Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001690 | XP_013453245.1 | 92.477 | 545 | 38 | 1 | 1 | 542 | 1 | 545 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001690 | sp|Q6H501|HKT6_ORYSJ | 47.290 | 535 | 266 | 7 | 9 | 541 | 10 | 530 | 1.73e-153 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001690 | A0A072UBR1 | 92.477 | 545 | 38 | 1 | 1 | 542 | 1 | 545 | 0.0 | 969 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0868410 | Msa1001690 | 0.936418 | 1.792481e-97 | -8.615850e-47 |
| Msa0925420 | Msa1001690 | 0.923541 | 2.319472e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001690 | MtrunA17_Chr6g0488721 | 92.477 | 545 | 38 | 1 | 1 | 542 | 1 | 545 | 0.0 | 969 |
| Msa1001690 | MtrunA17_Chr6g0488681 | 75.362 | 552 | 124 | 4 | 1 | 542 | 1 | 550 | 0.0 | 821 |
| Msa1001690 | MtrunA17_Chr6g0488671 | 72.494 | 389 | 91 | 4 | 16 | 400 | 5 | 381 | 0.0 | 522 |
| Msa1001690 | MtrunA17_Chr6g0488731 | 51.606 | 498 | 219 | 4 | 49 | 541 | 55 | 535 | 4.56e-162 | 471 |
| Msa1001690 | MtrunA17_Chr6g0488711 | 45.799 | 369 | 171 | 6 | 38 | 400 | 30 | 375 | 2.50e-82 | 261 |
| Msa1001690 | MtrunA17_Chr6g0488661 | 77.612 | 67 | 15 | 0 | 475 | 541 | 4 | 70 | 4.18e-31 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001690 | AT4G10310.1 | 46.502 | 486 | 225 | 6 | 66 | 541 | 41 | 501 | 3.33e-140 | 415 |
Find 90 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCATGTGATTTAATATT+TGG | 0.111690 | 6_4:+85553475 | None:intergenic |
| GTATTTGTCTATGAAATATT+TGG | 0.172984 | 6_4:-85553425 | Msa1001690:CDS |
| GGATTGGATTTGTTGGAAAA+TGG | 0.247031 | 6_4:-85547802 | Msa1001690:CDS |
| CTCATTCCACAAGTACTTCT+TGG | 0.250746 | 6_4:-85553175 | Msa1001690:CDS |
| ACCACCTATGAACATTAATA+TGG | 0.277554 | 6_4:+85553669 | None:intergenic |
| GAAATCTTTACCTCCATGTT+AGG | 0.285989 | 6_4:-85553646 | Msa1001690:CDS |
| CACATAATGGATTTGCTCTT+AGG | 0.295579 | 6_4:+85553878 | None:intergenic |
| CTCCAAATAGACCTATAAAA+TGG | 0.306144 | 6_4:+85553371 | None:intergenic |
| TATTTGGGTTATATAGTTCT+TGG | 0.306601 | 6_4:-85553409 | Msa1001690:CDS |
| GAAACACACTCTTTATCTTA+TGG | 0.310209 | 6_4:-85553026 | Msa1001690:CDS |
| TATAGAATTTGAACACATAA+TGG | 0.317950 | 6_4:+85553865 | None:intergenic |
| TATTTGTCTATGAAATATTT+GGG | 0.336831 | 6_4:-85553424 | Msa1001690:CDS |
| AACAAATGGATTGGATTTGT+TGG | 0.352409 | 6_4:-85547809 | Msa1001690:CDS |
| CTCACTGCTTTCTGACAATC+TGG | 0.353034 | 6_4:+85551824 | None:intergenic |
| TCAGAACGTAGGATTTACTA+TGG | 0.370500 | 6_4:-85547876 | Msa1001690:CDS |
| AAGCATGTCCACGGTTGAAA+TGG | 0.379857 | 6_4:-85553725 | Msa1001690:CDS |
| TCGCACATTAAAATTTCCTT+TGG | 0.387179 | 6_4:+85547571 | None:intergenic |
| TTAGGTGTTGTTTGATGTAA+AGG | 0.388596 | 6_4:+85553793 | None:intergenic |
| CGTGTCTTGAATTTATGCTT+TGG | 0.390885 | 6_4:+85552891 | None:intergenic |
| GGTTACAAACACTTGTTACA+TGG | 0.403785 | 6_4:-85553049 | Msa1001690:CDS |
| AATTATATCACAAGCAATCT+TGG | 0.407295 | 6_4:-85552843 | Msa1001690:CDS |
| ACAATCAAGATGGAGATCTT+AGG | 0.409146 | 6_4:-85554009 | Msa1001690:exon |
| AATTCAGATTGAAGTTGAAA+TGG | 0.415458 | 6_4:-85553536 | Msa1001690:CDS |
| CTGAATTTGATCAACAATGA+TGG | 0.416216 | 6_4:+85553552 | None:intergenic |
| TTTAATATTTGGCTTTGATA+AGG | 0.417107 | 6_4:+85553486 | None:intergenic |
| ATTACCATATTAATGTTCAT+AGG | 0.419635 | 6_4:-85553673 | Msa1001690:CDS |
| TCATTCCACAAGTACTTCTT+GGG | 0.420368 | 6_4:-85553174 | Msa1001690:CDS |
| CGAGTGCTATATGCTAATAA+AGG | 0.425458 | 6_4:-85547514 | Msa1001690:three_prime_UTR |
| AGGCAAATTGTGAAAACAAA+TGG | 0.428571 | 6_4:-85547823 | Msa1001690:CDS |
| ATATTGCTGTTGAAGTTGTC+AGG | 0.430083 | 6_4:-85551659 | Msa1001690:intron |
| AATTGTGAAAACAAATGGAT+TGG | 0.439853 | 6_4:-85547818 | Msa1001690:CDS |
| TGAATTTGATCAACAATGAT+GGG | 0.452048 | 6_4:+85553553 | None:intergenic |
| GTAGCACAAGTGAAAATTTG+AGG | 0.459197 | 6_4:-85553447 | Msa1001690:CDS |
| CTTACACCTCATTCCTCCCT+TGG | 0.459685 | 6_4:-85551857 | Msa1001690:CDS |
| AAATCTTTACCTCCATGTTA+GGG | 0.460275 | 6_4:-85553645 | Msa1001690:CDS |
| GTTTCAACATTTGCAAGTTG+TGG | 0.462060 | 6_4:-85553259 | Msa1001690:CDS |
| TGGAATTCAGAAGGTTTGAA+AGG | 0.480618 | 6_4:-85552950 | Msa1001690:CDS |
| TGAAACTGTGGTGGCTGAAA+CGG | 0.481952 | 6_4:+85553747 | None:intergenic |
| TTGAACAATGTAGAGGAGGT+TGG | 0.493563 | 6_4:-85553070 | Msa1001690:CDS |
| TGGTAATGATGATTAATTGA+GGG | 0.499693 | 6_4:+85553689 | None:intergenic |
| GGAATTCAGAAGGTTTGAAA+GGG | 0.512872 | 6_4:-85552949 | Msa1001690:CDS |
| ATTGCTACATTGCATGGAAG+TGG | 0.514767 | 6_4:+85547538 | None:intergenic |
| TTTATAAGAAGAAAGAGTGT+AGG | 0.516889 | 6_4:-85553099 | Msa1001690:CDS |
| GTTACAAACACTTGTTACAT+GGG | 0.518560 | 6_4:-85553048 | Msa1001690:CDS |
| TTTAGTACTTGTTTAGCACT+AGG | 0.532880 | 6_4:+85553325 | None:intergenic |
| CAAGGGAGGAATGAGGTGTA+AGG | 0.535818 | 6_4:+85551858 | None:intergenic |
| AATATTAGAAACAATCAAGA+TGG | 0.536765 | 6_4:-85554019 | Msa1001690:exon |
| ATGAATCAGAGAAGTTTCCA+TGG | 0.537160 | 6_4:+85547701 | None:intergenic |
| TACAAAATCTCAAGCATGGA+GGG | 0.537636 | 6_4:+85553140 | None:intergenic |
| TCATTCCTCCCTTGGAAAGA+CGG | 0.539809 | 6_4:-85551849 | Msa1001690:CDS |
| ATCTGGATCCGTCTTTCCAA+GGG | 0.543104 | 6_4:+85551841 | None:intergenic |
| AATCTGGATCCGTCTTTCCA+AGG | 0.543684 | 6_4:+85551840 | None:intergenic |
| TTGAAGACATTGAAATTGAG+AGG | 0.543741 | 6_4:+85551681 | None:intergenic |
| AACTGAGAGGAAACAATTGA+AGG | 0.543924 | 6_4:-85551709 | Msa1001690:CDS |
| GTGAAATCGAAGCTGATGTT+AGG | 0.549258 | 6_4:+85547664 | None:intergenic |
| ACAGAGATGCAGATAATCCA+TGG | 0.550388 | 6_4:-85547718 | Msa1001690:CDS |
| CTAATGGATTGGAATTCAGA+AGG | 0.552605 | 6_4:-85552959 | Msa1001690:CDS |
| TATTCCAACAAATGAAAACA+TGG | 0.552785 | 6_4:-85553233 | Msa1001690:CDS |
| ATAATGGATTTGCTCTTAGG+AGG | 0.556646 | 6_4:+85553881 | None:intergenic |
| ATGGTAATGATGATTAATTG+AGG | 0.556657 | 6_4:+85553688 | None:intergenic |
| GGAATGAGGTGTAAGGTGGA+AGG | 0.557623 | 6_4:+85551865 | None:intergenic |
| CACAGTTTCAAGCATGTCCA+CGG | 0.566687 | 6_4:-85553734 | Msa1001690:CDS |
| CATATACAAAATCTCAAGCA+TGG | 0.570855 | 6_4:+85553136 | None:intergenic |
| TTGATAAGGAAGTTATGTGA+AGG | 0.575813 | 6_4:+85553500 | None:intergenic |
| ACTCGAATTGCTACATTGCA+TGG | 0.580840 | 6_4:+85547532 | None:intergenic |
| GTTGGAAAATGGAGTGATGA+GGG | 0.582784 | 6_4:-85547791 | Msa1001690:CDS |
| GAATTTGATCAACAATGATG+GGG | 0.595346 | 6_4:+85553554 | None:intergenic |
| AGCATAAATTCAAGACACGC+TGG | 0.597785 | 6_4:-85552887 | Msa1001690:CDS |
| AATGAAATAAAGCCCTAACA+TGG | 0.597904 | 6_4:+85553633 | None:intergenic |
| TGTTGGAAAATGGAGTGATG+AGG | 0.598002 | 6_4:-85547792 | Msa1001690:CDS |
| GTGTTCCCAAGAAGTACTTG+TGG | 0.605805 | 6_4:+85553169 | None:intergenic |
| TTTGACATGAAGTGTTACAA+AGG | 0.607602 | 6_4:+85553962 | None:intergenic |
| ACCATATTAATGTTCATAGG+TGG | 0.608285 | 6_4:-85553670 | Msa1001690:CDS |
| TAGCACTAGGAATCATTGCA+AGG | 0.608330 | 6_4:+85553338 | None:intergenic |
| GGGAGGAATGAGGTGTAAGG+TGG | 0.611974 | 6_4:+85551861 | None:intergenic |
| GATTGTCAGAAAGCAGTGAG+AGG | 0.620502 | 6_4:-85551821 | Msa1001690:CDS |
| AATTGTCTTAAAATGACCAA+AGG | 0.624818 | 6_4:-85547587 | Msa1001690:three_prime_UTR |
| GTCTTTCCAAGGGAGGAATG+AGG | 0.630306 | 6_4:+85551851 | None:intergenic |
| CAGAACGTAGGATTTACTAT+GGG | 0.630658 | 6_4:-85547875 | Msa1001690:CDS |
| CGTGGACATGCTTGAAACTG+TGG | 0.640517 | 6_4:+85553735 | None:intergenic |
| GGACATGCTTGAAACTGTGG+TGG | 0.641655 | 6_4:+85553738 | None:intergenic |
| TTGCTTGTGATATAATTGAG+AGG | 0.644531 | 6_4:+85552849 | None:intergenic |
| TGAGAGAAACTAACATCATG+AGG | 0.646651 | 6_4:+85552810 | None:intergenic |
| ACACGCTGGAGAAACTATTG+TGG | 0.648012 | 6_4:-85552873 | Msa1001690:CDS |
| TGGATCCGTCTTTCCAAGGG+AGG | 0.654409 | 6_4:+85551844 | None:intergenic |
| TACTAGTTTGCATAACTGAG+AGG | 0.669787 | 6_4:-85551722 | Msa1001690:CDS |
| TGAACGACAGTTGCATCCAG+AGG | 0.684181 | 6_4:-85547843 | Msa1001690:CDS |
| ATACAAAATCTCAAGCATGG+AGG | 0.690104 | 6_4:+85553139 | None:intergenic |
| GAAATAAAGCCCTAACATGG+AGG | 0.692954 | 6_4:+85553636 | None:intergenic |
| GACAGTGCATATCAGAACGT+AGG | 0.730512 | 6_4:-85547887 | Msa1001690:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTATTTTTATTATT+AGG | - | chr6_4:85548759-85548778 | Msa1001690:intron | 0.0% |
| !! | AATTATTATCAAAAATTGAT+TGG | - | chr6_4:85548586-85548605 | Msa1001690:intron | 10.0% |
| !!! | ATTTTAATGTAAAAAATATG+TGG | + | chr6_4:85548887-85548906 | None:intergenic | 10.0% |
| !! | AAGATTTAATAAAAAAATTG+AGG | - | chr6_4:85548946-85548965 | Msa1001690:intron | 10.0% |
| !! | AGATTTAATAAAAAAATTGA+GGG | - | chr6_4:85548947-85548966 | Msa1001690:intron | 10.0% |
| !!! | TTAAAAAAAAATCTCTTTTT+TGG | - | chr6_4:85549912-85549931 | Msa1001690:intron | 10.0% |
| !!! | TAAAAAAAAATCTCTTTTTT+GGG | - | chr6_4:85549913-85549932 | Msa1001690:intron | 10.0% |
| !! | AATAATATATATTATCAACT+AGG | - | chr6_4:85550158-85550177 | Msa1001690:intron | 10.0% |
| !!! | ATTTTAATCATATTTTGTTA+TGG | + | chr6_4:85550511-85550530 | None:intergenic | 10.0% |
| !! | CTAATTCATTAAAAATAATA+AGG | - | chr6_4:85550885-85550904 | Msa1001690:intron | 10.0% |
| !! | TAATATCGTAAATAATATTT+CGG | + | chr6_4:85552974-85552993 | None:intergenic | 10.0% |
| !!! | AAAGTTATTAAAAAAGTATT+TGG | - | chr6_4:85554045-85554064 | Msa1001690:five_prime_UTR | 10.0% |
| !! | TATTTGTCTATGAAATATTT+GGG | - | chr6_4:85548085-85548104 | Msa1001690:intron | 15.0% |
| !!! | ATTATAATTCTCCATTTTAT+AGG | - | chr6_4:85548127-85548146 | Msa1001690:intron | 15.0% |
| !! | TATTAAAAAATAACAATCCA+AGG | - | chr6_4:85548992-85549011 | Msa1001690:intron | 15.0% |
| !! | TATAACATTTGCAATATTAA+TGG | - | chr6_4:85549238-85549257 | Msa1001690:intron | 15.0% |
| !! | ATAACATTTGCAATATTAAT+GGG | - | chr6_4:85549239-85549258 | Msa1001690:intron | 15.0% |
| !! | TCATCTAAATTATACTATTT+AGG | + | chr6_4:85549534-85549553 | None:intergenic | 15.0% |
| !!! | AAGAGATTTTTTTTTAATGT+TGG | + | chr6_4:85549909-85549928 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTATCATAATGAT+CGG | + | chr6_4:85550260-85550279 | None:intergenic | 15.0% |
| !!! | TTTTCATTTTCTTAATGTTT+TGG | - | chr6_4:85551618-85551637 | Msa1001690:intron | 15.0% |
| !!! | TTTCATTTTCTTAATGTTTT+GGG | - | chr6_4:85551619-85551638 | Msa1001690:intron | 15.0% |
| !!! | AGAAAAAAAATCATGAATTT+TGG | + | chr6_4:85551684-85551703 | None:intergenic | 15.0% |
| !! | AACAACAAATGATTATTATT+GGG | + | chr6_4:85551828-85551847 | None:intergenic | 15.0% |
| !! | TAAGAATAAGAAATAAAAGA+TGG | - | chr6_4:85551993-85552012 | Msa1001690:intron | 15.0% |
| !! | ACTAACTTCTTATAATAATT+TGG | - | chr6_4:85552175-85552194 | Msa1001690:intron | 15.0% |
| !! | AAAAAATTGTCATTAATACA+TGG | - | chr6_4:85552775-85552794 | Msa1001690:intron | 15.0% |
| !!! | TGTATACCTTTAATTTAATT+AGG | - | chr6_4:85553067-85553086 | Msa1001690:CDS | 15.0% |
| !! | CATATGTATCTTTATAATAT+AGG | - | chr6_4:85553122-85553141 | Msa1001690:CDS | 15.0% |
| !! | TAAACTAAAAAAAACCAATA+TGG | + | chr6_4:85553187-85553206 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTTAGTTTAAAT+TGG | - | chr6_4:85553190-85553209 | Msa1001690:CDS | 15.0% |
| !! | TAATTAAGTTTGATGAAAAA+AGG | + | chr6_4:85553278-85553297 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTAAATTAAGACT+GGG | + | chr6_4:85553382-85553401 | None:intergenic | 15.0% |
| !!! | AATTTGTTTTAAATTAAGAC+TGG | + | chr6_4:85553383-85553402 | None:intergenic | 15.0% |
| !!! | AGTCTTAATTTAAAACAAAT+TGG | - | chr6_4:85553382-85553401 | Msa1001690:CDS | 15.0% |
| !! | AATATTAGAAACAATCAAGA+TGG | - | chr6_4:85547490-85547509 | Msa1001690:three_prime_UTR | 20.0% |
| !! | TGCTAAGAAAAAAAATGATT+TGG | + | chr6_4:85547588-85547607 | None:intergenic | 20.0% |
| !! | TATAGAATTTGAACACATAA+TGG | + | chr6_4:85547647-85547666 | None:intergenic | 20.0% |
| !!! | AAGAACAAATCTAAGTTTTT+AGG | + | chr6_4:85547737-85547756 | None:intergenic | 20.0% |
| !! | ATTACCATATTAATGTTCAT+AGG | - | chr6_4:85547836-85547855 | Msa1001690:CDS | 20.0% |
| !!! | TTTAATATTTGGCTTTGATA+AGG | + | chr6_4:85548026-85548045 | None:intergenic | 20.0% |
| !! | GATTCATGTGATTTAATATT+TGG | + | chr6_4:85548037-85548056 | None:intergenic | 20.0% |
| !! | GTATTTGTCTATGAAATATT+TGG | - | chr6_4:85548084-85548103 | Msa1001690:intron | 20.0% |
| !! | TAAACAAGTACTAAAAAACA+AGG | - | chr6_4:85548192-85548211 | Msa1001690:intron | 20.0% |
| !! | AAACAAGTACTAAAAAACAA+GGG | - | chr6_4:85548193-85548212 | Msa1001690:intron | 20.0% |
| !! | TATAGTAAAAATTGAGAAAG+TGG | + | chr6_4:85548230-85548249 | None:intergenic | 20.0% |
| !! | ATGTAAAAAATATGTGGATA+TGG | + | chr6_4:85548881-85548900 | None:intergenic | 20.0% |
| !!! | AAAAATGACTAGTTAAACTA+AGG | + | chr6_4:85549100-85549119 | None:intergenic | 20.0% |
| !!! | TAGTTTAACTAGTCATTTTT+AGG | - | chr6_4:85549100-85549119 | Msa1001690:intron | 20.0% |
| !!! | CAATATTAATGGGTTTATAT+AGG | - | chr6_4:85549249-85549268 | Msa1001690:intron | 20.0% |
| !! | AGTATAGAAAAATCCAATAT+AGG | + | chr6_4:85549365-85549384 | None:intergenic | 20.0% |
| !!! | ATACTATTTAGGTTTTACTT+TGG | + | chr6_4:85549523-85549542 | None:intergenic | 20.0% |
| !!! | ATACTAGGCTAAATTTTATT+TGG | + | chr6_4:85549557-85549576 | None:intergenic | 20.0% |
| !! | AGTAAACAGTATTATATACT+AGG | + | chr6_4:85549572-85549591 | None:intergenic | 20.0% |
| !!! | ATATTTTGTTATGGTGTAAA+TGG | + | chr6_4:85550502-85550521 | None:intergenic | 20.0% |
| !! | AAATATGATTAAAATCAGCA+TGG | - | chr6_4:85550516-85550535 | Msa1001690:intron | 20.0% |
| !! | ATAAATAAATGACACAAAGT+GGG | + | chr6_4:85550649-85550668 | None:intergenic | 20.0% |
| !! | TATAAATAAATGACACAAAG+TGG | + | chr6_4:85550650-85550669 | None:intergenic | 20.0% |
| !!! | TGTTGTTTTTACTTTTTACA+CGG | - | chr6_4:85550729-85550748 | Msa1001690:intron | 20.0% |
| !!! | AATAGAGCATTAAAAACAAA+AGG | - | chr6_4:85551013-85551032 | Msa1001690:intron | 20.0% |
| !! | CAACAACAAATGATTATTAT+TGG | + | chr6_4:85551829-85551848 | None:intergenic | 20.0% |
| !! | AATAAGAAATAAAAGATGGT+GGG | - | chr6_4:85551997-85552016 | Msa1001690:intron | 20.0% |
| !!! | TTTTTTTTTACCATTGTACA+TGG | - | chr6_4:85552138-85552157 | Msa1001690:intron | 20.0% |
| !! | ACAAAAATATCATTCACTAA+TGG | - | chr6_4:85552323-85552342 | Msa1001690:intron | 20.0% |
| !!! | CAGAATTATATGTCATTTTA+CGG | + | chr6_4:85552438-85552457 | None:intergenic | 20.0% |
| !! | AAAATACAAGAGAGAAAATA+TGG | + | chr6_4:85552571-85552590 | None:intergenic | 20.0% |
| !! | AATTATTATACCAGAGATAA+AGG | - | chr6_4:85552641-85552660 | Msa1001690:intron | 20.0% |
| !! | AAGTAACATTGATATTTCAT+TGG | - | chr6_4:85552865-85552884 | Msa1001690:CDS | 20.0% |
| !! | TTGTAAAACGACTTATAATT+TGG | - | chr6_4:85552890-85552909 | Msa1001690:CDS | 20.0% |
| !! | TGTAAAACGACTTATAATTT+GGG | - | chr6_4:85552891-85552910 | Msa1001690:CDS | 20.0% |
| !!! | TTTTATTACACTAAATGAGT+CGG | + | chr6_4:85553019-85553038 | None:intergenic | 20.0% |
| !! | TGAACACCTAATTAAATTAA+AGG | + | chr6_4:85553076-85553095 | None:intergenic | 20.0% |
| !!! | TACATATGAGTTAGTTTTAA+GGG | + | chr6_4:85553110-85553129 | None:intergenic | 20.0% |
| !!! | ATACATATGAGTTAGTTTTA+AGG | + | chr6_4:85553111-85553130 | None:intergenic | 20.0% |
| !!! | CTACATACATTTTAACATTA+AGG | + | chr6_4:85553531-85553550 | None:intergenic | 20.0% |
| !! | CTTAATGTTAAAATGTATGT+AGG | - | chr6_4:85553529-85553548 | Msa1001690:CDS | 20.0% |
| !! | TCAGCAATAAAAATTTAGTA+TGG | - | chr6_4:85554020-85554039 | Msa1001690:exon | 20.0% |
| !!! | TTCATCTCTATTTCCTTTTT+TGG | - | chr6_4:85547668-85547687 | Msa1001690:three_prime_UTR | 25.0% |
| !!! | TCATCTCTATTTCCTTTTTT+GGG | - | chr6_4:85547669-85547688 | Msa1001690:three_prime_UTR | 25.0% |
| !! | TGGTAATGATGATTAATTGA+GGG | + | chr6_4:85547823-85547842 | None:intergenic | 25.0% |
| !! | ATGGTAATGATGATTAATTG+AGG | + | chr6_4:85547824-85547843 | None:intergenic | 25.0% |
| ! | TGAATTTGATCAACAATGAT+GGG | + | chr6_4:85547959-85547978 | None:intergenic | 25.0% |
| ! | AATTCAGATTGAAGTTGAAA+TGG | - | chr6_4:85547973-85547992 | Msa1001690:intron | 25.0% |
| !! | TATTTGGGTTATATAGTTCT+TGG | - | chr6_4:85548100-85548119 | Msa1001690:intron | 25.0% |
| ! | TATTCCAACAAATGAAAACA+TGG | - | chr6_4:85548276-85548295 | Msa1001690:intron | 25.0% |
| !!! | GTTGTTTTTAGAAAGAATTC+AGG | - | chr6_4:85548298-85548317 | Msa1001690:intron | 25.0% |
| !! | ATGCTTGAGATTTTGTATAT+GGG | - | chr6_4:85548375-85548394 | Msa1001690:intron | 25.0% |
| !! | AGATTTTGTATATGGGTATT+AGG | - | chr6_4:85548382-85548401 | Msa1001690:intron | 25.0% |
| !! | GATTTTGTATATGGGTATTA+GGG | - | chr6_4:85548383-85548402 | Msa1001690:intron | 25.0% |
| !! | TTTATAAGAAGAAAGAGTGT+AGG | - | chr6_4:85548410-85548429 | Msa1001690:intron | 25.0% |
| !!! | AGTTACTTTGTTTTGTCTAA+TGG | - | chr6_4:85548534-85548553 | Msa1001690:intron | 25.0% |
| ! | AATTATATCACAAGCAATCT+TGG | - | chr6_4:85548666-85548685 | Msa1001690:intron | 25.0% |
| !!! | TATTATTAGGCCATTTTGAA+TGG | - | chr6_4:85548772-85548791 | Msa1001690:intron | 25.0% |
| !!! | ATTATTAGGCCATTTTGAAT+GGG | - | chr6_4:85548773-85548792 | Msa1001690:intron | 25.0% |
| ! | TTCAACACAATTATTGTGTT+AGG | + | chr6_4:85548803-85548822 | None:intergenic | 25.0% |
| ! | ACACAATAATTGTGTTGAAT+AGG | - | chr6_4:85548804-85548823 | Msa1001690:intron | 25.0% |
| ! | AATAATTGTGTTGAATAGGT+AGG | - | chr6_4:85548808-85548827 | Msa1001690:intron | 25.0% |
| !! | TTATTTGAGTGTTGTACATT+TGG | + | chr6_4:85548838-85548857 | None:intergenic | 25.0% |
| !!! | CTACATTTGAGTATTTTAGT+GGG | + | chr6_4:85549040-85549059 | None:intergenic | 25.0% |
| !!! | TCTACATTTGAGTATTTTAG+TGG | + | chr6_4:85549041-85549060 | None:intergenic | 25.0% |
| ! | CAAATGTAGAGAATTATATG+TGG | - | chr6_4:85549051-85549070 | Msa1001690:intron | 25.0% |
| ! | ATGTGAAATATTGCACAAAT+TGG | + | chr6_4:85549159-85549178 | None:intergenic | 25.0% |
| ! | TCAAATGTAGAGAATCATAT+GGG | + | chr6_4:85549192-85549211 | None:intergenic | 25.0% |
| ! | ATGGGTTTATATAGGTTTAA+TGG | - | chr6_4:85549257-85549276 | Msa1001690:intron | 25.0% |
| ! | TGGGTTTATATAGGTTTAAT+GGG | - | chr6_4:85549258-85549277 | Msa1001690:intron | 25.0% |
| ! | AACTTGAATGTGCAATATAT+GGG | + | chr6_4:85549294-85549313 | None:intergenic | 25.0% |
| ! | TAACTTGAATGTGCAATATA+TGG | + | chr6_4:85549295-85549314 | None:intergenic | 25.0% |
| !! | ACATTCAAGTTACTTTATCT+AGG | - | chr6_4:85549303-85549322 | Msa1001690:intron | 25.0% |
| ! | TTACTTTATCTAGGTTCAAT+TGG | - | chr6_4:85549312-85549331 | Msa1001690:intron | 25.0% |
| ! | AATGTAAACCATACCTATAT+TGG | - | chr6_4:85549349-85549368 | Msa1001690:intron | 25.0% |
| ! | AGAAAAATCCAATATAGGTA+TGG | + | chr6_4:85549360-85549379 | None:intergenic | 25.0% |
| !!! | TATTTTTTGTGGATTCTCTT+AGG | - | chr6_4:85549468-85549487 | Msa1001690:intron | 25.0% |
| ! | TTTAATGTTGGAATTAGAGA+GGG | + | chr6_4:85549897-85549916 | None:intergenic | 25.0% |
| !! | TTTTAATGTTGGAATTAGAG+AGG | + | chr6_4:85549898-85549917 | None:intergenic | 25.0% |
| ! | CAGATATTCATAGGAATATA+CGG | - | chr6_4:85550321-85550340 | Msa1001690:intron | 25.0% |
| ! | ATTAACCTGAATTTAAACTC+AGG | + | chr6_4:85550403-85550422 | None:intergenic | 25.0% |
| !!! | ACTAATCATTCGAGTTTTAT+AGG | + | chr6_4:85550456-85550475 | None:intergenic | 25.0% |
| !!! | ACACGGTAATTTTTTTATAG+TGG | - | chr6_4:85550746-85550765 | Msa1001690:intron | 25.0% |
| ! | CGGTAATTATCATAATTGAA+AGG | - | chr6_4:85550848-85550867 | Msa1001690:intron | 25.0% |
| !! | TGTATTTTACTGATATCCTT+TGG | - | chr6_4:85550940-85550959 | Msa1001690:intron | 25.0% |
| ! | TGTTTAATCTTGCTTTCAAT+AGG | + | chr6_4:85551364-85551383 | None:intergenic | 25.0% |
| ! | GAATAAGAAATAAAAGATGG+TGG | - | chr6_4:85551996-85552015 | Msa1001690:intron | 25.0% |
| ! | ATAAGAAATAAAAGATGGTG+GGG | - | chr6_4:85551998-85552017 | Msa1001690:intron | 25.0% |
| ! | TTAAGAAAGAGAAAATGATG+TGG | - | chr6_4:85552075-85552094 | Msa1001690:intron | 25.0% |
| ! | AATATCATTCACTAATGGTA+TGG | - | chr6_4:85552328-85552347 | Msa1001690:intron | 25.0% |
| !! | TGAAACATAATTTAGAACAG+AGG | - | chr6_4:85552480-85552499 | Msa1001690:intron | 25.0% |
| !! | GAAACATAATTTAGAACAGA+GGG | - | chr6_4:85552481-85552500 | Msa1001690:intron | 25.0% |
| !! | AATGAAAAGTGTAGATTACA+TGG | - | chr6_4:85552613-85552632 | Msa1001690:intron | 25.0% |
| ! | GTTTAACGTTTATACCATAT+TGG | - | chr6_4:85553170-85553189 | Msa1001690:CDS | 25.0% |
| ! | GCATATATATTATGATCCAA+AGG | + | chr6_4:85553247-85553266 | None:intergenic | 25.0% |
| ! | GTTTGATGAAAAAAGGATAA+TGG | + | chr6_4:85553271-85553290 | None:intergenic | 25.0% |
| ! | AAGCGTTCAAAAAATGTTTA+TGG | + | chr6_4:85553506-85553525 | None:intergenic | 25.0% |
| !! | ATGCGTTAGTGTTATATTTT+CGG | + | chr6_4:85553593-85553612 | None:intergenic | 25.0% |
| ! | AATTGTGAAAACAAATGGAT+TGG | - | chr6_4:85553691-85553710 | Msa1001690:CDS | 25.0% |
| !!! | TTTTAAGACAATTTGTACGT+TGG | + | chr6_4:85553915-85553934 | None:intergenic | 25.0% |
| ! | AATTGTCTTAAAATGACCAA+AGG | - | chr6_4:85553922-85553941 | Msa1001690:CDS | 25.0% |
| ! | TTTGACATGAAGTGTTACAA+AGG | + | chr6_4:85547550-85547569 | None:intergenic | 30.0% |
| !! | TCTTAGCAGCATGTTTTTAT+CGG | - | chr6_4:85547600-85547619 | Msa1001690:three_prime_UTR | 30.0% |
| !!! | TCTATTTCCTTTTTTGGGTT+TGG | - | chr6_4:85547674-85547693 | Msa1001690:three_prime_UTR | 30.0% |
| !! | TTAGGTGTTGTTTGATGTAA+AGG | + | chr6_4:85547719-85547738 | None:intergenic | 30.0% |
| AAAAATTTCCATTTCAACCG+TGG | + | chr6_4:85547795-85547814 | None:intergenic | 30.0% | |
| ACCATATTAATGTTCATAGG+TGG | - | chr6_4:85547839-85547858 | Msa1001690:CDS | 30.0% | |
| ACCACCTATGAACATTAATA+TGG | + | chr6_4:85547843-85547862 | None:intergenic | 30.0% | |
| AAATCTTTACCTCCATGTTA+GGG | - | chr6_4:85547864-85547883 | Msa1001690:CDS | 30.0% | |
| AATGAAATAAAGCCCTAACA+TGG | + | chr6_4:85547879-85547898 | None:intergenic | 30.0% | |
| GAATTTGATCAACAATGATG+GGG | + | chr6_4:85547958-85547977 | None:intergenic | 30.0% | |
| CTGAATTTGATCAACAATGA+TGG | + | chr6_4:85547960-85547979 | None:intergenic | 30.0% | |
| TTGATAAGGAAGTTATGTGA+AGG | + | chr6_4:85548012-85548031 | None:intergenic | 30.0% | |
| ! | CTCCATTTTATAGGTCTATT+TGG | - | chr6_4:85548136-85548155 | Msa1001690:intron | 30.0% |
| CTCCAAATAGACCTATAAAA+TGG | + | chr6_4:85548141-85548160 | None:intergenic | 30.0% | |
| TTTAGTACTTGTTTAGCACT+AGG | + | chr6_4:85548187-85548206 | None:intergenic | 30.0% | |
| ! | ACAACCATGTTTTCATTTGT+TGG | + | chr6_4:85548283-85548302 | None:intergenic | 30.0% |
| CATATACAAAATCTCAAGCA+TGG | + | chr6_4:85548376-85548395 | None:intergenic | 30.0% | |
| ! | CATGCTTGAGATTTTGTATA+TGG | - | chr6_4:85548374-85548393 | Msa1001690:intron | 30.0% |
| ! | GTATCTTTTGAACAATGTAG+AGG | - | chr6_4:85548432-85548451 | Msa1001690:intron | 30.0% |
| ! | GTTACAAACACTTGTTACAT+GGG | - | chr6_4:85548461-85548480 | Msa1001690:intron | 30.0% |
| GAAACACACTCTTTATCTTA+TGG | - | chr6_4:85548483-85548502 | Msa1001690:intron | 30.0% | |
| ! | TATCTTATGGCTACTGTTTT+TGG | - | chr6_4:85548496-85548515 | Msa1001690:intron | 30.0% |
| !! | ATCTTATGGCTACTGTTTTT+GGG | - | chr6_4:85548497-85548516 | Msa1001690:intron | 30.0% |
| !!! | CTTTGTTTTGTCTAATGGAT+TGG | - | chr6_4:85548539-85548558 | Msa1001690:intron | 30.0% |
| TTGCTTGTGATATAATTGAG+AGG | + | chr6_4:85548663-85548682 | None:intergenic | 30.0% | |
| TTAGGTATTCCCATTCAAAA+TGG | + | chr6_4:85548785-85548804 | None:intergenic | 30.0% | |
| CTCAAATGTAGAGAATCATA+TGG | + | chr6_4:85549193-85549212 | None:intergenic | 30.0% | |
| !! | TTACTTTGGTTCTCAGTTTA+TGG | + | chr6_4:85549509-85549528 | None:intergenic | 30.0% |
| ! | ACCATCATGATAATTTGTAC+AGG | - | chr6_4:85549619-85549638 | Msa1001690:intron | 30.0% |
| ACCTGTACAAATTATCATGA+TGG | + | chr6_4:85549623-85549642 | None:intergenic | 30.0% | |
| AAAGAGAGGAGAAAAAGTAA+CGG | - | chr6_4:85549719-85549738 | Msa1001690:intron | 30.0% | |
| TTGAAGACATTGAAATTGAG+AGG | + | chr6_4:85549831-85549850 | None:intergenic | 30.0% | |
| TCCACATAACAGATATTCAT+AGG | - | chr6_4:85550312-85550331 | Msa1001690:intron | 30.0% | |
| TCCTATGAATATCTGTTATG+TGG | + | chr6_4:85550316-85550335 | None:intergenic | 30.0% | |
| TATACGGCTATTAAAAAGTG+CGG | - | chr6_4:85550337-85550356 | Msa1001690:intron | 30.0% | |
| CTTAACCTGAGTTTAAATTC+AGG | - | chr6_4:85550395-85550414 | Msa1001690:intron | 30.0% | |
| TTATCCTTCTAAACAAAACC+AGG | + | chr6_4:85550696-85550715 | None:intergenic | 30.0% | |
| !!! | GGTAATTTTTTTATAGTGGC+CGG | - | chr6_4:85550750-85550769 | Msa1001690:intron | 30.0% |
| !!! | GTAATTTTTTTATAGTGGCC+GGG | - | chr6_4:85550751-85550770 | Msa1001690:intron | 30.0% |
| !!! | TAATTTTTTTATAGTGGCCG+GGG | - | chr6_4:85550752-85550771 | Msa1001690:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | + | chr6_4:85550791-85550810 | None:intergenic | 30.0% | |
| ! | ATTTTACTGATATCCTTTGG+TGG | - | chr6_4:85550943-85550962 | Msa1001690:intron | 30.0% |
| ! | AGAAAACTTTTATCCACCAA+AGG | + | chr6_4:85550959-85550978 | None:intergenic | 30.0% |
| AGATCTCATGAAGAATATGT+TGG | - | chr6_4:85551052-85551071 | Msa1001690:intron | 30.0% | |
| CAACAACGAAAATTGATTGA+TGG | - | chr6_4:85551258-85551277 | Msa1001690:intron | 30.0% | |
| GATTAAACATGTTGAACCAT+TGG | - | chr6_4:85551375-85551394 | Msa1001690:intron | 30.0% | |
| GATTAAGAGAGTGAAAAACT+TGG | + | chr6_4:85551753-85551772 | None:intergenic | 30.0% | |
| GTGTTGAATGATAAAACCAT+TGG | - | chr6_4:85552025-85552044 | Msa1001690:intron | 30.0% | |
| ! | TTCAATTTTATCCACTCCAA+TGG | + | chr6_4:85552044-85552063 | None:intergenic | 30.0% |
| TTGGAGTGGATAAAATTGAA+TGG | - | chr6_4:85552044-85552063 | Msa1001690:intron | 30.0% | |
| TGGAGTGGATAAAATTGAAT+GGG | - | chr6_4:85552045-85552064 | Msa1001690:intron | 30.0% | |
| CTTATAATAATTACTCCTCG+CGG | - | chr6_4:85552212-85552231 | Msa1001690:intron | 30.0% | |
| ! | ATATATAATTTAGAACCGCG+AGG | + | chr6_4:85552230-85552249 | None:intergenic | 30.0% |
| ! | TTTAGGTTTACCTTTATCTC+TGG | + | chr6_4:85552654-85552673 | None:intergenic | 30.0% |
| !!! | TACGAAGGAAGTACTTTTTT+AGG | + | chr6_4:85552671-85552690 | None:intergenic | 30.0% |
| ! | TACCAAATTATACGACGTTT+TGG | - | chr6_4:85552689-85552708 | Msa1001690:intron | 30.0% |
| ! | ACCAAATTATACGACGTTTT+GGG | - | chr6_4:85552690-85552709 | Msa1001690:intron | 30.0% |
| AAAGAACCTCGAGATATATT+TGG | + | chr6_4:85553148-85553167 | None:intergenic | 30.0% | |
| ATATTATGATCCAAAGGACT+AGG | + | chr6_4:85553241-85553260 | None:intergenic | 30.0% | |
| ! | CTTAATTAAAAGCGTGTATG+TGG | - | chr6_4:85553290-85553309 | Msa1001690:CDS | 30.0% |
| AGGCAAATTGTGAAAACAAA+TGG | - | chr6_4:85553686-85553705 | Msa1001690:CDS | 30.0% | |
| !! | AACAAATGGATTGGATTTGT+TGG | - | chr6_4:85553700-85553719 | Msa1001690:CDS | 30.0% |
| TCGCACATTAAAATTTCCTT+TGG | + | chr6_4:85553941-85553960 | None:intergenic | 30.0% | |
| ACAATCAAGATGGAGATCTT+AGG | - | chr6_4:85547500-85547519 | Msa1001690:three_prime_UTR | 35.0% | |
| !! | ATAATGGATTTGCTCTTAGG+AGG | + | chr6_4:85547631-85547650 | None:intergenic | 35.0% |
| !! | CACATAATGGATTTGCTCTT+AGG | + | chr6_4:85547634-85547653 | None:intergenic | 35.0% |
| GAGAAATCCAAACCCAAAAA+AGG | + | chr6_4:85547684-85547703 | None:intergenic | 35.0% | |
| GAAATCTTTACCTCCATGTT+AGG | - | chr6_4:85547863-85547882 | Msa1001690:CDS | 35.0% | |
| GTAGCACAAGTGAAAATTTG+AGG | - | chr6_4:85548062-85548081 | Msa1001690:intron | 35.0% | |
| GTTTCAACATTTGCAAGTTG+TGG | - | chr6_4:85548250-85548269 | Msa1001690:intron | 35.0% | |
| TCATTCCACAAGTACTTCTT+GGG | - | chr6_4:85548335-85548354 | Msa1001690:intron | 35.0% | |
| TACAAAATCTCAAGCATGGA+GGG | + | chr6_4:85548372-85548391 | None:intergenic | 35.0% | |
| ATACAAAATCTCAAGCATGG+AGG | + | chr6_4:85548373-85548392 | None:intergenic | 35.0% | |
| ! | TCTTTTGAACAATGTAGAGG+AGG | - | chr6_4:85548435-85548454 | Msa1001690:intron | 35.0% |
| ! | GGTTACAAACACTTGTTACA+TGG | - | chr6_4:85548460-85548479 | Msa1001690:intron | 35.0% |
| !! | CTAATGGATTGGAATTCAGA+AGG | - | chr6_4:85548550-85548569 | Msa1001690:intron | 35.0% |
| TGGAATTCAGAAGGTTTGAA+AGG | - | chr6_4:85548559-85548578 | Msa1001690:intron | 35.0% | |
| GGAATTCAGAAGGTTTGAAA+GGG | - | chr6_4:85548560-85548579 | Msa1001690:intron | 35.0% | |
| CGTGTCTTGAATTTATGCTT+TGG | + | chr6_4:85548621-85548640 | None:intergenic | 35.0% | |
| TGAGAGAAACTAACATCATG+AGG | + | chr6_4:85548702-85548721 | None:intergenic | 35.0% | |
| ! | TACTAGTTTGCATAACTGAG+AGG | - | chr6_4:85549787-85549806 | Msa1001690:intron | 35.0% |
| AACTGAGAGGAAACAATTGA+AGG | - | chr6_4:85549800-85549819 | Msa1001690:intron | 35.0% | |
| ! | ATATTGCTGTTGAAGTTGTC+AGG | - | chr6_4:85549850-85549869 | Msa1001690:intron | 35.0% |
| CTAGGTTATCTATTGAGGAA+CGG | + | chr6_4:85549952-85549971 | None:intergenic | 35.0% | |
| GTCAACTAGGTTATCTATTG+AGG | + | chr6_4:85549957-85549976 | None:intergenic | 35.0% | |
| ! | ATACGGCTATTAAAAAGTGC+GGG | - | chr6_4:85550338-85550357 | Msa1001690:intron | 35.0% |
| !!! | TAATCCTAGCTGTCTTGTTT+TGG | + | chr6_4:85550611-85550630 | None:intergenic | 35.0% |
| !! | GCTACATGGATTAGAATGTA+TGG | + | chr6_4:85550674-85550693 | None:intergenic | 35.0% |
| CATAAAATATGCAAGGTCTG+GGG | + | chr6_4:85550784-85550803 | None:intergenic | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | + | chr6_4:85550785-85550804 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | + | chr6_4:85550786-85550805 | None:intergenic | 35.0% | |
| AAGATTATCTTGCTAGCTAC+TGG | - | chr6_4:85551175-85551194 | Msa1001690:intron | 35.0% | |
| GAGAAAGAGACTTTGGATAA+TGG | - | chr6_4:85551559-85551578 | Msa1001690:intron | 35.0% | |
| ! | AAAGAGACTTTGGATAATGG+AGG | - | chr6_4:85551562-85551581 | Msa1001690:intron | 35.0% |
| !! | AAGAGACTTTGGATAATGGA+GGG | - | chr6_4:85551563-85551582 | Msa1001690:intron | 35.0% |
| TTTCTCTACAGATAGAGACT+TGG | - | chr6_4:85551699-85551718 | Msa1001690:CDS | 35.0% | |
| GAGACTTGGATCATTTGATT+TGG | - | chr6_4:85551713-85551732 | Msa1001690:CDS | 35.0% | |
| !! | AAATAAAAGATGGTGGGGTA+GGG | - | chr6_4:85552003-85552022 | Msa1001690:intron | 35.0% |
| GAATGATAAAACCATTGGAG+TGG | - | chr6_4:85552030-85552049 | Msa1001690:intron | 35.0% | |
| ! | AGAAAATGATGTGGAGTGTT+GGG | - | chr6_4:85552084-85552103 | Msa1001690:intron | 35.0% |
| ! | AGTGTTGGGAATTGAAAAAG+TGG | - | chr6_4:85552098-85552117 | Msa1001690:intron | 35.0% |
| GTGTTGGGAATTGAAAAAGT+GGG | - | chr6_4:85552099-85552118 | Msa1001690:intron | 35.0% | |
| !! | ATTGAAAAAGTGGGTGTTGA+AGG | - | chr6_4:85552108-85552127 | Msa1001690:intron | 35.0% |
| TTACCATTGTACATGGTCTA+AGG | - | chr6_4:85552145-85552164 | Msa1001690:intron | 35.0% | |
| TTTCCTTAGACCATGTACAA+TGG | + | chr6_4:85552151-85552170 | None:intergenic | 35.0% | |
| TTGTACATGGTCTAAGGAAA+CGG | - | chr6_4:85552151-85552170 | Msa1001690:intron | 35.0% | |
| !!! | GAGCGATTTTTAATTTGCGA+CGG | - | chr6_4:85552929-85552948 | Msa1001690:CDS | 35.0% |
| GACGGAGATAGATTAAAAGT+TGG | - | chr6_4:85552947-85552966 | Msa1001690:CDS | 35.0% | |
| TATAGGCCAAATATATCTCG+AGG | - | chr6_4:85553139-85553158 | Msa1001690:CDS | 35.0% | |
| GTGGATGTCTATTTCAAAGT+TGG | - | chr6_4:85553309-85553328 | Msa1001690:CDS | 35.0% | |
| ATTCATCGCTCTTGAAACTA+AGG | - | chr6_4:85553341-85553360 | Msa1001690:CDS | 35.0% | |
| TCAGAACGTAGGATTTACTA+TGG | - | chr6_4:85553633-85553652 | Msa1001690:CDS | 35.0% | |
| CAGAACGTAGGATTTACTAT+GGG | - | chr6_4:85553634-85553653 | Msa1001690:CDS | 35.0% | |
| ! | TTGTTTTCACAATTTGCCTC+TGG | + | chr6_4:85553685-85553704 | None:intergenic | 35.0% |
| !! | GGATTGGATTTGTTGGAAAA+TGG | - | chr6_4:85553707-85553726 | Msa1001690:CDS | 35.0% |
| ATGAATCAGAGAAGTTTCCA+TGG | + | chr6_4:85553811-85553830 | None:intergenic | 35.0% | |
| CGAGTGCTATATGCTAATAA+AGG | - | chr6_4:85553995-85554014 | Msa1001690:CDS | 35.0% | |
| GAAATAAAGCCCTAACATGG+AGG | + | chr6_4:85547876-85547895 | None:intergenic | 40.0% | |
| TAGCACTAGGAATCATTGCA+AGG | + | chr6_4:85548174-85548193 | None:intergenic | 40.0% | |
| CTCATTCCACAAGTACTTCT+TGG | - | chr6_4:85548334-85548353 | Msa1001690:intron | 40.0% | |
| TTGAACAATGTAGAGGAGGT+TGG | - | chr6_4:85548439-85548458 | Msa1001690:intron | 40.0% | |
| AGCATAAATTCAAGACACGC+TGG | - | chr6_4:85548622-85548641 | Msa1001690:intron | 40.0% | |
| !! | CTTTGGTTCTCAGTTTATGG+AGG | + | chr6_4:85549506-85549525 | None:intergenic | 40.0% |
| TACATGTGTCAGAGTCAACT+AGG | + | chr6_4:85549970-85549989 | None:intergenic | 40.0% | |
| CTAGGTCATCTATTGAGTGA+CGG | - | chr6_4:85550176-85550195 | Msa1001690:intron | 40.0% | |
| TGCGTGTACGATATTCATCT+TGG | - | chr6_4:85550566-85550585 | Msa1001690:intron | 40.0% | |
| TCAACCAAAACAAGACAGCT+AGG | - | chr6_4:85550604-85550623 | Msa1001690:intron | 40.0% | |
| ACATTCTAATCCATGTAGCC+TGG | - | chr6_4:85550675-85550694 | Msa1001690:intron | 40.0% | |
| CTAAACAAAACCAGGCTACA+TGG | + | chr6_4:85550688-85550707 | None:intergenic | 40.0% | |
| !!! | GTAGCCTGGTTTTGTTTAGA+AGG | - | chr6_4:85550689-85550708 | Msa1001690:intron | 40.0% |
| GATCACTGAGATTACTCTCT+TGG | + | chr6_4:85550919-85550938 | None:intergenic | 40.0% | |
| GCTTTCAATAGGCTCATTGT+GGG | + | chr6_4:85551353-85551372 | None:intergenic | 40.0% | |
| TGCTTTCAATAGGCTCATTG+TGG | + | chr6_4:85551354-85551373 | None:intergenic | 40.0% | |
| AACATGTTGAACCATTGGAG+TGG | - | chr6_4:85551380-85551399 | Msa1001690:intron | 40.0% | |
| ACATGTTGAACCATTGGAGT+GGG | - | chr6_4:85551381-85551400 | Msa1001690:intron | 40.0% | |
| TGGGGTTATTGAAGATGAGA+TGG | - | chr6_4:85551400-85551419 | Msa1001690:intron | 40.0% | |
| GGTTATTGAAGATGAGATGG+TGG | - | chr6_4:85551403-85551422 | Msa1001690:intron | 40.0% | |
| ACACAGAGAGAAAGAGACTT+TGG | - | chr6_4:85551552-85551571 | Msa1001690:intron | 40.0% | |
| !! | GAAATAAAAGATGGTGGGGT+AGG | - | chr6_4:85552002-85552021 | Msa1001690:intron | 40.0% |
| GAGAAAATGATGTGGAGTGT+TGG | - | chr6_4:85552083-85552102 | Msa1001690:intron | 40.0% | |
| CGTCGTATAATTTGGTACGA+AGG | + | chr6_4:85552686-85552705 | None:intergenic | 40.0% | |
| GCCCAAAACGTCGTATAATT+TGG | + | chr6_4:85552694-85552713 | None:intergenic | 40.0% | |
| TGTTGGAAAATGGAGTGATG+AGG | - | chr6_4:85553717-85553736 | Msa1001690:CDS | 40.0% | |
| GTTGGAAAATGGAGTGATGA+GGG | - | chr6_4:85553718-85553737 | Msa1001690:CDS | 40.0% | |
| ACAGAGATGCAGATAATCCA+TGG | - | chr6_4:85553791-85553810 | Msa1001690:CDS | 40.0% | |
| GTGAAATCGAAGCTGATGTT+AGG | + | chr6_4:85553848-85553867 | None:intergenic | 40.0% | |
| ATTGCTACATTGCATGGAAG+TGG | + | chr6_4:85553974-85553993 | None:intergenic | 40.0% | |
| ACTCGAATTGCTACATTGCA+TGG | + | chr6_4:85553980-85553999 | None:intergenic | 40.0% | |
| TGAAACTGTGGTGGCTGAAA+CGG | + | chr6_4:85547765-85547784 | None:intergenic | 45.0% | |
| CACAGTTTCAAGCATGTCCA+CGG | - | chr6_4:85547775-85547794 | Msa1001690:CDS | 45.0% | |
| AAGCATGTCCACGGTTGAAA+TGG | - | chr6_4:85547784-85547803 | Msa1001690:CDS | 45.0% | |
| !! | GTGTTCCCAAGAAGTACTTG+TGG | + | chr6_4:85548343-85548362 | None:intergenic | 45.0% |
| ACACGCTGGAGAAACTATTG+TGG | - | chr6_4:85548636-85548655 | Msa1001690:intron | 45.0% | |
| CTCACACAAGTGCATATCCT+TGG | + | chr6_4:85549012-85549031 | None:intergenic | 45.0% | |
| !! | GATTCTCTTAGGAGCGTCAA+TGG | - | chr6_4:85549479-85549498 | Msa1001690:intron | 45.0% |
| TCATTCCTCCCTTGGAAAGA+CGG | - | chr6_4:85549660-85549679 | Msa1001690:intron | 45.0% | |
| ATCTGGATCCGTCTTTCCAA+GGG | + | chr6_4:85549671-85549690 | None:intergenic | 45.0% | |
| AATCTGGATCCGTCTTTCCA+AGG | + | chr6_4:85549672-85549691 | None:intergenic | 45.0% | |
| CTCACTGCTTTCTGACAATC+TGG | + | chr6_4:85549688-85549707 | None:intergenic | 45.0% | |
| GATTGTCAGAAAGCAGTGAG+AGG | - | chr6_4:85549688-85549707 | Msa1001690:intron | 45.0% | |
| GAGAGGATGCAGAAAAAGAG+AGG | - | chr6_4:85549705-85549724 | Msa1001690:intron | 45.0% | |
| GGTTATCTATTGAGGAACGG+AGG | + | chr6_4:85549949-85549968 | None:intergenic | 45.0% | |
| ! | GCTCACGAGGACTTTTTACA+CGG | - | chr6_4:85550828-85550847 | Msa1001690:intron | 45.0% |
| TTCAATAGGCTCATTGTGGG+TGG | + | chr6_4:85551350-85551369 | None:intergenic | 45.0% | |
| CATGTTGAACCATTGGAGTG+GGG | - | chr6_4:85551382-85551401 | Msa1001690:intron | 45.0% | |
| CTTCAATAACCCCACTCCAA+TGG | + | chr6_4:85551394-85551413 | None:intergenic | 45.0% | |
| !! | GAAGATGAGATGGTGGAAAG+AGG | - | chr6_4:85551410-85551429 | Msa1001690:intron | 45.0% |
| ACCAATCATGTTGCAACACG+TGG | + | chr6_4:85551589-85551608 | None:intergenic | 45.0% | |
| GACAGTGCATATCAGAACGT+AGG | - | chr6_4:85553622-85553641 | Msa1001690:CDS | 45.0% | |
| !! | ATAATAATAATAATAATTAG+TGG | + | chr6_4:85548743-85548762 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTATTTTTTG+TGG | - | chr6_4:85549457-85549476 | Msa1001690:intron | 5.0% |
| !! | AAAAAAAATTATGAAAAATA+TGG | - | chr6_4:85550032-85550051 | Msa1001690:intron | 5.0% |
| !! | GTTTATAATTAAATTAAAAA+AGG | + | chr6_4:85551930-85551949 | None:intergenic | 5.0% |
| !! | TAAATAATTAATTGTATAAT+AGG | - | chr6_4:85552840-85552859 | Msa1001690:CDS | 5.0% |
| GGACATGCTTGAAACTGTGG+TGG | + | chr6_4:85547774-85547793 | None:intergenic | 50.0% | |
| CGTGGACATGCTTGAAACTG+TGG | + | chr6_4:85547777-85547796 | None:intergenic | 50.0% | |
| GGAATGAGGTGTAAGGTGGA+AGG | + | chr6_4:85549647-85549666 | None:intergenic | 50.0% | |
| CAAGGGAGGAATGAGGTGTA+AGG | + | chr6_4:85549654-85549673 | None:intergenic | 50.0% | |
| CTTACACCTCATTCCTCCCT+TGG | - | chr6_4:85549652-85549671 | Msa1001690:intron | 50.0% | |
| GTCTTTCCAAGGGAGGAATG+AGG | + | chr6_4:85549661-85549680 | None:intergenic | 50.0% | |
| GGTCATCTATTGAGTGACGG+AGG | - | chr6_4:85550179-85550198 | Msa1001690:intron | 50.0% | |
| CCTCGTGAGCTTAACTCAAC+TGG | + | chr6_4:85550818-85550837 | None:intergenic | 50.0% | |
| CCAGTTGAGTTAAGCTCACG+AGG | - | chr6_4:85550815-85550834 | Msa1001690:intron | 50.0% | |
| GTCAATTCACGTGCCTTGTC+TGG | + | chr6_4:85551525-85551544 | None:intergenic | 50.0% | |
| GACAAGGCACGTGAATTGAC+AGG | - | chr6_4:85551525-85551544 | Msa1001690:intron | 50.0% | |
| GCCACGTGTTGCAACATGAT+TGG | - | chr6_4:85551585-85551604 | Msa1001690:intron | 50.0% | |
| CAAGTGTGCACCTAGTCCTT+TGG | - | chr6_4:85553228-85553247 | Msa1001690:CDS | 50.0% | |
| TGAACGACAGTTGCATCCAG+AGG | - | chr6_4:85553666-85553685 | Msa1001690:CDS | 50.0% | |
| GGGAGGAATGAGGTGTAAGG+TGG | + | chr6_4:85549651-85549670 | None:intergenic | 55.0% | |
| TGGATCCGTCTTTCCAAGGG+AGG | + | chr6_4:85549668-85549687 | None:intergenic | 55.0% | |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | + | chr6_4:85550772-85550791 | None:intergenic | 55.0% |
| GGATTCGCCACGTGACCTTT+CGG | + | chr6_4:85551469-85551488 | None:intergenic | 55.0% | |
| AAAGGTCACGTGGCGAATCC+TGG | - | chr6_4:85551469-85551488 | Msa1001690:intron | 55.0% | |
| TCACGTGGCGAATCCTGGTT+GGG | - | chr6_4:85551474-85551493 | Msa1001690:intron | 55.0% | |
| GAATCCTGGTTGGGCAAAGC+TGG | - | chr6_4:85551483-85551502 | Msa1001690:intron | 55.0% | |
| GTGAGCTGCACAACCAGACA+AGG | - | chr6_4:85551509-85551528 | Msa1001690:intron | 55.0% | |
| CTCTGCACCGAAAGGTCACG+TGG | - | chr6_4:85551459-85551478 | Msa1001690:intron | 60.0% | |
| GTCACGTGGCGAATCCTGGT+TGG | - | chr6_4:85551473-85551492 | Msa1001690:intron | 60.0% | |
| CGCGCCAGCTTTGCCCAACC+AGG | + | chr6_4:85551490-85551509 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85547456 | 85554075 | 85547456 | ID=Msa1001690;Name=Msa1001690 |
| chr6_4 | mRNA | 85547456 | 85554075 | 85547456 | ID=Msa1001690-mRNA-1;Parent=Msa1001690;Name=Msa1001690-mRNA-1;_AED=0.20;_eAED=0.20;_QI=53|1|1|1|1|1|3|250|542 |
| chr6_4 | exon | 85547456 | 85547904 | 85547456 | ID=Msa1001690-mRNA-1:exon:16823;Parent=Msa1001690-mRNA-1 |
| chr6_4 | exon | 85551660 | 85551890 | 85551660 | ID=Msa1001690-mRNA-1:exon:16822;Parent=Msa1001690-mRNA-1 |
| chr6_4 | exon | 85552824 | 85554075 | 85552824 | ID=Msa1001690-mRNA-1:exon:16821;Parent=Msa1001690-mRNA-1 |
| chr6_4 | five_prime_UTR | 85554023 | 85554075 | 85554023 | ID=Msa1001690-mRNA-1:five_prime_utr;Parent=Msa1001690-mRNA-1 |
| chr6_4 | CDS | 85552824 | 85554022 | 85552824 | ID=Msa1001690-mRNA-1:cds;Parent=Msa1001690-mRNA-1 |
| chr6_4 | CDS | 85551660 | 85551890 | 85551660 | ID=Msa1001690-mRNA-1:cds;Parent=Msa1001690-mRNA-1 |
| chr6_4 | CDS | 85547706 | 85547904 | 85547706 | ID=Msa1001690-mRNA-1:cds;Parent=Msa1001690-mRNA-1 |
| chr6_4 | three_prime_UTR | 85547456 | 85547705 | 85547456 | ID=Msa1001690-mRNA-1:three_prime_utr;Parent=Msa1001690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
