Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925420 | XP_013453245.1 | 90.364 | 550 | 45 | 2 | 1 | 547 | 1 | 545 | 0.0 | 945 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925420 | sp|Q6H501|HKT6_ORYSJ | 46.111 | 540 | 270 | 8 | 9 | 546 | 10 | 530 | 2.42e-146 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0801610 | Msa0925420 | 0.814435 | 1.543191e-51 | -8.615850e-47 |
| Msa0153890 | Msa0925420 | 0.800044 | 1.733038e-48 | -8.615850e-47 |
| Msa0416470 | Msa0925420 | -0.808435 | 3.102046e-50 | -8.615850e-47 |
| Msa0868410 | Msa0925420 | 0.911529 | 5.485682e-83 | -8.615850e-47 |
| Msa0925420 | Msa1001690 | 0.923541 | 2.319472e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925420 | MtrunA17_Chr6g0488721 | 90.364 | 550 | 45 | 2 | 1 | 547 | 1 | 545 | 0.0 | 945 |
| Msa0925420 | MtrunA17_Chr6g0488681 | 73.429 | 557 | 131 | 5 | 1 | 547 | 1 | 550 | 0.0 | 798 |
| Msa0925420 | MtrunA17_Chr6g0488671 | 71.990 | 382 | 91 | 4 | 16 | 393 | 5 | 374 | 2.11e-179 | 510 |
| Msa0925420 | MtrunA17_Chr6g0488731 | 50.099 | 503 | 224 | 5 | 49 | 546 | 55 | 535 | 2.07e-154 | 452 |
| Msa0925420 | MtrunA17_Chr6g0488711 | 45.278 | 360 | 170 | 5 | 38 | 393 | 30 | 366 | 6.60e-80 | 255 |
| Msa0925420 | MtrunA17_Chr6g0488661 | 79.104 | 67 | 14 | 0 | 480 | 546 | 4 | 70 | 6.18e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925420 | AT4G10310.1 | 44.807 | 491 | 231 | 7 | 66 | 546 | 41 | 501 | 1.11e-131 | 393 |
Find 93 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTTGGTTCTCTGTTTA+TGG | 0.106194 | 6_2:+68496882 | None:intergenic |
| GATTCATGTGATTTAATATT+TGG | 0.111690 | 6_2:+68498349 | None:intergenic |
| GTATTTGTCTATGAAATATT+TGG | 0.172984 | 6_2:-68498299 | Msa0925420:CDS |
| GGATTGGATTTGTTGGAAAA+TGG | 0.247031 | 6_2:-68493509 | Msa0925420:CDS |
| CTCATTCCACAAGTACTTCT+TGG | 0.250746 | 6_2:-68498049 | Msa0925420:CDS |
| ACCACCTATGAACATTAATA+TGG | 0.277554 | 6_2:+68498543 | None:intergenic |
| GAAATCTTTACCTCCATGTT+AGG | 0.285989 | 6_2:-68498520 | Msa0925420:CDS |
| CACATAATGGATTTGCTCTT+AGG | 0.295579 | 6_2:+68498752 | None:intergenic |
| CTCCAAATAGACCTATAAAA+TGG | 0.306144 | 6_2:+68498245 | None:intergenic |
| TATTTGGGTTATATAGTTCT+TGG | 0.306601 | 6_2:-68498283 | Msa0925420:CDS |
| GAAACACACTCTTTATCTTA+TGG | 0.310209 | 6_2:-68497900 | Msa0925420:CDS |
| TATAGAATTTGAACACATAA+TGG | 0.317950 | 6_2:+68498739 | None:intergenic |
| TATTTGTCTATGAAATATTT+GGG | 0.336831 | 6_2:-68498298 | Msa0925420:CDS |
| AACAAATGGATTGGATTTGT+TGG | 0.352409 | 6_2:-68493516 | Msa0925420:CDS |
| TCAGAACGTAGGATTTACTA+TGG | 0.370500 | 6_2:-68493583 | Msa0925420:CDS |
| AAGCATGTCCACGGTTGAAA+TGG | 0.379857 | 6_2:-68498599 | Msa0925420:CDS |
| TTAGGTGTTGTTTGATGTAA+AGG | 0.388596 | 6_2:+68498667 | None:intergenic |
| CGTGTCTTGAATTTATGCTT+TGG | 0.390885 | 6_2:+68497765 | None:intergenic |
| CTTATACTTGTTATGTTGCT+TGG | 0.402643 | 6_2:-68493465 | Msa0925420:CDS |
| TCACACATTAAAATTTCGTT+TGG | 0.403224 | 6_2:+68493273 | None:intergenic |
| GGTTACAAACACTTGTTACA+TGG | 0.403785 | 6_2:-68497923 | Msa0925420:CDS |
| ACAATCAAGATGGAGATCTT+AGG | 0.409146 | 6_2:-68498883 | Msa0925420:exon |
| AATTCAGATTGAAGTTGAAA+TGG | 0.415458 | 6_2:-68498410 | Msa0925420:CDS |
| CTGAATTTGATCAACAATGA+TGG | 0.416216 | 6_2:+68498426 | None:intergenic |
| TTTAATATTTGGCTTTGATA+AGG | 0.417107 | 6_2:+68498360 | None:intergenic |
| ATTACCATATTAATGTTCAT+AGG | 0.419635 | 6_2:-68498547 | Msa0925420:CDS |
| TCATTCCACAAGTACTTCTT+GGG | 0.420368 | 6_2:-68498048 | Msa0925420:CDS |
| CGAGTGCTATATGCTAATAA+AGG | 0.425458 | 6_2:-68493216 | Msa0925420:three_prime_UTR |
| AGGCAAATTGTGAAAACAAA+TGG | 0.428571 | 6_2:-68493530 | Msa0925420:CDS |
| ATATTGCTGTTGAAGTTGTC+AGG | 0.430083 | 6_2:-68496542 | Msa0925420:intron |
| AATTGTGAAAACAAATGGAT+TGG | 0.439853 | 6_2:-68493525 | Msa0925420:CDS |
| CTCACTGCTTTCTGACAATC+CGG | 0.446157 | 6_2:+68496707 | None:intergenic |
| TGAATTTGATCAACAATGAT+GGG | 0.452048 | 6_2:+68498427 | None:intergenic |
| GTAGCACAAGTGAAAATTTG+AGG | 0.459197 | 6_2:-68498321 | Msa0925420:CDS |
| CTTACACCTCATTCCTCCCT+TGG | 0.459685 | 6_2:-68496740 | Msa0925420:CDS |
| AAATCTTTACCTCCATGTTA+GGG | 0.460275 | 6_2:-68498519 | Msa0925420:CDS |
| GTTTCAACATTTGCAAGTTG+TGG | 0.462060 | 6_2:-68498133 | Msa0925420:CDS |
| CTCCCTTGGAAAGACGGATC+CGG | 0.464536 | 6_2:-68496726 | Msa0925420:CDS |
| TGGAATTCAGAAGGTTTGAA+AGG | 0.480618 | 6_2:-68497824 | Msa0925420:CDS |
