AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927190 MtrunA17_Chr6g0485671 95.261 422 20 0 28 449 28 449 0.0 835
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927190 AT5G19540.1 70.180 389 112 3 67 451 70 458 0.0 573
Msa0927190 AT5G19540.2 70.180 389 112 3 67 451 70 458 0.0 573

Find 118 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGATTGCCATACTTTA+TGG 0.078842 6_2:-71375432 Msa0927190:CDS
CTTGACAACGCCTCTATTTC+CGG 0.201374 6_2:+71376172 None:intergenic
TCATCAGTTCAACAAGAAAA+TGG 0.213471 6_2:-71379502 Msa0927190:CDS
TGGCGGTGGATCTGTGGTTT+TGG 0.230954 6_2:-71375203 Msa0927190:CDS
GGTAATTGAGACAATCTAAT+TGG 0.268697 6_2:+71376574 None:intergenic
AAGACAGTGGCCAGGGCTTC+AGG 0.273860 6_2:-71375279 Msa0927190:CDS
GAATTTGAGCCATCTGTCTT+TGG 0.275727 6_2:+71376610 None:intergenic
AACACAAAACCTGGAGTAAT+TGG 0.285630 6_2:+71376508 None:intergenic
CGTAGGACTCAAGCTCCTTC+TGG 0.285730 6_2:+71376751 None:intergenic
TCAATTACCAGTCTGAAAAT+TGG 0.290529 6_2:-71376560 Msa0927190:CDS
GAATTTGAAAAGGGTGGTTT+TGG 0.293134 6_2:+71379553 None:intergenic
AATTATTACCATATGATTTA+CGG 0.294473 6_2:-71374846 Msa0927190:three_prime_UTR
ACCTCTTTGGGGCATGGAAA+TGG 0.304134 6_2:-71374955 Msa0927190:three_prime_UTR
AAACGCTTCCGATGAGAAAA+AGG 0.312911 6_2:+71376227 None:intergenic
TCTTCGGTACCACGGTGAAT+TGG 0.317020 6_2:-71375173 Msa0927190:CDS
GCTCTTAAAACTTTGAGAAA+TGG 0.323854 6_2:+71374979 None:intergenic
ATAAGATTGCCATACTTTAT+GGG 0.348638 6_2:-71375431 Msa0927190:CDS
TTAAAAGATGATATGATCAT+TGG 0.353086 6_2:-71375109 Msa0927190:exon
CTCCATGGATCAAGATCTTC+CGG 0.359668 6_2:+71376298 None:intergenic
CTCTTAAAACTTTGAGAAAT+GGG 0.360056 6_2:+71374980 None:intergenic
CGATTGTGTCCTTTATGAAA+TGG 0.381202 6_2:-71376730 Msa0927190:CDS
CTTCGGTACCACGGTGAATT+GGG 0.392853 6_2:-71375172 Msa0927190:CDS
CTCAATCTCCTTCCGAGATC+CGG 0.412651 6_2:+71375396 None:intergenic
CCTCTTTGGGGCATGGAAAT+GGG 0.413369 6_2:-71374954 Msa0927190:three_prime_UTR
GTACTTCCTATGCCGCTTGT+TGG 0.414173 6_2:-71376250 Msa0927190:CDS
ATGCATGTAATCATAAGAAA+TGG 0.414753 6_2:-71374928 Msa0927190:three_prime_UTR
TGCTAGCTACCATTTCATAA+AGG 0.415690 6_2:+71376721 None:intergenic
AAGAAAAGAAGGAAAAGCTT+TGG 0.417455 6_2:+71379585 None:intergenic
AATGTTGCAGCCTTCGATTC+CGG 0.423808 6_2:-71376317 Msa0927190:CDS
AAAGGGATTGATGGTTCTAC+TGG 0.424242 6_2:-71379424 Msa0927190:CDS
GGAAAAGCTTTGGAAGTTGA+TGG 0.433291 6_2:+71379595 None:intergenic
GTTTGTAAAAGATGTCTTGT+TGG 0.434246 6_2:-71374761 Msa0927190:three_prime_UTR
GATATAAGAAGAAGTTTCCT+TGG 0.434374 6_2:-71379378 Msa0927190:CDS
TTGCTTTGTAGAAACTGTTC+TGG 0.435673 6_2:+71379475 None:intergenic
CGTTTCTGAAGACAGTGGCC+AGG 0.441159 6_2:-71375287 Msa0927190:CDS
GTGTTGTACTATGATGTTGT+TGG 0.444714 6_2:+71379691 None:intergenic
AGGTTCAAGAAAGGGATTGA+TGG 0.445776 6_2:-71379433 Msa0927190:CDS
GAGGAGAAATCTGTTATAAT+CGG 0.448667 6_2:-71375510 Msa0927190:CDS
GGAAATCCAACAAGAAAAGA+AGG 0.449183 6_2:+71379574 None:intergenic
GGTGGCCACATGCCGGATCT+CGG 0.452902 6_2:-71375408 Msa0927190:CDS
CATCAGTTCAACAAGAAAAT+GGG 0.455409 6_2:-71379501 Msa0927190:CDS
ATGTTACCACAGAAATTCTT+CGG 0.470066 6_2:-71375143 Msa0927190:CDS
TTTGTAAAAGATGTCTTGTT+GGG 0.476037 6_2:-71374760 Msa0927190:three_prime_UTR
CTTGTGAACCGTAAATCATA+TGG 0.477047 6_2:+71374838 None:intergenic
AAGTCCAGCATCAGAATATC+CGG 0.478469 6_2:-71376191 Msa0927190:CDS
GGGTAACAGCTTGGTCCATA+AGG 0.478495 6_2:-71375338 Msa0927190:CDS
TTTGAGGGTGGAATTTGAAA+AGG 0.479151 6_2:+71379543 None:intergenic
CGGATCTCGGAAGGAGATTG+AGG 0.480710 6_2:-71375395 Msa0927190:CDS
CGGAAGCGTTTGTGCAAATG+TGG 0.481614 6_2:-71376215 Msa0927190:CDS
CAGCTTGGTCCATAAGGAAA+AGG 0.483406 6_2:-71375332 Msa0927190:CDS
AGAGCTACCTCTTTGGGGCA+TGG 0.486812 6_2:-71374961 Msa0927190:three_prime_UTR
ATTTCATGAGGTTCAAGAAA+GGG 0.490455 6_2:-71379441 Msa0927190:CDS
ATTTCCGGATATTCTGATGC+TGG 0.491392 6_2:+71376187 None:intergenic
TGATGTAAGTGCTGCTATGA+AGG 0.492495 6_2:-71376146 Msa0927190:CDS
TGAGACCTTCCAATTACTCC+AGG 0.492747 6_2:-71376517 Msa0927190:intron
TTGAGGGTGGAATTTGAAAA+GGG 0.494338 6_2:+71379544 None:intergenic
AAAAGGCCAACAAGCGGCAT+AGG 0.495123 6_2:+71376244 None:intergenic
CTGGCCACTGTCTTCAGAAA+CGG 0.497502 6_2:+71375288 None:intergenic
TTATGAAATGGTAGCTAGCA+AGG 0.507890 6_2:-71376718 Msa0927190:CDS
GAGTTCGATTTAGTCCCGTC+TGG 0.510649 6_2:-71375369 Msa0927190:CDS
ACTCAAGTGTTCTACATATG+TGG 0.513154 6_2:-71374902 Msa0927190:three_prime_UTR
TAAGATTGCCATACTTTATG+GGG 0.513897 6_2:-71375430 Msa0927190:CDS
CAACGGCCAACCTGAAGCCC+TGG 0.516595 6_2:+71375269 None:intergenic
ATCAGAATATCCGGAAATAG+AGG 0.519580 6_2:-71376182 Msa0927190:CDS
