Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001290 | XP_003620871.1 | 88.462 | 260 | 8 | 1 | 1 | 260 | 1 | 238 | 1.92e-150 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001290 | sp|Q9C5D7|CAMT3_ARATH | 56.735 | 245 | 84 | 1 | 15 | 259 | 9 | 231 | 3.26e-97 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001290 | G7KJ71 | 88.462 | 260 | 8 | 1 | 1 | 260 | 1 | 238 | 9.15e-151 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0925840 | Msa1001290 | 0.846701 | 1.840491e-59 | -8.615850e-47 |
| Msa0966050 | Msa1001290 | 0.857561 | 1.501258e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001290 | MtrunA17_Chr6g0487981 | 88.462 | 260 | 8 | 1 | 1 | 260 | 1 | 238 | 1.76e-154 | 429 |
| Msa1001290 | MtrunA17_Chr8g0344401 | 64.490 | 245 | 64 | 2 | 15 | 258 | 11 | 233 | 3.43e-109 | 315 |
| Msa1001290 | MtrunA17_Chr8g0389361 | 64.822 | 253 | 67 | 1 | 8 | 260 | 10 | 240 | 1.66e-103 | 300 |
| Msa1001290 | MtrunA17_Chr4g0044581 | 50.813 | 246 | 98 | 2 | 15 | 259 | 23 | 246 | 2.53e-85 | 254 |
| Msa1001290 | MtrunA17_Chr4g0053031 | 51.394 | 251 | 97 | 3 | 12 | 260 | 21 | 248 | 1.27e-84 | 253 |
| Msa1001290 | MtrunA17_Chr4g0053331 | 50.202 | 247 | 98 | 3 | 15 | 259 | 19 | 242 | 5.93e-81 | 243 |
| Msa1001290 | MtrunA17_Chr4g0053241 | 49.200 | 250 | 102 | 3 | 12 | 259 | 21 | 247 | 8.41e-76 | 230 |
| Msa1001290 | MtrunA17_Chr4g0053021 | 49.798 | 247 | 99 | 3 | 15 | 259 | 22 | 245 | 2.24e-75 | 229 |
| Msa1001290 | MtrunA17_Chr4g0051041 | 45.528 | 246 | 108 | 4 | 15 | 257 | 5 | 227 | 2.02e-68 | 211 |
| Msa1001290 | MtrunA17_Chr2g0312921 | 34.454 | 238 | 125 | 4 | 21 | 258 | 91 | 297 | 3.33e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001290 | AT4G26220.1 | 56.735 | 245 | 84 | 1 | 15 | 259 | 9 | 231 | 3.32e-98 | 287 |
| Msa1001290 | AT4G34050.1 | 50.202 | 247 | 100 | 2 | 15 | 260 | 35 | 259 | 3.49e-86 | 257 |
| Msa1001290 | AT4G34050.3 | 50.202 | 247 | 100 | 2 | 15 | 260 | 62 | 286 | 4.50e-86 | 258 |
| Msa1001290 | AT1G67980.1 | 50.000 | 248 | 95 | 3 | 15 | 259 | 10 | 231 | 2.70e-82 | 246 |
| Msa1001290 | AT1G24735.1 | 48.790 | 248 | 100 | 4 | 15 | 259 | 16 | 239 | 9.84e-77 | 233 |
| Msa1001290 | AT1G24735.2 | 41.275 | 298 | 99 | 4 | 15 | 259 | 16 | 290 | 3.89e-70 | 218 |
| Msa1001290 | AT1G67990.1 | 45.565 | 248 | 107 | 3 | 15 | 259 | 10 | 232 | 1.08e-69 | 214 |
| Msa1001290 | AT1G24735.3 | 50.500 | 200 | 76 | 2 | 60 | 259 | 18 | 194 | 1.88e-66 | 205 |
| Msa1001290 | AT1G67980.2 | 47.120 | 191 | 68 | 4 | 73 | 259 | 2 | 163 | 1.21e-50 | 164 |
| Msa1001290 | AT3G62000.1 | 33.203 | 256 | 139 | 4 | 4 | 258 | 53 | 277 | 6.07e-44 | 150 |
| Msa1001290 | AT3G61990.1 | 33.594 | 256 | 135 | 5 | 4 | 258 | 68 | 289 | 2.02e-41 | 144 |
| Msa1001290 | AT3G62000.2 | 32.520 | 246 | 134 | 4 | 4 | 248 | 53 | 267 | 4.00e-37 | 134 |
| Msa1001290 | AT4G34050.2 | 43.151 | 146 | 60 | 2 | 116 | 260 | 25 | 148 | 3.64e-34 | 120 |
Find 45 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCAGCTCTACCAATTT+TGG | 0.186253 | 6_4:-85069938 | Msa1001290:CDS |
| GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6_4:-85070012 | Msa1001290:CDS |
| ATTCTTAGCTCTCATAATTA+AGG | 0.258836 | 6_4:-85071114 | Msa1001290:intron |
| TCTAGCAGTTTATCCAAAAT+TGG | 0.261995 | 6_4:+85069925 | None:intergenic |
| ACTGATAATCAAATAACTTT+AGG | 0.273686 | 6_4:+85068802 | None:intergenic |
| AATGGTATTGCAGTATATAT+TGG | 0.318254 | 6_4:-85070762 | Msa1001290:intron |
| TCAAATGTTCCGTCATTTGT+AGG | 0.361220 | 6_4:+85069101 | None:intergenic |
| TTGAGAGGCTCAGGCTCTCT+AGG | 0.392368 | 6_4:+85070725 | None:intergenic |
| CTCAGCTCTTTGAGAGGCTC+AGG | 0.393899 | 6_4:+85070716 | None:intergenic |
| TGCACTGGAACATTCTCTTC+AGG | 0.394174 | 6_4:+85068954 | None:intergenic |
| GTTGATTGATTGTAGAGAAA+TGG | 0.395099 | 6_4:-85070935 | Msa1001290:intron |
| AAGTATATATAGCATTGTTA+TGG | 0.434640 | 6_4:+85071164 | None:intergenic |
| CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6_4:-85069036 | Msa1001290:CDS |
| GAATTTGCTCTCACTTCTGT+TGG | 0.447217 | 6_4:-85068867 | Msa1001290:CDS |
| TTATCCAAAATTGGTAGAGC+TGG | 0.462919 | 6_4:+85069934 | None:intergenic |
| ATGCAAACCTTTCCATCGTC+GGG | 0.465619 | 6_4:+85070136 | None:intergenic |
| GCTCTCACTTCTGTTGGTGA+TGG | 0.468535 | 6_4:-85068861 | Msa1001290:CDS |
| CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6_4:-85069988 | Msa1001290:CDS |
| CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6_4:-85069026 | Msa1001290:CDS |
| ATAGCAACTTTACCTGAGGC+TGG | 0.500969 | 6_4:-85070259 | Msa1001290:CDS |
| ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6_4:+85069985 | None:intergenic |
| TCCTCACTCTGCAATATGAC+AGG | 0.523248 | 6_4:+85070880 | None:intergenic |
| ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6_4:-85069023 | Msa1001290:CDS |
| TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6_4:-85069992 | Msa1001290:CDS |
| CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6_4:+85070155 | None:intergenic |
| CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6_4:+85068939 | None:intergenic |
| GTGATTAGTTGACCAGCCTC+AGG | 0.545407 | 6_4:+85070247 | None:intergenic |
| GCATTCCTCAGCTCTTTGAG+AGG | 0.548288 | 6_4:+85070710 | None:intergenic |
| CATGCAAACCTTTCCATCGT+CGG | 0.548370 | 6_4:+85070135 | None:intergenic |
| TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6_4:-85070029 | Msa1001290:CDS |
| TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6_4:-85068977 | Msa1001290:CDS |
| TGAGAGGCTCAGGCTCTCTA+GGG | 0.570036 | 6_4:+85070726 | None:intergenic |
| CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6_4:-85070143 | Msa1001290:intron |
| TGTCATAAGAAAGGCTGGAG+TGG | 0.586841 | 6_4:-85069983 | Msa1001290:CDS |
| TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6_4:+85068924 | None:intergenic |
| ATGATGCAGCCTACAAATGA+CGG | 0.592697 | 6_4:-85069110 | Msa1001290:intron |
| TCCTGTCATATTGCAGAGTG+AGG | 0.598598 | 6_4:-85070881 | Msa1001290:CDS |
| ATGCCACTGAGAATCATCCT+TGG | 0.600903 | 6_4:-85070691 | Msa1001290:intron |
| GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6_4:-85070148 | Msa1001290:CDS |
| TTTCATAGCAACTTTACCTG+AGG | 0.618675 | 6_4:-85070263 | Msa1001290:CDS |
| CTGAGCCTCTCAAAGAGCTG+AGG | 0.634468 | 6_4:-85070715 | Msa1001290:CDS |
| GCAGAGTGAGGACTTAACAA+AGG | 0.657033 | 6_4:-85070869 | Msa1001290:intron |
| TGAATCCTACATCCTCGTCG+AGG | 0.692750 | 6_4:+85069328 | None:intergenic |
| TGCTGAGATCAACCTCGACG+AGG | 0.705824 | 6_4:-85069340 | Msa1001290:CDS |
| TTACCAAGGATGATTCTCAG+TGG | 0.746004 | 6_4:+85070688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGTAAATTAAATATGAAT+TGG | + | chr6_4:85068907-85068926 | None:intergenic | 15.0% |
| !!! | TTATATATGACAACATTTTA+TGG | - | chr6_4:85070933-85070952 | Msa1001290:intron | 15.0% |
| !!! | TATATATGACAACATTTTAT+GGG | - | chr6_4:85070934-85070953 | Msa1001290:intron | 15.0% |
| !!! | CAAAATGAAATTTTATTGAT+AGG | + | chr6_4:85071213-85071232 | None:intergenic | 15.0% |
| !!! | ATAATATCACTGCTTTTTAT+TGG | + | chr6_4:85068742-85068761 | None:intergenic | 20.0% |
| !! | AAGTATATATAGCATTGTTA+TGG | + | chr6_4:85068767-85068786 | None:intergenic | 20.0% |
| !! | CATAGTAAGAAGAAATAAAA+GGG | + | chr6_4:85069116-85069135 | None:intergenic | 20.0% |
| !! | CTTCAAGATTATGATTTAAT+TGG | - | chr6_4:85069318-85069337 | Msa1001290:intron | 20.0% |
| !!! | GTTTTAAAAATTGAACAGAT+CGG | + | chr6_4:85069598-85069617 | None:intergenic | 20.0% |
| !! | ACAATATCGAATTATATCTA+CGG | + | chr6_4:85069828-85069847 | None:intergenic | 20.0% |
| !!! | TTCTCTTTTTATTATCTGTT+TGG | - | chr6_4:85070043-85070062 | Msa1001290:intron | 20.0% |
| !!! | AATTTTTTCATACATGTCAT+AGG | + | chr6_4:85070129-85070148 | None:intergenic | 20.0% |
| !! | CTTAAAATGGAAATAGATTT+AGG | + | chr6_4:85070240-85070259 | None:intergenic | 20.0% |
| !!! | TATGTTATCAACAACTTTTA+GGG | + | chr6_4:85070297-85070316 | None:intergenic | 20.0% |
| !! | GAATAAAAGATTGTAGAAAA+TGG | + | chr6_4:85070667-85070686 | None:intergenic | 20.0% |
| !!! | ATATATGACAACATTTTATG+GGG | - | chr6_4:85070935-85070954 | Msa1001290:intron | 20.0% |
| !! | ACTGATAATCAAATAACTTT+AGG | + | chr6_4:85071129-85071148 | None:intergenic | 20.0% |
| !! | ATTCTTAGCTCTCATAATTA+AGG | - | chr6_4:85068814-85068833 | Msa1001290:exon | 25.0% |
| ! | TAGAAAAATATGCTTAAGAG+AGG | + | chr6_4:85068855-85068874 | None:intergenic | 25.0% |
| !!! | CTTTTCCTTACTTTTTTCTT+TGG | - | chr6_4:85068931-85068950 | Msa1001290:CDS | 25.0% |
| ! | CAAAACCAAAGAAAAAAGTA+AGG | + | chr6_4:85068939-85068958 | None:intergenic | 25.0% |
| !!! | CTTACTTTTTTCTTTGGTTT+TGG | - | chr6_4:85068937-85068956 | Msa1001290:CDS | 25.0% |
| ! | GCATAGTAAGAAGAAATAAA+AGG | + | chr6_4:85069117-85069136 | None:intergenic | 25.0% |
| ! | AATGGTATTGCAGTATATAT+TGG | - | chr6_4:85069166-85069185 | Msa1001290:intron | 25.0% |
| ! | AGAAGATAGAATAATTACCA+AGG | + | chr6_4:85069257-85069276 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAATTGAACAGAT+CGG | + | chr6_4:85069568-85069587 | None:intergenic | 25.0% |
| ! | AAAACGTTAGTATATTGTGA+TGG | - | chr6_4:85069613-85069632 | Msa1001290:intron | 25.0% |
| !!! | TTGGTTTTCATATTCATTCA+GGG | - | chr6_4:85069641-85069660 | Msa1001290:intron | 25.0% |
| ! | CTAGAAATGTGAACTTAAAA+TGG | + | chr6_4:85070253-85070272 | None:intergenic | 25.0% |
| !! | GTATGTTATCAACAACTTTT+AGG | + | chr6_4:85070298-85070317 | None:intergenic | 25.0% |
| !!! | ATACATTTCTAGTAGATCTT+CGG | - | chr6_4:85070314-85070333 | Msa1001290:intron | 25.0% |
| ! | AGTTACCAATTTAGTTAAGT+AGG | + | chr6_4:85070749-85070768 | None:intergenic | 25.0% |
| GTTGATTGATTGTAGAGAAA+TGG | - | chr6_4:85068993-85069012 | Msa1001290:CDS | 30.0% | |
| ! | ACAGGATTTTTGTAGATTGA+TGG | + | chr6_4:85069033-85069052 | None:intergenic | 30.0% |
| !! | TTCTGCAATGCTTTGAAATT+CGG | - | chr6_4:85069273-85069292 | Msa1001290:intron | 30.0% |
| GTATATTGTGATGGTTAACT+TGG | - | chr6_4:85069622-85069641 | Msa1001290:intron | 30.0% | |
| !! | CTTGGTTTTCATATTCATTC+AGG | - | chr6_4:85069640-85069659 | Msa1001290:intron | 30.0% |
| ! | TGGTTTTCATATTCATTCAG+GGG | - | chr6_4:85069642-85069661 | Msa1001290:intron | 30.0% |
| ! | AGTTTTCCTGTCAATATCTA+TGG | + | chr6_4:85069908-85069927 | None:intergenic | 30.0% |
| GACAGGAAAACTTATGAAAT+TGG | - | chr6_4:85069916-85069935 | Msa1001290:intron | 30.0% | |
| TCTAGCAGTTTATCCAAAAT+TGG | + | chr6_4:85070006-85070025 | None:intergenic | 30.0% | |
| TTCGGTTAAGGTAATTAGTT+AGG | - | chr6_4:85070332-85070351 | Msa1001290:intron | 30.0% | |
| ACACAATAGTAAGATTCTTG+AGG | + | chr6_4:85070716-85070735 | None:intergenic | 30.0% | |
| TTCGACCTACTTAACTAAAT+TGG | - | chr6_4:85070741-85070760 | Msa1001290:CDS | 30.0% | |
| !! | CAATGTACTGATATTTTGTG+TGG | - | chr6_4:85070789-85070808 | Msa1001290:intron | 30.0% |
| TGATGACTCTTGATGAACAA+TGG | - | chr6_4:85069148-85069167 | Msa1001290:intron | 35.0% | |
| TATCTGTCATCCAGTTTAAC+CGG | + | chr6_4:85069359-85069378 | None:intergenic | 35.0% | |
| GTTAAACTATGGTTGAATCG+TGG | + | chr6_4:85069449-85069468 | None:intergenic | 35.0% | |
| CGATTCAACCATAGTTTAAC+AGG | - | chr6_4:85069449-85069468 | Msa1001290:intron | 35.0% | |
| TTTCATAGCAACTTTACCTG+AGG | - | chr6_4:85069665-85069684 | Msa1001290:intron | 35.0% | |
| TCCCAAAAAGACAATTGAAG+TGG | - | chr6_4:85069725-85069744 | Msa1001290:intron | 35.0% | |
| ! | CCCACTTCAATTGTCTTTTT+GGG | + | chr6_4:85069729-85069748 | None:intergenic | 35.0% |
| CCCAAAAAGACAATTGAAGT+GGG | - | chr6_4:85069726-85069745 | Msa1001290:intron | 35.0% | |
| CCAAAAAGACAATTGAAGTG+GGG | - | chr6_4:85069727-85069746 | Msa1001290:intron | 35.0% | |
| CAAAAAGACAATTGAAGTGG+GGG | - | chr6_4:85069728-85069747 | Msa1001290:intron | 35.0% | |
| GATATTGTCCTCAATACTAG+AGG | - | chr6_4:85069840-85069859 | Msa1001290:intron | 35.0% | |
| AGAAACTACCTCTAGTATTG+AGG | + | chr6_4:85069851-85069870 | None:intergenic | 35.0% | |
| TTACAGCCATAGATATTGAC+AGG | - | chr6_4:85069899-85069918 | Msa1001290:intron | 35.0% | |
| TTATCCAAAATTGGTAGAGC+TGG | + | chr6_4:85069997-85070016 | None:intergenic | 35.0% | |
| CTCACATAAGTGTTTATGCT+AGG | + | chr6_4:85070091-85070110 | None:intergenic | 35.0% | |
| ATCATGATGTTTGTCCAAAC+AGG | - | chr6_4:85070213-85070232 | Msa1001290:CDS | 35.0% | |
| TCATGATGTTTGTCCAAACA+GGG | - | chr6_4:85070214-85070233 | Msa1001290:CDS | 35.0% | |
| AAATAGATTTAGGCCCTGTT+TGG | + | chr6_4:85070230-85070249 | None:intergenic | 35.0% | |
| TTCTAGTAGATCTTCGGTTA+AGG | - | chr6_4:85070320-85070339 | Msa1001290:intron | 35.0% | |
| ! | TCTCATTCTCTCGTTTTACA+AGG | + | chr6_4:85070450-85070469 | None:intergenic | 35.0% |
| AAATAGAACGTTCAAGTGAG+CGG | - | chr6_4:85070501-85070520 | Msa1001290:intron | 35.0% | |
| ACACAAGATTTATCGAGGTT+CGG | + | chr6_4:85070634-85070653 | None:intergenic | 35.0% | |
| TGTACACACAAGATTTATCG+AGG | + | chr6_4:85070639-85070658 | None:intergenic | 35.0% | |
| TCAAATGTTCCGTCATTTGT+AGG | + | chr6_4:85070830-85070849 | None:intergenic | 35.0% | |
| !! | CCAGTTTTATCAGTCTTTCA+TGG | + | chr6_4:85070895-85070914 | None:intergenic | 35.0% |
| CCATGAAAGACTGATAAAAC+TGG | - | chr6_4:85070892-85070911 | Msa1001290:CDS | 35.0% | |
| CTGATAAAACTGGTCAAAGT+TGG | - | chr6_4:85070902-85070921 | Msa1001290:CDS | 35.0% | |
| ATAAAACTGGTCAAAGTTGG+TGG | - | chr6_4:85070905-85070924 | Msa1001290:CDS | 35.0% | |
| ! | TATGACAACATTTTATGGGG+TGG | - | chr6_4:85070938-85070957 | Msa1001290:intron | 35.0% |
| TTACCAAGGATGATTCTCAG+TGG | + | chr6_4:85069243-85069262 | None:intergenic | 40.0% | |
| TTGGTTCAATCAGTTCACTC+CGG | - | chr6_4:85069337-85069356 | Msa1001290:intron | 40.0% | |
| GGGTTGAACCTGTTAAACTA+TGG | + | chr6_4:85069460-85069479 | None:intergenic | 40.0% | |
| AGGTTCAACCCGATTCAATA+CGG | - | chr6_4:85069469-85069488 | Msa1001290:intron | 40.0% | |
| TGGTTGAACCGTATTGAATC+GGG | + | chr6_4:85069480-85069499 | None:intergenic | 40.0% | |
| CTGGTTGAACCGTATTGAAT+CGG | + | chr6_4:85069481-85069500 | None:intergenic | 40.0% | |
| TTCTCTGTTGTATTGCAGTC+TGG | + | chr6_4:85069500-85069519 | None:intergenic | 40.0% | |
| ! | CCCCACTTCAATTGTCTTTT+TGG | + | chr6_4:85069730-85069749 | None:intergenic | 40.0% |
| TGGACTACCTGTCATAAGAA+AGG | - | chr6_4:85069936-85069955 | Msa1001290:CDS | 40.0% | |
| !! | CATTTCTAGTAGCGAATCAC+TGG | - | chr6_4:85070264-85070283 | Msa1001290:CDS | 40.0% |
| !! | AGCGTTTTGGACAAGTTAGT+CGG | - | chr6_4:85070362-85070381 | Msa1001290:intron | 40.0% |
| ATGATGCAGCCTACAAATGA+CGG | - | chr6_4:85070818-85070837 | Msa1001290:intron | 40.0% | |
| ! | GAATTTGCTCTCACTTCTGT+TGG | - | chr6_4:85071061-85071080 | Msa1001290:intron | 40.0% |
| TCCTGTCATATTGCAGAGTG+AGG | - | chr6_4:85069047-85069066 | Msa1001290:CDS | 45.0% | |
| TCCTCACTCTGCAATATGAC+AGG | + | chr6_4:85069051-85069070 | None:intergenic | 45.0% | |
| GCAGAGTGAGGACTTAACAA+AGG | - | chr6_4:85069059-85069078 | Msa1001290:CDS | 45.0% | |
| ATGCCACTGAGAATCATCCT+TGG | - | chr6_4:85069237-85069256 | Msa1001290:intron | 45.0% | |
| TCAGTTCACTCCGGTTAAAC+TGG | - | chr6_4:85069346-85069365 | Msa1001290:CDS | 45.0% | |
| GAACAAACCAACTGACGAGT+TGG | - | chr6_4:85069517-85069536 | Msa1001290:intron | 45.0% | |
| !! | AAACCAACTGACGAGTTGGT+CGG | - | chr6_4:85069521-85069540 | Msa1001290:intron | 45.0% |
| ATAGCAACTTTACCTGAGGC+TGG | - | chr6_4:85069669-85069688 | Msa1001290:intron | 45.0% | |
| !! | ATTGAAGTGGGGGTGTTTAC+TGG | - | chr6_4:85069738-85069757 | Msa1001290:intron | 45.0% |
| ATGCAAACCTTTCCATCGTC+GGG | + | chr6_4:85069795-85069814 | None:intergenic | 45.0% | |
| CATGCAAACCTTTCCATCGT+CGG | + | chr6_4:85069796-85069815 | None:intergenic | 45.0% | |
| CTACCTGTCATAAGAAAGGC+TGG | - | chr6_4:85069940-85069959 | Msa1001290:CDS | 45.0% | |
| ACTCCAGCCTTTCTTATGAC+AGG | + | chr6_4:85069946-85069965 | None:intergenic | 45.0% | |
| TGTCATAAGAAAGGCTGGAG+TGG | - | chr6_4:85069945-85069964 | Msa1001290:CDS | 45.0% | |
| ! | GTCTCCAGCTCTACCAATTT+TGG | - | chr6_4:85069990-85070009 | Msa1001290:CDS | 45.0% |
| ACTTGTCCAAAACGCTGAAC+AGG | + | chr6_4:85070358-85070377 | None:intergenic | 45.0% | |
| ! | GGACAAGTTAGTCGGTGTTT+CGG | - | chr6_4:85070370-85070389 | Msa1001290:intron | 45.0% |
| TGCACTGGAACATTCTCTTC+AGG | + | chr6_4:85070977-85070996 | None:intergenic | 45.0% | |
| ! | TCAATTGCTGCTAGTCTCTG+TGG | + | chr6_4:85071007-85071026 | None:intergenic | 45.0% |
| GCATTCCTCAGCTCTTTGAG+AGG | + | chr6_4:85069221-85069240 | None:intergenic | 50.0% | |
| ! | TGGTCGGTTCTCTGTTCAAC+TGG | - | chr6_4:85069537-85069556 | Msa1001290:intron | 50.0% |
| ! | GTGATTAGTTGACCAGCCTC+AGG | + | chr6_4:85069684-85069703 | None:intergenic | 50.0% |
| CGGGAATGTTGAGTGCAGTA+AGG | + | chr6_4:85069776-85069795 | None:intergenic | 50.0% | |
| CAACATTCCCGACGATGGAA+AGG | - | chr6_4:85069785-85069804 | Msa1001290:intron | 50.0% | |
| ! | GTTAGGCCTGTTCAGCGTTT+TGG | - | chr6_4:85070349-85070368 | Msa1001290:intron | 50.0% |
| ATCAACCTCGACGAGGATGT+AGG | - | chr6_4:85070595-85070614 | Msa1001290:intron | 50.0% | |
| TGAATCCTACATCCTCGTCG+AGG | + | chr6_4:85070603-85070622 | None:intergenic | 50.0% | |
| ! | CTCTGTGGTCTAGAATGCAC+TGG | + | chr6_4:85070992-85071011 | None:intergenic | 50.0% |
| ! | GCTCTCACTTCTGTTGGTGA+TGG | - | chr6_4:85071067-85071086 | Msa1001290:intron | 50.0% |
| TGAGAGGCTCAGGCTCTCTA+GGG | + | chr6_4:85069205-85069224 | None:intergenic | 55.0% | |
| TTGAGAGGCTCAGGCTCTCT+AGG | + | chr6_4:85069206-85069225 | None:intergenic | 55.0% | |
| ! | CTCAGCTCTTTGAGAGGCTC+AGG | + | chr6_4:85069215-85069234 | None:intergenic | 55.0% |
| CTGAGCCTCTCAAAGAGCTG+AGG | - | chr6_4:85069213-85069232 | Msa1001290:intron | 55.0% | |
| GAACCGACCAACTCGTCAGT+TGG | + | chr6_4:85069527-85069546 | None:intergenic | 55.0% | |
| GCACTCAACATTCCCGACGA+TGG | - | chr6_4:85069780-85069799 | Msa1001290:intron | 55.0% | |
| TGCTGAGATCAACCTCGACG+AGG | - | chr6_4:85070588-85070607 | Msa1001290:intron | 55.0% | |
| TATGGGGTGGACGTGTTGCA+TGG | - | chr6_4:85070951-85070970 | Msa1001290:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85068709 | 85071241 | 85068709 | ID=Msa1001290;Name=Msa1001290 |
| chr6_4 | mRNA | 85068709 | 85071241 | 85068709 | ID=Msa1001290-mRNA-1;Parent=Msa1001290;Name=Msa1001290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=131|0.66|0.85|0.85|0.83|0.71|7|124|260 |
| chr6_4 | exon | 85068709 | 85069123 | 85068709 | ID=Msa1001290-mRNA-1:exon:16669;Parent=Msa1001290-mRNA-1 |
| chr6_4 | exon | 85069338 | 85069403 | 85069338 | ID=Msa1001290-mRNA-1:exon:16668;Parent=Msa1001290-mRNA-1 |
| chr6_4 | exon | 85069921 | 85070052 | 85069921 | ID=Msa1001290-mRNA-1:exon:16667;Parent=Msa1001290-mRNA-1 |
| chr6_4 | exon | 85070144 | 85070288 | 85070144 | ID=Msa1001290-mRNA-1:exon:16666;Parent=Msa1001290-mRNA-1 |
| chr6_4 | exon | 85070692 | 85070771 | 85070692 | ID=Msa1001290-mRNA-1:exon:16665;Parent=Msa1001290-mRNA-1 |
| chr6_4 | exon | 85070870 | 85070942 | 85070870 | ID=Msa1001290-mRNA-1:exon:16664;Parent=Msa1001290-mRNA-1 |
| chr6_4 | exon | 85071115 | 85071241 | 85071115 | ID=Msa1001290-mRNA-1:exon:16663;Parent=Msa1001290-mRNA-1 |
| chr6_4 | five_prime_UTR | 85071115 | 85071241 | 85071115 | ID=Msa1001290-mRNA-1:five_prime_utr;Parent=Msa1001290-mRNA-1 |
| chr6_4 | five_prime_UTR | 85070939 | 85070942 | 85070939 | ID=Msa1001290-mRNA-1:five_prime_utr;Parent=Msa1001290-mRNA-1 |
| chr6_4 | CDS | 85070870 | 85070938 | 85070870 | ID=Msa1001290-mRNA-1:cds;Parent=Msa1001290-mRNA-1 |
| chr6_4 | CDS | 85070692 | 85070771 | 85070692 | ID=Msa1001290-mRNA-1:cds;Parent=Msa1001290-mRNA-1 |
| chr6_4 | CDS | 85070144 | 85070288 | 85070144 | ID=Msa1001290-mRNA-1:cds;Parent=Msa1001290-mRNA-1 |
| chr6_4 | CDS | 85069921 | 85070052 | 85069921 | ID=Msa1001290-mRNA-1:cds;Parent=Msa1001290-mRNA-1 |
| chr6_4 | CDS | 85069338 | 85069403 | 85069338 | ID=Msa1001290-mRNA-1:cds;Parent=Msa1001290-mRNA-1 |
| chr6_4 | CDS | 85068833 | 85069123 | 85068833 | ID=Msa1001290-mRNA-1:cds;Parent=Msa1001290-mRNA-1 |
| chr6_4 | three_prime_UTR | 85068709 | 85068832 | 85068709 | ID=Msa1001290-mRNA-1:three_prime_utr;Parent=Msa1001290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