| AATTATATCACAAGCAATCA+TGG | 0.481660 | 6_2:-68497717 | Msa0925420:intron |
| TGAAACTGTGGTGGCTGAAA+CGG | 0.481952 | 6_2:+68498621 | None:intergenic |
| TTGAACAATGTAGAGGAGGT+TGG | 0.493563 | 6_2:-68497944 | Msa0925420:CDS |
| ATGAATCATAGAAGTTTCCA+TGG | 0.495627 | 6_2:+68493408 | None:intergenic |
| TGGTAATGATGATTAATTGA+GGG | 0.499693 | 6_2:+68498563 | None:intergenic |
| GGAATTCAGAAGGTTTGAAA+GGG | 0.512872 | 6_2:-68497823 | Msa0925420:CDS |
| ATTGCTACATTGCATGGAAG+TGG | 0.514767 | 6_2:+68493240 | None:intergenic |
| TTTATAAGAAGAAAGAGTGT+AGG | 0.516889 | 6_2:-68497973 | Msa0925420:CDS |
| GTTACAAACACTTGTTACAT+GGG | 0.518560 | 6_2:-68497922 | Msa0925420:CDS |
| CTTTGGTTCTCTGTTTATGG+AGG | 0.522723 | 6_2:+68496885 | None:intergenic |
| GATTCTCTTAGGAGCGTCAA+TGG | 0.525492 | 6_2:-68496909 | Msa0925420:intron |
| AATCCGGATCCGTCTTTCCA+AGG | 0.531162 | 6_2:+68496723 | None:intergenic |
| TTTAGTACTTGTTTAGCACT+AGG | 0.532880 | 6_2:+68498199 | None:intergenic |
| CAAGGGAGGAATGAGGTGTA+AGG | 0.535818 | 6_2:+68496741 | None:intergenic |
| AATATTAGAAACAATCAAGA+TGG | 0.536765 | 6_2:-68498893 | Msa0925420:exon |
| TACAAAATCTCAAGCATGGA+GGG | 0.537636 | 6_2:+68498014 | None:intergenic |
| TCATTCCTCCCTTGGAAAGA+CGG | 0.539809 | 6_2:-68496732 | Msa0925420:CDS |
| TTGAAGACATTGAAATTGAG+AGG | 0.543741 | 6_2:+68496564 | None:intergenic |
| AACTGAGAGGAAACAATTGA+AGG | 0.543924 | 6_2:-68496592 | Msa0925420:CDS |
| ACAGAGATGCAGATAATCCA+TGG | 0.550388 | 6_2:-68493425 | Msa0925420:CDS |
| CTAATGGATTGGAATTCAGA+AGG | 0.552605 | 6_2:-68497833 | Msa0925420:CDS |
| TATTCCAACAAATGAAAACA+TGG | 0.552785 | 6_2:-68498107 | Msa0925420:CDS |
| ATAATGGATTTGCTCTTAGG+AGG | 0.556646 | 6_2:+68498755 | None:intergenic |
| ATGGTAATGATGATTAATTG+AGG | 0.556657 | 6_2:+68498562 | None:intergenic |
| GGAATGAGGTGTAAGGTGGA+AGG | 0.557623 | 6_2:+68496748 | None:intergenic |
| CACAGTTTCAAGCATGTCCA+CGG | 0.566687 | 6_2:-68498608 | Msa0925420:CDS |
| TGTGAAATCGAAGCTGATGT+TGG | 0.569645 | 6_2:+68493370 | None:intergenic |
| CATATACAAAATCTCAAGCA+TGG | 0.570855 | 6_2:+68498010 | None:intergenic |
| TTGATAAGGAAGTTATGTGA+AGG | 0.575813 | 6_2:+68498374 | None:intergenic |
| ATCCGGATCCGTCTTTCCAA+GGG | 0.578745 | 6_2:+68496724 | None:intergenic |
| ACTCGAATTGCTACATTGCA+TGG | 0.580840 | 6_2:+68493234 | None:intergenic |
| GTTGGAAAATGGAGTGATGA+GGG | 0.582784 | 6_2:-68493498 | Msa0925420:CDS |
| GAATTTGATCAACAATGATG+GGG | 0.595346 | 6_2:+68498428 | None:intergenic |
| AGCATAAATTCAAGACACGC+TGG | 0.597785 | 6_2:-68497761 | Msa0925420:CDS |
| AATGAAATAAAGCCCTAACA+TGG | 0.597904 | 6_2:+68498507 | None:intergenic |
| TGTTGGAAAATGGAGTGATG+AGG | 0.598002 | 6_2:-68493499 | Msa0925420:CDS |
| GTGTTCCCAAGAAGTACTTG+TGG | 0.605805 | 6_2:+68498043 | None:intergenic |
| TTTGACATGAAGTGTTACAA+AGG | 0.607602 | 6_2:+68498836 | None:intergenic |
| ACCATATTAATGTTCATAGG+TGG | 0.608285 | 6_2:-68498544 | Msa0925420:CDS |
| TAGCACTAGGAATCATTGCA+AGG | 0.608330 | 6_2:+68498212 | None:intergenic |
| GGGAGGAATGAGGTGTAAGG+TGG | 0.611974 | 6_2:+68496744 | None:intergenic |
| GTCTTTCCAAGGGAGGAATG+AGG | 0.630306 | 6_2:+68496734 | None:intergenic |
| CAGAACGTAGGATTTACTAT+GGG | 0.630658 | 6_2:-68493582 | Msa0925420:CDS |
| CGGATCCGTCTTTCCAAGGG+AGG | 0.634629 | 6_2:+68496727 | None:intergenic |
| GATTGTCAGAAAGCAGTGAG+AGG | 0.639761 | 6_2:-68496704 | Msa0925420:CDS |
| CGTGGACATGCTTGAAACTG+TGG | 0.640517 | 6_2:+68498609 | None:intergenic |
| GGACATGCTTGAAACTGTGG+TGG | 0.641655 | 6_2:+68498612 | None:intergenic |
| ACACGCTGGAGAAACTATTG+TGG | 0.648012 | 6_2:-68497747 | Msa0925420:CDS |
| TACTAGTTTGCATAACTGAG+AGG | 0.669787 | 6_2:-68496605 | Msa0925420:CDS |
| TGAACGACAGTTGCATCCAG+AGG | 0.684181 | 6_2:-68493550 | Msa0925420:CDS |
| ATACAAAATCTCAAGCATGG+AGG | 0.690104 | 6_2:+68498013 | None:intergenic |
| GAAATAAAGCCCTAACATGG+AGG | 0.692954 | 6_2:+68498510 | None:intergenic |
| TTGCTTGTGATATAATTGAG+AGG | 0.702634 | 6_2:+68497723 | None:intergenic |
| GACAGTGCATATCAGAACGT+AGG | 0.730512 | 6_2:-68493594 | Msa0925420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTATTTTTATTATT+AGG | - | chr6_2:68494453-68494472 | Msa0925420:intron | 0.0% |
| !! | AATTATTATCAAAAATTGAT+TGG | - | chr6_2:68494286-68494305 | Msa0925420:intron | 10.0% |
| !!! | ATTTTAATGTAAAAAATATG+TGG | + | chr6_2:68494581-68494600 | None:intergenic | 10.0% |
| !! | AAGATTTAATAAAAAAATTG+AGG | - | chr6_2:68494641-68494660 | Msa0925420:intron | 10.0% |