ACGCAGTAACATAGTAAACT+TGG 0.534003 6_2:+71374811 None:intergenic
GTTTCTGAAGACAGTGGCCA+GGG 0.542598 6_2:-71375286 Msa0927190:CDS
GATTTCATGAGGTTCAAGAA+AGG 0.544931 6_2:-71379442 Msa0927190:CDS
CAATCTTGGCGGTGGATCTG+TGG 0.546535 6_2:-71375209 Msa0927190:CDS
CGGAAATAGAGGCGTTGTCA+AGG 0.546770 6_2:-71376171 Msa0927190:CDS
GTAAAGCTTGACACAAAATA+CGG 0.549495 6_2:-71375541 Msa0927190:intron
ACAGAAATTCTTCGGTATGT+TGG 0.549627 6_2:-71375135 Msa0927190:CDS
AGAGAATATGAGAAACCCTA+TGG 0.555242 6_2:-71376688 Msa0927190:CDS
CGATTTAGTCCCGTCTGGTG+TGG 0.555780 6_2:-71375364 Msa0927190:CDS
GAACCTCATGAAATCTGCAA+TGG 0.556856 6_2:+71379450 None:intergenic
TTCCGGAAGATCTTGATCCA+TGG 0.559662 6_2:-71376300 Msa0927190:CDS
TAGTCCCGTCTGGTGTGGAG+TGG 0.563205 6_2:-71375359 Msa0927190:CDS
GTTGAACCGTTATCAGACAT+TGG 0.564903 6_2:-71375250 Msa0927190:CDS
CCCATTTCCATGCCCCAAAG+AGG 0.566399 6_2:+71374954 None:intergenic
GCCACATGCCGGATCTCGGA+AGG 0.567733 6_2:-71375404 Msa0927190:CDS
ACAAAATACGGCAGATGTGG+AGG 0.568405 6_2:-71375529 Msa0927190:CDS
CATAAAAGCTTGGATCTCCA+TGG 0.568942 6_2:+71376283 None:intergenic
GGATCTCGGAAGGAGATTGA+GGG 0.569864 6_2:-71375394 Msa0927190:CDS
GCAAAGCCAATGTCTGATAA+CGG 0.573019 6_2:+71375244 None:intergenic
CCTCAAAAGAGCAATGGACA+AGG 0.574667 6_2:-71375460 Msa0927190:CDS
AGGACTCAAGCTCCTTCTGG+AGG 0.576534 6_2:+71376754 None:intergenic
AGGGTGGAATTTGAAAAGGG+TGG 0.581692 6_2:+71379547 None:intergenic
TCAAGATCTTCCGGAATCGA+AGG 0.584753 6_2:+71376307 None:intergenic
AAAGATGTCTTGTTGGGTGA+AGG 0.587301 6_2:-71374754 None:intergenic
CGAGAACCTCAAAAGAGCAA+TGG 0.588813 6_2:-71375466 Msa0927190:CDS
AATGAAGATGATGATGATGA+AGG 0.589533 6_2:+71379631 None:intergenic
GTGTGGAGTGGGTAACAGCT+TGG 0.589810 6_2:-71375347 Msa0927190:CDS
AGTCCCGTCTGGTGTGGAGT+GGG 0.591895 6_2:-71375358 Msa0927190:CDS
GACACAAAATACGGCAGATG+TGG 0.592912 6_2:-71375532 Msa0927190:CDS
ATTCCATTGCAGATTTCATG+AGG 0.598572 6_2:-71379453 Msa0927190:CDS
AATGTCTGATAACGGTTCAA+CGG 0.600103 6_2:+71375252 None:intergenic
CGGATGTTAGTCTCTTTGCA+AGG 0.600216 6_2:+71376119 None:intergenic
ACGTGAAGCCCATAAAAGCT+TGG 0.603332 6_2:+71376273 None:intergenic
TTACCCACTCCACACCAGAC+GGG 0.604590 6_2:+71375355 None:intergenic
TATGACTCTTAGATCTACAA+AGG 0.610478 6_2:-71376341 Msa0927190:CDS
TCCTTCCGAGATCCGGCATG+TGG 0.610617 6_2:+71375403 None:intergenic
GTCTTGTGTAAAAGCTGTCA+TGG 0.611887 6_2:-71374790 Msa0927190:three_prime_UTR
GACAGATGGCTCAAATTCTG+AGG 0.616056 6_2:-71376605 Msa0927190:CDS
GGAGCTATTCTTCGGTACCA+CGG 0.617266 6_2:-71375181 Msa0927190:CDS
TGGATGCATCCAAAGACAGA+TGG 0.619679 6_2:-71376619 Msa0927190:CDS
AAAGGCTTCAAAAGAGACCA+AGG 0.623114 6_2:+71379361 None:intergenic
CAGTGGCCAGGGCTTCAGGT+TGG 0.625647 6_2:-71375275 Msa0927190:CDS
TTAAAAGGGTCACAAACTAG+AGG 0.626353 6_2:-71376654 Msa0927190:CDS
CAAAACCTGGAGTAATTGGA+AGG 0.627573 6_2:+71376512 None:intergenic
GGACTCAAGCTCCTTCTGGA+GGG 0.634976 6_2:+71376755 None:intergenic
GTTACCCACTCCACACCAGA+CGG 0.637773 6_2:+71375354 None:intergenic
AACATACCGAAGAATTTCTG+TGG 0.646117 6_2:+71375137 None:intergenic
GGAAGCGTTTGTGCAAATGT+GGG 0.646979 6_2:-71376214 Msa0927190:CDS
AAGATTGCCATACTTTATGG+GGG 0.660170 6_2:-71375429 Msa0927190:CDS
CTCAAAAGAGCAATGGACAA+GGG 0.666275 6_2:-71375459 Msa0927190:CDS
TCTCGGAAGGAGATTGAGGG+AGG 0.670087 6_2:-71375391 Msa0927190:CDS
ACTTCCGTTTCTGAAGACAG+TGG 0.695232 6_2:-71375292 Msa0927190:CDS
TTCATAAAGGACACAATCGT+AGG 0.698872 6_2:+71376734 None:intergenic
ATCAGAGACCCAATTCACCG+TGG 0.790349 6_2:+71375164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGAAATTTTATGAAAAT+TGG - chr6_2:71376225-71376244 Msa0927190:CDS 10.0%
!!! TTATGTTCAAATTTTTATTT+AGG - chr6_2:71376779-71376798 Msa0927190:intron 10.0%
!! TTATTATGAACTAAATATTT+CGG + chr6_2:71376904-71376923 None:intergenic 10.0%
!!! ATATTTAGTTCATAATAAAA+TGG - chr6_2:71376906-71376925 Msa0927190:intron 10.0%
!!! TTTCTTGTTTTTTCTTAATT+GGG - chr6_2:71375174-71375193 Msa0927190:CDS 15.0%
!!! TTTTGTTTTTTTGTTTAGAA+TGG - chr6_2:71375201-71375220 Msa0927190:CDS 15.0%
!! TAAACATTTATGTAAGTATT+TGG + chr6_2:71376302-71376321 None:intergenic 15.0%
!! AATTATTACCATATGATTTA+CGG - chr6_2:71379639-71379658 Msa0927190:CDS 15.0%
!!! AAAACAAGTTTTGATTTTGA+GGG + chr6_2:71374960-71374979 None:intergenic 20.0%
!!! CTTTCTTGTTTTTTCTTAAT+TGG - chr6_2:71375173-71375192 Msa0927190:CDS 20.0%
!!! TTGTAATTTTTTTTCCCTTT+TGG - chr6_2:71375313-71375332 Msa0927190:CDS 20.0%
!!! TTAAGTTGTTTATCCAAAAA+GGG + chr6_2:71375361-71375380 None:intergenic 20.0%
!! TTACAATCAAAGTTAAAATG+AGG - chr6_2:71376158-71376177 Msa0927190:CDS 20.0%
!! GAAAGATTATGAAGAATTAT+GGG - chr6_2:71376580-71376599 Msa0927190:CDS 20.0%
