Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001560 | XP_003620935.1 | 87.500 | 88 | 4 | 3 | 1 | 83 | 1 | 86 | 8.63e-38 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001560 | G7KJU8 | 87.500 | 88 | 4 | 3 | 1 | 83 | 1 | 86 | 4.12e-38 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0901660 | Msa1001560 | 0.850106 | 2.104236e-60 | -8.615850e-47 |
| Msa0927190 | Msa1001560 | 0.813499 | 2.481246e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001560 | MtrunA17_Chr6g0488521 | 87.500 | 88 | 4 | 3 | 1 | 83 | 1 | 86 | 8.28e-42 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACTAACATGTCTGCTTC+TGG | 0.261998 | 6_4:-85384199 | Msa1001560:CDS |
| TACCAGTTGTGGCATGTTAT+TGG | 0.282214 | 6_4:-85384345 | Msa1001560:CDS |
| ACCAGTTGTGGCATGTTATT+GGG | 0.297646 | 6_4:-85384344 | Msa1001560:CDS |
| GCTCCTCGTCGCATGTTATT+AGG | 0.308517 | 6_4:-85384253 | Msa1001560:CDS |
| AATGACCCAAAGGAATAAAA+AGG | 0.334196 | 6_4:+85383246 | None:intergenic |
| CGTCGCATGTTATTAGGCTT+TGG | 0.345164 | 6_4:-85384247 | Msa1001560:CDS |
| TAACCTTAGTCCAACAAAAT+TGG | 0.367131 | 6_4:+85384366 | None:intergenic |
| CGCTGGTCCCTCTGTTGATC+AGG | 0.393668 | 6_4:-85384143 | Msa1001560:intron |
| TACCACATCAAGACTAGATC+TGG | 0.431771 | 6_4:-85383143 | Msa1001560:CDS |
| GGTCCATCACCACACTTTAG+AGG | 0.439070 | 6_4:+85383205 | None:intergenic |
| GCCCAATAACATGCCACAAC+TGG | 0.440187 | 6_4:+85384343 | None:intergenic |
| GATAGAACAAGAGAAGTTGC+AGG | 0.482833 | 6_4:+85383184 | None:intergenic |
| TATTCTTGCAGAAGCAATGA+AGG | 0.493095 | 6_4:+85384168 | None:intergenic |
| TGTGTGTGTGGCAGCTCTGT+TGG | 0.497376 | 6_4:-85381851 | Msa1001560:intron |
| TGGACTAAGGTTACCAGTTG+TGG | 0.509332 | 6_4:-85384356 | Msa1001560:CDS |
| TAATAGAGAAGAACATGAAG+AGG | 0.515180 | 6_4:+85384297 | None:intergenic |
| TCTCTCAACAGCGAAGAAAG+TGG | 0.526671 | 6_4:-85383358 | Msa1001560:CDS |
| ATCTGGAAATTACAAATCAT+AGG | 0.533004 | 6_4:-85383126 | Msa1001560:intron |
| AAGAGAGAAGACTGCAGCGT+GGG | 0.539887 | 6_4:-85383402 | Msa1001560:CDS |
| GAGGAAACAGTACGAGGATG+TGG | 0.540109 | 6_4:+85384316 | None:intergenic |
| CATCCTCTAAAGTGTGGTGA+TGG | 0.546689 | 6_4:-85383208 | Msa1001560:CDS |
| TTCCAGATCTAGTCTTGATG+TGG | 0.595033 | 6_4:+85383141 | None:intergenic |
| GGTACTGTAGAGATCTAAGA+AGG | 0.597587 | 6_4:+85383162 | None:intergenic |
| CTCATTCATCCTCTAAAGTG+TGG | 0.602390 | 6_4:-85383214 | Msa1001560:CDS |
| GGAAGATAATAATGACCCAA+AGG | 0.607283 | 6_4:+85383236 | None:intergenic |
| GCTTCTGCAAGAATAACCGC+TGG | 0.613481 | 6_4:-85384160 | Msa1001560:CDS |
| AGGTGGGAGGAGAGGAAGCG+CGG | 0.618625 | 6_4:+85383266 | None:intergenic |
| CACACTTTAGAGGATGAATG+AGG | 0.648514 | 6_4:+85383215 | None:intergenic |
| GAAGAGAGAAGACTGCAGCG+TGG | 0.666341 | 6_4:-85383403 | Msa1001560:CDS |
| TGACATACCTGATCAACAGA+GGG | 0.666776 | 6_4:+85384136 | None:intergenic |
| AACAGTACGAGGATGTGGTG+TGG | 0.684710 | 6_4:+85384321 | None:intergenic |
| CTGATCAACAGAGGGACCAG+CGG | 0.689416 | 6_4:+85384144 | None:intergenic |
| CATGAAGAGGAAACAGTACG+AGG | 0.698620 | 6_4:+85384310 | None:intergenic |
| CTGACATACCTGATCAACAG+AGG | 0.704579 | 6_4:+85384135 | None:intergenic |
| AAGCCTAATAACATGCGACG+AGG | 0.749696 | 6_4:+85384250 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATCTTAAATTACTAT+CGG | + | chr6_4:85382143-85382162 | None:intergenic | 15.0% |
| !!! | GATTTTTACATACAAATTTA+TGG | - | chr6_4:85382400-85382419 | Msa1001560:intron | 15.0% |
| !! | ATTAATAATTGCCAAATAAA+TGG | + | chr6_4:85383437-85383456 | None:intergenic | 15.0% |
| !!! | TTTATAACTTTGTTTTCAAT+GGG | - | chr6_4:85383933-85383952 | Msa1001560:intron | 15.0% |
| !! | TTAACATCATAGATTTATTA+AGG | + | chr6_4:85384036-85384055 | None:intergenic | 15.0% |
| !! | ATAAAGGTAGAATTGAAAAT+TGG | - | chr6_4:85382558-85382577 | Msa1001560:intron | 20.0% |
| !! | ATTCTTCAATATCTACAAAA+AGG | + | chr6_4:85382635-85382654 | None:intergenic | 20.0% |
| !! | TGTTGTTGATCTTATATAAA+AGG | - | chr6_4:85383153-85383172 | Msa1001560:CDS | 20.0% |
| !! | GTTGTTGATCTTATATAAAA+GGG | - | chr6_4:85383154-85383173 | Msa1001560:CDS | 20.0% |
| !!! | GTTTTGGAATTTGTATAATA+TGG | + | chr6_4:85383321-85383340 | None:intergenic | 20.0% |
| !! | TGAATCTCTTATTAAAAGAA+GGG | + | chr6_4:85383343-85383362 | None:intergenic | 20.0% |
| !! | TTGAATCTCTTATTAAAAGA+AGG | + | chr6_4:85383344-85383363 | None:intergenic | 20.0% |
| !! | TGAATCAAAATGGAAAATAA+AGG | + | chr6_4:85383377-85383396 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTCCATTTATT+TGG | - | chr6_4:85383423-85383442 | Msa1001560:intron | 20.0% |
| !! | TTTGTCTTAATAGATGTATT+AGG | - | chr6_4:85383831-85383850 | Msa1001560:intron | 20.0% |
| !!! | GTTTATAACTTTGTTTTCAA+TGG | - | chr6_4:85383932-85383951 | Msa1001560:intron | 20.0% |
| !! | ATCTATGATGTTAAAAGAAA+AGG | - | chr6_4:85384042-85384061 | Msa1001560:intron | 20.0% |
| !!! | ATGTTAAAAGAAAAGGTTTT+GGG | - | chr6_4:85384049-85384068 | Msa1001560:intron | 20.0% |
| !! | CCAATTCATAGTATATAAAA+AGG | + | chr6_4:85384158-85384177 | None:intergenic | 20.0% |
| !!! | CCTTTTTATATACTATGAAT+TGG | - | chr6_4:85384155-85384174 | Msa1001560:CDS | 20.0% |
| ! | TGAAATATGCAATGAAAAGA+AGG | + | chr6_4:85382096-85382115 | None:intergenic | 25.0% |
| !! | ATATTTAGTTCGACTTCTAA+AGG | - | chr6_4:85382254-85382273 | Msa1001560:intron | 25.0% |
| !! | TATTTAGTTCGACTTCTAAA+GGG | - | chr6_4:85382255-85382274 | Msa1001560:intron | 25.0% |
| !! | TATCTACAAAAAGGTATAGT+GGG | + | chr6_4:85382626-85382645 | None:intergenic | 25.0% |
| !! | ATATCTACAAAAAGGTATAG+TGG | + | chr6_4:85382627-85382646 | None:intergenic | 25.0% |
| ! | TTTGTAGATATTGAAGAATG+TGG | - | chr6_4:85382636-85382655 | Msa1001560:intron | 25.0% |
| ! | ATCTGGAAATTACAAATCAT+AGG | - | chr6_4:85383061-85383080 | Msa1001560:intron | 25.0% |
| ! | GAAATTACAAATCATAGGTA+TGG | - | chr6_4:85383066-85383085 | Msa1001560:intron | 25.0% |
| !! | TCTTATTAAAAGAAGGGTTT+TGG | + | chr6_4:85383337-85383356 | None:intergenic | 25.0% |
| ! | TTGCCAAATAAATGGAAAAA+AGG | + | chr6_4:85383429-85383448 | None:intergenic | 25.0% |
| ! | TGGCAATTATTAATTCTTGT+TGG | - | chr6_4:85383443-85383462 | Msa1001560:intron | 25.0% |
| !!! | TCCTGTTTTTCTTATTCTTT+TGG | - | chr6_4:85383580-85383599 | Msa1001560:intron | 25.0% |
| !!! | CCTGTTTTTCTTATTCTTTT+GGG | - | chr6_4:85383581-85383600 | Msa1001560:intron | 25.0% |
| !!! | ATTAGTCTTCCTATTATGAT+AGG | + | chr6_4:85383805-85383824 | None:intergenic | 25.0% |
| ! | CTATGTATCTGTCATTAATA+TGG | - | chr6_4:85383899-85383918 | Msa1001560:intron | 25.0% |
| !! | GATGTTAAAAGAAAAGGTTT+TGG | - | chr6_4:85384048-85384067 | Msa1001560:intron | 25.0% |
| TAACCTTAGTCCAACAAAAT+TGG | + | chr6_4:85381824-85381843 | None:intergenic | 30.0% | |
| TAATAGAGAAGAACATGAAG+AGG | + | chr6_4:85381893-85381912 | None:intergenic | 30.0% | |
| ! | ATTTAGTTCGACTTCTAAAG+GGG | - | chr6_4:85382256-85382275 | Msa1001560:intron | 30.0% |
| CAACGCAAATTCAAACATAA+AGG | - | chr6_4:85382542-85382561 | Msa1001560:intron | 30.0% | |
| AGATATTGAAGAATGTGGAA+TGG | - | chr6_4:85382641-85382660 | Msa1001560:intron | 30.0% | |
| ! | GACACTGAATTTCTTTTGTT+TGG | - | chr6_4:85382745-85382764 | Msa1001560:intron | 30.0% |
| !! | AGAAGAAAGAGATTTTGAGT+GGG | + | chr6_4:85382812-85382831 | None:intergenic | 30.0% |
| AAAAAGAAAAGGGCAAAAAG+GGG | + | chr6_4:85382882-85382901 | None:intergenic | 30.0% | |
| CAAAAAGAAAAGGGCAAAAA+GGG | + | chr6_4:85382883-85382902 | None:intergenic | 30.0% | |
| AATGACCCAAAGGAATAAAA+AGG | + | chr6_4:85382944-85382963 | None:intergenic | 30.0% | |
| ! | TTCCAGTAGTTTTCGTATTA+CGG | - | chr6_4:85383293-85383312 | Msa1001560:CDS | 30.0% |
| GCAGCAATGAACTAATTATA+CGG | + | chr6_4:85383471-85383490 | None:intergenic | 30.0% | |
| ATGTAATTAAGCTGCAACAA+TGG | + | chr6_4:85383527-85383546 | None:intergenic | 30.0% | |
| CCCAAAAGAATAAGAAAAAC+AGG | + | chr6_4:85383584-85383603 | None:intergenic | 30.0% | |
| ! | TGAAGGGTAGTATATGTTTT+TGG | - | chr6_4:85383633-85383652 | Msa1001560:intron | 30.0% |
| GCAAAATTTCAGAAGGAAAA+TGG | + | chr6_4:85383723-85383742 | None:intergenic | 30.0% | |
| TACAGATGCAAAATTTCAGA+AGG | + | chr6_4:85383730-85383749 | None:intergenic | 30.0% | |
| AAACACTTGTGTTCTTTCTA+TGG | + | chr6_4:85383767-85383786 | None:intergenic | 30.0% | |
| ATAGATGTATTAGGTCATGA+AGG | - | chr6_4:85383840-85383859 | Msa1001560:intron | 30.0% | |
| AATAGTACAGAGACAAAACA+AGG | + | chr6_4:85383970-85383989 | None:intergenic | 30.0% | |
| AGACATGATCAAATAGCAAA+AGG | + | chr6_4:85384000-85384019 | None:intergenic | 30.0% | |
| GTTCTATTATGTTACAATGC+TGG | - | chr6_4:85384246-85384265 | Msa1001560:CDS | 30.0% | |
| ! | TGACCAATTTTGTTGGACTA+AGG | - | chr6_4:85381818-85381837 | Msa1001560:CDS | 35.0% |
| TATTCTTGCAGAAGCAATGA+AGG | + | chr6_4:85382022-85382041 | None:intergenic | 35.0% | |
| AATGTAATTACATGCGTCGT+CGG | - | chr6_4:85382174-85382193 | Msa1001560:intron | 35.0% | |
| ACACCTTTGATAAGATGTGT+AGG | - | chr6_4:85382210-85382229 | Msa1001560:intron | 35.0% | |
| CTACACTTCAAAATCAATCC+TGG | + | chr6_4:85382282-85382301 | None:intergenic | 35.0% | |
| AAGAAGTGATTCTTGAAGCT+AGG | - | chr6_4:85382352-85382371 | Msa1001560:intron | 35.0% | |
| ! | AAGCTAGGATTTGTAGCTTT+TGG | - | chr6_4:85382367-85382386 | Msa1001560:intron | 35.0% |
| ! | GCGTTGACAAGAATTGATTT+AGG | + | chr6_4:85382528-85382547 | None:intergenic | 35.0% |
| ! | ACAAAAAGGTATAGTGGGAT+GGG | + | chr6_4:85382621-85382640 | None:intergenic | 35.0% |
| ! | TACAAAAAGGTATAGTGGGA+TGG | + | chr6_4:85382622-85382641 | None:intergenic | 35.0% |
| TTGGTTGGAGAGAAATAAGA+AGG | - | chr6_4:85382691-85382710 | Msa1001560:intron | 35.0% | |
| !! | GAAGAAAGAGATTTTGAGTG+GGG | + | chr6_4:85382811-85382830 | None:intergenic | 35.0% |
| ! | GAGAAGAAAGAGATTTTGAG+TGG | + | chr6_4:85382813-85382832 | None:intergenic | 35.0% |
| CCAAAAAGAAAAGGGCAAAA+AGG | + | chr6_4:85382884-85382903 | None:intergenic | 35.0% | |
| ! | CCTTTTTGCCCTTTTCTTTT+TGG | - | chr6_4:85382881-85382900 | Msa1001560:intron | 35.0% |
| CGCGAAAACCAAAAAGAAAA+GGG | + | chr6_4:85382892-85382911 | None:intergenic | 35.0% | |
| !!! | CCTTTTCTTTTTGGTTTTCG+CGG | - | chr6_4:85382890-85382909 | Msa1001560:intron | 35.0% |
| !!! | CTTTTCTTTTTGGTTTTCGC+GGG | - | chr6_4:85382891-85382910 | Msa1001560:intron | 35.0% |
| ! | TCCCACCTTTTTATTCCTTT+GGG | - | chr6_4:85382936-85382955 | Msa1001560:intron | 35.0% |
| ACCCAAAGGAATAAAAAGGT+GGG | + | chr6_4:85382940-85382959 | None:intergenic | 35.0% | |
| GGAAGATAATAATGACCCAA+AGG | + | chr6_4:85382954-85382973 | None:intergenic | 35.0% | |
| TGTAGCTATCCAAACTAAGA+GGG | + | chr6_4:85383257-85383276 | None:intergenic | 35.0% | |
| ATGTAGCTATCCAAACTAAG+AGG | + | chr6_4:85383258-85383277 | None:intergenic | 35.0% | |
| AATAGCAGCGTGAATCAAAA+TGG | + | chr6_4:85383387-85383406 | None:intergenic | 35.0% | |
| GCTTAATTACATCAATCCGT+TGG | - | chr6_4:85383535-85383554 | Msa1001560:intron | 35.0% | |
| TTCTAGATAGTTTCAGCCTA+AGG | - | chr6_4:85383606-85383625 | Msa1001560:intron | 35.0% | |
| TCTAGATAGTTTCAGCCTAA+GGG | - | chr6_4:85383607-85383626 | Msa1001560:intron | 35.0% | |
| TTGTGTTCTTTCTATGGATC+GGG | + | chr6_4:85383761-85383780 | None:intergenic | 35.0% | |
| CTTGTGTTCTTTCTATGGAT+CGG | + | chr6_4:85383762-85383781 | None:intergenic | 35.0% | |
| AGTCTTCCTATTATGATAGG+TGG | + | chr6_4:85383802-85383821 | None:intergenic | 35.0% | |
| ! | TTACAATGCTGTTGCTACTT+TGG | - | chr6_4:85384279-85384298 | Msa1001560:CDS | 35.0% |
| TACCAGTTGTGGCATGTTAT+TGG | - | chr6_4:85381842-85381861 | Msa1001560:intron | 40.0% | |
| ACCAGTTGTGGCATGTTATT+GGG | - | chr6_4:85381843-85381862 | Msa1001560:intron | 40.0% | |
| ATCACTAACATGTCTGCTTC+TGG | - | chr6_4:85381988-85382007 | Msa1001560:intron | 40.0% | |
| TGACATACCTGATCAACAGA+GGG | + | chr6_4:85382054-85382073 | None:intergenic | 40.0% | |
| GCACCTACACATCTTATCAA+AGG | + | chr6_4:85382216-85382235 | None:intergenic | 40.0% | |
| GCTTCAAGAATCACTTCTTG+AGG | + | chr6_4:85382351-85382370 | None:intergenic | 40.0% | |
| ATTCCCCTTTACACTCTGTT+TGG | - | chr6_4:85382672-85382691 | Msa1001560:intron | 40.0% | |
| CAACCAAACAGAGTGTAAAG+GGG | + | chr6_4:85382678-85382697 | None:intergenic | 40.0% | |
| CCAACCAAACAGAGTGTAAA+GGG | + | chr6_4:85382679-85382698 | None:intergenic | 40.0% | |
| TCCAACCAAACAGAGTGTAA+AGG | + | chr6_4:85382680-85382699 | None:intergenic | 40.0% | |
| CCGCGAAAACCAAAAAGAAA+AGG | + | chr6_4:85382893-85382912 | None:intergenic | 40.0% | |
| CAAAGGAATAAAAAGGTGGG+AGG | + | chr6_4:85382937-85382956 | None:intergenic | 40.0% | |
| ! | CTCCCACCTTTTTATTCCTT+TGG | - | chr6_4:85382935-85382954 | Msa1001560:intron | 40.0% |
| GACCCAAAGGAATAAAAAGG+TGG | + | chr6_4:85382941-85382960 | None:intergenic | 40.0% | |
| ! | CACACTTTAGAGGATGAATG+AGG | + | chr6_4:85382975-85382994 | None:intergenic | 40.0% |
| !! | CTCATTCATCCTCTAAAGTG+TGG | - | chr6_4:85382973-85382992 | Msa1001560:intron | 40.0% |
| GATAGAACAAGAGAAGTTGC+AGG | + | chr6_4:85383006-85383025 | None:intergenic | 40.0% | |
| GGTACTGTAGAGATCTAAGA+AGG | + | chr6_4:85383028-85383047 | None:intergenic | 40.0% | |
| TACCACATCAAGACTAGATC+TGG | - | chr6_4:85383044-85383063 | Msa1001560:intron | 40.0% | |
| !! | TTCCAGATCTAGTCTTGATG+TGG | + | chr6_4:85383049-85383068 | None:intergenic | 40.0% |
| ! | TAAAAGGGCATGCAGTACAA+TGG | - | chr6_4:85383169-85383188 | Msa1001560:CDS | 40.0% |
| AAGAGGGGCTATATTCACAA+AGG | + | chr6_4:85383241-85383260 | None:intergenic | 40.0% | |
| GAATATAGCCCCTCTTAGTT+TGG | - | chr6_4:85383245-85383264 | Msa1001560:CDS | 40.0% | |
| GTAGCTATCCAAACTAAGAG+GGG | + | chr6_4:85383256-85383275 | None:intergenic | 40.0% | |
| TGCCGTAATACGAAAACTAC+TGG | + | chr6_4:85383298-85383317 | None:intergenic | 40.0% | |
| GCACGTAAAATTGCTTCCAA+CGG | + | chr6_4:85383554-85383573 | None:intergenic | 40.0% | |
| CTAGATAGTTTCAGCCTAAG+GGG | - | chr6_4:85383608-85383627 | Msa1001560:intron | 40.0% | |
| ATGTATTAGGTCATGAAGGC+AGG | - | chr6_4:85383844-85383863 | Msa1001560:intron | 40.0% | |
| !!! | GGCAGGTTTTGGTTGTTATA+TGG | - | chr6_4:85383861-85383880 | Msa1001560:intron | 40.0% |
| TACAGAGACAAAACAAGGCA+GGG | + | chr6_4:85383965-85383984 | None:intergenic | 40.0% | |
| GATCATGTCTTGTGTTCATG+AGG | - | chr6_4:85384010-85384029 | Msa1001560:intron | 40.0% | |
| ATCAGCTCTGCTAAAAAACC+AGG | + | chr6_4:85384312-85384331 | None:intergenic | 40.0% | |
| !!! | GGTGTTTTTAGGAATTGCGT+TGG | - | chr6_4:85384357-85384376 | Msa1001560:CDS | 40.0% |
| TGGACTAAGGTTACCAGTTG+TGG | - | chr6_4:85381831-85381850 | Msa1001560:CDS | 45.0% | |
| CATGAAGAGGAAACAGTACG+AGG | + | chr6_4:85381880-85381899 | None:intergenic | 45.0% | |
| AAGCCTAATAACATGCGACG+AGG | + | chr6_4:85381940-85381959 | None:intergenic | 45.0% | |
| CGTCGCATGTTATTAGGCTT+TGG | - | chr6_4:85381940-85381959 | Msa1001560:intron | 45.0% | |
| CTGACATACCTGATCAACAG+AGG | + | chr6_4:85382055-85382074 | None:intergenic | 45.0% | |
| AGTGTAAAGGGGAATTGCTC+TGG | + | chr6_4:85382667-85382686 | None:intergenic | 45.0% | |
| CCCTTTACACTCTGTTTGGT+TGG | - | chr6_4:85382676-85382695 | Msa1001560:intron | 45.0% | |
| TCTCTCAACAGCGAAGAAAG+TGG | - | chr6_4:85382829-85382848 | Msa1001560:intron | 45.0% | |
| GAATAAAAAGGTGGGAGGAG+AGG | + | chr6_4:85382932-85382951 | None:intergenic | 45.0% | |
| !! | CATCCTCTAAAGTGTGGTGA+TGG | - | chr6_4:85382979-85382998 | Msa1001560:intron | 45.0% |
| TTTCAGCCTAAGGGGTTTGA+AGG | - | chr6_4:85383616-85383635 | Msa1001560:intron | 45.0% | |
| TTCAGCCTAAGGGGTTTGAA+GGG | - | chr6_4:85383617-85383636 | Msa1001560:intron | 45.0% | |
| TACTACCCTTCAAACCCCTT+AGG | + | chr6_4:85383625-85383644 | None:intergenic | 45.0% | |
| TCGTCCTATACGCATTTCAC+TGG | - | chr6_4:85383672-85383691 | Msa1001560:intron | 45.0% | |
| TCGTCCAGTGAAATGCGTAT+AGG | + | chr6_4:85383679-85383698 | None:intergenic | 45.0% | |
| GACACGCCACCTATCATAAT+AGG | - | chr6_4:85383793-85383812 | Msa1001560:intron | 45.0% | |
| ! | TAGGTCATGAAGGCAGGTTT+TGG | - | chr6_4:85383850-85383869 | Msa1001560:intron | 45.0% |
| ACAGAGACAAAACAAGGCAG+GGG | + | chr6_4:85383964-85383983 | None:intergenic | 45.0% | |
| GTACAGAGACAAAACAAGGC+AGG | + | chr6_4:85383966-85383985 | None:intergenic | 45.0% | |
| TTGCTCATTTGTGCTCCATG+TGG | - | chr6_4:85384191-85384210 | Msa1001560:CDS | 45.0% | |
| TGCTCATTTGTGCTCCATGT+GGG | - | chr6_4:85384192-85384211 | Msa1001560:CDS | 45.0% | |
| ! | AGAGCGTCATATTGTCGTAC+AGG | - | chr6_4:85384224-85384243 | Msa1001560:CDS | 45.0% |
| !! | CAATGCTGTTGCTACTTTGG+TGG | - | chr6_4:85384282-85384301 | Msa1001560:CDS | 45.0% |
| GAGCTGATATGTTGTGTGTG+TGG | - | chr6_4:85384324-85384343 | Msa1001560:CDS | 45.0% | |
| !! | GCAGCTCTGTTGGTGTTTTT+AGG | - | chr6_4:85384346-85384365 | Msa1001560:CDS | 45.0% |
| GCCCAATAACATGCCACAAC+TGG | + | chr6_4:85381847-85381866 | None:intergenic | 50.0% | |
| AACAGTACGAGGATGTGGTG+TGG | + | chr6_4:85381869-85381888 | None:intergenic | 50.0% | |
| GAGGAAACAGTACGAGGATG+TGG | + | chr6_4:85381874-85381893 | None:intergenic | 50.0% | |
| GCTCCTCGTCGCATGTTATT+AGG | - | chr6_4:85381934-85381953 | Msa1001560:intron | 50.0% | |
| GCTTCTGCAAGAATAACCGC+TGG | - | chr6_4:85382027-85382046 | Msa1001560:intron | 50.0% | |
| AATTACATGCGTCGTCGGTG+TGG | - | chr6_4:85382179-85382198 | Msa1001560:intron | 50.0% | |
| ! | GGTATAGTGGGATGGGACAA+AGG | + | chr6_4:85382614-85382633 | None:intergenic | 50.0% |
| AAGAGAGAAGACTGCAGCGT+GGG | - | chr6_4:85382785-85382804 | Msa1001560:intron | 50.0% | |
| GGTCCATCACCACACTTTAG+AGG | + | chr6_4:85382985-85383004 | None:intergenic | 50.0% | |
| TTCACTGGACGACTGACACA+AGG | - | chr6_4:85383687-85383706 | Msa1001560:intron | 50.0% | |
| TCACTGGACGACTGACACAA+GGG | - | chr6_4:85383688-85383707 | Msa1001560:intron | 50.0% | |
| GCTCTCAAAGACTTCCCACA+TGG | + | chr6_4:85384209-85384228 | None:intergenic | 50.0% | |
| !! | TGCTACTTTGGTGGAGTTCC+TGG | - | chr6_4:85384291-85384310 | Msa1001560:CDS | 50.0% |
| CTGATCAACAGAGGGACCAG+CGG | + | chr6_4:85382046-85382065 | None:intergenic | 55.0% | |
| ! | GTTCGACTTCTAAAGGGGCC+AGG | - | chr6_4:85382261-85382280 | Msa1001560:intron | 55.0% |
| GAAGAGAGAAGACTGCAGCG+TGG | - | chr6_4:85382784-85382803 | Msa1001560:intron | 55.0% | |
| TGTGTGTGTGGCAGCTCTGT+TGG | - | chr6_4:85384336-85384355 | Msa1001560:CDS | 55.0% | |
| CGCTGGTCCCTCTGTTGATC+AGG | - | chr6_4:85382044-85382063 | Msa1001560:intron | 60.0% | |
| AGGTGGGAGGAGAGGAAGCG+CGG | + | chr6_4:85382924-85382943 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85381817 | 85384392 | 85381817 | ID=Msa1001560;Name=Msa1001560 |
| chr6_4 | mRNA | 85381817 | 85384392 | 85381817 | ID=Msa1001560-mRNA-1;Parent=Msa1001560;Name=Msa1001560-mRNA-1;_AED=0.44;_eAED=0.48;_QI=0|0|0|1|1|1|3|0|199 |
| chr6_4 | exon | 85384144 | 85384392 | 85384144 | ID=Msa1001560-mRNA-1:exon:16768;Parent=Msa1001560-mRNA-1 |
| chr6_4 | exon | 85383127 | 85383434 | 85383127 | ID=Msa1001560-mRNA-1:exon:16767;Parent=Msa1001560-mRNA-1 |
| chr6_4 | exon | 85381817 | 85381859 | 85381817 | ID=Msa1001560-mRNA-1:exon:16766;Parent=Msa1001560-mRNA-1 |
| chr6_4 | CDS | 85384144 | 85384392 | 85384144 | ID=Msa1001560-mRNA-1:cds;Parent=Msa1001560-mRNA-1 |
| chr6_4 | CDS | 85383127 | 85383434 | 85383127 | ID=Msa1001560-mRNA-1:cds;Parent=Msa1001560-mRNA-1 |
| chr6_4 | CDS | 85381817 | 85381859 | 85381817 | ID=Msa1001560-mRNA-1:cds;Parent=Msa1001560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
