AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901660 MtrunA17_Chr6g0488521 94.792 288 8 3 1 284 1 285 0.0 555
Msa0901660 MtrunA17_Chr7g0226681 40.000 205 117 2 94 296 53 253 1.18e-45 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901660 AT4G29590.1 79.848 263 49 3 44 304 54 314 1.47e-154 435
Msa0901660 AT3G01660.1 44.944 178 94 1 111 288 63 236 2.85e-49 165

Find 84 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAATTCTCCTCCTTAA+AGG 0.176213 6_1:+98439977 None:intergenic
GCCAGAGCAATTCCCCTTTA+AGG 0.183158 6_1:-98439991 Msa0901660:CDS
TCTTCAATTCTTCTTCATTC+AGG 0.212937 6_1:+98439278 None:intergenic
TACTCCTGGAGTAAGCATTT+TGG 0.244912 6_1:-98439457 Msa0901660:CDS
ATCACTAACATGTCTGCTTC+TGG 0.261998 6_1:-98440666 Msa0901660:CDS
TACCAGTTGTGGCATGTTAT+TGG 0.282214 6_1:-98440818 Msa0901660:CDS
TTACAAAAGCCATTTCTATA+TGG 0.289442 6_1:-98437886 Msa0901660:CDS
AACTCGTTCTTGCTTGTATC+CGG 0.295022 6_1:+98439312 None:intergenic
TGGAAATTCTCCTCCTTAAA+GGG 0.295817 6_1:+98439978 None:intergenic
ACCAGTTGTGGCATGTTATT+GGG 0.297646 6_1:-98440817 Msa0901660:CDS
TATCTTCAAATGAGAGTTTA+GGG 0.299222 6_1:+98438805 None:intergenic
GCTCCTCGTCGCATGTTATT+AGG 0.308517 6_1:-98440720 Msa0901660:CDS
TTATCTTCAAATGAGAGTTT+AGG 0.310263 6_1:+98438804 None:intergenic
TCCTCCTGCATAATGAAAAT+AGG 0.331325 6_1:+98437823 None:intergenic
ACAAGATTGTCACCTCATTA+TGG 0.338362 6_1:+98438429 None:intergenic
CGTCGCATGTTATTAGGCTT+TGG 0.345164 6_1:-98440714 Msa0901660:CDS
TAACCTTAGTCCAACAAAAT+TGG 0.367131 6_1:+98440839 None:intergenic
GCTTGTATCCGGGTGGAAAA+TGG 0.376192 6_1:+98439323 None:intergenic
CGCTGGTCCCTCTGTTGATC+AGG 0.393668 6_1:-98440610 Msa0901660:intron
GCCGATCATGTTATGATTGT+TGG 0.395109 6_1:-98437848 Msa0901660:CDS
ATTTCTATATGGACATCAAC+CGG 0.418619 6_1:-98437875 Msa0901660:CDS
CAAGAACGAGTTGTAGGATT+AGG 0.428759 6_1:-98439301 Msa0901660:CDS
TTAGTCAGAGCAGCAATTGC+AGG 0.435836 6_1:+98439510 None:intergenic
GCCCAATAACATGCCACAAC+TGG 0.440187 6_1:+98440816 None:intergenic
TCCTTAAAGGGGAATTGCTC+TGG 0.443401 6_1:+98439990 None:intergenic
CTCATTATGGCCAATCCACC+TGG 0.458613 6_1:+98438442 None:intergenic
ATTGCTAGGTGGGAAAACTT+TGG 0.475531 6_1:+98439479 None:intergenic
ACTCGTTCTTGCTTGTATCC+GGG 0.477291 6_1:+98439313 None:intergenic
GGTTGATGTCCATATAGAAA+TGG 0.479380 6_1:+98437877 None:intergenic
TTTGGATATGTGTAGCAGTT+GGG 0.481811 6_1:-98439439 Msa0901660:intron
GATACTCAAGCCAGGTGGAT+TGG 0.490478 6_1:-98438452 Msa0901660:CDS
ATCTCCAAATCCTGGACGCT+CGG 0.500867 6_1:-98437299 Msa0901660:CDS
CATAACATGATCGGCATCCC+CGG 0.501982 6_1:+98437856 None:intergenic
AAATGTCAAGAGGCTTTGTC+AGG 0.502031 6_1:+98438491 None:intergenic
TGGACTAAGGTTACCAGTTG+TGG 0.509332 6_1:-98440829 Msa0901660:CDS
TAATAGAGAAGAACATGAAG+AGG 0.515180 6_1:+98440764 None:intergenic
ATATCAGCAGTTACTGTGAT+GGG 0.517034 6_1:-98437194 Msa0901660:three_prime_UTR
CTCCAGGAGTATTGCTAGGT+GGG 0.522868 6_1:+98439469 None:intergenic
GTGGATATATCTCCAAATCC+TGG 0.525108 6_1:-98437307 Msa0901660:CDS
CCTAGTTTGTGTTATCACAT+TGG 0.526721 6_1:-98436602 Msa0901660:three_prime_UTR
TTTGTAGATATTGAAGAATG+TGG 0.529167 6_1:-98440018 Msa0901660:intron
AGGAGGATTTGAACCTCCTC+AGG 0.530086 6_1:-98437807 Msa0901660:intron
TTCCCACCTAGCAATACTCC+TGG 0.531377 6_1:-98439471 Msa0901660:CDS
CTAGAGTACACAATGTACAT+AGG 0.534544 6_1:+98437274 None:intergenic
CCAATGTGATAACACAAACT+AGG 0.538059 6_1:+98436602 None:intergenic
GAGGAAACAGTACGAGGATG+TGG 0.540109 6_1:+98440783 None:intergenic
TACAAGCAAGAACGAGTTGT+AGG 0.540637 6_1:-98439307 Msa0901660:CDS