!!! ATAGTTTTAGATATTTATGC+AGG - chr6_2:71376683-71376702 Msa0927190:CDS 20.0%
!! TGTACATCTATTGATATTAT+TGG - chr6_2:71376811-71376830 Msa0927190:intron 20.0%
!!! AATATCTCCTATTAGTTTAT+AGG - chr6_2:71378665-71378684 Msa0927190:intron 20.0%
!! TTAAAAGATGATATGATCAT+TGG - chr6_2:71379376-71379395 Msa0927190:CDS 20.0%
! ATCATAGTACAACACAAAAA+TGG - chr6_2:71374802-71374821 Msa0927190:three_prime_UTR 25.0%
!!! CAAAACAAGTTTTGATTTTG+AGG + chr6_2:71374961-71374980 None:intergenic 25.0%
! TTTAAACCAACCTGAAAAAA+AGG + chr6_2:71375145-71375164 None:intergenic 25.0%
!!! TTTTTTTCCCTTTTGGAATT+TGG - chr6_2:71375320-71375339 Msa0927190:CDS 25.0%
! AAAACTACCAAATTCCAAAA+GGG + chr6_2:71375330-71375349 None:intergenic 25.0%
! TAAAACTACCAAATTCCAAA+AGG + chr6_2:71375331-71375350 None:intergenic 25.0%
!! CTTAAGTTGTTTATCCAAAA+AGG + chr6_2:71375362-71375381 None:intergenic 25.0%
! TCTGTTTCCTTATTAGTTAT+AGG - chr6_2:71375435-71375454 Msa0927190:CDS 25.0%
! TATTTATATGTTGTTGACCA+TGG - chr6_2:71375833-71375852 Msa0927190:intron 25.0%
! AAATCAATCAGCGAAAAAAA+GGG + chr6_2:71375913-71375932 None:intergenic 25.0%
! AAAATCAATCAGCGAAAAAA+AGG + chr6_2:71375914-71375933 None:intergenic 25.0%
!!! TTTTTTCGCTGATTGATTTT+TGG - chr6_2:71375914-71375933 Msa0927190:intron 25.0%
! TTTCAGTAATGTTATTAGTG+TGG - chr6_2:71376067-71376086 Msa0927190:intron 25.0%
! TTCAGTAATGTTATTAGTGT+GGG - chr6_2:71376068-71376087 Msa0927190:intron 25.0%
! GGAAAGATTATGAAGAATTA+TGG - chr6_2:71376579-71376598 Msa0927190:CDS 25.0%
!!! TTGATATTATTGGTGATGAT+CGG - chr6_2:71376821-71376840 Msa0927190:intron 25.0%
! AATAATATTAGCTGTACCTT+TGG - chr6_2:71377050-71377069 Msa0927190:intron 25.0%
! GATAAATATGATTCTCACAT+CGG - chr6_2:71377192-71377211 Msa0927190:intron 25.0%
! AATACCTGCTCATAAAAATT+AGG + chr6_2:71377704-71377723 None:intergenic 25.0%
!!! TTAACCTTTTTTTAGCCATA+GGG + chr6_2:71377815-71377834 None:intergenic 25.0%
!!! TTTAACCTTTTTTTAGCCAT+AGG + chr6_2:71377816-71377835 None:intergenic 25.0%
! ATGGCTAAAAAAAGGTTAAA+AGG - chr6_2:71377816-71377835 Msa0927190:intron 25.0%
! TGGCTAAAAAAAGGTTAAAA+GGG - chr6_2:71377817-71377836 Msa0927190:intron 25.0%
!!! ACTAGAGGTTTTAACATTAT+TGG - chr6_2:71377846-71377865 Msa0927190:intron 25.0%
!!! TTTTTATTTCAGCAAGCAAA+AGG - chr6_2:71378094-71378113 Msa0927190:intron 25.0%
! GAGTTTGTATAAATTTGTAC+TGG + chr6_2:71378414-71378433 None:intergenic 25.0%
! TTTATCATCAATACTCAAGT+TGG + chr6_2:71378915-71378934 None:intergenic 25.0%
! AATAAGATTGCCATACTTTA+TGG - chr6_2:71379053-71379072 Msa0927190:intron 25.0%
! ATAAGATTGCCATACTTTAT+GGG - chr6_2:71379054-71379073 Msa0927190:intron 25.0%
!! CTCTTAAAACTTTGAGAAAT+GGG + chr6_2:71379508-71379527 None:intergenic 25.0%
! ATGCATGTAATCATAAGAAA+TGG - chr6_2:71379557-71379576 Msa0927190:CDS 25.0%
!! TTTGTAAAAGATGTCTTGTT+GGG - chr6_2:71379725-71379744 Msa0927190:five_prime_UTR 25.0%
! AATGAAGATGATGATGATGA+AGG + chr6_2:71374857-71374876 None:intergenic 30.0%
AAGAAAAGAAGGAAAAGCTT+TGG + chr6_2:71374903-71374922 None:intergenic 30.0%
TCATCAGTTCAACAAGAAAA+TGG - chr6_2:71374983-71375002 Msa0927190:three_prime_UTR 30.0%
CATCAGTTCAACAAGAAAAT+GGG - chr6_2:71374984-71375003 Msa0927190:three_prime_UTR 30.0%
ATTTCATGAGGTTCAAGAAA+GGG - chr6_2:71375044-71375063 Msa0927190:three_prime_UTR 30.0%
GATATAAGAAGAAGTTTCCT+TGG - chr6_2:71375107-71375126 Msa0927190:three_prime_UTR 30.0%
!!! TCTTTTGAAGCCTTTTTTTC+AGG - chr6_2:71375132-71375151 Msa0927190:CDS 30.0%
GAAACAGCCTATAACTAATA+AGG + chr6_2:71375445-71375464 None:intergenic 30.0%
AGACAATACATACTCTTCAT+CGG + chr6_2:71375884-71375903 None:intergenic 30.0%
!! TAGTTTTCAAGAGCAACTTA+AGG - chr6_2:71375943-71375962 Msa0927190:intron 30.0%
ATCCAACAAAAGAAATGGAT+AGG + chr6_2:71376451-71376470 None:intergenic 30.0%
! ATCCATTTCTTTTGTTGGAT+AGG - chr6_2:71376451-71376470 Msa0927190:intron 30.0%
ATTATCATCCTGACATTCAA+CGG - chr6_2:71376938-71376957 Msa0927190:intron 30.0%
! ATTTTGTGAAGTCACGAATA+TGG - chr6_2:71377130-71377149 Msa0927190:intron 30.0%
! CTTAAGAGCATAAATCCAAA+GGG + chr6_2:71377291-71377310 None:intergenic 30.0%
! TCTTAAGAGCATAAATCCAA+AGG + chr6_2:71377292-71377311 None:intergenic 30.0%
ACTTCACTTAACTTCTTCAA+TGG + chr6_2:71377395-71377414 None:intergenic 30.0%
ACATTTAAGTCTCACTTCTT+AGG + chr6_2:71377510-71377529 None:intergenic 30.0%
AAGTGAGACTTAAATGTCAA+AGG - chr6_2:71377513-71377532 Msa0927190:intron 30.0%
AGTGAGACTTAAATGTCAAA+GGG - chr6_2:71377514-71377533 Msa0927190:intron 30.0%
TAAAAGTTAATACTGCTTCG+AGG + chr6_2:71377670-71377689 None:intergenic 30.0%
! TGATCCTAATTTTTATGAGC+AGG - chr6_2:71377697-71377716 Msa0927190:intron 30.0%
! TTTTATGAGCAGGTATTTTC+TGG - chr6_2:71377707-71377726 Msa0927190:intron 30.0%
GGTAATTGAGACAATCTAAT+TGG + chr6_2:71377914-71377933 None:intergenic 30.0%
TCAATTACCAGTCTGAAAAT+TGG - chr6_2:71377925-71377944 Msa0927190:intron 30.0%
AAAATTAGCAACACAAAACC+TGG + chr6_2:71377989-71378008 None:intergenic 30.0%
TATGACTCTTAGATCTACAA+AGG - chr6_2:71378144-71378163 Msa0927190:intron 30.0%
!!! TTGTCATTTTAGTGCATGTT+TGG - chr6_2:71378475-71378494 Msa0927190:intron 30.0%
GTAAAGCTTGACACAAAATA+CGG - chr6_2:71378944-71378963 Msa0927190:intron 30.0%
GAGGAGAAATCTGTTATAAT+CGG - chr6_2:71378975-71378994 Msa0927190:intron 30.0%
TAAGATTGCCATACTTTATG+GGG - chr6_2:71379055-71379074 Msa0927190:intron 30.0%
! ATCAAGTTTCCTTTTCCTTA+TGG + chr6_2:71379165-71379184 None:intergenic 30.0%
ATGTTACCACAGAAATTCTT+CGG - chr6_2:71379342-71379361 Msa0927190:intron 30.0%
! GCTCTTAAAACTTTGAGAAA+TGG + chr6_2:71379509-71379528 None:intergenic 30.0%
GTTTGTAAAAGATGTCTTGT+TGG - chr6_2:71379724-71379743 Msa0927190:five_prime_UTR 30.0%
! ATGTTGTTGGATTTTGTTGC+AGG + chr6_2:71374784-71374803 None:intergenic 35.0%
GTGTTGTACTATGATGTTGT+TGG + chr6_2:71374797-71374816 None:intergenic 35.0%
! GCTTTTCCTTCTTTTCTTGT+TGG - chr6_2:71374905-71374924 Msa0927190:three_prime_UTR 35.0%
GGAAATCCAACAAGAAAAGA+AGG + chr6_2:71374914-71374933 None:intergenic 35.0%
! GAATTTGAAAAGGGTGGTTT+TGG + chr6_2:71374935-71374954 None:intergenic 35.0%
TTGAGGGTGGAATTTGAAAA+GGG + chr6_2:71374944-71374963 None:intergenic 35.0%
TTTGAGGGTGGAATTTGAAA+AGG + chr6_2:71374945-71374964 None:intergenic 35.0%
!!! ACAAGTTTTGATTTTGAGGG+TGG + chr6_2:71374957-71374976 None:intergenic 35.0%
TTGCTTTGTAGAAACTGTTC+TGG + chr6_2:71375013-71375032 None:intergenic 35.0%
ATTCCATTGCAGATTTCATG+AGG - chr6_2:71375032-71375051 Msa0927190:three_prime_UTR 35.0%
GATTTCATGAGGTTCAAGAA+AGG - chr6_2:71375043-71375062 Msa0927190:three_prime_UTR 35.0%
!!! TTGAAGCCTTTTTTTCAGGT+TGG - chr6_2:71375136-71375155 Msa0927190:CDS 35.0%
!!! GTTTTAGCTTAGTCCCTTTT+TGG - chr6_2:71375345-71375364 Msa0927190:CDS 35.0%
TATGGAAATAAGCAGAAAGC+AGG - chr6_2:71375486-71375505 Msa0927190:CDS 35.0%
!! AGACTGTTCAAGAGAGTATT+TGG + chr6_2:71375536-71375555 None:intergenic 35.0%
TATATGTTGTTGACCATGGA+TGG - chr6_2:71375837-71375856 Msa0927190:intron 35.0%
GATGGTAGCTGTAACATAAT+TGG - chr6_2:71375855-71375874 Msa0927190:intron 35.0%
!! CGCTGATTGATTTTTGGATT+TGG - chr6_2:71375920-71375939 Msa0927190:intron 35.0%
! AGAGCAACTTAAGGTTTGTT+TGG - chr6_2:71375952-71375971 Msa0927190:intron 35.0%
! AGCCTATCCATTTCTTTTGT+TGG - chr6_2:71376446-71376465 Msa0927190:intron 35.0%
AGCCTATCCAACAAAAGAAA+TGG + chr6_2:71376456-71376475 None:intergenic 35.0%
AGTCTTAAATCCAAACACTC+TGG - chr6_2:71376490-71376509 Msa0927190:intron 35.0%
GTTAGGCAGCAAAGAAATTT+GGG - chr6_2:71376517-71376536 Msa0927190:intron 35.0%
AAGAAATTTGGGTATGGATG+AGG - chr6_2:71376528-71376547 Msa0927190:CDS 35.0%
AGAAATTTGGGTATGGATGA+GGG - chr6_2:71376529-71376548 Msa0927190:CDS 35.0%
!!! ACAATTCACAGGGTTTTTTG+AGG - chr6_2:71376558-71376577 Msa0927190:CDS 35.0%
AAATCAATCATGAGAACAGG+TGG - chr6_2:71376603-71376622 Msa0927190:CDS 35.0%
CTGAGATGAACAAGTAGAAT+TGG - chr6_2:71376648-71376667 Msa0927190:CDS 35.0%
AACCTTATCCATAACCACAT+GGG + chr6_2:71376732-71376751 None:intergenic 35.0%
TAACCTTATCCATAACCACA+TGG + chr6_2:71376733-71376752 None:intergenic 35.0%
TGTGGTTATGGATAAGGTTA+AGG - chr6_2:71376733-71376752 Msa0927190:CDS 35.0%
!! ATATTATTGGTGATGATCGG+AGG - chr6_2:71376824-71376843 Msa0927190:intron 35.0%
ACTACATCTCAAACAAACTG+CGG - chr6_2:71377086-71377105 Msa0927190:intron 35.0%
!!! TCACCTAATGGACTACTTTT+GGG - chr6_2:71377256-71377275 Msa0927190:intron 35.0%
TATCCCAAAAGTAGTCCATT+AGG + chr6_2:71377262-71377281 None:intergenic 35.0%
!!! TAATGGACTACTTTTGGGAT+AGG - chr6_2:71377261-71377280 Msa0927190:intron 35.0%
! AGAGAAGTCATTAGTCTCAA+TGG + chr6_2:71377324-71377343 None:intergenic 35.0%
CACTTAACTTCTTCAATGGT+CGG + chr6_2:71377391-71377410 None:intergenic 35.0%
GAAGAAGTTAAGTGAAGTCA+CGG - chr6_2:71377397-71377416 Msa0927190:intron 35.0%
GTTATGAGCATAAGCCTAAA+GGG + chr6_2:71377579-71377598 None:intergenic 35.0%
AGTTATGAGCATAAGCCTAA+AGG + chr6_2:71377580-71377599 None:intergenic 35.0%
TTCATAAAGGACACAATCGT+AGG + chr6_2:71377754-71377773 None:intergenic 35.0%
CGATTGTGTCCTTTATGAAA+TGG - chr6_2:71377755-71377774 Msa0927190:intron 35.0%
TGCTAGCTACCATTTCATAA+AGG + chr6_2:71377767-71377786 None:intergenic 35.0%
TTATGAAATGGTAGCTAGCA+AGG - chr6_2:71377767-71377786 Msa0927190:intron 35.0%
AGAGAATATGAGAAACCCTA+TGG - chr6_2:71377797-71377816 Msa0927190:intron 35.0%
GAAACCCTATGGCTAAAAAA+AGG - chr6_2:71377808-71377827 Msa0927190:intron 35.0%
TTAAAAGGGTCACAAACTAG+AGG - chr6_2:71377831-71377850 Msa0927190:intron 35.0%
AACACAAAACCTGGAGTAAT+TGG + chr6_2:71377980-71377999 None:intergenic 35.0%
! ATGGAGATCCAAGCTTTTAT+GGG - chr6_2:71378204-71378223 Msa0927190:intron 35.0%
ATCAGAATATCCGGAAATAG+AGG - chr6_2:71378303-71378322 Msa0927190:intron 35.0%
AGATCATGCCAAAATCATTG+TGG + chr6_2:71378533-71378552 None:intergenic 35.0%
!!! GATCCCACTGTTTTAGAAAT+GGG + chr6_2:71378731-71378750 None:intergenic 35.0%
!!! AGATCCCACTGTTTTAGAAA+TGG + chr6_2:71378732-71378751 None:intergenic 35.0%
!! TTCAACCAAGTTTTATGTCC+TGG + chr6_2:71378833-71378852 None:intergenic 35.0%
AAGATTGCCATACTTTATGG+GGG - chr6_2:71379056-71379075 Msa0927190:intron 35.0%
!! AATGTCTGATAACGGTTCAA+CGG + chr6_2:71379236-71379255 None:intergenic 35.0%
AACATACCGAAGAATTTCTG+TGG + chr6_2:71379351-71379370 None:intergenic 35.0%
ACAGAAATTCTTCGGTATGT+TGG - chr6_2:71379350-71379369 Msa0927190:intron 35.0%
!!! AGTTTTAAGAGCTACCTCTT+TGG - chr6_2:71379517-71379536 Msa0927190:CDS 35.0%
!!! GTTTTAAGAGCTACCTCTTT+GGG - chr6_2:71379518-71379537 Msa0927190:CDS 35.0%
!! TTTTAAGAGCTACCTCTTTG+GGG - chr6_2:71379519-71379538 Msa0927190:CDS 35.0%
ACTCAAGTGTTCTACATATG+TGG - chr6_2:71379583-71379602 Msa0927190:CDS 35.0%
CTTGTGAACCGTAAATCATA+TGG + chr6_2:71379650-71379669 None:intergenic 35.0%
ACGCAGTAACATAGTAAACT+TGG + chr6_2:71379677-71379696 None:intergenic 35.0%
!! GGAAAAGCTTTGGAAGTTGA+TGG + chr6_2:71374893-71374912 None:intergenic 40.0%
GAACCTCATGAAATCTGCAA+TGG + chr6_2:71375038-71375057 None:intergenic 40.0%
AGGTTCAAGAAAGGGATTGA+TGG - chr6_2:71375052-71375071 Msa0927190:three_prime_UTR 40.0%
! AAAGGGATTGATGGTTCTAC+TGG - chr6_2:71375061-71375080 Msa0927190:three_prime_UTR 40.0%
AAAGGCTTCAAAAGAGACCA+AGG + chr6_2:71375127-71375146 None:intergenic 40.0%
! TCTGTTGTTGTTGTTGTTGC+AGG - chr6_2:71375237-71375256 Msa0927190:CDS 40.0%
! GCTGTTTCCATAAGCTATCA+TGG - chr6_2:71375457-71375476 Msa0927190:CDS 40.0%
AGTCTCTCCATGATAGCTTA+TGG + chr6_2:71375467-71375486 None:intergenic 40.0%
AAGCTATCATGGAGAGACTA+TGG - chr6_2:71375468-71375487 Msa0927190:CDS 40.0%
ACAGCAACTTAGAGCATGTT+TGG - chr6_2:71375617-71375636 Msa0927190:intron 40.0%
TATGTTACAGCTACCATCCA+TGG + chr6_2:71375853-71375872 None:intergenic 40.0%
ATGTTATTAGTGTGGGCACT+TGG - chr6_2:71376075-71376094 Msa0927190:intron 40.0%
AAACACTCTCACTGAGTGTT+TGG - chr6_2:71376389-71376408 Msa0927190:intron 40.0%
CGTTAGGCAGCAAAGAAATT+TGG - chr6_2:71376516-71376535 Msa0927190:intron 40.0%
GCAGCAAAGAAATTTGGGTA+TGG - chr6_2:71376522-71376541 Msa0927190:CDS 40.0%
GAAATTTGGGTATGGATGAG+GGG - chr6_2:71376530-71376549 Msa0927190:CDS 40.0%
GGGAAATCAATCATGAGAAC+AGG - chr6_2:71376600-71376619 Msa0927190:CDS 40.0%
AATCATGAGAACAGGTGGAT+AGG - chr6_2:71376608-71376627 Msa0927190:CDS 40.0%
TGATTAGCACTCAGTGAGAT+TGG + chr6_2:71376759-71376778 None:intergenic 40.0%
TAGGCTTATAAGCCTCACTT+AGG + chr6_2:71377227-71377246 None:intergenic 40.0%
TAAGTGAGGCTTATAAGCCT+AGG - chr6_2:71377226-71377245 Msa0927190:intron 40.0%
AAGTGAGGCTTATAAGCCTA+GGG - chr6_2:71377227-71377246 Msa0927190:intron 40.0%
CATTAGGTGAGAAAATCCCT+AGG + chr6_2:71377246-71377265 None:intergenic 40.0%
! CTAGGGATTTTCTCACCTAA+TGG - chr6_2:71377244-71377263 Msa0927190:intron 40.0%
!!! CTCACCTAATGGACTACTTT+TGG - chr6_2:71377255-71377274 Msa0927190:intron 40.0%
GAGACTAATGACTTCTCTGT+CGG - chr6_2:71377326-71377345 Msa0927190:intron 40.0%
TAATGACTTCTCTGTCGGAA+AGG - chr6_2:71377331-71377350 Msa0927190:intron 40.0%
AATGACTTCTCTGTCGGAAA+GGG - chr6_2:71377332-71377351 Msa0927190:intron 40.0%
CATTGAGTGAAAGTTGTCGT+AGG - chr6_2:71377430-71377449 Msa0927190:intron 40.0%
CAAAGGGTTCTTTCACCTAA+TGG - chr6_2:71377530-71377549 Msa0927190:intron 40.0%
TCGCAAAACACTAGTCCATT+AGG + chr6_2:71377548-71377567 None:intergenic 40.0%
GAATTTGAGCCATCTGTCTT+TGG + chr6_2:71377878-71377897 None:intergenic 40.0%
! CATGTTGCCAATTTTCAGAC+TGG + chr6_2:71377935-71377954 None:intergenic 40.0%
CAAAACCTGGAGTAATTGGA+AGG + chr6_2:71377976-71377995 None:intergenic 40.0%
CATAAAAGCTTGGATCTCCA+TGG + chr6_2:71378205-71378224 None:intergenic 40.0%
! CATGGAGATCCAAGCTTTTA+TGG - chr6_2:71378203-71378222 Msa0927190:intron 40.0%
ATGAGAAAAAGGCCAACAAG+CGG + chr6_2:71378250-71378269 None:intergenic 40.0%
!!! CTTGTTGGCCTTTTTCTCAT+CGG - chr6_2:71378250-71378269 Msa0927190:intron 40.0%
AAACGCTTCCGATGAGAAAA+AGG + chr6_2:71378261-71378280 None:intergenic 40.0%
AAGTCCAGCATCAGAATATC+CGG - chr6_2:71378294-71378313 Msa0927190:intron 40.0%
ATTTCCGGATATTCTGATGC+TGG + chr6_2:71378301-71378320 None:intergenic 40.0%
! TGATGTAAGTGCTGCTATGA+AGG - chr6_2:71378339-71378358 Msa0927190:intron 40.0%
CAAATTGAGAGGGACTTACT+CGG + chr6_2:71378389-71378408 None:intergenic 40.0%
TGTACTGGACCAAATTGAGA+GGG + chr6_2:71378399-71378418 None:intergenic 40.0%
TTGTACTGGACCAAATTGAG+AGG + chr6_2:71378400-71378419 None:intergenic 40.0%
ATACAAACTCTTGCTCCTGT+AGG - chr6_2:71378424-71378443 Msa0927190:intron 40.0%
TACAAACTCTTGCTCCTGTA+GGG - chr6_2:71378425-71378444 Msa0927190:intron 40.0%
TTAGTGCATGTTTGGATCCA+TGG - chr6_2:71378483-71378502 Msa0927190:intron 40.0%
! ACTGTGTGCCACAATGATTT+TGG - chr6_2:71378522-71378541 Msa0927190:intron 40.0%
TGAGTTCGACGAAATCATGT+CGG + chr6_2:71378573-71378592 None:intergenic 40.0%
GGAGGGACCTATAAACTAAT+AGG + chr6_2:71378675-71378694 None:intergenic 40.0%
!! TCCTTTTGAAAGTGTAGTCC+AGG - chr6_2:71378812-71378831 Msa0927190:intron 40.0%
TCCTGGACTACACTTTCAAA+AGG + chr6_2:71378816-71378835 None:intergenic 40.0%
GTAGTCCAGGACATAAAACT+TGG - chr6_2:71378825-71378844 Msa0927190:intron 40.0%
CTCAAAAGAGCAATGGACAA+GGG - chr6_2:71379026-71379045 Msa0927190:intron 40.0%
GTTGAACCGTTATCAGACAT+TGG - chr6_2:71379235-71379254 Msa0927190:intron 40.0%
GCAAAGCCAATGTCTGATAA+CGG + chr6_2:71379244-71379263 None:intergenic 40.0%
! GCTCATCTTTTCGTCAATCT+TGG - chr6_2:71379262-71379281 Msa0927190:intron 40.0%
! CATCTTTTCGTCAATCTTGG+CGG - chr6_2:71379265-71379284 Msa0927190:intron 40.0%
!!! TGGTTTTGGGAGCTATTCTT+CGG - chr6_2:71379296-71379315 Msa0927190:intron 40.0%
GTCTTGTGTAAAAGCTGTCA+TGG - chr6_2:71379695-71379714 Msa0927190:five_prime_UTR 40.0%
AATGTGTGTGTGTGTGTGTG+TGG + chr6_2:71374758-71374777 None:intergenic 45.0%
AGGGTGGAATTTGAAAAGGG+TGG + chr6_2:71374941-71374960 None:intergenic 45.0%
!! GCTTCTCTGAAGCTAGTCAA+TGG + chr6_2:71375732-71375751 None:intergenic 45.0%
AGGGGCTGATACAATTCACA+GGG - chr6_2:71376548-71376567 Msa0927190:CDS 45.0%
AGCCCATGTGGTTATGGATA+AGG - chr6_2:71376727-71376746 Msa0927190:CDS 45.0%
TATTAGCTGTACCTTTGGCG+TGG - chr6_2:71377055-71377074 Msa0927190:intron 45.0%
! TTTGGGATAGGTTCTCCCTT+TGG - chr6_2:71377273-71377292 Msa0927190:intron 45.0%
! TACTTGCGAAGGGTTCTGAT+CGG - chr6_2:71377356-71377375 Msa0927190:intron 45.0%
CACAACTGCTCATTGATGCA+TGG - chr6_2:71377611-71377630 Msa0927190:intron 45.0%
TGGATGCATCCAAAGACAGA+TGG - chr6_2:71377866-71377885 Msa0927190:intron 45.0%
GACAGATGGCTCAAATTCTG+AGG - chr6_2:71377880-71377899 Msa0927190:intron 45.0%
TGAGACCTTCCAATTACTCC+AGG - chr6_2:71377968-71377987 Msa0927190:intron 45.0%
AATGTTGCAGCCTTCGATTC+CGG - chr6_2:71378168-71378187 Msa0927190:intron 45.0%
TCAAGATCTTCCGGAATCGA+AGG + chr6_2:71378181-71378200 None:intergenic 45.0%
TTCCGGAAGATCTTGATCCA+TGG - chr6_2:71378185-71378204 Msa0927190:intron 45.0%
CTCCATGGATCAAGATCTTC+CGG + chr6_2:71378190-71378209 None:intergenic 45.0%
ACGTGAAGCCCATAAAAGCT+TGG + chr6_2:71378215-71378234 None:intergenic 45.0%
!! GGAAGCGTTTGTGCAAATGT+GGG - chr6_2:71378271-71378290 Msa0927190:intron 45.0%
CTTGACAACGCCTCTATTTC+CGG + chr6_2:71378316-71378335 None:intergenic 45.0%
! CGGATGTTAGTCTCTTTGCA+AGG + chr6_2:71378369-71378388 None:intergenic 45.0%
CGAGTAAGTCCCTCTCAATT+TGG - chr6_2:71378387-71378406 Msa0927190:intron 45.0%
GTTTGGATCCATGGTGAGTT+TGG - chr6_2:71378492-71378511 Msa0927190:intron 45.0%
TGATTCAGCCAAACTCACCA+TGG + chr6_2:71378503-71378522 None:intergenic 45.0%
TAGGTCCCTCCAGATTTATG+TGG - chr6_2:71378684-71378703 Msa0927190:intron 45.0%
AGGTCCCTCCAGATTTATGT+GGG - chr6_2:71378685-71378704 Msa0927190:intron 45.0%
! TGGGCCCTGCATAATTTTGT+GGG - chr6_2:71378704-71378723 Msa0927190:intron 45.0%
!! GGGCCCATTTCTAAAACAGT+GGG - chr6_2:71378725-71378744 Msa0927190:intron 45.0%
GACACAAAATACGGCAGATG+TGG - chr6_2:71378953-71378972 Msa0927190:intron 45.0%
ACAAAATACGGCAGATGTGG+AGG - chr6_2:71378956-71378975 Msa0927190:intron 45.0%
CGAGAACCTCAAAAGAGCAA+TGG - chr6_2:71379019-71379038 Msa0927190:intron 45.0%
! CCTTGTCCATTGCTCTTTTG+AGG + chr6_2:71379028-71379047 None:intergenic 45.0%
CCTCAAAAGAGCAATGGACA+AGG - chr6_2:71379025-71379044 Msa0927190:intron 45.0%
ATTGCCATACTTTATGGGGG+TGG - chr6_2:71379059-71379078 Msa0927190:intron 45.0%
CAGCTTGGTCCATAAGGAAA+AGG - chr6_2:71379153-71379172 Msa0927190:intron 45.0%
! ACTTCCGTTTCTGAAGACAG+TGG - chr6_2:71379193-71379212 Msa0927190:intron 45.0%
!! GCACTTCTGAAGCTCTGTGA+AGG - chr6_2:71375671-71375690 Msa0927190:intron 50.0%
! CCTAACGAGTCCAGAGTGTT+TGG + chr6_2:71376503-71376522 None:intergenic 50.0%
CCAAACACTCTGGACTCGTT+AGG - chr6_2:71376500-71376519 Msa0927190:intron 50.0%
GAGGGGCTGATACAATTCAC+AGG - chr6_2:71376547-71376566 Msa0927190:CDS 50.0%
ATGAGAACAGGTGGATAGGC+AGG - chr6_2:71376612-71376631 Msa0927190:CDS 50.0%
ATGCAGGTCTAGCAAACCAC+TGG - chr6_2:71376699-71376718 Msa0927190:CDS 50.0%
GTTTGCAGCCCATGTGGTTA+TGG - chr6_2:71376721-71376740 Msa0927190:CDS 50.0%
AGTTCAGCAATCCACGCCAA+AGG + chr6_2:71377069-71377088 None:intergenic 50.0%
CGGAAAGTCTCACCTAAGTG+AGG - chr6_2:71377212-71377231 Msa0927190:intron 50.0%
!! AGGCATCGATCCTCGAATGA+TGG - chr6_2:71377450-71377469 Msa0927190:intron 50.0%
! ATCCTCGAATGATGGTGCAG+TGG - chr6_2:71377458-71377477 Msa0927190:intron 50.0%
TTGCGACGAGCTTTCCCTTT+AGG - chr6_2:71377562-71377581 Msa0927190:intron 50.0%
!! GTATTTTCTGGCCCTCCAGA+AGG - chr6_2:71377719-71377738 Msa0927190:intron 50.0%
! GTACTTCCTATGCCGCTTGT+TGG - chr6_2:71378235-71378254 Msa0927190:intron 50.0%
AAAAGGCCAACAAGCGGCAT+AGG + chr6_2:71378244-71378263 None:intergenic 50.0%
!! CGGAAGCGTTTGTGCAAATG+TGG - chr6_2:71378270-71378289 Msa0927190:intron 50.0%
!! CGGAAATAGAGGCGTTGTCA+AGG - chr6_2:71378314-71378333 Msa0927190:intron 50.0%
CTCGTAGCTCAAAACCCTAC+AGG + chr6_2:71378442-71378461 None:intergenic 50.0%
AGGGCCCACATAAATCTGGA+GGG + chr6_2:71378692-71378711 None:intergenic 50.0%
ATGCAGGGCCCACATAAATC+TGG + chr6_2:71378696-71378715 None:intergenic 50.0%
! GTGGGCCCTGCATAATTTTG+TGG - chr6_2:71378703-71378722 Msa0927190:intron 50.0%
! GGGCCCTGCATAATTTTGTG+GGG - chr6_2:71378705-71378724 Msa0927190:intron 50.0%
GGGCCCCACAAAATTATGCA+GGG + chr6_2:71378711-71378730 None:intergenic 50.0%
TGGGCCCCACAAAATTATGC+AGG + chr6_2:71378712-71378731 None:intergenic 50.0%
!! GGGGCCCATTTCTAAAACAG+TGG - chr6_2:71378724-71378743 Msa0927190:intron 50.0%
CTCAATCTCCTTCCGAGATC+CGG + chr6_2:71379092-71379111 None:intergenic 50.0%
GGATCTCGGAAGGAGATTGA+GGG - chr6_2:71379091-71379110 Msa0927190:intron 50.0%
GAGTTCGATTTAGTCCCGTC+TGG - chr6_2:71379116-71379135 Msa0927190:intron 50.0%
GGGTAACAGCTTGGTCCATA+AGG - chr6_2:71379147-71379166 Msa0927190:intron 50.0%
CTGGCCACTGTCTTCAGAAA+CGG + chr6_2:71379200-71379219 None:intergenic 50.0%
! GTTTCTGAAGACAGTGGCCA+GGG - chr6_2:71379199-71379218 Msa0927190:intron 50.0%
! CTTTTCGTCAATCTTGGCGG+TGG - chr6_2:71379268-71379287 Msa0927190:intron 50.0%
GGAGCTATTCTTCGGTACCA+CGG - chr6_2:71379304-71379323 Msa0927190:intron 50.0%
TCTTCGGTACCACGGTGAAT+TGG - chr6_2:71379312-71379331 Msa0927190:intron 50.0%
CTTCGGTACCACGGTGAATT+GGG - chr6_2:71379313-71379332 Msa0927190:intron 50.0%
ATCAGAGACCCAATTCACCG+TGG + chr6_2:71379324-71379343 None:intergenic 50.0%
!! ACCTCTTTGGGGCATGGAAA+TGG - chr6_2:71379530-71379549 Msa0927190:CDS 50.0%
!! CCTCTTTGGGGCATGGAAAT+GGG - chr6_2:71379531-71379550 Msa0927190:CDS 50.0%
ATCCTGACATTCAACGGCCG+CGG - chr6_2:71376944-71376963 Msa0927190:intron 55.0%
TCGGAAAGGGCTACTTGCGA+AGG - chr6_2:71377345-71377364 Msa0927190:intron 55.0%
CGGAAAGGGCTACTTGCGAA+GGG - chr6_2:71377346-71377365 Msa0927190:intron 55.0%
! TTGCGAAGGGTTCTGATCGG+TGG - chr6_2:71377359-71377378 Msa0927190:intron 55.0%
! GAAGGGTTCTGATCGGTGGA+GGG - chr6_2:71377363-71377382 Msa0927190:intron 55.0%
CACCACTGCACCATCATTCG+AGG + chr6_2:71377463-71377482 None:intergenic 55.0%
GTGGTGTGAGTCTCACACTG+TGG - chr6_2:71377477-71377496 Msa0927190:intron 55.0%
GGACTCAAGCTCCTTCTGGA+GGG + chr6_2:71377733-71377752 None:intergenic 55.0%
AGGACTCAAGCTCCTTCTGG+AGG + chr6_2:71377734-71377753 None:intergenic 55.0%
CGTAGGACTCAAGCTCCTTC+TGG + chr6_2:71377737-71377756 None:intergenic 55.0%
CAGGGCCCACATAAATCTGG+AGG + chr6_2:71378693-71378712 None:intergenic 55.0%
GTGGCCACCCCCATAAAGTA+TGG + chr6_2:71379066-71379085 None:intergenic 55.0%
CGGATCTCGGAAGGAGATTG+AGG - chr6_2:71379090-71379109 Msa0927190:intron 55.0%
TCTCGGAAGGAGATTGAGGG+AGG - chr6_2:71379094-71379113 Msa0927190:intron 55.0%
CGATTTAGTCCCGTCTGGTG+TGG - chr6_2:71379121-71379140 Msa0927190:intron 55.0%
TTACCCACTCCACACCAGAC+GGG + chr6_2:71379133-71379152 None:intergenic 55.0%
GTTACCCACTCCACACCAGA+CGG + chr6_2:71379134-71379153 None:intergenic 55.0%
GTGTGGAGTGGGTAACAGCT+TGG - chr6_2:71379138-71379157 Msa0927190:intron 55.0%
! CGTTTCTGAAGACAGTGGCC+AGG - chr6_2:71379198-71379217 Msa0927190:intron 55.0%
CAATCTTGGCGGTGGATCTG+TGG - chr6_2:71379276-71379295 Msa0927190:intron 55.0%
! TGGCGGTGGATCTGTGGTTT+TGG - chr6_2:71379282-71379301 Msa0927190:intron 55.0%
! GGCGGTGGATCTGTGGTTTT+GGG - chr6_2:71379283-71379302 Msa0927190:intron 55.0%
!! AGAGCTACCTCTTTGGGGCA+TGG - chr6_2:71379524-71379543 Msa0927190:CDS 55.0%
CCCATTTCCATGCCCCAAAG+AGG + chr6_2:71379534-71379553 None:intergenic 55.0%
! CCACATGGGCTGCAAACCAG+TGG + chr6_2:71376718-71376737 None:intergenic 60.0%
!! CCACTGGTTTGCAGCCCATG+TGG - chr6_2:71376715-71376734 Msa0927190:CDS 60.0%
TCCTGACATTCAACGGCCGC+GGG - chr6_2:71376945-71376964 Msa0927190:intron 60.0%
! CGAAGGGTTCTGATCGGTGG+AGG - chr6_2:71377362-71377381 Msa0927190:intron 60.0%
TTATGGGGGTGGCCACATGC+CGG - chr6_2:71379070-71379089 Msa0927190:intron 60.0%
TCCTTCCGAGATCCGGCATG+TGG + chr6_2:71379085-71379104 None:intergenic 60.0%
TAGTCCCGTCTGGTGTGGAG+TGG - chr6_2:71379126-71379145 Msa0927190:intron 60.0%
AGTCCCGTCTGGTGTGGAGT+GGG - chr6_2:71379127-71379146 Msa0927190:intron 60.0%
AAGACAGTGGCCAGGGCTTC+AGG - chr6_2:71379206-71379225 Msa0927190:intron 60.0%
CCTGACATTCAACGGCCGCG+GGG - chr6_2:71376946-71376965 Msa0927190:intron 65.0%
CTGACATTCAACGGCCGCGG+GGG - chr6_2:71376947-71376966 Msa0927190:intron 65.0%
GGTGGCCACATGCCGGATCT+CGG - chr6_2:71379077-71379096 Msa0927190:intron 65.0%
GCCACATGCCGGATCTCGGA+AGG - chr6_2:71379081-71379100 Msa0927190:intron 65.0%
CAGTGGCCAGGGCTTCAGGT+TGG - chr6_2:71379210-71379229 Msa0927190:intron 65.0%
CAACGGCCAACCTGAAGCCC+TGG + chr6_2:71379219-71379238 None:intergenic 65.0%
CCCCGCGGCCGTTGAATGTC+AGG + chr6_2:71376949-71376968 None:intergenic 70.0%
ACATTCAACGGCCGCGGGGG+TGG - chr6_2:71376950-71376969 Msa0927190:intron 70.0%
CATTCAACGGCCGCGGGGGT+GGG - chr6_2:71376951-71376970 Msa0927190:intron 70.0%
ATTCAACGGCCGCGGGGGTG+GGG - chr6_2:71376952-71376971 Msa0927190:intron 70.0%
TTCAACGGCCGCGGGGGTGG+GGG - chr6_2:71376953-71376972 Msa0927190:intron 75.0%
! TCAACGGCCGCGGGGGTGGG+GGG - chr6_2:71376954-71376973 Msa0927190:intron 80.0%
! CTTCCCTCCCCCCACCCCCG+CGG + chr6_2:71376964-71376983 None:intergenic 80.0%
! ACGGCCGCGGGGGTGGGGGG+AGG - chr6_2:71376957-71376976 Msa0927190:intron 90.0%
! CGGCCGCGGGGGTGGGGGGA+GGG - chr6_2:71376958-71376977 Msa0927190:intron 90.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71374755 71379752 71374755 ID=Msa0927190;Name=Msa0927190
chr6_2 mRNA 71374755 71379752 71374755 ID=Msa0927190-mRNA-1;Parent=Msa0927190;Name=Msa0927190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=66|1|1|1|1|1|5|373|451
chr6_2 exon 71374755 71375557 71374755 ID=Msa0927190-mRNA-1:exon:11868;Parent=Msa0927190-mRNA-1
chr6_2 exon 71376118 71376401 71376118 ID=Msa0927190-mRNA-1:exon:11867;Parent=Msa0927190-mRNA-1
chr6_2 exon 71376518 71376788 71376518 ID=Msa0927190-mRNA-1:exon:11866;Parent=Msa0927190-mRNA-1
chr6_2 exon 71379211 71379248 71379211 ID=Msa0927190-mRNA-1:exon:11865;Parent=Msa0927190-mRNA-1
chr6_2 exon 71379354 71379752 71379354 ID=Msa0927190-mRNA-1:exon:11864;Parent=Msa0927190-mRNA-1
chr6_2 five_prime_UTR 71379687 71379752 71379687 ID=Msa0927190-mRNA-1:five_prime_utr;Parent=Msa0927190-mRNA-1
chr6_2 CDS 71379354 71379686 71379354 ID=Msa0927190-mRNA-1:cds;Parent=Msa0927190-mRNA-1
chr6_2 CDS 71379211 71379248 71379211 ID=Msa0927190-mRNA-1:cds;Parent=Msa0927190-mRNA-1
chr6_2 CDS 71376518 71376788 71376518 ID=Msa0927190-mRNA-1:cds;Parent=Msa0927190-mRNA-1
chr6_2 CDS 71376118 71376401 71376118 ID=Msa0927190-mRNA-1:cds;Parent=Msa0927190-mRNA-1
chr6_2 CDS 71375128 71375557 71375128 ID=Msa0927190-mRNA-1:cds;Parent=Msa0927190-mRNA-1
chr6_2 three_prime_UTR 71374755 71375127 71374755 ID=Msa0927190-mRNA-1:three_prime_utr;Parent=Msa0927190-mRNA-1
Gene Sequence

>Msa0927190

ATGGTGTTAACTTCAATTTCATCAATATCTTCACCTTCATCATCATCATCTTCATTCTTCTCTGATTCACCATCAACTTCCAAAGCTTTTCCTTCTTTTCTTGTTGGATTTCCAAAACCACCCTTTTCAAATTCCACCCTCAAAATCAAAACTTGTTTTGCTTCATCAGTTCAACAAGAAAATGGGTCACCAGAACAGTTTCTACAAAGCAATTCCATTGCAGATTTCATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAGACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTTTTCAGGTTGATTTGATTTCAACAATTCATATAGCAGATGAAGAGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGGTCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTGAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGCAAGCAAAAGGTGAAAGCTTATTTTCTTTTGCAAAAGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCGATTCCGGAAGATCTTGATCCATGGAGATCCAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCGGAAATAGAGGCGTTGTCAAGGCTTGATGTAAGTGCTGCTATGAAGGTCTTCCTTGCAAAGAGACTAACATCCGACTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATCGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAAAAGAGCAATGGACAAGGGACAAAATAAGATTGCCATACTTTATGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGGTAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTGGCCAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGTACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>Msa0927190

MVLTSISSISSPSSSSSSFFSDSPSTSKAFPSFLVGFPKPPFSNSTLKIKTCFASSVQQENGSPEQFLQSNSIADFMRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFFQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLKRAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWVTAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN*