AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375500 MtrunA17_Chr3g0125961 98.421 380 6 0 1 380 1 380 0.0 778
Msa0375500 MtrunA17_Chr3g0125911 97.632 380 9 0 1 380 1 380 0.0 771
Msa0375500 MtrunA17_Chr3g0125941 96.063 381 14 1 1 380 1 381 0.0 755
Msa0375500 MtrunA17_Chr7g0262421 58.355 377 157 0 2 378 3 379 1.37e-170 481
Msa0375500 MtrunA17_Chr1g0183131 56.533 375 163 0 4 378 3 377 1.42e-164 466
Msa0375500 MtrunA17_Chr6g0478081 50.928 377 181 2 2 378 3 375 2.21e-142 409
Msa0375500 MtrunA17_Chr7g0242291 48.564 383 191 5 1 378 12 393 2.15e-127 372
Msa0375500 MtrunA17_Chr3g0132351 49.735 378 184 4 6 378 13 389 8.76e-121 355
Msa0375500 MtrunA17_Chr5g0440521 45.187 374 203 2 7 378 16 389 9.18e-120 352
Msa0375500 MtrunA17_Chr3g0118441 42.744 379 215 2 2 378 6 384 4.21e-110 327
Msa0375500 MtrunA17_Chr7g0242301 44.693 358 161 5 25 378 1 325 1.08e-102 306
Msa0375500 MtrunA17_Chr4g0021211 39.788 377 217 5 5 378 29 398 2.00e-91 280
Msa0375500 MtrunA17_Chr5g0419681 39.474 380 222 6 1 378 1 374 5.51e-90 275
Msa0375500 MtrunA17_Chr3g0118431 42.279 272 155 2 101 370 19 290 1.91e-72 228
Msa0375500 MtrunA17_Chr8g0385221 31.579 380 237 15 12 378 55 424 5.60e-45 160
Msa0375500 MtrunA17_Chr6g0474141 25.405 370 224 13 16 369 19 352 4.51e-22 96.3
Msa0375500 MtrunA17_Chr5g0411801 23.810 378 244 15 12 379 43 386 7.46e-14 72.4
Msa0375500 MtrunA17_Chr4g0064291 26.000 350 218 11 37 379 39 354 2.55e-13 70.5
Msa0375500 MtrunA17_Chr5g0411931 24.642 349 224 10 37 379 39 354 3.12e-13 70.5
Msa0375500 MtrunA17_Chr5g0411821 23.782 349 227 11 37 379 39 354 6.70e-12 66.6
Msa0375500 MtrunA17_Chr5g0411811 24.566 346 228 11 37 379 39 354 1.09e-11 65.5
Msa0375500 MtrunA17_Chr5g0411911 22.767 347 233 9 37 379 41 356 3.47e-11 63.9
Msa0375500 MtrunA17_Chr5g0411841 22.478 347 234 11 37 379 39 354 4.05e-11 63.9
Msa0375500 MtrunA17_Chr5g0411791 23.410 346 232 11 37 379 13 328 5.37e-11 63.2
Msa0375500 MtrunA17_Chr1g0157021 23.547 344 216 9 37 370 38 344 7.75e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0375500 AT1G77120.1 84.350 377 59 0 3 379 2 378 0.0 675
Msa0375500 AT5G43940.1 58.713 373 154 0 4 376 3 375 1.69e-168 476
Msa0375500 AT5G43940.2 56.623 385 155 1 4 376 3 387 2.65e-164 466
Msa0375500 AT5G24760.1 52.151 372 174 2 7 378 12 379 5.47e-147 421
Msa0375500 AT1G64710.1 49.206 378 189 2 4 378 3 380 3.98e-141 406
Msa0375500 AT1G32780.1 49.487 390 187 2 1 380 1 390 5.22e-141 407
Msa0375500 AT5G24760.2 51.130 354 169 2 25 378 1 350 3.81e-136 392
Msa0375500 AT5G24760.3 51.130 354 169 2 25 378 1 350 3.81e-136 392
Msa0375500 AT1G64710.2 48.179 357 182 2 25 378 1 357 1.83e-129 376
Msa0375500 AT5G42250.1 46.524 374 197 3 9 379 17 390 4.32e-120 353
Msa0375500 AT1G22440.1 48.831 385 184 6 2 378 5 384 3.35e-118 348
Msa0375500 AT1G22430.2 46.719 381 200 3 1 378 6 386 8.14e-116 342
Msa0375500 AT1G22430.1 46.719 381 200 3 1 378 6 386 8.14e-116 342
Msa0375500 AT4G22110.2 46.719 381 194 4 6 380 12 389 1.30e-113 337
Msa0375500 AT4G22110.1 46.719 381 194 4 6 380 12 389 1.30e-113 337
Msa0375500 AT1G64710.3 47.059 306 160 1 75 378 6 311 4.13e-107 317
Msa0375500 AT5G24760.4 47.368 266 139 1 113 378 1 265 2.48e-92 278
Msa0375500 AT1G22430.3 50.000 286 140 3 1 283 6 291 8.72e-90 273
Msa0375500 AT1G22430.4 51.406 249 119 2 1 247 6 254 3.09e-81 251
Msa0375500 AT1G22430.5 51.406 249 119 2 1 247 6 254 3.09e-81 251
Msa0375500 AT4G22110.3 51.626 246 111 3 6 246 12 254 6.80e-77 239
Msa0375500 AT5G63620.1 31.016 374 234 14 12 372 57 419 1.48e-40 149
Msa0375500 AT5G63620.2 30.376 372 239 12 12 372 57 419 4.37e-40 147
Msa0375500 AT5G63620.3 30.800 250 158 8 12 251 57 301 5.53e-28 112
Msa0375500 AT5G51970.1 23.454 388 243 14 1 371 6 356 1.61e-17 83.6
Msa0375500 AT5G51970.2 23.454 388 243 14 1 371 6 356 1.61e-17 83.6
Msa0375500 AT1G72680.1 25.223 337 217 9 37 370 37 341 1.42e-13 71.6
Msa0375500 AT4G37990.1 24.444 315 207 8 37 346 35 323 4.43e-12 67.4

Find 163 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATATATTGAAGGAAAA+TGG 0.218301 3_1:-75272023 Msa0375500:three_prime_UTR
TGTCAGCGACCTTTATTTAT+AGG 0.227417 3_1:+75274888 None:intergenic
AACAGGTTTGTCATGATCTT+TGG 0.230210 3_1:+75272997 None:intergenic
TTTCCAACCGGCGGCGCCTT+TGG 0.236810 3_1:+75275057 None:intergenic
GGTTCATCTGTTGCTATCTT+TGG 0.236969 3_1:-75273383 Msa0375500:CDS
GCTTTGTTAATCTCTGAAAA+TGG 0.242441 3_1:+75272353 None:intergenic
AAAATAATATTGAAGAAAAT+TGG 0.247629 3_1:+75271991 None:intergenic
TTCCAACCGGCGGCGCCTTT+GGG 0.254809 3_1:+75275058 None:intergenic
GTTTCCAGCCGATATGAATT+AGG 0.257110 3_1:-75273161 Msa0375500:intron
ACAGGTTTGTCATGATCTTT+GGG 0.270353 3_1:+75272998 None:intergenic
GTCACACTGATGTTTACTTC+TGG 0.274790 3_1:-75274263 Msa0375500:CDS
TTGTTGGCAGCTAAGAAGTT+TGG 0.287505 3_1:-75273040 Msa0375500:intron
CCATTGTTTCCTCGTATATT+TGG 0.294860 3_1:-75274021 Msa0375500:CDS
GCAACAGATGAACCGGGTTT+TGG 0.302998 3_1:+75273392 None:intergenic
TCAGTCAAGATTCTCTATTA+AGG 0.310729 3_1:-75273669 Msa0375500:CDS
GCAACATGTGTGATCTTCTT+AGG 0.311495 3_1:-75273727 Msa0375500:CDS
TGTTGGCAGCTAAGAAGTTT+GGG 0.311983 3_1:-75273039 Msa0375500:intron
TTAAAGTACTATACTATGTT+TGG 0.313560 3_1:-75274963 Msa0375500:five_prime_UTR
GCTGAAGGGGCAAGGATGTC+TGG 0.323064 3_1:-75273212 Msa0375500:CDS
TGGGGTGTTGCTGTACTTGT+TGG 0.336473 3_1:-75272653 Msa0375500:CDS
GTTGAATGAAAGGACTCTTA+AGG 0.347627 3_1:-75272585 Msa0375500:CDS
CTTTCATTCAACAAATTCAT+AGG 0.348960 3_1:+75272596 None:intergenic
ATCTTTGGACTTGGAGCTGT+TGG 0.351212 3_1:-75273368 Msa0375500:CDS
TTGAATGAAAGGACTCTTAA+GGG 0.375052 3_1:-75272584 Msa0375500:CDS
GTTGAACTAACTTGTTGAAC+AGG 0.390252 3_1:+75272980 None:intergenic
ACTTTGTCAAGAGGTGCATC+AGG 0.391287 3_1:+75273563 None:intergenic
GCTGCGGTTGCATGGGAGGC+GGG 0.399452 3_1:-75274369 Msa0375500:CDS
TCACACTGATGTTTACTTCT+GGG 0.404127 3_1:-75274262 Msa0375500:CDS
GGCGGGGAAGCCACTGGTGA+TGG 0.404743 3_1:-75274352 Msa0375500:CDS
CACAAACTCAATAATCCAAA+AGG 0.407834 3_1:+75272180 None:intergenic
TAACTCAGTCCACACTAGTA+TGG 0.408991 3_1:+75272247 None:intergenic
ATTTATGTTCTAGACAGAAT+TGG 0.413129 3_1:+75271953 None:intergenic
AAAGATAGCAACAGATGAAC+CGG 0.416086 3_1:+75273385 None:intergenic
TGGAACCAGCTGCGGTTGCA+TGG 0.416145 3_1:-75274377 Msa0375500:intron
TGAAATGCATCGTCTTTGTT+TGG 0.418800 3_1:+75272626 None:intergenic
TCTGTTGCTATCTTTGGACT+TGG 0.419387 3_1:-75273377 Msa0375500:CDS
GATATTACAGGAACTGGAAC+TGG 0.426601 3_1:-75272399 Msa0375500:intron
CAGTCAAGATTCTCTATTAA+GGG 0.430904 3_1:-75273668 Msa0375500:CDS
CGTATATTTGGTCATGAAGC+TGG 0.431276 3_1:-75274009 Msa0375500:CDS
TACTATGCACCTATAAATAA+AGG 0.437623 3_1:-75274897 Msa0375500:five_prime_UTR
AGCTGCGGTTGCATGGGAGG+CGG 0.441799 3_1:-75274370 Msa0375500:CDS
TATTTATAGGTGCATAGTAC+TGG 0.441832 3_1:+75274901 None:intergenic
AAGTGATTTCCATATATTGA+AGG 0.441903 3_1:-75272030 Msa0375500:three_prime_UTR
ATCAGATGTATCATACGAAT+GGG 0.445545 3_1:-75272302 Msa0375500:CDS
GAATAAGAAGGGAAAAGAAA+AGG 0.448972 3_1:-75275149 Msa0375500:five_prime_UTR
AGCTTATGTCGGTAGCTTGA+TGG 0.451887 3_1:-75275173 Msa0375500:five_prime_UTR
CAAGAGTATAAGAATAAGAA+GGG 0.452251 3_1:-75275231 Msa0375500:five_prime_UTR
TTGTAGAAAAGTACATGAAA+GGG 0.453615 3_1:-75272517 Msa0375500:CDS
TCTGGTGCATCAAGAATCAT+TGG 0.470218 3_1:-75273194 Msa0375500:CDS
CCACACTCCCCTGTGAATAC+AGG 0.474104 3_1:+75273779 None:intergenic
CCTGTATTCACAGGGGAGTG+TGG 0.474817 3_1:-75273779 Msa0375500:CDS
CTATGAATTTGTTGAATGAA+AGG 0.476135 3_1:-75272595 Msa0375500:CDS
AGCTTATGTCGGTAGCTTGA+TGG 0.476330 3_1:-75275092 Msa0375500:five_prime_UTR
CATGCCCTGCCTGTATTCAC+AGG 0.480140 3_1:-75273788 Msa0375500:CDS
AGCCCAAAGGCGCCGCCGGT+TGG 0.482562 3_1:-75275060 Msa0375500:five_prime_UTR
ACAGGCAGGGCATGATCCCC+TGG 0.483648 3_1:+75273797 None:intergenic
CTGTATTCACAGGGGAGTGT+GGG 0.483700 3_1:-75273778 Msa0375500:CDS
ACCAGCTGCGGTTGCATGGG+AGG 0.486050 3_1:-75274373 Msa0375500:intron
ATGGGAGGCGGGGAAGCCAC+TGG 0.486618 3_1:-75274358 Msa0375500:CDS
TGTACCTAATTCATATCGGC+TGG 0.489612 3_1:+75273157 None:intergenic
AATGAACAGAAAATTTAGAA+TGG 0.489887 3_1:+75274791 None:intergenic
ACATTAAAATACTACCACTT+TGG 0.492173 3_1:+75275002 None:intergenic
ACCAAAATTTAGGCTGCTGA+AGG 0.497900 3_1:-75273227 Msa0375500:intron
TTCTTAGGATCAACACGGAC+AGG 0.502318 3_1:-75273712 Msa0375500:CDS
TCAAGAGTATAAGAATAAGA+AGG 0.502440 3_1:-75275232 None:intergenic
TCAAAGCCCAAAGGCGCCGC+CGG 0.504338 3_1:-75275064 Msa0375500:five_prime_UTR
TTAACCATGTCCAACACTGC+TGG 0.504696 3_1:-75274756 Msa0375500:exon
GGAACCAGCTGCGGTTGCAT+GGG 0.505012 3_1:-75274376 Msa0375500:intron
ATCAAGCTACCGACATAAGC+TGG 0.505066 3_1:+75275175 None:intergenic
GCATTGTACCTAATTCATAT+CGG 0.505878 3_1:+75273153 None:intergenic
ATCAAGCTACCGACATAAGC+TGG 0.507238 3_1:+75275094 None:intergenic
GTTGTAGAAAAGTACATGAA+AGG 0.509192 3_1:-75272518 Msa0375500:CDS
CATGTAAAGAATTATGCTGC+TGG 0.513736 3_1:-75272140 Msa0375500:three_prime_UTR
AACCTTAGGAAGATCAGTGC+GGG 0.515441 3_1:+75272538 None:intergenic
CCAAAATTTAGGCTGCTGAA+GGG 0.515926 3_1:-75273226 Msa0375500:intron
ATGTAGATGTACCGACGAAA+TGG 0.519367 3_1:+75273633 None:intergenic
CATTCGTATGATACATCTGA+TGG 0.531716 3_1:+75272304 None:intergenic
CTGCGGTTGCATGGGAGGCG+GGG 0.533283 3_1:-75274368 Msa0375500:CDS
CTCAGCTGTGGAATATGCAC+AGG 0.542001 3_1:-75273533 Msa0375500:intron
TGTTTACTTCTGGGAAGCTA+AGG 0.543162 3_1:-75274253 Msa0375500:intron
TAGCTTGATGGAGAATAAGA+AGG 0.543537 3_1:-75275161 Msa0375500:five_prime_UTR
AGACGGACTTCACCGGCTTG+TGG 0.546092 3_1:+75274309 None:intergenic
ACAAACTCAATAATCCAAAA+GGG 0.550694 3_1:+75272181 None:intergenic
CATCAGATGTATCATACGAA+TGG 0.550987 3_1:-75272303 Msa0375500:CDS
AGTAAACATCAGTGTGACAA+AGG 0.551878 3_1:+75274268 None:intergenic
TCTAATGTCGATCAGGATTG+TGG 0.553261 3_1:-75273852 Msa0375500:intron
TATGTTCTAGACAGAATTGG+TGG 0.553300 3_1:+75271956 None:intergenic
GTGCATAGTACTGGCACTAG+TGG 0.554359 3_1:+75274910 None:intergenic
GTACCGACGAAATGGTGAAT+CGG 0.555313 3_1:+75273641 None:intergenic
AAAGTTTGTATTCTCAGCTG+TGG 0.560671 3_1:-75273545 Msa0375500:CDS
GTTGGCAGCTAAGAAGTTTG+GGG 0.561606 3_1:-75273038 Msa0375500:intron
TATCTTGAGACGGACTTCAC+CGG 0.564597 3_1:+75274302 None:intergenic
TGAATGTACCGGTAGCATCC+AGG 0.564756 3_1:-75272809 Msa0375500:CDS
GATCATAGCCTGGATGCTAC+CGG 0.570554 3_1:+75272801 None:intergenic
GGTGTGACAGATCTAAAACC+AGG 0.572762 3_1:-75273815 Msa0375500:CDS
GTAAACATCAGTGTGACAAA+GGG 0.577816 3_1:+75274269 None:intergenic
ACCCCGCACTGATCTTCCTA+AGG 0.578506 3_1:-75272540 Msa0375500:CDS
CAAAATTTAGGCTGCTGAAG+GGG 0.579040 3_1:-75273225 Msa0375500:intron
ACTCCCCTGTGAATACAGGC+AGG 0.579461 3_1:+75273783 None:intergenic
GAGTACACTGTGGTTCATGC+CGG 0.586769 3_1:-75273605 Msa0375500:CDS
AGAATACAAACTTTGTCAAG+AGG 0.589584 3_1:+75273554 None:intergenic
TTTAGGCTGCTGAAGGGGCA+AGG 0.589857 3_1:-75273220 Msa0375500:intron
CCAAATATACGAGGAAACAA+TGG 0.590862 3_1:+75274021 None:intergenic
TGTATTCACAGGGGAGTGTG+GGG 0.591767 3_1:-75273777 Msa0375500:CDS
TGCATAGTACTGGCACTAGT+GGG 0.594232 3_1:+75274911 None:intergenic
GATTGTGGAGAGCGTAGGCG+AGG 0.594735 3_1:-75273837 Msa0375500:CDS
TCTTAGGATCAACACGGACA+GGG 0.595918 3_1:-75273711 Msa0375500:CDS
GTTCTAGACAGAATTGGTGG+AGG 0.601806 3_1:+75271959 None:intergenic
GAGGTGGCGCCACCACAAGC+CGG 0.602446 3_1:-75274321 Msa0375500:CDS
CAGGTTTGTCATGATCTTTG+GGG 0.602998 3_1:+75272999 None:intergenic
GATGATCTGACCAGCAGTGT+TGG 0.604173 3_1:+75274746 None:intergenic
TGTAGAAAAGTACATGAAAG+GGG 0.605963 3_1:-75272516 Msa0375500:intron
CTTTGTCAAGAGGTGCATCA+GGG 0.608085 3_1:+75273564 None:intergenic
GTGTGACAGATCTAAAACCA+GGG 0.609191 3_1:-75273814 Msa0375500:CDS
ACTAGTATGGCACATTTCAA+CGG 0.609468 3_1:+75272260 None:intergenic
AAATTTAGAATGGAATCGAA+TGG 0.609686 3_1:+75274801 None:intergenic
CGAATGCGGAGATCATAGCC+TGG 0.612238 3_1:+75272791 None:intergenic
ACTGGTGATGGAAGAAGTAG+AGG 0.612676 3_1:-75274340 Msa0375500:CDS
TACTCGTGTTGTGTTGTCTG+TGG 0.614457 3_1:+75274854 None:intergenic
ACTTGGAGCTGTTGGCCTTG+CGG 0.616948 3_1:-75273360 Msa0375500:intron
TCTACTTCTTCCATCACCAG+TGG 0.617716 3_1:+75274342 None:intergenic
CGGACTTCACCGGCTTGTGG+TGG 0.618100 3_1:+75274312 None:intergenic
CTGTCCACATTGTAAGTCAG+AGG 0.618115 3_1:-75273753 Msa0375500:CDS
AGCACGATCCACACCTCCGT+TGG 0.619268 3_1:+75272834 None:intergenic
ATGTAAAGAATTATGCTGCT+GGG 0.619649 3_1:-75272139 Msa0375500:three_prime_UTR
CAGCCGATTCACCATTTCGT+CGG 0.625858 3_1:-75273644 Msa0375500:CDS
AGCTTGATGGAGAATAAGAA+GGG 0.627654 3_1:-75275160 Msa0375500:five_prime_UTR
ATCGTGGACACATTCGAATG+CGG 0.633600 3_1:+75272777 None:intergenic
CTCTCCTCTGACTTACAATG+TGG 0.634714 3_1:+75273749 None:intergenic
AAGAGTATAAGAATAAGAAG+GGG 0.638224 3_1:-75275230 Msa0375500:five_prime_UTR
GATCGTGCTGTTGAATGTAC+CGG 0.639046 3_1:-75272820 Msa0375500:CDS
ATATTTGGTCATGAAGCTGG+AGG 0.639817 3_1:-75274006 Msa0375500:CDS
ATGCCCTGCCTGTATTCACA+GGG 0.640094 3_1:-75273787 Msa0375500:CDS
AACATCAGTGTGACAAAGGG+AGG 0.641785 3_1:+75274272 None:intergenic
AGGTGAAGAGTATCTTGAGA+CGG 0.642729 3_1:+75274292 None:intergenic
TCAGATGTATCATACGAATG+GGG 0.645185 3_1:-75272301 Msa0375500:CDS
GGTCAGATCATCAAGTGTAG+AGG 0.647505 3_1:-75274735 Msa0375500:intron
AGTCGAAAACCAGCTTATGT+CGG 0.651787 3_1:-75275103 Msa0375500:five_prime_UTR
AGTCGAAAACCAGCTTATGT+CGG 0.651787 3_1:-75275184 Msa0375500:five_prime_UTR
CAGATGTATCATACGAATGG+GGG 0.655213 3_1:-75272300 Msa0375500:CDS
CTGACCAGCAGTGTTGGACA+TGG 0.657057 3_1:+75274752 None:intergenic
ATCAGGATTGTGGAGAGCGT+AGG 0.659938 3_1:-75273842 Msa0375500:intron
TATTTGGTCATGAAGCTGGA+GGG 0.661233 3_1:-75274005 Msa0375500:intron
CTTAGGATCAACACGGACAG+GGG 0.662424 3_1:-75273710 Msa0375500:CDS
ATTGTGGAGAGCGTAGGCGA+GGG 0.662603 3_1:-75273836 Msa0375500:CDS
ATGGCAAAGTCAAAGCCCAA+AGG 0.663773 3_1:-75275073 Msa0375500:five_prime_UTR
AAGATAGCAACAGATGAACC+GGG 0.667433 3_1:+75273386 None:intergenic
GGTGATGGAAGAAGTAGAGG+TGG 0.673070 3_1:-75274337 Msa0375500:CDS
CTCCCCTGTGAATACAGGCA+GGG 0.674123 3_1:+75273784 None:intergenic
AATGTTGCTAAACCAAAACC+CGG 0.674195 3_1:-75273404 Msa0375500:CDS
TGAAATGTGCCATACTAGTG+TGG 0.677258 3_1:-75272256 Msa0375500:three_prime_UTR
TGAAATGACCAACGGAGGTG+TGG 0.677840 3_1:-75272842 Msa0375500:CDS
GTAATTGCTGAAATGACCAA+CGG 0.682154 3_1:-75272850 Msa0375500:CDS
GGTATCCCACAAAACCAAAG+TGG 0.688292 3_1:-75275016 Msa0375500:five_prime_UTR
ACCTTAGGAAGATCAGTGCG+GGG 0.690568 3_1:+75272539 None:intergenic
AAATAAAACAACAGCAACAG+CGG 0.692567 3_1:-75275037 Msa0375500:five_prime_UTR
CAACCTTAGGAAGATCAGTG+CGG 0.707330 3_1:+75272537 None:intergenic
TGTGACAGATCTAAAACCAG+GGG 0.720106 3_1:-75273813 Msa0375500:CDS
GCTTCATGACCAAATATACG+AGG 0.725898 3_1:+75274012 None:intergenic
TGCCCTGCCTGTATTCACAG+GGG 0.737931 3_1:-75273786 Msa0375500:CDS
TGATCTTCTTAGGATCAACA+CGG 0.743683 3_1:-75273717 Msa0375500:CDS
ATTGCTGAAATGACCAACGG+AGG 0.744796 3_1:-75272847 Msa0375500:CDS
TACATTCAGCGAGTACACTG+TGG 0.749330 3_1:-75273615 Msa0375500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAACAATCTAAA+TGG + chr3_1:75272551-75272570 None:intergenic 10.0%
!! ACTTAAAATTAATTTATAGT+TGG + chr3_1:75272603-75272622 None:intergenic 10.0%
!!! TAATTTTAGTTACAAAATAT+TGG - chr3_1:75273041-75273060 Msa0375500:intron 10.0%
!! ATATATTAATATCTAAACAT+TGG + chr3_1:75273697-75273716 None:intergenic 10.0%
!!! TTTGTTTTTTTTTTTTGAAT+CGG - chr3_1:75275109-75275128 Msa0375500:five_prime_UTR 10.0%
!! AAAATAATATTGAAGAAAAT+TGG + chr3_1:75275205-75275224 None:intergenic 10.0%
!! ATTTATGTATAATTCTTCTT+AGG - chr3_1:75273016-75273035 Msa0375500:CDS 15.0%
!! AGATATTAATATATGTTTCT+AGG - chr3_1:75273703-75273722 Msa0375500:CDS 15.0%
!! TTGTAAATTGCAATTATTAT+CGG - chr3_1:75273902-75273921 Msa0375500:intron 15.0%
!!! TTCTTTTTAAACCAAAATTT+AGG - chr3_1:75273956-75273975 Msa0375500:intron 15.0%
!!! TTAAAGTACTATACTATGTT+TGG - chr3_1:75272230-75272249 Msa0375500:three_prime_UTR 20.0%
!! AATGAACAGAAAATTTAGAA+TGG + chr3_1:75272405-75272424 None:intergenic 20.0%
!! AGAATTTGAGAAAAAATAGA+TGG + chr3_1:75272486-75272505 None:intergenic 20.0%
!! AAAATAACAATCTAAATGGA+AGG + chr3_1:75272547-75272566 None:intergenic 20.0%
!! TCGAAAATTATTATCAATGT+CGG - chr3_1:75272717-75272736 Msa0375500:intron 20.0%
!!! ATGAATGTTATTGATAATTG+TGG - chr3_1:75273317-75273336 Msa0375500:intron 20.0%
!!! TGAATGTTATTGATAATTGT+GGG - chr3_1:75273318-75273337 Msa0375500:intron 20.0%
!!! CTCTTATTTTTTTTTCTTGT+TGG - chr3_1:75274137-75274156 Msa0375500:intron 20.0%
!!! TTGACTTTTTGTTTTTCTAA+GGG - chr3_1:75274516-75274535 Msa0375500:intron 20.0%
!!! TTTTCATAAATAATCCCTTT+TGG - chr3_1:75274998-75275017 Msa0375500:five_prime_UTR 20.0%
! ACATTAAAATACTACCACTT+TGG + chr3_1:75272194-75272213 None:intergenic 25.0%
! TACTATGCACCTATAAATAA+AGG - chr3_1:75272296-75272315 Msa0375500:CDS 25.0%
!! AAATTTAGAATGGAATCGAA+TGG + chr3_1:75272395-75272414 None:intergenic 25.0%
! TATGCTTTGATTACATAACA+CGG - chr3_1:75272963-75272982 Msa0375500:intron 25.0%
!!! AATATTGGCATACTAGTTTT+TGG - chr3_1:75273056-75273075 Msa0375500:intron 25.0%
!! TTCTTATATTCCTTTGTTTC+AGG - chr3_1:75273141-75273160 Msa0375500:intron 25.0%
!! TCTTATATTCCTTTGTTTCA+GGG - chr3_1:75273142-75273161 Msa0375500:intron 25.0%
!! AACTTCAATCTTAAAGCATT+TGG + chr3_1:75274079-75274098 None:intergenic 25.0%
!! GAATTTGAAGTATGATTCTA+TGG - chr3_1:75274262-75274281 Msa0375500:CDS 25.0%
!! TGATGTTTGTATTTTATACG+AGG - chr3_1:75274292-75274311 Msa0375500:CDS 25.0%
!!! ATTTTGTTTAACATACATCG+TGG + chr3_1:75274435-75274454 None:intergenic 25.0%
! CTTAGAAAAACAAAAAGTCA+AGG + chr3_1:75274517-75274536 None:intergenic 25.0%
!!! CTTGACTTTTTGTTTTTCTA+AGG - chr3_1:75274515-75274534 Msa0375500:intron 25.0%
!!! TTTTTGTTTTTCTAAGGGTT+GGG - chr3_1:75274521-75274540 Msa0375500:intron 25.0%
! CTTTCATTCAACAAATTCAT+AGG + chr3_1:75274600-75274619 None:intergenic 25.0%
!!! CTATGAATTTGTTGAATGAA+AGG - chr3_1:75274598-75274617 Msa0375500:intron 25.0%
!! TTGTAGAAAAGTACATGAAA+GGG - chr3_1:75274676-75274695 Msa0375500:intron 25.0%
! TGATATTACTGTGATATTAC+AGG - chr3_1:75274782-75274801 Msa0375500:five_prime_UTR 25.0%
! ACAAACTCAATAATCCAAAA+GGG + chr3_1:75275015-75275034 None:intergenic 25.0%
!!! AGATTTTGATTTTGTTGTTG+TGG - chr3_1:75275134-75275153 Msa0375500:five_prime_UTR 25.0%
! AAGTGATTTCCATATATTGA+AGG - chr3_1:75275163-75275182 Msa0375500:five_prime_UTR 25.0%
! TTCCATATATTGAAGGAAAA+TGG - chr3_1:75275170-75275189 Msa0375500:five_prime_UTR 25.0%
GAATAAGAAGGGAAAAGAAA+AGG - chr3_1:75272044-75272063 Msa0375500:three_prime_UTR 30.0%
AAATAAAACAACAGCAACAG+CGG - chr3_1:75272156-75272175 Msa0375500:three_prime_UTR 30.0%
TATTTATAGGTGCATAGTAC+TGG + chr3_1:75272295-75272314 None:intergenic 30.0%
!!! TTTCTAGCTTTTGCTTTTTC+AGG - chr3_1:75272519-75272538 Msa0375500:CDS 30.0%
TCAATGAAATCATATGTGTC+AGG + chr3_1:75272685-75272704 None:intergenic 30.0%
AAGTAGTATGATATGAAGCA+CGG + chr3_1:75272770-75272789 None:intergenic 30.0%
TGCATTGCAGTGATTTAATA+TGG - chr3_1:75273116-75273135 Msa0375500:intron 30.0%
TCAGTCAAGATTCTCTATTA+AGG - chr3_1:75273524-75273543 Msa0375500:intron 30.0%
CAGTCAAGATTCTCTATTAA+GGG - chr3_1:75273525-75273544 Msa0375500:intron 30.0%
AGAATACAAACTTTGTCAAG+AGG + chr3_1:75273642-75273661 None:intergenic 30.0%
GAATTAGGAAAACATAGACT+CGG + chr3_1:75273729-75273748 None:intergenic 30.0%
! TTTGGTTTAAAAAGAAGAGC+AGG + chr3_1:75273952-75273971 None:intergenic 30.0%
GCATTGTACCTAATTCATAT+CGG + chr3_1:75274043-75274062 None:intergenic 30.0%
! TTCAATCTTAAAGCATTTGG+TGG + chr3_1:75274076-75274095 None:intergenic 30.0%
!!! CTTTTTGTTTTTCTAAGGGT+TGG - chr3_1:75274520-75274539 Msa0375500:intron 30.0%
!!! TTTTGTTTTTCTAAGGGTTG+GGG - chr3_1:75274522-75274541 Msa0375500:intron 30.0%
TTGAATGAAAGGACTCTTAA+GGG - chr3_1:75274609-75274628 Msa0375500:intron 30.0%
!! ACTCTTAAGGGTACATTTTA+TGG - chr3_1:75274621-75274640 Msa0375500:intron 30.0%
! ATGTACTTTTCTACAACCTT+AGG + chr3_1:75274672-75274691 None:intergenic 30.0%
! GTTGTAGAAAAGTACATGAA+AGG - chr3_1:75274675-75274694 Msa0375500:intron 30.0%
! TGTAGAAAAGTACATGAAAG+GGG - chr3_1:75274677-75274696 Msa0375500:intron 30.0%
! GCTTTGTTAATCTCTGAAAA+TGG + chr3_1:75274843-75274862 None:intergenic 30.0%
!! CTTTTGATTACATGCTGAAA+GGG - chr3_1:75274862-75274881 Msa0375500:five_prime_UTR 30.0%
!! TTTTGATTACATGCTGAAAG+GGG - chr3_1:75274863-75274882 Msa0375500:five_prime_UTR 30.0%
ATCAGATGTATCATACGAAT+GGG - chr3_1:75274891-75274910 Msa0375500:five_prime_UTR 30.0%
CACAAACTCAATAATCCAAA+AGG + chr3_1:75275016-75275035 None:intergenic 30.0%
ATGTAAAGAATTATGCTGCT+GGG - chr3_1:75275054-75275073 Msa0375500:five_prime_UTR 30.0%
!! AGCCATTTTCCTTCAATATA+TGG + chr3_1:75275175-75275194 None:intergenic 30.0%
TAGCTTGATGGAGAATAAGA+AGG - chr3_1:75272032-75272051 Msa0375500:three_prime_UTR 35.0%
AGCTTGATGGAGAATAAGAA+GGG - chr3_1:75272033-75272052 Msa0375500:three_prime_UTR 35.0%
!!! GCTGTTGTTTTATTTCCAAC+CGG + chr3_1:75272151-75272170 None:intergenic 35.0%
!!! TACTACCACTTTGGTTTTGT+GGG + chr3_1:75272185-75272204 None:intergenic 35.0%
!!! ATACTACCACTTTGGTTTTG+TGG + chr3_1:75272186-75272205 None:intergenic 35.0%
! TGTCAGCGACCTTTATTTAT+AGG + chr3_1:75272308-75272327 None:intergenic 35.0%
GAAGTATGTTAGTGCTTCAT+AGG + chr3_1:75272641-75272660 None:intergenic 35.0%
GCACTAACATACTTCAGATT+AGG - chr3_1:75272646-75272665 Msa0375500:CDS 35.0%
! TGAATCCCTTGATTGTGTTT+TGG - chr3_1:75272796-75272815 Msa0375500:CDS 35.0%
TGGTTCCAAAACACAATCAA+GGG + chr3_1:75272804-75272823 None:intergenic 35.0%
GTAAACATCAGTGTGACAAA+GGG + chr3_1:75272927-75272946 None:intergenic 35.0%
AGTAAACATCAGTGTGACAA+AGG + chr3_1:75272928-75272947 None:intergenic 35.0%
TCACACTGATGTTTACTTCT+GGG - chr3_1:75272931-75272950 Msa0375500:intron 35.0%
!! GGTTCTGTTTGTTTTCTTCA+AGG - chr3_1:75273077-75273096 Msa0375500:intron 35.0%
CCAAATATACGAGGAAACAA+TGG + chr3_1:75273175-75273194 None:intergenic 35.0%
CCATTGTTTCCTCGTATATT+TGG - chr3_1:75273172-75273191 Msa0375500:CDS 35.0%
TGATCTTCTTAGGATCAACA+CGG - chr3_1:75273476-75273495 Msa0375500:intron 35.0%
!! GTTGATTTTTGCAACACATC+CGG + chr3_1:75273610-75273629 None:intergenic 35.0%
AAAGTTTGTATTCTCAGCTG+TGG - chr3_1:75273648-75273667 Msa0375500:CDS 35.0%
GCATGGAAGCAAATTGAATT+AGG + chr3_1:75273744-75273763 None:intergenic 35.0%
ATTTGCTTCCATGCTTCTAT+AGG - chr3_1:75273750-75273769 Msa0375500:CDS 35.0%
AATGTTGCTAAACCAAAACC+CGG - chr3_1:75273789-75273808 Msa0375500:CDS 35.0%
AAAGATAGCAACAGATGAAC+CGG + chr3_1:75273811-75273830 None:intergenic 35.0%
AGAAGAGCAGGAGTTAATAA+TGG + chr3_1:75273940-75273959 None:intergenic 35.0%
ACAGGTTTGTCATGATCTTT+GGG + chr3_1:75274198-75274217 None:intergenic 35.0%
AACAGGTTTGTCATGATCTT+TGG + chr3_1:75274199-75274218 None:intergenic 35.0%
!! GTTGAACTAACTTGTTGAAC+AGG + chr3_1:75274216-75274235 None:intergenic 35.0%
CAGAAAATGCATAGAAATCG+TGG + chr3_1:75274238-75274257 None:intergenic 35.0%
GTAATTGCTGAAATGACCAA+CGG - chr3_1:75274343-75274362 Msa0375500:CDS 35.0%
!! TCTTTTTAGCAACAAGCAAG+AGG + chr3_1:75274464-75274483 None:intergenic 35.0%
TGAAATGCATCGTCTTTGTT+TGG + chr3_1:75274570-75274589 None:intergenic 35.0%
GTTGAATGAAAGGACTCTTA+AGG - chr3_1:75274608-75274627 Msa0375500:intron 35.0%
TACTGTGATATTACAGGAAC+TGG - chr3_1:75274788-75274807 Msa0375500:five_prime_UTR 35.0%
!! GCTTTTGATTACATGCTGAA+AGG - chr3_1:75274861-75274880 Msa0375500:five_prime_UTR 35.0%
CATTCGTATGATACATCTGA+TGG + chr3_1:75274892-75274911 None:intergenic 35.0%
CATCAGATGTATCATACGAA+TGG - chr3_1:75274890-75274909 Msa0375500:five_prime_UTR 35.0%
TCAGATGTATCATACGAATG+GGG - chr3_1:75274892-75274911 Msa0375500:five_prime_UTR 35.0%
ACTAGTATGGCACATTTCAA+CGG + chr3_1:75274936-75274955 None:intergenic 35.0%
CATGTAAAGAATTATGCTGC+TGG - chr3_1:75275053-75275072 Msa0375500:five_prime_UTR 35.0%
AGTCGAAAACCAGCTTATGT+CGG - chr3_1:75272009-75272028 Msa0375500:three_prime_UTR 40.0%
AGTCGAAAACCAGCTTATGT+CGG - chr3_1:75272009-75272028 Msa0375500:three_prime_UTR 40.0%
!!! GTTGTTTTATTTCCAACCGG+CGG + chr3_1:75272148-75272167 None:intergenic 40.0%
CTGGTTCCAAAACACAATCA+AGG + chr3_1:75272805-75272824 None:intergenic 40.0%
!! AGGTGAAGAGTATCTTGAGA+CGG + chr3_1:75272904-75272923 None:intergenic 40.0%
GTCACACTGATGTTTACTTC+TGG - chr3_1:75272930-75272949 Msa0375500:intron 40.0%
! TGTTTACTTCTGGGAAGCTA+AGG - chr3_1:75272940-75272959 Msa0375500:intron 40.0%
GCTTTGATTACATAACACGG+CGG - chr3_1:75272966-75272985 Msa0375500:intron 40.0%
CTTTGATTACATAACACGGC+GGG - chr3_1:75272967-75272986 Msa0375500:intron 40.0%
GCTTCATGACCAAATATACG+AGG + chr3_1:75273184-75273203 None:intergenic 40.0%
CGTATATTTGGTCATGAAGC+TGG - chr3_1:75273184-75273203 Msa0375500:CDS 40.0%
ATATTTGGTCATGAAGCTGG+AGG - chr3_1:75273187-75273206 Msa0375500:CDS 40.0%
TATTTGGTCATGAAGCTGGA+GGG - chr3_1:75273188-75273207 Msa0375500:CDS 40.0%
TCTAATGTCGATCAGGATTG+TGG - chr3_1:75273341-75273360 Msa0375500:intron 40.0%
! GTGTGACAGATCTAAAACCA+GGG - chr3_1:75273379-75273398 Msa0375500:CDS 40.0%
! TGTGACAGATCTAAAACCAG+GGG - chr3_1:75273380-75273399 Msa0375500:CDS 40.0%
GCAACATGTGTGATCTTCTT+AGG - chr3_1:75273466-75273485 Msa0375500:intron 40.0%
! ATGTAGATGTACCGACGAAA+TGG + chr3_1:75273563-75273582 None:intergenic 40.0%
TTCCATGCTTCTATAGGTCT+TGG - chr3_1:75273756-75273775 Msa0375500:CDS 40.0%
AAGATAGCAACAGATGAACC+GGG + chr3_1:75273810-75273829 None:intergenic 40.0%
GGTTCATCTGTTGCTATCTT+TGG - chr3_1:75273810-75273829 Msa0375500:CDS 40.0%
TCTGTTGCTATCTTTGGACT+TGG - chr3_1:75273816-75273835 Msa0375500:CDS 40.0%
TACAAGAGTAACATACCGCA+AGG + chr3_1:75273851-75273870 None:intergenic 40.0%
ACCAAAATTTAGGCTGCTGA+AGG - chr3_1:75273966-75273985 Msa0375500:intron 40.0%
CCAAAATTTAGGCTGCTGAA+GGG - chr3_1:75273967-75273986 Msa0375500:intron 40.0%
CAAAATTTAGGCTGCTGAAG+GGG - chr3_1:75273968-75273987 Msa0375500:intron 40.0%
TCTGGTGCATCAAGAATCAT+TGG - chr3_1:75273999-75274018 Msa0375500:intron 40.0%
GTTTCCAGCCGATATGAATT+AGG - chr3_1:75274032-75274051 Msa0375500:CDS 40.0%
TGTACCTAATTCATATCGGC+TGG + chr3_1:75274039-75274058 None:intergenic 40.0%
TTGTTGGCAGCTAAGAAGTT+TGG - chr3_1:75274153-75274172 Msa0375500:intron 40.0%
TGTTGGCAGCTAAGAAGTTT+GGG - chr3_1:75274154-75274173 Msa0375500:intron 40.0%
CAGGTTTGTCATGATCTTTG+GGG + chr3_1:75274197-75274216 None:intergenic 40.0%
GGTTCAGCTTAGCTTAAGTA+AGG + chr3_1:75274496-75274515 None:intergenic 40.0%
GATATTACAGGAACTGGAAC+TGG - chr3_1:75274794-75274813 Msa0375500:five_prime_UTR 40.0%
CAGATGTATCATACGAATGG+GGG - chr3_1:75274893-75274912 Msa0375500:five_prime_UTR 40.0%
TGAAATGTGCCATACTAGTG+TGG - chr3_1:75274937-75274956 Msa0375500:five_prime_UTR 40.0%
TAACTCAGTCCACACTAGTA+TGG + chr3_1:75274949-75274968 None:intergenic 40.0%
ATCAAGCTACCGACATAAGC+TGG + chr3_1:75272021-75272040 None:intergenic 45.0%
AGCTTATGTCGGTAGCTTGA+TGG - chr3_1:75272020-75272039 Msa0375500:three_prime_UTR 45.0%
ATCAAGCTACCGACATAAGC+TGG + chr3_1:75272021-75272040 None:intergenic 45.0%
AGCTTATGTCGGTAGCTTGA+TGG - chr3_1:75272020-75272039 Msa0375500:three_prime_UTR 45.0%
ATGGCAAAGTCAAAGCCCAA+AGG - chr3_1:75272120-75272139 Msa0375500:three_prime_UTR 45.0%
GGTATCCCACAAAACCAAAG+TGG - chr3_1:75272177-75272196 Msa0375500:three_prime_UTR 45.0%
!! TGCATAGTACTGGCACTAGT+GGG + chr3_1:75272285-75272304 None:intergenic 45.0%
TACTCGTGTTGTGTTGTCTG+TGG + chr3_1:75272342-75272361 None:intergenic 45.0%
TTAACCATGTCCAACACTGC+TGG - chr3_1:75272437-75272456 Msa0375500:intron 45.0%
GGTCAGATCATCAAGTGTAG+AGG - chr3_1:75272458-75272477 Msa0375500:intron 45.0%
TATGAAGCACGGATACACAC+CGG + chr3_1:75272759-75272778 None:intergenic 45.0%
!!! TTGTGTTTTGGAACCAGCTG+CGG - chr3_1:75272808-75272827 Msa0375500:CDS 45.0%
TCTACTTCTTCCATCACCAG+TGG + chr3_1:75272854-75272873 None:intergenic 45.0%
!! ACTGGTGATGGAAGAAGTAG+AGG - chr3_1:75272853-75272872 Msa0375500:CDS 45.0%
! TATCTTGAGACGGACTTCAC+CGG + chr3_1:75272894-75272913 None:intergenic 45.0%
AACATCAGTGTGACAAAGGG+AGG + chr3_1:75272924-75272943 None:intergenic 45.0%
TTGTGGGTCTAATGTCGATC+AGG - chr3_1:75273334-75273353 Msa0375500:intron 45.0%
! GGTGTGACAGATCTAAAACC+AGG - chr3_1:75273378-75273397 Msa0375500:CDS 45.0%
CTGTCCACATTGTAAGTCAG+AGG - chr3_1:75273440-75273459 Msa0375500:intron 45.0%
CTCTCCTCTGACTTACAATG+TGG + chr3_1:75273447-75273466 None:intergenic 45.0%
TTCTTAGGATCAACACGGAC+AGG - chr3_1:75273481-75273500 Msa0375500:intron 45.0%
TCTTAGGATCAACACGGACA+GGG - chr3_1:75273482-75273501 Msa0375500:intron 45.0%
! GTACCGACGAAATGGTGAAT+CGG + chr3_1:75273555-75273574 None:intergenic 45.0%
TACATTCAGCGAGTACACTG+TGG - chr3_1:75273578-75273597 Msa0375500:CDS 45.0%
! CTTTGTCAAGAGGTGCATCA+GGG + chr3_1:75273632-75273651 None:intergenic 45.0%
! ACTTTGTCAAGAGGTGCATC+AGG + chr3_1:75273633-75273652 None:intergenic 45.0%
CACCAAGACCTATAGAAGCA+TGG + chr3_1:75273761-75273780 None:intergenic 45.0%
ATCTTTGGACTTGGAGCTGT+TGG - chr3_1:75273825-75273844 Msa0375500:CDS 45.0%
AACATGCGCATACACACTCA+AGG + chr3_1:75273874-75273893 None:intergenic 45.0%
! CCCTTCAGCAGCCTAAATTT+TGG + chr3_1:75273970-75273989 None:intergenic 45.0%
GTTGGCAGCTAAGAAGTTTG+GGG - chr3_1:75274155-75274174 Msa0375500:intron 45.0%
GGAGATTGAGACGTGAACAT+TGG - chr3_1:75274313-75274332 Msa0375500:CDS 45.0%
!! AGACGTGAACATTGGTTTGC+AGG - chr3_1:75274321-75274340 Msa0375500:CDS 45.0%
ATTGCTGAAATGACCAACGG+AGG - chr3_1:75274346-75274365 Msa0375500:CDS 45.0%
! GATCGTGCTGTTGAATGTAC+CGG - chr3_1:75274373-75274392 Msa0375500:intron 45.0%
ATCGTGGACACATTCGAATG+CGG + chr3_1:75274419-75274438 None:intergenic 45.0%
AACCTTAGGAAGATCAGTGC+GGG + chr3_1:75274658-75274677 None:intergenic 45.0%
CAACCTTAGGAAGATCAGTG+CGG + chr3_1:75274659-75274678 None:intergenic 45.0%
CATCGAATCGTGCACAGTTA+CGG - chr3_1:75274712-75274731 Msa0375500:intron 45.0%
!! GTGCATAGTACTGGCACTAG+TGG + chr3_1:75272286-75272305 None:intergenic 50.0%
GATGATCTGACCAGCAGTGT+TGG + chr3_1:75272450-75272469 None:intergenic 50.0%
GATACACACCGGACACAACA+TGG + chr3_1:75272748-75272767 None:intergenic 50.0%
!! GGTGATGGAAGAAGTAGAGG+TGG - chr3_1:75272856-75272875 Msa0375500:intron 50.0%
GGAGTCTGACCCTGAAACAA+AGG + chr3_1:75273154-75273173 None:intergenic 50.0%
! ATCAGGATTGTGGAGAGCGT+AGG - chr3_1:75273351-75273370 Msa0375500:intron 50.0%
ATGCCCTGCCTGTATTCACA+GGG - chr3_1:75273406-75273425 Msa0375500:CDS 50.0%
! CTGTATTCACAGGGGAGTGT+GGG - chr3_1:75273415-75273434 Msa0375500:CDS 50.0%
! TGTATTCACAGGGGAGTGTG+GGG - chr3_1:75273416-75273435 Msa0375500:CDS 50.0%
CTTAGGATCAACACGGACAG+GGG - chr3_1:75273483-75273502 Msa0375500:intron 50.0%
! CAGCCGATTCACCATTTCGT+CGG - chr3_1:75273549-75273568 Msa0375500:CDS 50.0%
GAGTACACTGTGGTTCATGC+CGG - chr3_1:75273588-75273607 Msa0375500:CDS 50.0%
CTCAGCTGTGGAATATGCAC+AGG - chr3_1:75273660-75273679 Msa0375500:CDS 50.0%
! GCAACAGATGAACCGGGTTT+TGG + chr3_1:75273804-75273823 None:intergenic 50.0%
TGAAATGACCAACGGAGGTG+TGG - chr3_1:75274351-75274370 Msa0375500:CDS 50.0%
! TGAATGTACCGGTAGCATCC+AGG - chr3_1:75274384-75274403 Msa0375500:intron 50.0%
GATCATAGCCTGGATGCTAC+CGG + chr3_1:75274395-75274414 None:intergenic 50.0%
!! TGGGGTGTTGCTGTACTTGT+TGG - chr3_1:75274540-75274559 Msa0375500:intron 50.0%
ACCTTAGGAAGATCAGTGCG+GGG + chr3_1:75274657-75274676 None:intergenic 50.0%
! CTGACCAGCAGTGTTGGACA+TGG + chr3_1:75272444-75272463 None:intergenic 55.0%
CGGTGTGTCCATGTTGTGTC+CGG - chr3_1:75272737-75272756 Msa0375500:intron 55.0%
! ATTGTGGAGAGCGTAGGCGA+GGG - chr3_1:75273357-75273376 Msa0375500:intron 55.0%
CATGCCCTGCCTGTATTCAC+AGG - chr3_1:75273405-75273424 Msa0375500:CDS 55.0%
TGCCCTGCCTGTATTCACAG+GGG - chr3_1:75273407-75273426 Msa0375500:CDS 55.0%
CTCCCCTGTGAATACAGGCA+GGG + chr3_1:75273412-75273431 None:intergenic 55.0%
ACTCCCCTGTGAATACAGGC+AGG + chr3_1:75273413-75273432 None:intergenic 55.0%
CCACACTCCCCTGTGAATAC+AGG + chr3_1:75273417-75273436 None:intergenic 55.0%
CCTGTATTCACAGGGGAGTG+TGG - chr3_1:75273414-75273433 Msa0375500:CDS 55.0%
!! ACTTGGAGCTGTTGGCCTTG+CGG - chr3_1:75273833-75273852 Msa0375500:CDS 55.0%
TTTAGGCTGCTGAAGGGGCA+AGG - chr3_1:75273973-75273992 Msa0375500:intron 55.0%
CGAATGCGGAGATCATAGCC+TGG + chr3_1:75274405-75274424 None:intergenic 55.0%
! ACCCCGCACTGATCTTCCTA+AGG - chr3_1:75274653-75274672 Msa0375500:intron 55.0%
TGGAACCAGCTGCGGTTGCA+TGG - chr3_1:75272816-75272835 Msa0375500:CDS 60.0%
GGAACCAGCTGCGGTTGCAT+GGG - chr3_1:75272817-75272836 Msa0375500:CDS 60.0%
!! AGACGGACTTCACCGGCTTG+TGG + chr3_1:75272887-75272906 None:intergenic 60.0%
! GATTGTGGAGAGCGTAGGCG+AGG - chr3_1:75273356-75273375 Msa0375500:intron 60.0%
GCTGAAGGGGCAAGGATGTC+TGG - chr3_1:75273981-75274000 Msa0375500:intron 60.0%
AGCACGATCCACACCTCCGT+TGG + chr3_1:75274362-75274381 None:intergenic 60.0%
!! TCAAAGCCCAAAGGCGCCGC+CGG - chr3_1:75272129-75272148 Msa0375500:three_prime_UTR 65.0%
TTCCAACCGGCGGCGCCTTT+GGG + chr3_1:75272138-75272157 None:intergenic 65.0%
TTTCCAACCGGCGGCGCCTT+TGG + chr3_1:75272139-75272158 None:intergenic 65.0%
ACCAGCTGCGGTTGCATGGG+AGG - chr3_1:75272820-75272839 Msa0375500:CDS 65.0%
AGCTGCGGTTGCATGGGAGG+CGG - chr3_1:75272823-75272842 Msa0375500:CDS 65.0%
!! CGGACTTCACCGGCTTGTGG+TGG + chr3_1:75272884-75272903 None:intergenic 65.0%
ACAGGCAGGGCATGATCCCC+TGG + chr3_1:75273399-75273418 None:intergenic 65.0%
GCCTCCCATGCAACCGCAGC+TGG + chr3_1:75272824-75272843 None:intergenic 70.0%
GCTGCGGTTGCATGGGAGGC+GGG - chr3_1:75272824-75272843 Msa0375500:CDS 70.0%
CTGCGGTTGCATGGGAGGCG+GGG - chr3_1:75272825-75272844 Msa0375500:CDS 70.0%
ATGGGAGGCGGGGAAGCCAC+TGG - chr3_1:75272835-75272854 Msa0375500:CDS 70.0%
GGCGGGGAAGCCACTGGTGA+TGG - chr3_1:75272841-75272860 Msa0375500:CDS 70.0%
GAGGTGGCGCCACCACAAGC+CGG - chr3_1:75272872-75272891 Msa0375500:intron 70.0%
!! AGCCCAAAGGCGCCGCCGGT+TGG - chr3_1:75272133-75272152 Msa0375500:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 75271965 75275250 75271965 ID=Msa0375500;Name=Msa0375500
chr3_1 mRNA 75271965 75275250 75271965 ID=Msa0375500-mRNA-1;Parent=Msa0375500;Name=Msa0375500-mRNA-1;_AED=0.31;_eAED=0.31;_QI=478|1|1|1|0.9|0.81|11|295|380
chr3_1 exon 75271965 75272083 75271965 ID=Msa0375500-mRNA-1:exon:17678;Parent=Msa0375500-mRNA-1
chr3_1 exon 75272119 75272411 75272119 ID=Msa0375500-mRNA-1:exon:17677;Parent=Msa0375500-mRNA-1
chr3_1 exon 75272517 75272678 75272517 ID=Msa0375500-mRNA-1:exon:17676;Parent=Msa0375500-mRNA-1
chr3_1 exon 75272777 75272872 75272777 ID=Msa0375500-mRNA-1:exon:17675;Parent=Msa0375500-mRNA-1
chr3_1 exon 75272991 75273052 75272991 ID=Msa0375500-mRNA-1:exon:17674;Parent=Msa0375500-mRNA-1
chr3_1 exon 75273162 75273237 75273162 ID=Msa0375500-mRNA-1:exon:17673;Parent=Msa0375500-mRNA-1
chr3_1 exon 75273361 75273443 75273361 ID=Msa0375500-mRNA-1:exon:17672;Parent=Msa0375500-mRNA-1
chr3_1 exon 75273534 75273859 75273534 ID=Msa0375500-mRNA-1:exon:17671;Parent=Msa0375500-mRNA-1
chr3_1 exon 75274006 75274052 75274006 ID=Msa0375500-mRNA-1:exon:17670;Parent=Msa0375500-mRNA-1
chr3_1 exon 75274254 75274390 75274254 ID=Msa0375500-mRNA-1:exon:17669;Parent=Msa0375500-mRNA-1
chr3_1 exon 75274736 75275250 75274736 ID=Msa0375500-mRNA-1:exon:17668;Parent=Msa0375500-mRNA-1
chr3_1 five_prime_UTR 75274773 75275250 75274773 ID=Msa0375500-mRNA-1:five_prime_utr;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75274736 75274772 75274736 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75274254 75274390 75274254 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75274006 75274052 75274006 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75273534 75273859 75273534 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75273361 75273443 75273361 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75273162 75273237 75273162 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75272991 75273052 75272991 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75272777 75272872 75272777 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75272517 75272678 75272517 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 CDS 75272295 75272411 75272295 ID=Msa0375500-mRNA-1:cds;Parent=Msa0375500-mRNA-1
chr3_1 three_prime_UTR 75272119 75272294 75272119 ID=Msa0375500-mRNA-1:three_prime_utr;Parent=Msa0375500-mRNA-1
chr3_1 three_prime_UTR 75271965 75272083 75271965 ID=Msa0375500-mRNA-1:three_prime_utr;Parent=Msa0375500-mRNA-1
Gene Sequence

>Msa0375500

ATGTCCAACACTGCTGGTCAGATCATCAAGTGTAGAGCTGCGGTTGCATGGGAGGCGGGGAAGCCACTGGTGATGGAAGAAGTAGAGGTGGCGCCACCACAAGCCGGTGAAGTCCGTCTCAAGATACTCTTCACCTCCCTTTGTCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGCGAGGGTGTGACAGATCTAAAACCAGGGGATCATGCCCTGCCTGTATTCACAGGGGAGTGTGGGGACTGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACGGACAGGGGCGTTATGATCAATGACAATCAGTCAAGATTCTCTATTAAGGGACAGCCGATTCACCATTTCGTCGGTACATCTACATTCAGCGAGTACACTGTGGTTCATGCCGGATGTGTTGCAAAAATCAACCCTGATGCACCTCTTGACAAAGTTTGTATTCTCAGCTGTGGAATATGCACAGGTCTTGGTGCTACTATCAATGTTGCTAAACCAAAACCCGGTTCATCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTTGCGGCTGCTGAAGGGGCAAGGATGTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATATGAATTAGCTAAGAAGTTTGGGGTAAATGAGTTCGTAAACCCCAAAGATCATGACAAACCTGTTCAACAAGTAATTGCTGAAATGACCAACGGAGGTGTGGATCGTGCTGTTGAATGTACCGGTAGCATCCAGGCTATGATCTCCGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGACGATGCATTTCAAACACATCCTATGAATTTGTTGAATGAAAGGACTCTTAAGGGTACATTTTATGGAAACTACAAACCCCGCACTGATCTTCCTAAGGTTGTAGAAAAGTACATGAAAGGGGAACTGGAACTGGAGAAATTCATTACTCACACAATTCCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGTATCATACGAATGGGGGAGTAA

Protein sequence

>Msa0375500

MSNTAGQIIKCRAAVAWEAGKPLVMEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHALPVFTGECGDCPHCKSEESNMCDLLRINTDRGVMINDNQSRFSIKGQPIHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRYELAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFQTHPMNLLNERTLKGTFYGNYKPRTDLPKVVEKYMKGELELEKFITHTIPFSEINKAFDYMLKGESIRCIIRMGE*