TACATAGGATCCGAGCGTCC+AGG 0.542515 6_1:+98437289 None:intergenic
GAACTTACTCATCATAACGT+TGG 0.551670 6_1:+98439958 None:intergenic
ACGAGGATGTGGTGTGGGTG+TGG 0.552046 6_1:+98440794 None:intergenic
CAGTAACTGCTGATATGTAA+AGG 0.557881 6_1:+98437201 None:intergenic
CATATCAGCAGTTACTGTGA+TGG 0.560930 6_1:-98437195 Msa0901660:three_prime_UTR
TTTCTATATGGACATCAACC+GGG 0.564851 6_1:-98437874 Msa0901660:CDS
CAGTTCATATTTCTCTTAAG+CGG 0.570966 6_1:+98437240 None:intergenic
TCCAACAATCATAACATGAT+CGG 0.579473 6_1:+98437847 None:intergenic
ATATCCAAAATGCTTACTCC+AGG 0.588855 6_1:+98439453 None:intergenic
GGAAATTCTCCTCCTTAAAG+GGG 0.591879 6_1:+98439979 None:intergenic
TAGTCAGAGCAGCAATTGCA+GGG 0.591972 6_1:+98439511 None:intergenic
CTTACTCCAGGAGTATTGCT+AGG 0.592913 6_1:+98439465 None:intergenic
ATCTCCATGAAAATGTCAAG+AGG 0.599849 6_1:+98438481 None:intergenic
GTTGCTGCCGTAGGTCCTCA+CGG 0.600254 6_1:-98438856 Msa0901660:intron
CAGGTGGATTGGCCATAATG+AGG 0.601130 6_1:-98438441 Msa0901660:intron
ACAGTACGAGGATGTGGTGT+GGG 0.604390 6_1:+98440789 None:intergenic
AGAAGAATTGAAGAGAAACC+CGG 0.609792 6_1:-98439269 Msa0901660:intron
ATGAATAGGATACTCAAGCC+AGG 0.611206 6_1:-98438460 Msa0901660:CDS
ACAAACTAGGAGGACTACAT+TGG 0.618369 6_1:+98436615 None:intergenic
CGTTCTTGCTTGTATCCGGG+TGG 0.620983 6_1:+98439316 None:intergenic
TTTCGATGTCATCACTAATG+TGG 0.633015 6_1:-98438778 Msa0901660:intron
TCGATGTGTGTTACGAATCG+AGG 0.637675 6_1:+98439537 None:intergenic
AGAGCAATTCCCCTTTAAGG+AGG 0.643048 6_1:-98439988 Msa0901660:CDS
ACTCCAGGAGTATTGCTAGG+TGG 0.650096 6_1:+98439468 None:intergenic
AGTGTGGGAATTACCTGAGG+AGG 0.662980 6_1:+98437794 None:intergenic
TGACATACCTGATCAACAGA+GGG 0.666776 6_1:+98440603 None:intergenic
TATCAGCAGTTACTGTGATG+GGG 0.671280 6_1:-98437193 Msa0901660:three_prime_UTR
TTCTATATGGACATCAACCG+GGG 0.671373 6_1:-98437873 Msa0901660:CDS
ATGTGATAACACAAACTAGG+AGG 0.680369 6_1:+98436605 None:intergenic
AGATATTGAAGAATGTGGAA+TGG 0.686438 6_1:-98440013 Msa0901660:CDS
CTGATCAACAGAGGGACCAG+CGG 0.689416 6_1:+98440611 None:intergenic
CATGAAGAGGAAACAGTACG+AGG 0.698620 6_1:+98440777 None:intergenic
AACAGTACGAGGATGTGGTG+TGG 0.702946 6_1:+98440788 None:intergenic
CTGACATACCTGATCAACAG+AGG 0.704579 6_1:+98440602 None:intergenic
AATAGGATACTCAAGCCAGG+TGG 0.715241 6_1:-98438457 Msa0901660:CDS
CTTGTACAGTATACTCCGTG+AGG 0.730572 6_1:+98438841 None:intergenic
AAGCCTAATAACATGCGACG+AGG 0.749696 6_1:+98440717 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACTAACAAAAATTAA+GGG + chr6_1:98437816-98437835 None:intergenic 10.0%
!! AACATTAAAAAAATAATCAT+TGG + chr6_1:98440283-98440302 None:intergenic 10.0%
!!! TTTTCATCTTAAATTACTAT+CGG + chr6_1:98436920-98436939 None:intergenic 15.0%
!!! GATTTTTACATACAAATTTA+TGG - chr6_1:98437177-98437196 Msa0901660:three_prime_UTR 15.0%
!!! ATAATTTTTGTTAGATTGTT+TGG + chr6_1:98437703-98437722 None:intergenic 15.0%
!! AAAAACTAACAAAAATTAAG+GGG + chr6_1:98437815-98437834 None:intergenic 15.0%
!! GTAAAAACTAACAAAAATTA+AGG + chr6_1:98437817-98437836 None:intergenic 15.0%
!! TTAATTAAAAAACAATGACT+TGG - chr6_1:98438487-98438506 Msa0901660:CDS 15.0%
!!! ATATATTTTAACTTCGATAT+TGG - chr6_1:98438691-98438710 Msa0901660:intron 15.0%
!! GATGTTATTATATCTATTAT+TGG - chr6_1:98439447-98439466 Msa0901660:CDS 15.0%
!! TATTAATAACTGATCATAAA+GGG - chr6_1:98439819-98439838 Msa0901660:intron 15.0%
!! ATTCTTCAATATCTACAAAA+AGG + chr6_1:98437412-98437431 None:intergenic 20.0%
!!! ATTTGTTCATAAGTTGTTTT+CGG + chr6_1:98437668-98437687 None:intergenic 20.0%
!! AAAACTAACAAAAATTAAGG+GGG + chr6_1:98437814-98437833 None:intergenic 20.0%
!! ATAAATCTTTACTTTGCATT+AGG - chr6_1:98438081-98438100 Msa0901660:intron 20.0%
!! AAATGAAATGATGAATTTCT+TGG - chr6_1:98438817-98438836 Msa0901660:CDS 20.0%
!! TAACATCAAAAACAGATAAA+TGG + chr6_1:98439434-98439453 None:intergenic 20.0%
!! GTATTAATAACTGATCATAA+AGG - chr6_1:98439818-98439837 Msa0901660:intron 20.0%
!! TAACAACGTTATTACAAAAA+GGG + chr6_1:98439920-98439939 None:intergenic 20.0%
!! TTAACAACGTTATTACAAAA+AGG + chr6_1:98439921-98439940 None:intergenic 20.0%
!!! AGGAAAATTCTGTTTTATAT+AGG + chr6_1:98439995-98440014 None:intergenic 20.0%
!! TTTATTGCACATGATAATAA+TGG + chr6_1:98440373-98440392 None:intergenic 20.0%
!! ATAGGGAAATTATAATATCT+TGG + chr6_1:98440497-98440516 None:intergenic 20.0%
!!! ATCTTTTCTATCATTGTTTT+TGG - chr6_1:98440575-98440594 Msa0901660:intron 20.0%
!!! AAATTGTAATTTTGAGTATG+TGG - chr6_1:98440729-98440748 Msa0901660:CDS 20.0%
! TGAAATATGCAATGAAAAGA+AGG + chr6_1:98436873-98436892 None:intergenic 25.0%
!! ATATTTAGTTCGACTTCTAA+AGG - chr6_1:98437031-98437050 Msa0901660:intron 25.0%
!! TATTTAGTTCGACTTCTAAA+GGG - chr6_1:98437032-98437051 Msa0901660:intron 25.0%
! ATAAAGGCAGAATTGAAAAT+TGG - chr6_1:98437335-98437354 Msa0901660:intron 25.0%
!! TATCTACAAAAAGGTATAGT+GGG + chr6_1:98437403-98437422 None:intergenic 25.0%
!! ATATCTACAAAAAGGTATAG+TGG + chr6_1:98437404-98437423 None:intergenic 25.0%
! TTTGTAGATATTGAAGAATG+TGG - chr6_1:98437413-98437432 Msa0901660:intron 25.0%
! AAGTTCAAACAACTATACTT+TGG - chr6_1:98437490-98437509 Msa0901660:intron 25.0%
! AACTATACTTTGGTTATGTT+TGG - chr6_1:98437500-98437519 Msa0901660:intron 25.0%
! GACTTATTTCAACTTATCTA+TGG + chr6_1:98437727-98437746 None:intergenic 25.0%
!! TATCAGAAAATTTTCCCTTT+AGG - chr6_1:98437844-98437863 Msa0901660:CDS 25.0%
! TTAGGATACCAAATTCAAAA+TGG + chr6_1:98438388-98438407 None:intergenic 25.0%
! CAATCTAGAAAAGTAATCTT+AGG + chr6_1:98438406-98438425 None:intergenic 25.0%
!!! CTAAGATTACTTTTCTAGAT+TGG - chr6_1:98438404-98438423 Msa0901660:intron 25.0%
! TTGGCTAGATAATCATATTA+AGG + chr6_1:98438458-98438477 None:intergenic 25.0%
! AGCAACAATTTCTATCAATA+AGG + chr6_1:98438561-98438580 None:intergenic 25.0%
! TATCTTCAAATGAGAGTTTA+GGG + chr6_1:98438629-98438648 None:intergenic 25.0%
! TTATCTTCAAATGAGAGTTT+AGG + chr6_1:98438630-98438649 None:intergenic 25.0%
! AAGTAATTCCAAAATGATAG+CGG + chr6_1:98439028-98439047 None:intergenic 25.0%
!!! AATTATACACTACTGATTCT+AGG + chr6_1:98439210-98439229 None:intergenic 25.0%
! TGTATAATTTCACACTGAAA+AGG - chr6_1:98439221-98439240 Msa0901660:intron 25.0%
! GTATAATTTCACACTGAAAA+GGG - chr6_1:98439222-98439241 Msa0901660:intron 25.0%
! TTACAAAAGCCATTTCTATA+TGG - chr6_1:98439545-98439564 Msa0901660:CDS 25.0%
!! TGATATTTTCCCATTTTGTT+AGG - chr6_1:98439659-98439678 Msa0901660:intron 25.0%
! ATACAAGAATTACAACAACA+TGG + chr6_1:98439802-98439821 None:intergenic 25.0%
! CGATTTCTGTTCTTATTATT+CGG - chr6_1:98439889-98439908 Msa0901660:intron 25.0%
! TAATAACGTTGTTAACATAC+TGG - chr6_1:98439926-98439945 Msa0901660:intron 25.0%
!!! CATGTAACTTCTTTTTTTGT+AGG - chr6_1:98440099-98440118 Msa0901660:intron 25.0%
! TACTATCTCATTCACTTATA+GGG + chr6_1:98440514-98440533 None:intergenic 25.0%
!!! AATGAGATAGTAGCTATTTT+AGG - chr6_1:98440522-98440541 Msa0901660:intron 25.0%
!!! TCTATCATTGTTTTTGGTAT+TGG - chr6_1:98440581-98440600 Msa0901660:intron 25.0%
! TTTACATCTTATTCCTAACT+TGG + chr6_1:98440759-98440778 None:intergenic 25.0%
! TAGGAATAAGATGTAAAAGT+AGG - chr6_1:98440762-98440781 Msa0901660:CDS 25.0%
! TTTCTCAGAACTAAATAACA+TGG + chr6_1:98440788-98440807 None:intergenic 25.0%
TTCCTAGATAGACCAAAAAA+AGG - chr6_1:98436518-98436537 Msa0901660:three_prime_UTR 30.0%
!!! TACCTTTTTTTGGTCTATCT+AGG + chr6_1:98436523-98436542 None:intergenic 30.0%
!!! ATGCTACTGTTACCTTTTTT+TGG + chr6_1:98436533-98436552 None:intergenic 30.0%
TAACCTTAGTCCAACAAAAT+TGG + chr6_1:98436595-98436614 None:intergenic 30.0%
TAATAGAGAAGAACATGAAG+AGG + chr6_1:98436670-98436689 None:intergenic 30.0%
!! TATTTTTGCAGAAGCAATGA+AGG + chr6_1:98436799-98436818 None:intergenic 30.0%
! ATTTAGTTCGACTTCTAAAG+GGG - chr6_1:98437033-98437052 Msa0901660:intron 30.0%
CAACGCAAATTCAAACATAA+AGG - chr6_1:98437319-98437338 Msa0901660:intron 30.0%
AGATATTGAAGAATGTGGAA+TGG - chr6_1:98437418-98437437 Msa0901660:intron 30.0%
AAGTTCTTCAAGATAGCTTA+TGG + chr6_1:98437634-98437653 None:intergenic 30.0%
TGAAATAAGTCAATCCAAAC+AGG - chr6_1:98437736-98437755 Msa0901660:intron 30.0%
TTGGGGTAAGATTTATGAAA+TGG + chr6_1:98437788-98437807 None:intergenic 30.0%
AAAAATTAAGGGGGTAATTG+GGG + chr6_1:98437805-98437824 None:intergenic 30.0%
CAAAAATTAAGGGGGTAATT+GGG + chr6_1:98437806-98437825 None:intergenic 30.0%
ACAAAAATTAAGGGGGTAAT+TGG + chr6_1:98437807-98437826 None:intergenic 30.0%
TCTTCAATTCTTCTTCATTC+AGG + chr6_1:98438156-98438175 None:intergenic 30.0%
ACAACAGCACTATAAAATAG+CGG + chr6_1:98438355-98438374 None:intergenic 30.0%
!! TATTTTATAGTGCTGTTGTG+TGG - chr6_1:98438356-98438375 Msa0901660:intron 30.0%
TTAACTTCGATATTGGAAAC+TGG - chr6_1:98438698-98438717 Msa0901660:intron 30.0%
GAAAACTCAATATATCTTGC+AGG - chr6_1:98438904-98438923 Msa0901660:intron 30.0%
! ACATTTTCATGGAGATGAAT+AGG - chr6_1:98438957-98438976 Msa0901660:intron 30.0%
! TAAGCAAGTGACAATTTTGT+AGG + chr6_1:98439108-98439127 None:intergenic 30.0%
CACAATATAACACTGAAACA+CGG + chr6_1:98439259-98439278 None:intergenic 30.0%
GAAGTCAAAGTTAGTTGAAT+AGG + chr6_1:98439491-98439510 None:intergenic 30.0%
ATTTCTATATGGACATCAAC+CGG - chr6_1:98439556-98439575 Msa0901660:CDS 30.0%
TCCAACAATCATAACATGAT+CGG + chr6_1:98439587-98439606 None:intergenic 30.0%
AAATGGGAAAATATCAGTGT+GGG + chr6_1:98439655-98439674 None:intergenic 30.0%
AAAATGGGAAAATATCAGTG+TGG + chr6_1:98439656-98439675 None:intergenic 30.0%
!! GGTAGTTACATTTTAGAAAG+AGG + chr6_1:98439716-98439735 None:intergenic 30.0%
GTAAAATATGCAACAAAGAG+AGG + chr6_1:98439737-98439756 None:intergenic 30.0%
TGTTTCATGACTACTACTAA+AGG + chr6_1:98440015-98440034 None:intergenic 30.0%
CAGTTCATATTTCTCTTAAG+CGG + chr6_1:98440194-98440213 None:intergenic 30.0%
TAAAGACAAGAGAGTTAAAG+TGG - chr6_1:98440333-98440352 Msa0901660:intron 30.0%
! TGATAATAATGGTAGTGTCA+TGG + chr6_1:98440362-98440381 None:intergenic 30.0%
ACAGGAAAATTATGAAACCT+TGG + chr6_1:98440430-98440449 None:intergenic 30.0%
AGTTTATCTGATTCACTTAC+AGG + chr6_1:98440448-98440467 None:intergenic 30.0%
CTACTATCTCATTCACTTAT+AGG + chr6_1:98440515-98440534 None:intergenic 30.0%
GATGGATCATATTGATCTTT+CGG - chr6_1:98440678-98440697 Msa0901660:CDS 30.0%
ACAATGCCAAGAAAAAACTA+AGG - chr6_1:98440915-98440934 Msa0901660:five_prime_UTR 30.0%
CAATGCCAAGAAAAAACTAA+GGG - chr6_1:98440916-98440935 Msa0901660:five_prime_UTR 30.0%
! TTTTGGTCTATCTAGGAACA+TGG + chr6_1:98436516-98436535 None:intergenic 35.0%
! CTGAAGATGACCAATTTTGT+TGG - chr6_1:98436582-98436601 Msa0901660:three_prime_UTR 35.0%
! TGACCAATTTTGTTGGACTA+AGG - chr6_1:98436589-98436608 Msa0901660:three_prime_UTR 35.0%
AATGTAATTACATGCGTCGT+CGG - chr6_1:98436951-98436970 Msa0901660:intron 35.0%
ACACCTTTGATAAGATGTGT+AGG - chr6_1:98436987-98437006 Msa0901660:intron 35.0%
CTACACTTCAAAATCAATCC+TGG + chr6_1:98437059-98437078 None:intergenic 35.0%
AAGAAGTGATTCTTGAAGCT+AGG - chr6_1:98437129-98437148 Msa0901660:intron 35.0%
! AAGCTAGGATTTGTAGCTTT+TGG - chr6_1:98437144-98437163 Msa0901660:intron 35.0%
! GCGTTGACAAGAATTGATTT+AGG + chr6_1:98437305-98437324 None:intergenic 35.0%
! ACAAAAAGGTATAGTGGGAT+GGG + chr6_1:98437398-98437417 None:intergenic 35.0%
! TACAAAAAGGTATAGTGGGA+TGG + chr6_1:98437399-98437418 None:intergenic 35.0%
TGGAAATTCTCCTCCTTAAA+GGG + chr6_1:98437456-98437475 None:intergenic 35.0%
TTGGAAATTCTCCTCCTTAA+AGG + chr6_1:98437457-98437476 None:intergenic 35.0%
GAACTTACTCATCATAACGT+TGG + chr6_1:98437476-98437495 None:intergenic 35.0%
CTTAAATGTACGATCCTGTT+TGG + chr6_1:98437753-98437772 None:intergenic 35.0%
ATATCCAAAATGCTTACTCC+AGG + chr6_1:98437981-98438000 None:intergenic 35.0%
! TTTTGGATATGTGTAGCAGT+TGG - chr6_1:98437991-98438010 Msa0901660:intron 35.0%
TTTGGATATGTGTAGCAGTT+GGG - chr6_1:98437992-98438011 Msa0901660:intron 35.0%
AGAAGAATTGAAGAGAAACC+CGG - chr6_1:98438162-98438181 Msa0901660:intron 35.0%
TTGTTAAACAGTGTCTACTG+CGG + chr6_1:98438288-98438307 None:intergenic 35.0%
!! GGTTGTAGCCATTTTGAATT+TGG - chr6_1:98438377-98438396 Msa0901660:intron 35.0%
TCTATTCTGCTAGAGAAACA+TGG - chr6_1:98438535-98438554 Msa0901660:intron 35.0%
TTTCGATGTCATCACTAATG+TGG - chr6_1:98438653-98438672 Msa0901660:intron 35.0%
! AAAGCCTCTTGACATTTTCA+TGG - chr6_1:98438946-98438965 Msa0901660:intron 35.0%
ATCTCCATGAAAATGTCAAG+AGG + chr6_1:98438953-98438972 None:intergenic 35.0%
ACAAGATTGTCACCTCATTA+TGG + chr6_1:98439005-98439024 None:intergenic 35.0%
! AATCTTGTCCGCTATCATTT+TGG - chr6_1:98439017-98439036 Msa0901660:intron 35.0%
TAGTTGAATAGGACCATAAG+AGG + chr6_1:98439480-98439499 None:intergenic 35.0%
! GGTTGATGTCCATATAGAAA+TGG + chr6_1:98439557-98439576 None:intergenic 35.0%
TTTCTATATGGACATCAACC+GGG - chr6_1:98439557-98439576 Msa0901660:CDS 35.0%
! GGATCCTATTTTCATTATGC+AGG - chr6_1:98439604-98439623 Msa0901660:intron 35.0%
! TCCTATTTTCATTATGCAGG+AGG - chr6_1:98439607-98439626 Msa0901660:intron 35.0%
TCCTCCTGCATAATGAAAAT+AGG + chr6_1:98439611-98439630 None:intergenic 35.0%
GAAGCTTGTCCTAACAAAAT+GGG + chr6_1:98439671-98439690 None:intergenic 35.0%
TGAAGCTTGTCCTAACAAAA+TGG + chr6_1:98439672-98439691 None:intergenic 35.0%
!!! ACTTCTTTTTTTGTAGGCTG+TGG - chr6_1:98440105-98440124 Msa0901660:intron 35.0%
CTAGAGTACACAATGTACAT+AGG + chr6_1:98440160-98440179 None:intergenic 35.0%
CAGTAACTGCTGATATGTAA+AGG + chr6_1:98440233-98440252 None:intergenic 35.0%
ATATCAGCAGTTACTGTGAT+GGG - chr6_1:98440237-98440256 Msa0901660:intron 35.0%
TCTCTTGTCTTTATTGCACA+TGG + chr6_1:98440326-98440345 None:intergenic 35.0%
!!! GTTTTAGCTAATTTGCTCCA+AGG - chr6_1:98440410-98440429 Msa0901660:intron 35.0%
GTGACATAGACCTTTCTATA+GGG - chr6_1:98440544-98440563 Msa0901660:intron 35.0%
ATGATTGTGTCCCTATAGAA+AGG + chr6_1:98440557-98440576 None:intergenic 35.0%
! AGTTGGAGATACACTTTTGA+TGG - chr6_1:98440660-98440679 Msa0901660:CDS 35.0%
GATCATATTGATCTTTCGGA+GGG - chr6_1:98440682-98440701 Msa0901660:CDS 35.0%
ATGTGATAACACAAACTAGG+AGG + chr6_1:98440829-98440848 None:intergenic 35.0%
CCAATGTGATAACACAAACT+AGG + chr6_1:98440832-98440851 None:intergenic 35.0%
! CCTAGTTTGTGTTATCACAT+TGG - chr6_1:98440829-98440848 Msa0901660:CDS 35.0%
TACCAGTTGTGGCATGTTAT+TGG - chr6_1:98436613-98436632 Msa0901660:three_prime_UTR 40.0%
ACCAGTTGTGGCATGTTATT+GGG - chr6_1:98436614-98436633 Msa0901660:three_prime_UTR 40.0%
ATCACTAACATGTCTGCTTC+TGG - chr6_1:98436765-98436784 Msa0901660:intron 40.0%
TGACATACCTGATCAACAGA+GGG + chr6_1:98436831-98436850 None:intergenic 40.0%
GCACCTACACATCTTATCAA+AGG + chr6_1:98436993-98437012 None:intergenic 40.0%
GCTTCAAGAATCACTTCTTG+AGG + chr6_1:98437128-98437147 None:intergenic 40.0%
GGAAATTCTCCTCCTTAAAG+GGG + chr6_1:98437455-98437474 None:intergenic 40.0%
GCAGAATCTGATGACCTAAA+GGG + chr6_1:98437861-98437880 None:intergenic 40.0%
TGCAGAATCTGATGACCTAA+AGG + chr6_1:98437862-98437881 None:intergenic 40.0%
ATTGCTAGGTGGGAAAACTT+TGG + chr6_1:98437955-98437974 None:intergenic 40.0%
! TACTCCTGGAGTAAGCATTT+TGG - chr6_1:98437974-98437993 Msa0901660:intron 40.0%
AACTCGTTCTTGCTTGTATC+CGG + chr6_1:98438122-98438141 None:intergenic 40.0%
TACAAGCAAGAACGAGTTGT+AGG - chr6_1:98438124-98438143 Msa0901660:intron 40.0%
CAAGAACGAGTTGTAGGATT+AGG - chr6_1:98438130-98438149 Msa0901660:intron 40.0%
ATAGAAATTGTTGCTGCCGT+AGG - chr6_1:98438566-98438585 Msa0901660:intron 40.0%
GTACAAGTGATGCATGCTAT+TGG - chr6_1:98438720-98438739 Msa0901660:intron 40.0%
! AAATGTCAAGAGGCTTTGTC+AGG + chr6_1:98438943-98438962 None:intergenic 40.0%
ATGAATAGGATACTCAAGCC+AGG - chr6_1:98438971-98438990 Msa0901660:intron 40.0%
! ATCCATCCTCAGAACTTTTC+TGG - chr6_1:98439164-98439183 Msa0901660:intron 40.0%
AAGTGTCCAGAAAAGTTCTG+AGG + chr6_1:98439173-98439192 None:intergenic 40.0%
TATTGGTCCTGTACCTCTTA+TGG - chr6_1:98439464-98439483 Msa0901660:CDS 40.0%
! AATAGGACCATAAGAGGTAC+AGG + chr6_1:98439474-98439493 None:intergenic 40.0%
TTCTATATGGACATCAACCG+GGG - chr6_1:98439558-98439577 Msa0901660:CDS 40.0%
GCCGATCATGTTATGATTGT+TGG - chr6_1:98439583-98439602 Msa0901660:intron 40.0%
CAACATGGATGCATCAGAAA+TGG + chr6_1:98439787-98439806 None:intergenic 40.0%
GTGGATATATCTCCAAATCC+TGG - chr6_1:98440124-98440143 Msa0901660:intron 40.0%
CATATCAGCAGTTACTGTGA+TGG - chr6_1:98440236-98440255 Msa0901660:intron 40.0%
TATCAGCAGTTACTGTGATG+GGG - chr6_1:98440238-98440257 Msa0901660:intron 40.0%
GGTGACATAGACCTTTCTAT+AGG - chr6_1:98440543-98440562 Msa0901660:intron 40.0%
! GAGAGTGCATCATTAGTAGA+AGG + chr6_1:98440623-98440642 None:intergenic 40.0%
! AAGCTGACTTAGTACACAGT+TGG - chr6_1:98440643-98440662 Msa0901660:CDS 40.0%
GGATCATATTGATCTTTCGG+AGG - chr6_1:98440681-98440700 Msa0901660:CDS 40.0%
AGTATGTGGTGAACCAAGTT+AGG - chr6_1:98440743-98440762 Msa0901660:CDS 40.0%
ACAAACTAGGAGGACTACAT+TGG + chr6_1:98440819-98440838 None:intergenic 40.0%
TGGACTAAGGTTACCAGTTG+TGG - chr6_1:98436602-98436621 Msa0901660:three_prime_UTR 45.0%
CATGAAGAGGAAACAGTACG+AGG + chr6_1:98436657-98436676 None:intergenic 45.0%
AAGCCTAATAACATGCGACG+AGG + chr6_1:98436717-98436736 None:intergenic 45.0%
CGTCGCATGTTATTAGGCTT+TGG - chr6_1:98436717-98436736 Msa0901660:intron 45.0%
GCTTCTGCAAAAATAACCGC+TGG - chr6_1:98436804-98436823 Msa0901660:intron 45.0%
CTGACATACCTGATCAACAG+AGG + chr6_1:98436832-98436851 None:intergenic 45.0%
TCCTTAAAGGGGAATTGCTC+TGG + chr6_1:98437444-98437463 None:intergenic 45.0%
! AGAGCAATTCCCCTTTAAGG+AGG - chr6_1:98437443-98437462 Msa0901660:intron 45.0%
TCGATGTGTGTTACGAATCG+AGG + chr6_1:98437897-98437916 None:intergenic 45.0%
TAGTCAGAGCAGCAATTGCA+GGG + chr6_1:98437923-98437942 None:intergenic 45.0%
TTAGTCAGAGCAGCAATTGC+AGG + chr6_1:98437924-98437943 None:intergenic 45.0%
!! CTTACTCCAGGAGTATTGCT+AGG + chr6_1:98437969-98437988 None:intergenic 45.0%
ACTCGTTCTTGCTTGTATCC+GGG + chr6_1:98438121-98438140 None:intergenic 45.0%
AGAAAGAGGGTTGTCTTACC+GGG + chr6_1:98438183-98438202 None:intergenic 45.0%
CAGAAAGAGGGTTGTCTTAC+CGG + chr6_1:98438184-98438203 None:intergenic 45.0%
AACCCTCTTTCTGTGCTATG+TGG - chr6_1:98438191-98438210 Msa0901660:intron 45.0%
TGCCACATAGCACAGAAAGA+GGG + chr6_1:98438196-98438215 None:intergenic 45.0%
TTGCCACATAGCACAGAAAG+AGG + chr6_1:98438197-98438216 None:intergenic 45.0%
! CTGCGGCTTTATAGCATTGT+AGG + chr6_1:98438271-98438290 None:intergenic 45.0%
CTTGTACAGTATACTCCGTG+AGG + chr6_1:98438593-98438612 None:intergenic 45.0%
AATAGGATACTCAAGCCAGG+TGG - chr6_1:98438974-98438993 Msa0901660:intron 45.0%
!! GTCCAGAAAAGTTCTGAGGA+TGG + chr6_1:98439169-98439188 None:intergenic 45.0%
ACCCAAGCTCGATTACTCTT+TGG - chr6_1:98439329-98439348 Msa0901660:CDS 45.0%
GCCAAAGAGTAATCGAGCTT+GGG + chr6_1:98439333-98439352 None:intergenic 45.0%
TGCCAAAGAGTAATCGAGCT+TGG + chr6_1:98439334-98439353 None:intergenic 45.0%
ATCAGTGTGGGAATTACCTG+AGG + chr6_1:98439643-98439662 None:intergenic 45.0%
ATCAGAAATGGCTAGGTGTG+TGG + chr6_1:98439775-98439794 None:intergenic 45.0%
TGGATGCATCAGAAATGGCT+AGG + chr6_1:98439782-98439801 None:intergenic 45.0%
GTGACATTGTACCAATGCTG+AGG - chr6_1:98440074-98440093 Msa0901660:intron 45.0%
AGTTACATGAGCCTCAGCAT+TGG + chr6_1:98440088-98440107 None:intergenic 45.0%
TTCGGAGGGTCACTATGAAA+TGG - chr6_1:98440696-98440715 Msa0901660:CDS 45.0%
!!! TTTTAATTAAATTTAAGTAT+TGG + chr6_1:98438477-98438496 None:intergenic 5.0%
GCCCAATAACATGCCACAAC+TGG + chr6_1:98436618-98436637 None:intergenic 50.0%
ACAGTACGAGGATGTGGTGT+GGG + chr6_1:98436645-98436664 None:intergenic 50.0%
AACAGTACGAGGATGTGGTG+TGG + chr6_1:98436646-98436665 None:intergenic 50.0%
GAGGAAACAGTACGAGGATG+TGG + chr6_1:98436651-98436670 None:intergenic 50.0%
GCTCCTCGTCGCATGTTATT+AGG - chr6_1:98436711-98436730 Msa0901660:intron 50.0%
AATTACATGCGTCGTCGGTG+TGG - chr6_1:98436956-98436975 Msa0901660:intron 50.0%
! GGTATAGTGGGATGGGACAA+AGG + chr6_1:98437391-98437410 None:intergenic 50.0%
GCCAGAGCAATTCCCCTTTA+AGG - chr6_1:98437440-98437459 Msa0901660:intron 50.0%
TTCCCACCTAGCAATACTCC+TGG - chr6_1:98437960-98437979 Msa0901660:intron 50.0%
!! CTCCAGGAGTATTGCTAGGT+GGG + chr6_1:98437965-98437984 None:intergenic 50.0%
!! ACTCCAGGAGTATTGCTAGG+TGG + chr6_1:98437966-98437985 None:intergenic 50.0%
!! TAGGTCAGCCATTTTCCACC+CGG - chr6_1:98438100-98438119 Msa0901660:intron 50.0%
GCTTGTATCCGGGTGGAAAA+TGG + chr6_1:98438111-98438130 None:intergenic 50.0%
AAGACTTCGATAGCGCATCG+TGG - chr6_1:98438306-98438325 Msa0901660:intron 50.0%
GTATACTCCGTGAGGACCTA+CGG + chr6_1:98438585-98438604 None:intergenic 50.0%
GATACTCAAGCCAGGTGGAT+TGG - chr6_1:98438979-98438998 Msa0901660:intron 50.0%
CTCATTATGGCCAATCCACC+TGG + chr6_1:98438992-98439011 None:intergenic 50.0%
!! CAGGTGGATTGGCCATAATG+AGG - chr6_1:98438990-98439009 Msa0901660:intron 50.0%
CATAACATGATCGGCATCCC+CGG + chr6_1:98439578-98439597 None:intergenic 50.0%
AGGAGGATTTGAACCTCCTC+AGG - chr6_1:98439624-98439643 Msa0901660:intron 50.0%
AGTGTGGGAATTACCTGAGG+AGG + chr6_1:98439640-98439659 None:intergenic 50.0%
AAATGGCTAGGTGTGTGGAG+AGG + chr6_1:98439770-98439789 None:intergenic 50.0%
ATCTCCAAATCCTGGACGCT+CGG - chr6_1:98440132-98440151 Msa0901660:intron 50.0%
CTGATCAACAGAGGGACCAG+CGG + chr6_1:98436823-98436842 None:intergenic 55.0%
! GTTCGACTTCTAAAGGGGCC+AGG - chr6_1:98437038-98437057 Msa0901660:intron 55.0%
CGTTCTTGCTTGTATCCGGG+TGG + chr6_1:98438118-98438137 None:intergenic 55.0%
TACATAGGATCCGAGCGTCC+AGG + chr6_1:98440145-98440164 None:intergenic 55.0%
ACGAGGATGTGGTGTGGGTG+TGG + chr6_1:98436640-98436659 None:intergenic 60.0%
CGCTGGTCCCTCTGTTGATC+AGG - chr6_1:98436821-98436840 Msa0901660:intron 60.0%
GTTGCTGCCGTAGGTCCTCA+CGG - chr6_1:98438575-98438594 Msa0901660:intron 60.0%
GGATCCGAGCGTCCAGGATT+TGG + chr6_1:98440139-98440158 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 98436511 98440942 98436511 ID=Msa0901660;Name=Msa0901660
chr6_1 mRNA 98436511 98440942 98436511 ID=Msa0901660-mRNA-1;Parent=Msa0901660;Name=Msa0901660-mRNA-1;_AED=0.11;_eAED=0.11;_QI=77|1|1|1|0.87|0.77|9|238|307
chr6_1 exon 98436511 98436664 98436511 ID=Msa0901660-mRNA-1:exon:17375;Parent=Msa0901660-mRNA-1
chr6_1 exon 98437171 98437332 98437171 ID=Msa0901660-mRNA-1:exon:17374;Parent=Msa0901660-mRNA-1
chr6_1 exon 98437808 98437928 98437808 ID=Msa0901660-mRNA-1:exon:17373;Parent=Msa0901660-mRNA-1
chr6_1 exon 98438442 98438527 98438442 ID=Msa0901660-mRNA-1:exon:17372;Parent=Msa0901660-mRNA-1
chr6_1 exon 98438779 98438865 98438779 ID=Msa0901660-mRNA-1:exon:17371;Parent=Msa0901660-mRNA-1
chr6_1 exon 98439270 98439350 98439270 ID=Msa0901660-mRNA-1:exon:17370;Parent=Msa0901660-mRNA-1
chr6_1 exon 98439440 98439587 98439440 ID=Msa0901660-mRNA-1:exon:17369;Parent=Msa0901660-mRNA-1
chr6_1 exon 98439966 98440033 98439966 ID=Msa0901660-mRNA-1:exon:17368;Parent=Msa0901660-mRNA-1
chr6_1 exon 98440611 98440942 98440611 ID=Msa0901660-mRNA-1:exon:17367;Parent=Msa0901660-mRNA-1
chr6_1 five_prime_UTR 98440866 98440942 98440866 ID=Msa0901660-mRNA-1:five_prime_utr;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98440611 98440865 98440611 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98439966 98440033 98439966 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98439440 98439587 98439440 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98439270 98439350 98439270 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98438779 98438865 98438779 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98438442 98438527 98438442 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98437808 98437928 98437808 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 CDS 98437255 98437332 98437255 ID=Msa0901660-mRNA-1:cds;Parent=Msa0901660-mRNA-1
chr6_1 three_prime_UTR 98437171 98437254 98437171 ID=Msa0901660-mRNA-1:three_prime_utr;Parent=Msa0901660-mRNA-1
chr6_1 three_prime_UTR 98436511 98436664 98436511 ID=Msa0901660-mRNA-1:three_prime_utr;Parent=Msa0901660-mRNA-1
Gene Sequence

>Msa0901660

ATGACCAATTTTGTTGGACTAAGGTTACCAGTTGTGGCATGTTATTGGGCCACACCCACACCACATCCTCGTACTGTTTCCTCTTCATGTTCTTCTCTATTATTAAACAAGACATTTAAGAATGCTCCTCGTCGCATGTTATTAGGCTTTGGAGCATCTTCATTCTTGTCTCACTTTATCACTAACATGTCTGCTTCTGGTTTCAAATCCTTCATTGCTTCTGCAAAAATAACCGCTGGTCCCTCTGTTGATCAGATATTGAAGAATGTGGAATGGCCAGAGCAATTCCCCTTTAAGGAGGAGAATTTCCAACGTTATGATGAGTCATCAGATTCTGCATTCTATGAGTCACCTCGATTCGTAACACACATCGATGACCCTGCAATTGCTGCTCTGACTAAGTATTACTCCAAAGTTTTCCCACCTAGCAATACTCCTGGAGTAAGCATTTTGGATATGTGTAGCAGTTGGGTCAGCCATTTTCCACCCGGATACAAGCAAGAACGAGTTGTAGGATTAGGCCTGAATGAAGAAGAATTGAAGAGAAACCCGGTCCTCACGGAGTATACTGTACAAGACTTAAATGTGAACCCTAAACTCTCATTTGAAGATAACTCTTTCGATGTCATCACTAATGTGGTCAGTGTTGACTACCTGACAAAGCCTCTTGACATTTTCATGGAGATGAATAGGATACTCAAGCCAGGTGGATTGGCCATAATGAGTTTTTCAAACAGATGCTTCTTTACAAAAGCCATTTCTATATGGACATCAACCGGGGATGCCGATCATGTTATGATTGTTGGATCCTATTTTCATTATGCAGGAGGATTTGAACCTCCTCAGGCTGTGGATATATCTCCAAATCCTGGACGCTCGGATCCTATGTACATTGTGTACTCTAGAAAACTTGCTACCGCTTAA

Protein sequence

>Msa0901660

MTNFVGLRLPVVACYWATPTPHPRTVSSSCSSLLLNKTFKNAPRRMLLGFGASSFLSHFITNMSASGFKSFIASAKITAGPSVDQILKNVEWPEQFPFKEENFQRYDESSDSAFYESPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSSWVSHFPPGYKQERVVGLGLNEEELKRNPVLTEYTVQDLNVNPKLSFEDNSFDVITNVVSVDYLTKPLDIFMEMNRILKPGGLAIMSFSNRCFFTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRKLATA*