCATTACCAGCTTTCCTCA+AGG + tig0030602:42126-42145 None:intergenic 45.0%
AACCAAAGCCATGGAAGTTG+AGG - tig0030602:42299-42318 Msa1443930:intron 45.0%
CTTCTTTGCCTCAACTTCCA+TGG + tig0030602:42310-42329 None:intergenic 45.0%
GGAAGTAGCCAACATGGAAA+AGG - tig0030602:42338-42357 Msa1443930:intron 45.0%
AGTAGCCAACATGGAAAAGG+AGG - tig0030602:42341-42360 Msa1443930:intron 45.0%
! AGCTACCTCCTTTTCCATGT+TGG + tig0030602:42349-42368 None:intergenic 45.0%
TTCAGCAATATAAAGGGCCC+TGG - tig0030602:42411-42430 Msa1443930:intron 45.0%
AAGGTTAAAACCTCCAGCCA+CGG + tig0030602:42562-42581 None:intergenic 45.0%
GTTCAACTGGGTGTTTCTCA+AGG - tig0030602:42619-42638 Msa1443930:intron 45.0%
! CCCGGATTGGGAAAAAAACA+TGG + tig0030602:42736-42755 None:intergenic 45.0%
CCAAAATAAAAGGCCCGGAT+TGG + tig0030602:42749-42768 None:intergenic 45.0%
!! CCAATCCGGGCCTTTTATTT+TGG - tig0030602:42746-42765 Msa1443930:intron 45.0%
CATGCAAATCCACTTGTCCT+TGG - tig0030602:42818-42837 Msa1443930:intron 45.0%
AGTAGATTGACCAACATGCC+AGG + tig0030602:42993-43012 None:intergenic 45.0%
AGTCGTCACAGATTATGTGC+GGG + tig0030602:43173-43192 None:intergenic 45.0%
! CTGATGTTGGACATGGATTG+AGG - tig0030602:43399-43418 Msa1443930:intron 45.0%
AGTCTAGGTCAGATGCATAC+CGG + tig0030602:43446-43465 None:intergenic 45.0%
TATCCTCTGCGTAGAGAGAT+CGG - tig0030602:43470-43489 Msa1443930:CDS 45.0%
CGCAGATAGTGTGATTGTGT+TGG - tig0030602:43614-43633 Msa1443930:CDS 45.0%
!! AAAAAAAATTATATTTCTTT+AGG - tig0030602:41219-41238 Msa1443930:intron 5.0%
!! AAAATTTATATAAATAAGAA+AGG + tig0030602:41468-41487 None:intergenic 5.0%
!! TCATCCATGGCGGATGTTTC+CGG - tig0030602:36057-36076 Msa1443930:three_prime_UTR 50.0%
AACGATCCGGGAACTGAAAG+CGG + tig0030602:36111-36130 None:intergenic 50.0%
! GAGCTTTTCGTGAACGATCC+GGG + tig0030602:36123-36142 None:intergenic 50.0%
CGGCTTGAGAATGAAGTTCG+AGG - tig0030602:36243-36262 Msa1443930:three_prime_UTR 50.0%
GGACTGTTTGGGAGAACTTG+TGG + tig0030602:36834-36853 None:intergenic 50.0%
! TGTGTTGCGTTGACCATGTG+TGG - tig0030602:37520-37539 Msa1443930:intron 50.0%
!! GGCAGTGGATTTTCCACACA+TGG + tig0030602:37536-37555 None:intergenic 50.0%
TGTGTGGAAAATCCACTGCC+TGG - tig0030602:37536-37555 Msa1443930:CDS 50.0%
AGATATGCACCAAGAGGGAG+GGG - tig0030602:38462-38481 Msa1443930:intron 50.0%
CTGCCCATAGATATGCACCA+GGG - tig0030602:38608-38627 Msa1443930:CDS 50.0%
CTGCTGAAGCTACTCTTCGA+AGG - tig0030602:40472-40491 Msa1443930:intron 50.0%
! AAGGGTACATGCTGCTCAGA+AGG - tig0030602:40491-40510 Msa1443930:intron 50.0%
TTGGAGATCATCCACCATGG+AGG + tig0030602:40814-40833 None:intergenic 50.0%
GGTCCTAGTGTACTGGGAAA+GGG + tig0030602:40904-40923 None:intergenic 50.0%
AGGTCCTAGTGTACTGGGAA+AGG + tig0030602:40905-40924 None:intergenic 50.0%
GCATAGACTAAAGGTGGCAG+AGG - tig0030602:40995-41014 Msa1443930:intron 50.0%
ATTTGCGGTTACCTTGGCAC+GGG + tig0030602:41275-41294 None:intergenic 50.0%
CGCAAATAGAGTAGCTACGG+TGG - tig0030602:41288-41307 Msa1443930:intron 50.0%
AAAGGAGGGGAAGAAAGGAG+GGG + tig0030602:41450-41469 None:intergenic 50.0%
GAAAGGAGGGGAAGAAAGGA+GGG + tig0030602:41451-41470 None:intergenic 50.0%
AGAAAGGAGGGGAAGAAAGG+AGG + tig0030602:41452-41471 None:intergenic 50.0%
GCTTACACTTCTTCCCTCAG+GGG + tig0030602:41733-41752 None:intergenic 50.0%
GGCAAATGACTTCCCAACAG+TGG - tig0030602:42043-42062 Msa1443930:intron 50.0%
CTTCCCAACAGTGGATACAG+AGG - tig0030602:42052-42071 Msa1443930:intron 50.0%
AGGTCATGACCTCTTTCTGC+AGG + tig0030602:42106-42125 None:intergenic 50.0%
GTCATGACCTTGAGGAAAGC+TGG - tig0030602:42116-42135 Msa1443930:intron 50.0%
TGCCTCAACTTCCATGGCTT+TGG + tig0030602:42304-42323 None:intergenic 50.0%
GAGAAGGGAAGTAGCCAACA+TGG - tig0030602:42332-42351 Msa1443930:intron 50.0%
AACACCCAGTTGAACGTAGC+AGG + tig0030602:42614-42633 None:intergenic 50.0%
GGGATTTCTGCCCAAGTCAA+CGG - tig0030602:42640-42659 Msa1443930:intron 50.0%
GTGAACTGACCAAGGACAAG+TGG + tig0030602:42830-42849 None:intergenic 50.0%
! TTCCACAGAAGTGTGACACG+TGG - tig0030602:43210-43229 Msa1443930:intron 50.0%
CGCAGAGGATACAACAGTCT+AGG + tig0030602:43461-43480 None:intergenic 50.0%
CGTAGAGAGATCGGCTAAGA+AGG - tig0030602:43479-43498 Msa1443930:CDS 50.0%
! AGTGAAGCATTCACCCGTTG+TGG - tig0030602:43740-43759 Msa1443930:five_prime_UTR 50.0%
AGCTCTTCTTCTCGGAGACG+CGG - tig0030602:36138-36157 Msa1443930:three_prime_UTR 55.0%
ATCCATACTCGGTTGCCTCG+CGG + tig0030602:36166-36185 None:intergenic 55.0%
! GCAAAGAGCTAGTGGACGTG+CGG + tig0030602:37129-37148 None:intergenic 55.0%
GATATGCACCAAGAGGGAGG+GGG - tig0030602:38463-38482 Msa1443930:intron 55.0%
ATATGCACCAAGAGGGAGGG+GGG - tig0030602:38464-38483 Msa1443930:intron 55.0%
CCAAAGCTCCAGCATACGCA+GGG + tig0030602:38581-38600 None:intergenic 55.0%
! TATGCTGGAGCTTTGGCACC+AGG - tig0030602:38585-38604 Msa1443930:intron 55.0%
GTGCATATCTATGGGCAGCC+TGG + tig0030602:38606-38625 None:intergenic 55.0%
GCTGCCCATAGATATGCACC+AGG - tig0030602:38607-38626 Msa1443930:CDS 55.0%
! TGAGACACGGAGACTAGCTC+TGG - tig0030602:38768-38787 Msa1443930:intron 55.0%
!! ACAAAGGGCACTCAAGCCGA+AGG + tig0030602:39013-39032 None:intergenic 55.0%
TGCCTTGGTTAAGGCCTCCA+TGG - tig0030602:40797-40816 Msa1443930:intron 55.0%
CACCATGGAGGCCTTAACCA+AGG + tig0030602:40802-40821 None:intergenic 55.0%
CTTGGTTAAGGCCTCCATGG+TGG - tig0030602:40800-40819 Msa1443930:intron 55.0%
CTAGAAGAGGCTGTCCTTGC+AGG - tig0030602:41047-41066 Msa1443930:intron 55.0%
TCTCGTCGGCAATCTCTAGG+TGG - tig0030602:41756-41775 Msa1443930:intron 55.0%
! GAGCACTGTTTACAGGGCCA+GGG + tig0030602:42431-42450 None:intergenic 55.0%
! TGAGCACTGTTTACAGGGCC+AGG + tig0030602:42432-42451 None:intergenic 55.0%
TTCTGTAACTGGTCCGTGGC+TGG - tig0030602:42546-42565 Msa1443930:intron 55.0%
! TGGGGAGTGTGAACTGACCA+AGG + tig0030602:42838-42857 None:intergenic 55.0%
CTCCACGTGTCACACTTCTG+TGG + tig0030602:43215-43234 None:intergenic 55.0%
! CACAGAAGTGTGACACGTGG+AGG - tig0030602:43213-43232 Msa1443930:intron 55.0%
TAGCCGATCTCTCTACGCAG+AGG + tig0030602:43476-43495 None:intergenic 55.0%
!! ATGGCGGATGTTTCCGGCGA+CGG - tig0030602:36063-36082 Msa1443930:three_prime_UTR 60.0%
TTCCGGCGACGGAGCTGAAA+TGG - tig0030602:36074-36093 Msa1443930:three_prime_UTR 60.0%
! GCACGGTTCGGATCCAGTGA+AGG - tig0030602:36209-36228 Msa1443930:three_prime_UTR 60.0%
TATGCACCAAGAGGGAGGGG+GGG - tig0030602:38465-38484 Msa1443930:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - tig0030602:38554-38573 Msa1443930:intron 60.0%
CCCTGCGTATGCTGGAGCTT+TGG - tig0030602:38578-38597 Msa1443930:intron 60.0%
GCCAAAGCTCCAGCATACGC+AGG + tig0030602:38582-38601 None:intergenic 60.0%
GAAGAGGCTGTCCTTGCAGG+TGG - tig0030602:41050-41069 Msa1443930:intron 60.0%
TTGCAGCAGCACCACCTGCA+AGG + tig0030602:41064-41083 None:intergenic 60.0%
AGTAGTCGCAGCACCCCTGA+GGG - tig0030602:41717-41736 Msa1443930:intron 60.0%
! TGATGGGGGCACAAGGTCAC+TGG - tig0030602:41905-41924 Msa1443930:intron 60.0%
GGAGGTAGCTGCTATGCGTG+TGG - tig0030602:42359-42378 Msa1443930:intron 60.0%
TGTAACTGGTCCGTGGCTGG+AGG - tig0030602:42549-42568 Msa1443930:intron 60.0%
GTCGCCGGAAACATCCGCCA+TGG + tig0030602:36064-36083 None:intergenic 65.0%
CGCCATTTCAGCTCCGTCGC+CGG + tig0030602:36079-36098 None:intergenic 65.0%
CGGAGCTGAAATGGCGACGC+CGG - tig0030602:36083-36102 Msa1443930:three_prime_UTR 65.0%
CTCCGCGAGGCAACCGAGTA+TGG - tig0030602:36161-36180 Msa1443930:three_prime_UTR 65.0%
ATGCACCAAGAGGGAGGGGG+GGG - tig0030602:38466-38485 Msa1443930:intron 65.0%
GGGGGCCTTGGTTCAAGTCC+TGG - tig0030602:38484-38503 Msa1443930:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + tig0030602:38556-38575 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + tig0030602:38569-38588 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + tig0030602:38570-38589 None:intergenic 65.0%
AGCATACGCAGGGTCCGGGA+AGG + tig0030602:38571-38590 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+TGG - tig0030602:38570-38589 Msa1443930:intron 65.0%
CTCCAGCATACGCAGGGTCC+GGG + tig0030602:38575-38594 None:intergenic 65.0%
GCTCCAGCATACGCAGGGTC+CGG + tig0030602:38576-38595 None:intergenic 65.0%
CAGTAGTCGCAGCACCCCTG+AGG - tig0030602:41716-41735 Msa1443930:intron 65.0%
GGGGCACAAGGTCACTGGAG+AGG - tig0030602:41910-41929 Msa1443930:intron 65.0%
CCGGGAACTGAAAGCGGCGC+CGG + tig0030602:36105-36124 None:intergenic 70.0%
! CCGGCGCCGCTTTCAGTTCC+CGG - tig0030602:36102-36121 Msa1443930:three_prime_UTR 70.0%
TCGGGAGTTGGCCCGTGCCA+AGG - tig0030602:41261-41280 Msa1443930:intron 70.0%
CAAGGCCCCCCCCTCCCTCT+TGG + tig0030602:38474-38493 None:intergenic 75.0%
CAAGAGGGAGGGGGGGGCCT+TGG - tig0030602:38472-38491 Msa1443930:intron 75.0%
! CTCGGAGACGCGGCTCCGCG+AGG - tig0030602:36148-36167 Msa1443930:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0030602 gene 35879 43839 35879 ID=Msa1443930;Name=Msa1443930
tig0030602 mRNA 35879 43839 35879 ID=Msa1443930-mRNA-1;Parent=Msa1443930;Name=Msa1443930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=184|1|1|1|0.9|0.90|11|582|612
tig0030602 exon 35879 36500 35879 ID=Msa1443930-mRNA-1:exon:14190;Parent=Msa1443930-mRNA-1
tig0030602 exon 37246 37445 37246 ID=Msa1443930-mRNA-1:exon:14189;Parent=Msa1443930-mRNA-1
tig0030602 exon 37534 38061 37534 ID=Msa1443930-mRNA-1:exon:14188;Parent=Msa1443930-mRNA-1
tig0030602 exon 38141 38212 38141 ID=Msa1443930-mRNA-1:exon:14187;Parent=Msa1443930-mRNA-1
tig0030602 exon 38331 38477 38331 ID=Msa1443930-mRNA-1:exon:14186;Parent=Msa1443930-mRNA-1
tig0030602 exon 38594 38749 38594 ID=Msa1443930-mRNA-1:exon:14185;Parent=Msa1443930-mRNA-1
tig0030602 exon 38843 39013 38843 ID=Msa1443930-mRNA-1:exon:14184;Parent=Msa1443930-mRNA-1
tig0030602 exon 39134 39304 39134 ID=Msa1443930-mRNA-1:exon:14183;Parent=Msa1443930-mRNA-1
tig0030602 exon 39391 39456 39391 ID=Msa1443930-mRNA-1:exon:14182;Parent=Msa1443930-mRNA-1
tig0030602 exon 43272 43357 43272 ID=Msa1443930-mRNA-1:exon:14181;Parent=Msa1443930-mRNA-1
tig0030602 exon 43454 43839 43454 ID=Msa1443930-mRNA-1:exon:14180;Parent=Msa1443930-mRNA-1
tig0030602 five_prime_UTR 43656 43839 43656 ID=Msa1443930-mRNA-1:five_prime_utr;Parent=Msa1443930-mRNA-1
tig0030602 CDS 43454 43655 43454 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 43272 43357 43272 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 39391 39456 39391 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 39134 39304 39134 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 38843 39013 38843 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 38594 38749 38594 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 38331 38477 38331 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 38141 38212 38141 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 37534 38061 37534 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 37246 37445 37246 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 CDS 36461 36500 36461 ID=Msa1443930-mRNA-1:cds;Parent=Msa1443930-mRNA-1
tig0030602 three_prime_UTR 35879 36460 35879 ID=Msa1443930-mRNA-1:three_prime_utr;Parent=Msa1443930-mRNA-1
Gene Sequence

>Msa1443930

ATGGCGGATGTTTCCGGCGACGGAGCTGAAATGGCGACGCCGGCGCCGCTTTCAGTTCCCGGATCGTTCACGAAAAGCTCTTCTTCTCGGAGACGCGGCTCCGCGAGGCAACCGAGTATGGATGCTGACGAGTTCATGAATCTGTTGCACGGTTCGGATCCAGTGAAGGTTGAGCTTAATCGGCTTGAGAATGAAGTTCGAGATAAGGATAGAGAATTATCAGAAGCACAAGCTGAGATCAAAGCGTTGAGACACTCTGAACGATTAAGAGAAAAAGCCGTTGAAGAGTTAACCGATGAACTGTCAAAGGTTGATGGCAAGCTAAAATTAACGGAATCTCTTCTAGAAAGCAAAAATCTTGAAATAAAGAAAATCAATGATGAAAAGAAAGCAGCAATGGCAGCTCAGTTTGCTGCTGAAGCTACTCTTCGAAGGGTACATGCTGCTCAGAAGGATGATGACATGCCCCCAATAGAAGCAATTCTTGCTCCTTTGGAGGCTGAACTAAAACTTGCTCGACAAGAGATTGCTAAATTACAAGATGATAACAAAGCCTTAGACCGTCTTACCAAATCCAAAGAAGCGGCACTAATTGAAGCCGAAAAGACTGTTCAGGTTGCCTTGGTTAAGGCCTCCATGGTGGATGATCTCCAAAACAAAAATCAAGAGCTAATGAAACAGATTGAGATTTGCCAGGAAGAAAATAAAATATTGGACAGAATGCATAGACTAAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTAAGGGAGCTAGAAGAGGCTGTCCTTGCAGGTGGTGCTGCTGCAAATGCAGTTAGAGATTATCAGAGGAAAGTTCAAGAAATGAATGAAGAAAGAAAAACTCTTGATCGGGAGTTGGCCCGTGCCAAGGTAACCGCAAATAGAGTAGCTACGGTGGTTGCAAATGAATGGAAAGATTCAAATGATAAAGTGATGCCTGTCAAACAATGGCTTGAAGAACGTCGATTCTTGCAGGGGGAAATGCAGCAACTTCGTGACAAACTTGCTATAGTTGAGCGCGCAGCAAAGTCTGAAGCACAGTTGAAAGAAAAATATCAATTACGGCTTAAAGTACTAGAGGAGAGTTTGAGGGGGAATTCTAATGGCAGTAGTCGCAGCACCCCTGAGGGAAGAAGTGTAAGCAATTCTCGTCGGCAATCTCTAGGTGGAGCTGATAATTTCTCAAAACCAACCTCTAATGGGTTTTTGCCTAAGCGGTTACCATCCTTTCAATTAAGGTCATCCCCATCTTCTAGCTCAGTATTGAAGAATGCCAAAGGAACATCTAAATCTTTTGATGGGGGCACAAGGTCACTGGAGAGGAATAAAATGCAGCTGAATGGAGCACCCCAAAGTTATTCGTTTAACCAATCTCTTGAAGAAACCAAAGAGAGAGAAACAGATGTTAATTGGAAAGGAAATTCAGATGATAAGGCAAATGACTTCCCAACAGTGGATACAGAGGATAGTGTTCCAGGTATTTTATATGATCTCCTGCAGAAAGAGGTCATGACCTTGAGGAAAGCTGGTAATGAGAAAGATCAAAGCCTAAAAGATAAAGACGATGCTATTGAGATGTTAGCAAAGAAGGTAGATACATTAACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCCAACATGGAAAAGGAGGTAGCTGCTATGCGTGTGGAGAAAGAACAAGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGGCCCTGTAAACAGTGCTCAGAATCAGCTAATTTCTGGAAGAAGTGTGACACGTGGAGGATTAACACGCAGCACCCAATAA

Protein sequence

>Msa1443930

MADVSGDGAEMATPAPLSVPGSFTKSSSSRRRGSARQPSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRHSERLREKAVEELTDELSKVDGKLKLTESLLESKNLEIKKINDEKKAAMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIEAEKTVQVALVKASMVDDLQNKNQELMKQIEICQEENKILDRMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERAAKSEAQLKEKYQLRLKVLEESLRGNSNGSSRSTPEGRSVSNSRRQSLGGADNFSKPTSNGFLPKRLPSFQLRSSPSSSSVLKNAKGTSKSFDGGTRSLERNKMQLNGAPQSYSFNQSLEETKERETDVNWKGNSDDKANDFPTVDTEDSVPGILYDLLQKEVMTLRKAGNEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVANMEKEVAAMRVEKEQENRAKRFSNIKGPGPVNSAQNQLISGRSVTRGGLTRSTQ*