| !! | AGATTTAATAAAAAAATTGA+GGG | - | chr6_2:68494642-68494661 | Msa0925420:intron | 10.0% |
| !!! | ATTAAAAAAAATCTCTTTTT+TGG | - | chr6_2:68495602-68495621 | Msa0925420:intron | 10.0% |
| !!! | TTAAAAAAAATCTCTTTTTT+GGG | - | chr6_2:68495603-68495622 | Msa0925420:intron | 10.0% |
| !!! | ATTTTAATCATATTTTGTTA+TGG | + | chr6_2:68496189-68496208 | None:intergenic | 10.0% |
| !! | CTAATTCATTAAAAATAATA+AGG | - | chr6_2:68496568-68496587 | Msa0925420:CDS | 10.0% |
| !!! | TTTTATCGTAAATAATATTT+CGG | + | chr6_2:68497835-68497854 | None:intergenic | 10.0% |
| !!! | AAAGTTATTAAAAAAGTATT+TGG | - | chr6_2:68498917-68498936 | Msa0925420:five_prime_UTR | 10.0% |
| !! | TATTTGTCTATGAAATATTT+GGG | - | chr6_2:68493785-68493804 | Msa0925420:intron | 15.0% |
| !!! | ATTATAATTCTCCATTTTAT+AGG | - | chr6_2:68493827-68493846 | Msa0925420:intron | 15.0% |
| !! | TATTAAAAAATTACAATCCA+AGG | - | chr6_2:68494687-68494706 | Msa0925420:intron | 15.0% |
| !! | TATAACATTTGCAATATTAA+TGG | - | chr6_2:68494933-68494952 | Msa0925420:intron | 15.0% |
| !! | ATAACATTTGCAATATTAAT+GGG | - | chr6_2:68494934-68494953 | Msa0925420:intron | 15.0% |
| !!! | AAATTATTTAGGTTTTACTT+TGG | + | chr6_2:68495218-68495237 | None:intergenic | 15.0% |
| !!! | AAAGAGATTTTTTTTAATGT+TGG | + | chr6_2:68495600-68495619 | None:intergenic | 15.0% |
| !! | TCAATAATATATTATCAACT+AGG | - | chr6_2:68495836-68495855 | Msa0925420:intron | 15.0% |
| !!! | TTTTTGTTTATCATAATGAT+CGG | + | chr6_2:68495938-68495957 | None:intergenic | 15.0% |
| !! | ACTAACTTCTTATAATAATT+TGG | - | chr6_2:68497038-68497057 | Msa0925420:intron | 15.0% |
| !! | AAAAAATTGTCATTAATACA+TGG | - | chr6_2:68497636-68497655 | Msa0925420:intron | 15.0% |
| !!! | TGTATACCTTTAATTTAATT+AGG | - | chr6_2:68497934-68497953 | Msa0925420:CDS | 15.0% |
| !! | CATATGTATCTTTATAATAT+AGG | - | chr6_2:68497989-68498008 | Msa0925420:CDS | 15.0% |
| !! | TAAACTAAAAAAAACCAATA+TGG | + | chr6_2:68498054-68498073 | None:intergenic | 15.0% |
| !!! | TGGTTTTTTTTAGTTTAAAT+TGG | - | chr6_2:68498057-68498076 | Msa0925420:CDS | 15.0% |
| !!! | ATTTGTTTTAAATTAAGACT+GGG | + | chr6_2:68498249-68498268 | None:intergenic | 15.0% |
| !!! | AATTTGTTTTAAATTAAGAC+TGG | + | chr6_2:68498250-68498269 | None:intergenic | 15.0% |
| !!! | AGTCTTAATTTAAAACAAAT+TGG | - | chr6_2:68498249-68498268 | Msa0925420:CDS | 15.0% |
| !!! | ATACATACATTTTAACATTA+AGG | + | chr6_2:68498398-68498417 | None:intergenic | 15.0% |
| !! | TCAACAATAAAAATTTAGTA+TGG | - | chr6_2:68498892-68498911 | Msa0925420:exon | 15.0% |
| !! | AATATTAGAAACAATCAAGA+TGG | - | chr6_2:68493190-68493209 | Msa0925420:three_prime_UTR | 20.0% |
| !! | TGCTAAGAAAAAAAATGATT+TGG | + | chr6_2:68493288-68493307 | None:intergenic | 20.0% |
| !! | TATAGAATTTGAACACATAA+TGG | + | chr6_2:68493347-68493366 | None:intergenic | 20.0% |
| !!! | AAGAACAAATCTAAGTTTTT+AGG | + | chr6_2:68493437-68493456 | None:intergenic | 20.0% |
| !! | ATTACCATATTAATGTTCAT+AGG | - | chr6_2:68493536-68493555 | Msa0925420:CDS | 20.0% |
| !!! | TTTAATATTTGGCTTTGATA+AGG | + | chr6_2:68493726-68493745 | None:intergenic | 20.0% |
| !! | GATTCATGTGATTTAATATT+TGG | + | chr6_2:68493737-68493756 | None:intergenic | 20.0% |
| !! | GTATTTGTCTATGAAATATT+TGG | - | chr6_2:68493784-68493803 | Msa0925420:intron | 20.0% |
| !! | TAAACAAGTACTAAAAAACA+AGG | - | chr6_2:68493892-68493911 | Msa0925420:intron | 20.0% |
| !! | AAACAAGTACTAAAAAACAA+GGG | - | chr6_2:68493893-68493912 | Msa0925420:intron | 20.0% |
| !! | TATAGTAAAAATTGAGAAAG+TGG | + | chr6_2:68493930-68493949 | None:intergenic | 20.0% |
| !! | ATGTAAAAAATATGTGGATA+TGG | + | chr6_2:68494575-68494594 | None:intergenic | 20.0% |
| !!! | AAAAATGACTAGTTAAACTA+AGG | + | chr6_2:68494795-68494814 | None:intergenic | 20.0% |
| !!! | TAGTTTAACTAGTCATTTTT+AGG | - | chr6_2:68494795-68494814 | Msa0925420:intron | 20.0% |
| !! | TCAAATGTAGAGAATTATAT+GGG | + | chr6_2:68494745-68494764 | None:intergenic | 20.0% |
| !! | TTACTTTATCTAGGTTTAAT+TGG | - | chr6_2:68495007-68495026 | Msa0925420:intron | 20.0% |
| !! | AGTATAGAAAAATCCAATAT+AGG | + | chr6_2:68495060-68495079 | None:intergenic | 20.0% |
| !! | TTTGGTCATCTAAATTATTT+AGG | + | chr6_2:68495229-68495248 | None:intergenic | 20.0% |
| !! | AGTAAACAGTATTATATACT+AGG | + | chr6_2:68495263-68495282 | None:intergenic | 20.0% |
| !! | TGTGAATTAGTAGAAAAATA+TGG | - | chr6_2:68495798-68495817 | Msa0925420:intron | 20.0% |
| !! | TAGATATTCATAGGAATATA+CGG | - | chr6_2:68495999-68496018 | Msa0925420:intron | 20.0% |
| !!! | ATATTTTGTTATGGTGTAAA+TGG | + | chr6_2:68496180-68496199 | None:intergenic | 20.0% |
| !! | AAATATGATTAAAATCAGCA+TGG | - | chr6_2:68496194-68496213 | Msa0925420:intron | 20.0% |
| !!! | TGTTGTTTTTACTTTTTACA+CGG | - | chr6_2:68496412-68496431 | Msa0925420:intron | 20.0% |
| !!! | AATAGAGCATTAAAAACAAA+AGG | - | chr6_2:68496696-68496715 | Msa0925420:CDS | 20.0% |
| !! | ACAAAAATATCATTCACTAA+TGG | - | chr6_2:68497184-68497203 | Msa0925420:intron | 20.0% |
| !!! | CAGAATTATATGTCATTTTA+CGG | + | chr6_2:68497299-68497318 | None:intergenic | 20.0% |
| !! | AAAATACAAGAGAGAAAATA+TGG | + | chr6_2:68497432-68497451 | None:intergenic | 20.0% |
| !! | AATTATTATACCAGAGATAA+AGG | - | chr6_2:68497502-68497521 | Msa0925420:intron | 20.0% |
| !! | AAGTAACATTGATATTTCAT+TGG | - | chr6_2:68497726-68497745 | Msa0925420:CDS | 20.0% |
| !! | TTGTAAAACGACTTATAATT+TGG | - | chr6_2:68497751-68497770 | Msa0925420:CDS | 20.0% |
| !!! | TTTTATTACACTAAATGAGT+CGG | + | chr6_2:68497886-68497905 | None:intergenic | 20.0% |
| !! | TGAACACCTAATTAAATTAA+AGG | + | chr6_2:68497943-68497962 | None:intergenic | 20.0% |
| !!! | TACATATGAGTTAGTTTTAA+GGG | + | chr6_2:68497977-68497996 | None:intergenic | 20.0% |
| !!! | ATACATATGAGTTAGTTTTA+AGG | + | chr6_2:68497978-68497997 | None:intergenic | 20.0% |
| !!! | TTTTAAGACAATTTGTACAT+TGG | + | chr6_2:68498787-68498806 | None:intergenic | 20.0% |
| !!! | TTCATCTCTATTTCCTTTTT+TGG | - | chr6_2:68493368-68493387 | Msa0925420:three_prime_UTR | 25.0% |
| !!! | TCATCTCTATTTCCTTTTTT+GGG | - | chr6_2:68493369-68493388 | Msa0925420:three_prime_UTR | 25.0% |
| !! | TGGTAATGATGATTAATTGA+GGG | + | chr6_2:68493523-68493542 | None:intergenic | 25.0% |
| !! | ATGGTAATGATGATTAATTG+AGG | + | chr6_2:68493524-68493543 | None:intergenic | 25.0% |
| ! | TGAATTTGATCAACAATGAT+GGG | + | chr6_2:68493659-68493678 | None:intergenic | 25.0% |
| ! | AATTCAGATTGAAGTTGAAA+TGG | - | chr6_2:68493673-68493692 | Msa0925420:intron | 25.0% |
| !! | TATTTGGGTTATATAGTTCT+TGG | - | chr6_2:68493800-68493819 | Msa0925420:intron | 25.0% |
| ! | TATTCCAACAAATGAAAACA+TGG | - | chr6_2:68493976-68493995 | Msa0925420:intron | 25.0% |
| !!! | GTTGTTTTTAGAAAGAATTC+AGG | - | chr6_2:68493998-68494017 | Msa0925420:intron | 25.0% |
| !! | ATGCTTGAGATTTTGTATAT+GGG | - | chr6_2:68494075-68494094 | Msa0925420:intron | 25.0% |
| !! | AGATTTTGTATATGGGTATT+AGG | - | chr6_2:68494082-68494101 | Msa0925420:intron | 25.0% |
| !! | GATTTTGTATATGGGTATTA+GGG | - | chr6_2:68494083-68494102 | Msa0925420:intron | 25.0% |
| !! | TTTATAAGAAGAAAGAGTGT+AGG | - | chr6_2:68494110-68494129 | Msa0925420:intron | 25.0% |
| !!! | AGTTACTTTGTTTTGTCTAA+TGG | - | chr6_2:68494234-68494253 | Msa0925420:intron | 25.0% |
| ! | AATTATATCACAAGCAATCA+TGG | - | chr6_2:68494366-68494385 | Msa0925420:intron | 25.0% |
| !!! | TATTATTAGGCCATTTTGAA+TGG | - | chr6_2:68494466-68494485 | Msa0925420:intron | 25.0% |
| !!! | ATTATTAGGCCATTTTGAAT+GGG | - | chr6_2:68494467-68494486 | Msa0925420:intron | 25.0% |
| !!! | TTATTAGAGTGTTGTACATT+TGG | + | chr6_2:68494532-68494551 | None:intergenic | 25.0% |
| !!! | CTACATTTGAGTATTTTAGT+GGG | + | chr6_2:68494735-68494754 | None:intergenic | 25.0% |
| !!! | TCTACATTTGAGTATTTTAG+TGG | + | chr6_2:68494736-68494755 | None:intergenic | 25.0% |
| ! | CAAATGTAGAGAATTATATG+TGG | - | chr6_2:68494746-68494765 | Msa0925420:intron | 25.0% |
| ! | ATGTGAAATATTGCACAAAT+TGG | + | chr6_2:68494854-68494873 | None:intergenic | 25.0% |
| ! | CTCAAATGTAGAGAATTATA+TGG | + | chr6_2:68494744-68494763 | None:intergenic | 25.0% |
| !!! | CAATATTAATGGGTTTATAC+AGG | - | chr6_2:68494944-68494963 | Msa0925420:intron | 25.0% |
| ! | AACTTGAATGTGCAATATAT+GGG | + | chr6_2:68494989-68495008 | None:intergenic | 25.0% |
| ! | TAACTTGAATGTGCAATATA+TGG | + | chr6_2:68494990-68495009 | None:intergenic | 25.0% |
| !! | ACATTCAAGTTACTTTATCT+AGG | - | chr6_2:68494998-68495017 | Msa0925420:intron | 25.0% |
| ! | AATGTAAACCATACCTATAT+TGG | - | chr6_2:68495044-68495063 | Msa0925420:intron | 25.0% |
| ! | AGAAAAATCCAATATAGGTA+TGG | + | chr6_2:68495055-68495074 | None:intergenic | 25.0% |
| !!! | TATTTTTTGTGGATTCTCTT+AGG | - | chr6_2:68495163-68495182 | Msa0925420:intron | 25.0% |
| !!! | TACTAGGCTAAGTTTTATTT+TGG | + | chr6_2:68495247-68495266 | None:intergenic | 25.0% |
| ! | TTTAATGTTGGAATTAGAGA+GGG | + | chr6_2:68495588-68495607 | None:intergenic | 25.0% |
| !! | TTTTAATGTTGGAATTAGAG+AGG | + | chr6_2:68495589-68495608 | None:intergenic | 25.0% |
| ! | TCCACATAATAGATATTCAT+AGG | - | chr6_2:68495990-68496009 | Msa0925420:intron | 25.0% |
| ! | TCCTATGAATATCTATTATG+TGG | + | chr6_2:68495994-68496013 | None:intergenic | 25.0% |
| ! | ATTAACCTGAATTTAAACTC+AGG | + | chr6_2:68496081-68496100 | None:intergenic | 25.0% |
| !!! | ACTAATCATTCGAGTTTTAT+AGG | + | chr6_2:68496134-68496153 | None:intergenic | 25.0% |
| ! | TAAATGACAATACACAAAGT+GGG | + | chr6_2:68496327-68496346 | None:intergenic | 25.0% |
| ! | ATAAATGACAATACACAAAG+TGG | + | chr6_2:68496328-68496347 | None:intergenic | 25.0% |
| !!! | ACACGGTAATTTTTTTATAG+TGG | - | chr6_2:68496429-68496448 | Msa0925420:intron | 25.0% |
| ! | AACAATGCATAAAATATGCA+AGG | + | chr6_2:68496474-68496493 | None:intergenic | 25.0% |
| ! | CGGTAATTATCATAATTGAA+AGG | - | chr6_2:68496531-68496550 | Msa0925420:intron | 25.0% |
| !! | TGTATTTTACTGATATCCTT+TGG | - | chr6_2:68496623-68496642 | Msa0925420:CDS | 25.0% |
| !!! | TATTAACGCTTTTTCTTGTA+AGG | - | chr6_2:68497008-68497027 | Msa0925420:intron | 25.0% |
| !! | ATATATAATTTAGAACTGCG+AGG | + | chr6_2:68497091-68497110 | None:intergenic | 25.0% |
| ! | AATATCATTCACTAATGGTA+TGG | - | chr6_2:68497189-68497208 | Msa0925420:intron | 25.0% |
| !! | AATGAAAAGTGTAGATTACA+TGG | - | chr6_2:68497474-68497493 | Msa0925420:intron | 25.0% |
| ! | GCATATATATTATGATCCAA+AGG | + | chr6_2:68498114-68498133 | None:intergenic | 25.0% |
| !!! | AAGCGTTGAAAAAATGTTTA+TGG | + | chr6_2:68498373-68498392 | None:intergenic | 25.0% |
| !! | ATGCGTTAGTGTTATATTTT+CGG | + | chr6_2:68498460-68498479 | None:intergenic | 25.0% |
| ! | AATTGTGAAAACAAATGGAT+TGG | - | chr6_2:68498558-68498577 | Msa0925420:CDS | 25.0% |
| ! | TCACACATTAAAATTTCGTT+TGG | + | chr6_2:68498813-68498832 | None:intergenic | 25.0% |
| ! | TTTGACATGAAGTGTTACAA+AGG | + | chr6_2:68493250-68493269 | None:intergenic | 30.0% |
| !! | TCTTAGCAGCATGTTTTTAT+CGG | - | chr6_2:68493300-68493319 | Msa0925420:three_prime_UTR | 30.0% |
| !!! | TCTATTTCCTTTTTTGGGTT+TGG | - | chr6_2:68493374-68493393 | Msa0925420:three_prime_UTR | 30.0% |
| !! | TTAGGTGTTGTTTGATGTAA+AGG | + | chr6_2:68493419-68493438 | None:intergenic | 30.0% |
| AAAAATTTCCATTTCAACCG+TGG | + | chr6_2:68493495-68493514 | None:intergenic | 30.0% | |
| ACCATATTAATGTTCATAGG+TGG | - | chr6_2:68493539-68493558 | Msa0925420:CDS | 30.0% | |
| ACCACCTATGAACATTAATA+TGG | + | chr6_2:68493543-68493562 | None:intergenic | 30.0% | |
| AAATCTTTACCTCCATGTTA+GGG | - | chr6_2:68493564-68493583 | Msa0925420:CDS | 30.0% | |
| AATGAAATAAAGCCCTAACA+TGG | + | chr6_2:68493579-68493598 | None:intergenic | 30.0% | |
| GAATTTGATCAACAATGATG+GGG | + | chr6_2:68493658-68493677 | None:intergenic | 30.0% | |
| CTGAATTTGATCAACAATGA+TGG | + | chr6_2:68493660-68493679 | None:intergenic | 30.0% | |
| TTGATAAGGAAGTTATGTGA+AGG | + | chr6_2:68493712-68493731 | None:intergenic | 30.0% | |
| ! | CTCCATTTTATAGGTCTATT+TGG | - | chr6_2:68493836-68493855 | Msa0925420:intron | 30.0% |
| CTCCAAATAGACCTATAAAA+TGG | + | chr6_2:68493841-68493860 | None:intergenic | 30.0% | |
| TTTAGTACTTGTTTAGCACT+AGG | + | chr6_2:68493887-68493906 | None:intergenic | 30.0% | |
| ! | ACAACCATGTTTTCATTTGT+TGG | + | chr6_2:68493983-68494002 | None:intergenic | 30.0% |
| CATATACAAAATCTCAAGCA+TGG | + | chr6_2:68494076-68494095 | None:intergenic | 30.0% | |
| ! | CATGCTTGAGATTTTGTATA+TGG | - | chr6_2:68494074-68494093 | Msa0925420:intron | 30.0% |
| ! | GTATCTTTTGAACAATGTAG+AGG | - | chr6_2:68494132-68494151 | Msa0925420:intron | 30.0% |
| ! | GTTACAAACACTTGTTACAT+GGG | - | chr6_2:68494161-68494180 | Msa0925420:intron | 30.0% |
| GAAACACACTCTTTATCTTA+TGG | - | chr6_2:68494183-68494202 | Msa0925420:intron | 30.0% | |
| ! | TATCTTATGGCTACTGTTTT+TGG | - | chr6_2:68494196-68494215 | Msa0925420:intron | 30.0% |
| !! | ATCTTATGGCTACTGTTTTT+GGG | - | chr6_2:68494197-68494216 | Msa0925420:intron | 30.0% |
| !!! | CTTTGTTTTGTCTAATGGAT+TGG | - | chr6_2:68494239-68494258 | Msa0925420:intron | 30.0% |
| TTGCTTGTGATATAATTGAG+AGG | + | chr6_2:68494363-68494382 | None:intergenic | 30.0% | |
| TTAGGTATTCCCATTCAAAA+TGG | + | chr6_2:68494479-68494498 | None:intergenic | 30.0% | |
| TTCAACACACTTATTGTGTT+AGG | + | chr6_2:68494497-68494516 | None:intergenic | 30.0% | |
| ACACAATAAGTGTGTTGAAT+AGG | - | chr6_2:68494498-68494517 | Msa0925420:intron | 30.0% | |
| AATAAGTGTGTTGAATAGGT+AGG | - | chr6_2:68494502-68494521 | Msa0925420:intron | 30.0% | |
| ATGGGTTTATACAGGTTTAA+TGG | - | chr6_2:68494952-68494971 | Msa0925420:intron | 30.0% | |
| TGGGTTTATACAGGTTTAAT+GGG | - | chr6_2:68494953-68494972 | Msa0925420:intron | 30.0% | |
| !! | TTACTTTGGTTCTCTGTTTA+TGG | + | chr6_2:68495204-68495223 | None:intergenic | 30.0% |
| ! | ACCATCATGATAATTTGTAC+AGG | - | chr6_2:68495310-68495329 | Msa0925420:intron | 30.0% |
| ACCTGTACAAATTATCATGA+TGG | + | chr6_2:68495314-68495333 | None:intergenic | 30.0% | |
| AAAGAGAGGAGAAAAAGTAA+CGG | - | chr6_2:68495410-68495429 | Msa0925420:intron | 30.0% | |
| TTGAAGACATTGAAATTGAG+AGG | + | chr6_2:68495522-68495541 | None:intergenic | 30.0% | |
| TATACGGCTATTAAAAAGTG+CGG | - | chr6_2:68496015-68496034 | Msa0925420:intron | 30.0% | |
| CTTAACCTGAGTTTAAATTC+AGG | - | chr6_2:68496073-68496092 | Msa0925420:intron | 30.0% | |
| TTATCCTTCTAAACAAAACC+AGG | + | chr6_2:68496379-68496398 | None:intergenic | 30.0% | |
| !!! | TAATTTTTTTATAGTGGCCG+AGG | - | chr6_2:68496435-68496454 | Msa0925420:intron | 30.0% |
| ! | ATTTTACTGATATCCTTTGG+TGG | - | chr6_2:68496626-68496645 | Msa0925420:CDS | 30.0% |
| ! | AGAAAACTTTTATCCACCAA+AGG | + | chr6_2:68496642-68496661 | None:intergenic | 30.0% |
| AGATCTCATGAAGAATATGT+TGG | - | chr6_2:68496735-68496754 | Msa0925420:CDS | 30.0% | |
| CAACAACGAAAATTGATTGA+TGG | - | chr6_2:68496943-68496962 | Msa0925420:intron | 30.0% | |
| ! | TTTAGGTTTACCTTTATCTC+TGG | + | chr6_2:68497515-68497534 | None:intergenic | 30.0% |
| !!! | AACGAAGGAAGTACTTTTTT+AGG | + | chr6_2:68497532-68497551 | None:intergenic | 30.0% |
| ! | TTCCAAATTATACGACGTTT+TGG | - | chr6_2:68497550-68497569 | Msa0925420:intron | 30.0% |
| ! | TCCAAATTATACGACGTTTT+GGG | - | chr6_2:68497551-68497570 | Msa0925420:intron | 30.0% |
| GATGGAGATAGATTAAAAGT+TGG | - | chr6_2:68497808-68497827 | Msa0925420:CDS | 30.0% | |
| AAAGAACCTCGAGATATATT+TGG | + | chr6_2:68498015-68498034 | None:intergenic | 30.0% | |
| GTTTAACGTTTGTACCATAT+TGG | - | chr6_2:68498037-68498056 | Msa0925420:CDS | 30.0% | |
| ATATTATGATCCAAAGGACT+AGG | + | chr6_2:68498108-68498127 | None:intergenic | 30.0% | |
| ! | CTTAATTAAAAGCGTGTATG+TGG | - | chr6_2:68498157-68498176 | Msa0925420:CDS | 30.0% |
| AGGCAAATTGTGAAAACAAA+TGG | - | chr6_2:68498553-68498572 | Msa0925420:CDS | 30.0% | |
| !! | AACAAATGGATTGGATTTGT+TGG | - | chr6_2:68498567-68498586 | Msa0925420:CDS | 30.0% |
| !! | CTTATACTTGTTATGTTGCT+TGG | - | chr6_2:68498618-68498637 | Msa0925420:CDS | 30.0% |
| ATGAATCATAGAAGTTTCCA+TGG | + | chr6_2:68498678-68498697 | None:intergenic | 30.0% | |
| ACAATCAAGATGGAGATCTT+AGG | - | chr6_2:68493200-68493219 | Msa0925420:three_prime_UTR | 35.0% | |
| !! | ATAATGGATTTGCTCTTAGG+AGG | + | chr6_2:68493331-68493350 | None:intergenic | 35.0% |
| !! | CACATAATGGATTTGCTCTT+AGG | + | chr6_2:68493334-68493353 | None:intergenic | 35.0% |
| GAGAAATCCAAACCCAAAAA+AGG | + | chr6_2:68493384-68493403 | None:intergenic | 35.0% | |
| GAAATCTTTACCTCCATGTT+AGG | - | chr6_2:68493563-68493582 | Msa0925420:CDS | 35.0% | |
| GTAGCACAAGTGAAAATTTG+AGG | - | chr6_2:68493762-68493781 | Msa0925420:intron | 35.0% | |
| GTTTCAACATTTGCAAGTTG+TGG | - | chr6_2:68493950-68493969 | Msa0925420:intron | 35.0% | |
| TCATTCCACAAGTACTTCTT+GGG | - | chr6_2:68494035-68494054 | Msa0925420:intron | 35.0% | |
| TACAAAATCTCAAGCATGGA+GGG | + | chr6_2:68494072-68494091 | None:intergenic | 35.0% | |
| ATACAAAATCTCAAGCATGG+AGG | + | chr6_2:68494073-68494092 | None:intergenic | 35.0% | |
| ! | TCTTTTGAACAATGTAGAGG+AGG | - | chr6_2:68494135-68494154 | Msa0925420:intron | 35.0% |
| ! | GGTTACAAACACTTGTTACA+TGG | - | chr6_2:68494160-68494179 | Msa0925420:intron | 35.0% |
| !! | CTAATGGATTGGAATTCAGA+AGG | - | chr6_2:68494250-68494269 | Msa0925420:intron | 35.0% |
| TGGAATTCAGAAGGTTTGAA+AGG | - | chr6_2:68494259-68494278 | Msa0925420:intron | 35.0% | |
| GGAATTCAGAAGGTTTGAAA+GGG | - | chr6_2:68494260-68494279 | Msa0925420:intron | 35.0% | |
| CGTGTCTTGAATTTATGCTT+TGG | + | chr6_2:68494321-68494340 | None:intergenic | 35.0% | |
| TGAGAGAAACTAACATCATG+AGG | + | chr6_2:68494402-68494421 | None:intergenic | 35.0% | |
| ! | TACTAGTTTGCATAACTGAG+AGG | - | chr6_2:68495478-68495497 | Msa0925420:intron | 35.0% |
| AACTGAGAGGAAACAATTGA+AGG | - | chr6_2:68495491-68495510 | Msa0925420:intron | 35.0% | |
| ! | ATATTGCTGTTGAAGTTGTC+AGG | - | chr6_2:68495541-68495560 | Msa0925420:intron | 35.0% |
| CTAGGTTATCTATTGAGGAA+CGG | + | chr6_2:68495642-68495661 | None:intergenic | 35.0% | |
| GTCAACTAGGTTATCTATTG+AGG | + | chr6_2:68495647-68495666 | None:intergenic | 35.0% | |
| ! | ATACGGCTATTAAAAAGTGC+GGG | - | chr6_2:68496016-68496035 | Msa0925420:intron | 35.0% |
| !!! | TAATCCTAGCTGTCTTGTTT+TGG | + | chr6_2:68496289-68496308 | None:intergenic | 35.0% |
| !! | GCTACATGGATTAGAATGTA+TGG | + | chr6_2:68496357-68496376 | None:intergenic | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | + | chr6_2:68496469-68496488 | None:intergenic | 35.0% | |
| GATCATTGAGATTACTCTCT+TGG | + | chr6_2:68496602-68496621 | None:intergenic | 35.0% | |
| AAGATTATCTTGCTAGCTAC+TGG | - | chr6_2:68496860-68496879 | Msa0925420:intron | 35.0% | |
| !!! | CGCTTTTTCTTGTAAGGAAA+CGG | - | chr6_2:68497014-68497033 | Msa0925420:intron | 35.0% |
| !!! | GAGCGATTTTTAATTTGCGA+TGG | - | chr6_2:68497790-68497809 | Msa0925420:CDS | 35.0% |
| TATAGGCCAAATATATCTCG+AGG | - | chr6_2:68498006-68498025 | Msa0925420:CDS | 35.0% | |
| GTGGATGTCTATTTCAAAGT+TGG | - | chr6_2:68498176-68498195 | Msa0925420:CDS | 35.0% | |
| ATTCATCGCTCTTGAAACTA+AGG | - | chr6_2:68498208-68498227 | Msa0925420:CDS | 35.0% | |
| TCAGAACGTAGGATTTACTA+TGG | - | chr6_2:68498500-68498519 | Msa0925420:CDS | 35.0% | |
| CAGAACGTAGGATTTACTAT+GGG | - | chr6_2:68498501-68498520 | Msa0925420:CDS | 35.0% | |
| ! | TTGTTTTCACAATTTGCCTC+TGG | + | chr6_2:68498552-68498571 | None:intergenic | 35.0% |
| !! | GGATTGGATTTGTTGGAAAA+TGG | - | chr6_2:68498574-68498593 | Msa0925420:CDS | 35.0% |
| CGAGTGCTATATGCTAATAA+AGG | - | chr6_2:68498867-68498886 | Msa0925420:CDS | 35.0% | |
| GAAATAAAGCCCTAACATGG+AGG | + | chr6_2:68493576-68493595 | None:intergenic | 40.0% | |
| TAGCACTAGGAATCATTGCA+AGG | + | chr6_2:68493874-68493893 | None:intergenic | 40.0% | |
| CTCATTCCACAAGTACTTCT+TGG | - | chr6_2:68494034-68494053 | Msa0925420:intron | 40.0% | |
| TTGAACAATGTAGAGGAGGT+TGG | - | chr6_2:68494139-68494158 | Msa0925420:intron | 40.0% | |
| AGCATAAATTCAAGACACGC+TGG | - | chr6_2:68494322-68494341 | Msa0925420:intron | 40.0% | |
| !! | CTTTGGTTCTCTGTTTATGG+AGG | + | chr6_2:68495201-68495220 | None:intergenic | 40.0% |
| TACATGTGTCAGAGTCAACT+AGG | + | chr6_2:68495660-68495679 | None:intergenic | 40.0% | |
| CTAGGTCATCTATTGAGTGA+CGG | - | chr6_2:68495854-68495873 | Msa0925420:intron | 40.0% | |
| TGCGTGTACGATATTCATCT+TGG | - | chr6_2:68496244-68496263 | Msa0925420:intron | 40.0% | |
| TCAACCAAAACAAGACAGCT+AGG | - | chr6_2:68496282-68496301 | Msa0925420:intron | 40.0% | |
| ACATTCTAATCCATGTAGCC+TGG | - | chr6_2:68496358-68496377 | Msa0925420:intron | 40.0% | |
| CTAAACAAAACCAGGCTACA+TGG | + | chr6_2:68496371-68496390 | None:intergenic | 40.0% | |
| !!! | GTAGCCTGGTTTTGTTTAGA+AGG | - | chr6_2:68496372-68496391 | Msa0925420:intron | 40.0% |
| CATAAAATATGCAAGGTCCG+GGG | + | chr6_2:68496467-68496486 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | + | chr6_2:68496468-68496487 | None:intergenic | 40.0% | |
| GTGAGTTTAACTCAACTGGT+TGG | + | chr6_2:68496497-68496516 | None:intergenic | 40.0% | |
| ! | ACTCACGAGGACTTTTTACA+CGG | - | chr6_2:68496511-68496530 | Msa0925420:intron | 40.0% |
| ! | CGTCGTATAATTTGGAACGA+AGG | + | chr6_2:68497547-68497566 | None:intergenic | 40.0% |
| GCCCAAAACGTCGTATAATT+TGG | + | chr6_2:68497555-68497574 | None:intergenic | 40.0% | |
| TGACGTAAATCGAACGATGT+AGG | - | chr6_2:68497860-68497879 | Msa0925420:CDS | 40.0% | |
| TGTTGGAAAATGGAGTGATG+AGG | - | chr6_2:68498584-68498603 | Msa0925420:CDS | 40.0% | |
| GTTGGAAAATGGAGTGATGA+GGG | - | chr6_2:68498585-68498604 | Msa0925420:CDS | 40.0% | |
| ACAGAGATGCAGATAATCCA+TGG | - | chr6_2:68498658-68498677 | Msa0925420:CDS | 40.0% | |
| TGTGAAATCGAAGCTGATGT+TGG | + | chr6_2:68498716-68498735 | None:intergenic | 40.0% | |
| ATTGCTACATTGCATGGAAG+TGG | + | chr6_2:68498846-68498865 | None:intergenic | 40.0% | |
| ACTCGAATTGCTACATTGCA+TGG | + | chr6_2:68498852-68498871 | None:intergenic | 40.0% | |
| TGAAACTGTGGTGGCTGAAA+CGG | + | chr6_2:68493465-68493484 | None:intergenic | 45.0% | |
| CACAGTTTCAAGCATGTCCA+CGG | - | chr6_2:68493475-68493494 | Msa0925420:CDS | 45.0% | |
| AAGCATGTCCACGGTTGAAA+TGG | - | chr6_2:68493484-68493503 | Msa0925420:CDS | 45.0% | |
| !! | GTGTTCCCAAGAAGTACTTG+TGG | + | chr6_2:68494043-68494062 | None:intergenic | 45.0% |
| ACACGCTGGAGAAACTATTG+TGG | - | chr6_2:68494336-68494355 | Msa0925420:intron | 45.0% | |
| CTCACACAAGTGCATATCCT+TGG | + | chr6_2:68494707-68494726 | None:intergenic | 45.0% | |
| !! | GATTCTCTTAGGAGCGTCAA+TGG | - | chr6_2:68495174-68495193 | Msa0925420:intron | 45.0% |
| TCATTCCTCCCTTGGAAAGA+CGG | - | chr6_2:68495351-68495370 | Msa0925420:intron | 45.0% | |
| CTCACTGCTTTCTGACAATC+CGG | + | chr6_2:68495379-68495398 | None:intergenic | 45.0% | |
| GATTGTCAGAAAGCAGTGAG+AGG | - | chr6_2:68495379-68495398 | Msa0925420:intron | 45.0% | |
| GAGAGGATGCAGAAAAAGAG+AGG | - | chr6_2:68495396-68495415 | Msa0925420:intron | 45.0% | |
| GGTTATCTATTGAGGAACGG+AGG | + | chr6_2:68495639-68495658 | None:intergenic | 45.0% | |
| ! | GTCATCTATTGAGTGACGGA+GGG | - | chr6_2:68495858-68495877 | Msa0925420:intron | 45.0% |
| CCTCGTGAGTTTAACTCAAC+TGG | + | chr6_2:68496501-68496520 | None:intergenic | 45.0% | |
| CCAGTTGAGTTAAACTCACG+AGG | - | chr6_2:68496498-68496517 | Msa0925420:intron | 45.0% | |
| GACAGTGCATATCAGAACGT+AGG | - | chr6_2:68498489-68498508 | Msa0925420:CDS | 45.0% | |
| !! | ATAATAATAATAATAATTAG+TGG | + | chr6_2:68494443-68494462 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTATTTTTTG+TGG | - | chr6_2:68495152-68495171 | Msa0925420:intron | 5.0% |
| !! | AAAAAAAATTATGAAAAATA+TGG | - | chr6_2:68495722-68495741 | Msa0925420:intron | 5.0% |
| !! | TAAATAATTAATTGTATAAT+AGG | - | chr6_2:68497701-68497720 | Msa0925420:intron | 5.0% |
| GGACATGCTTGAAACTGTGG+TGG | + | chr6_2:68493474-68493493 | None:intergenic | 50.0% | |
| CGTGGACATGCTTGAAACTG+TGG | + | chr6_2:68493477-68493496 | None:intergenic | 50.0% | |
| GGAATGAGGTGTAAGGTGGA+AGG | + | chr6_2:68495338-68495357 | None:intergenic | 50.0% | |
| CAAGGGAGGAATGAGGTGTA+AGG | + | chr6_2:68495345-68495364 | None:intergenic | 50.0% | |
| CTTACACCTCATTCCTCCCT+TGG | - | chr6_2:68495343-68495362 | Msa0925420:intron | 50.0% | |
| GTCTTTCCAAGGGAGGAATG+AGG | + | chr6_2:68495352-68495371 | None:intergenic | 50.0% | |
| ATCCGGATCCGTCTTTCCAA+GGG | + | chr6_2:68495362-68495381 | None:intergenic | 50.0% | |
| AATCCGGATCCGTCTTTCCA+AGG | + | chr6_2:68495363-68495382 | None:intergenic | 50.0% | |
| GGTCATCTATTGAGTGACGG+AGG | - | chr6_2:68495857-68495876 | Msa0925420:intron | 50.0% | |
| CAAGTGTGCACCTAGTCCTT+TGG | - | chr6_2:68498095-68498114 | Msa0925420:CDS | 50.0% | |
| TGAACGACAGTTGCATCCAG+AGG | - | chr6_2:68498533-68498552 | Msa0925420:CDS | 50.0% | |
| GGGAGGAATGAGGTGTAAGG+TGG | + | chr6_2:68495342-68495361 | None:intergenic | 55.0% | |
| CTCCCTTGGAAAGACGGATC+CGG | - | chr6_2:68495357-68495376 | Msa0925420:intron | 55.0% | |
| AAGGTCCGGGGTTCAAACCT+CGG | + | chr6_2:68496455-68496474 | None:intergenic | 55.0% | |
| CGGATCCGTCTTTCCAAGGG+AGG | + | chr6_2:68495359-68495378 | None:intergenic | 60.0% | |
| AGTGGCCGAGGTTTGAACCC+CGG | - | chr6_2:68496447-68496466 | Msa0925420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 68493156 | 68498949 | 68493156 | ID=Msa0925420;Name=Msa0925420 |
| chr6_2 | mRNA | 68493156 | 68498949 | 68493156 | ID=Msa0925420-mRNA-1;Parent=Msa0925420;Name=Msa0925420-mRNA-1;_AED=0.30;_eAED=0.30;_QI=53|0.33|0.75|1|1|1|4|257|547 |
| chr6_2 | exon | 68493156 | 68493611 | 68493156 | ID=Msa0925420-mRNA-1:exon:10947;Parent=Msa0925420-mRNA-1 |
| chr6_2 | exon | 68496543 | 68496773 | 68496543 | ID=Msa0925420-mRNA-1:exon:10946;Parent=Msa0925420-mRNA-1 |
| chr6_2 | exon | 68496886 | 68496920 | 68496886 | ID=Msa0925420-mRNA-1:exon:10945;Parent=Msa0925420-mRNA-1 |
| chr6_2 | exon | 68497718 | 68498949 | 68497718 | ID=Msa0925420-mRNA-1:exon:10944;Parent=Msa0925420-mRNA-1 |
| chr6_2 | five_prime_UTR | 68498897 | 68498949 | 68498897 | ID=Msa0925420-mRNA-1:five_prime_utr;Parent=Msa0925420-mRNA-1 |
| chr6_2 | CDS | 68497718 | 68498896 | 68497718 | ID=Msa0925420-mRNA-1:cds;Parent=Msa0925420-mRNA-1 |
| chr6_2 | CDS | 68496886 | 68496920 | 68496886 | ID=Msa0925420-mRNA-1:cds;Parent=Msa0925420-mRNA-1 |
| chr6_2 | CDS | 68496543 | 68496773 | 68496543 | ID=Msa0925420-mRNA-1:cds;Parent=Msa0925420-mRNA-1 |
| chr6_2 | CDS | 68493413 | 68493611 | 68493413 | ID=Msa0925420-mRNA-1:cds;Parent=Msa0925420-mRNA-1 |
| chr6_2 | three_prime_UTR | 68493156 | 68493412 | 68493156 | ID=Msa0925420-mRNA-1:three_prime_utr;Parent=Msa0925420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
