AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003630 MtrunA17_Chr4g0001531 100.000 57 0 0 35 91 1 57 7.91e-39 123
Msa1003630 MtrunA17_Chr7g0214441 100.000 57 0 0 35 91 1 57 7.91e-39 123
Msa1003630 MtrunA17_Chr4g0024331 38.095 84 44 2 12 90 33 113 1.01e-16 69.3
Msa1003630 MtrunA17_Chr2g0322741 36.905 84 45 2 12 90 34 114 5.39e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003630 AT3G05870.4 93.976 83 5 0 8 90 7 89 8.03e-55 165
Msa1003630 AT3G05870.3 93.976 83 5 0 8 90 7 89 8.03e-55 165
Msa1003630 AT3G05870.5 93.976 83 5 0 8 90 7 89 8.03e-55 165
Msa1003630 AT3G05870.1 100.000 76 0 0 15 90 11 86 6.67e-54 162
Msa1003630 AT3G05870.2 100.000 76 0 0 15 90 11 86 6.67e-54 162
Msa1003630 AT3G05870.6 100.000 76 0 0 15 90 11 86 6.67e-54 162
Msa1003630 AT3G05870.7 98.701 77 1 0 14 90 1 77 1.86e-53 161
Msa1003630 AT5G20570.1 38.095 84 44 2 12 90 34 114 2.09e-16 68.9
Msa1003630 AT3G42830.1 38.095 84 44 2 12 90 31 111 4.19e-15 65.5
Msa1003630 AT5G26640.1 84.375 32 5 0 22 53 5 36 2.01e-14 62.4
Msa1003630 AT5G20570.3 30.392 102 45 3 12 90 34 132 1.03e-11 57.0
Msa1003630 AT5G20570.2 29.630 108 44 3 12 90 34 138 9.20e-11 54.7

Find 32 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGTTGCTTCTTGGACT+TGG 0.254508 7_1:-724556 Msa1003630:CDS
TGTAATTTGATCATTTCTAT+TGG 0.277487 7_1:-722696 Msa1003630:three_prime_UTR
TGAAATTAGAGTTTCTAAAT+TGG 0.278981 7_1:-722616 Msa1003630:three_prime_UTR
GATGGCATGCTGTTGCTTCT+TGG 0.281016 7_1:-724562 Msa1003630:CDS
CGTCGGGAATGGCAATTTAA+AGG 0.290239 7_1:-722812 Msa1003630:CDS
TGCTGTTGCTTCTTGGACTT+GGG 0.306486 7_1:-724555 Msa1003630:CDS
ATTTACATTGTATCTTGAAA+TGG 0.311304 7_1:-722874 Msa1003630:CDS
TGTCCTGATTGTAAACTTCC+TGG 0.394301 7_1:-724482 Msa1003630:CDS
TCTCTCTATTGGATTTCTGC+TGG 0.398400 7_1:-724778 Msa1003630:CDS
TTTACATTGTATCTTGAAAT+GGG 0.412787 7_1:-722873 Msa1003630:CDS
TAATATCTCCATTGTTTCCA+TGG 0.415568 7_1:-722642 Msa1003630:three_prime_UTR
TTCTTGGACTTGGGATGCAC+AGG 0.429937 7_1:-724546 Msa1003630:CDS
ATCTGTAGGATGGCCTTTGA+TGG 0.438695 7_1:-724509 Msa1003630:CDS
GCCATTCCCGACGACACATT+GGG 0.449214 7_1:+722822 None:intergenic
GTCCTGATTGTAAACTTCCT+GGG 0.462403 7_1:-724481 Msa1003630:CDS
AAACTCTAATTTCAATCCCA+TGG 0.474150 7_1:+722625 None:intergenic
TGCCATTCCCGACGACACAT+TGG 0.494237 7_1:+722821 None:intergenic
GCCCAATGTGTCGTCGGGAA+TGG 0.498823 7_1:-722823 Msa1003630:CDS
AATATCTCCATTGTTTCCAT+GGG 0.512610 7_1:-722641 Msa1003630:three_prime_UTR
CACATTGCCCAATGTGTCGT+CGG 0.513658 7_1:-722829 Msa1003630:CDS
TCCCCAGGAAGTTTACAATC+AGG 0.518100 7_1:+724479 None:intergenic
CATTGGGCAATGTGCTTGTG+AGG 0.523053 7_1:+722838 None:intergenic
TTTCAATCCCATGGAAACAA+TGG 0.523838 7_1:+722634 None:intergenic
GGATGTATTGCTTATGAATG+AGG 0.540581 7_1:-722675 Msa1003630:three_prime_UTR
ACATTGCCCAATGTGTCGTC+GGG 0.540781 7_1:-722828 Msa1003630:CDS
TCCTGATTGTAAACTTCCTG+GGG 0.574605 7_1:-724480 Msa1003630:CDS
ATGAAACATGTGGGATCTGT+AGG 0.577911 7_1:-724523 Msa1003630:CDS
CTGAGTGGACAGTCATCCCC+AGG 0.578584 7_1:+724464 None:intergenic
ATCAGGACAGCATCCATCAA+AGG 0.590910 7_1:+724496 None:intergenic
AACATGTGGGATCTGTAGGA+TGG 0.695036 7_1:-724519 Msa1003630:CDS
GATGCACAGGATGAAACATG+TGG 0.715539 7_1:-724533 Msa1003630:CDS
ATGCACAGGATGAAACATGT+GGG 0.727822 7_1:-724532 Msa1003630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTCAATAAAATAAACAA+TGG + chr7_1:723370-723389 None:intergenic 15.0%
!! TTATCTAAATGTTAAAACAA+AGG + chr7_1:723396-723415 None:intergenic 15.0%
!! AATATATTATTTGATATGTC+AGG + chr7_1:724457-724476 None:intergenic 15.0%
!! TCATTCAATAAAATAAACAA+TGG + chr7_1:723370-723389 None:intergenic 15.0%
!! TTATCTAAATGTTAAAACAA+AGG + chr7_1:723396-723415 None:intergenic 15.0%
!! AATATATTATTTGATATGTC+AGG + chr7_1:724457-724476 None:intergenic 15.0%
!! ACAACTAATGAATACATATT+AGG + chr7_1:722801-722820 None:intergenic 20.0%
!! AAAAATAGTAAACTCTCATT+TGG - chr7_1:723254-723273 Msa1003630:intron 20.0%
!! AGAAGAATCAACATAAATTT+CGG + chr7_1:723760-723779 None:intergenic 20.0%
!! TACATTCAGTAAAATTAGAA+AGG + chr7_1:724109-724128 None:intergenic 20.0%
!! ATTTACATTGTATCTTGAAA+TGG - chr7_1:724553-724572 Msa1003630:CDS 20.0%
!! TTTACATTGTATCTTGAAAT+GGG - chr7_1:724554-724573 Msa1003630:CDS 20.0%
!!! CAATGTAATTTTGTTTTTCA+TGG - chr7_1:724654-724673 Msa1003630:intron 20.0%
!!! AAGTAACTAAGATCTTTTTA+AGG - chr7_1:724704-724723 Msa1003630:intron 20.0%
!!! AGTAACTAAGATCTTTTTAA+GGG - chr7_1:724705-724724 Msa1003630:intron 20.0%
!! TGTAATTTGATCATTTCTAT+TGG - chr7_1:724731-724750 Msa1003630:intron 20.0%
!! TGAAATTAGAGTTTCTAAAT+TGG - chr7_1:724811-724830 Msa1003630:intron 20.0%
!!! ATATATTTTTTCATCCTTTG+TGG + chr7_1:724853-724872 None:intergenic 20.0%
!! ACAACTAATGAATACATATT+AGG + chr7_1:722801-722820 None:intergenic 20.0%
!! AAAAATAGTAAACTCTCATT+TGG - chr7_1:723254-723273 Msa1003630:intron 20.0%
!! AGAAGAATCAACATAAATTT+CGG + chr7_1:723760-723779 None:intergenic 20.0%
!! TACATTCAGTAAAATTAGAA+AGG + chr7_1:724109-724128 None:intergenic 20.0%
!! ATTTACATTGTATCTTGAAA+TGG - chr7_1:724553-724572 Msa1003630:CDS 20.0%
!! TTTACATTGTATCTTGAAAT+GGG - chr7_1:724554-724573 Msa1003630:CDS 20.0%
!!! CAATGTAATTTTGTTTTTCA+TGG - chr7_1:724654-724673 Msa1003630:intron 20.0%
!!! AAGTAACTAAGATCTTTTTA+AGG - chr7_1:724704-724723 Msa1003630:intron 20.0%
!!! AGTAACTAAGATCTTTTTAA+GGG - chr7_1:724705-724724 Msa1003630:intron 20.0%
!! TGTAATTTGATCATTTCTAT+TGG - chr7_1:724731-724750 Msa1003630:intron 20.0%
!! TGAAATTAGAGTTTCTAAAT+TGG - chr7_1:724811-724830 Msa1003630:intron 20.0%
!!! ATATATTTTTTCATCCTTTG+TGG + chr7_1:724853-724872 None:intergenic 20.0%
! TTCTCTAACTAACTTTATAC+AGG - chr7_1:722703-722722 Msa1003630:three_prime_UTR 25.0%
! TCAGTAAGTTACATTATCTT+GGG - chr7_1:722982-723001 Msa1003630:intron 25.0%
! TATTTGCATACAATTGTCTT+TGG - chr7_1:723025-723044 Msa1003630:intron 25.0%
! GTCATTGAAATATGTTGAAA+TGG - chr7_1:723179-723198 Msa1003630:intron 25.0%
! AATGGAATTTAACAACACTT+CGG + chr7_1:723352-723371 None:intergenic 25.0%
! TCATGGTAACATATATATCA+CGG + chr7_1:723455-723474 None:intergenic 25.0%
! ACTAATTTCATCAATATTCC+AGG - chr7_1:723608-723627 Msa1003630:intron 25.0%
! AACATTCTTCTTAACAGAAT+AGG - chr7_1:723711-723730 Msa1003630:intron 25.0%
! AATGGATGAGATACTTTAAA+GGG + chr7_1:723810-723829 None:intergenic 25.0%
! AAATGGATGAGATACTTTAA+AGG + chr7_1:723811-723830 None:intergenic 25.0%
!!! TAAAGTATCTCATCCATTTT+TGG - chr7_1:723812-723831 Msa1003630:intron 25.0%
! TTTACCACGTCATTAATATA+TGG - chr7_1:723892-723911 Msa1003630:intron 25.0%
! TTACCACGTCATTAATATAT+GGG - chr7_1:723893-723912 Msa1003630:intron 25.0%
! ATACCTATAAACAACATTTG+TGG - chr7_1:724140-724159 Msa1003630:intron 25.0%
!! AAACCACAAATGTTGTTTAT+AGG + chr7_1:724146-724165 None:intergenic 25.0%
!! TTTATAAAGCTTTATGCTCA+AGG - chr7_1:724237-724256 Msa1003630:intron 25.0%
!!! CATGATTGAGAATTTTTCAA+GGG - chr7_1:724278-724297 Msa1003630:intron 25.0%
!!! TTTGTTTTTCATGGAAAACT+AGG - chr7_1:724663-724682 Msa1003630:intron 25.0%
!!! TTGTTTTTCATGGAAAACTA+GGG - chr7_1:724664-724683 Msa1003630:intron 25.0%
! TTCTCTAACTAACTTTATAC+AGG - chr7_1:722703-722722 Msa1003630:three_prime_UTR 25.0%
! TCAGTAAGTTACATTATCTT+GGG - chr7_1:722982-723001 Msa1003630:intron 25.0%
! TATTTGCATACAATTGTCTT+TGG - chr7_1:723025-723044 Msa1003630:intron 25.0%
! GTCATTGAAATATGTTGAAA+TGG - chr7_1:723179-723198 Msa1003630:intron 25.0%
! AATGGAATTTAACAACACTT+CGG + chr7_1:723352-723371 None:intergenic 25.0%
! TCATGGTAACATATATATCA+CGG + chr7_1:723455-723474 None:intergenic 25.0%
! ACTAATTTCATCAATATTCC+AGG - chr7_1:723608-723627 Msa1003630:intron 25.0%
! AACATTCTTCTTAACAGAAT+AGG - chr7_1:723711-723730 Msa1003630:intron 25.0%
! AATGGATGAGATACTTTAAA+GGG + chr7_1:723810-723829 None:intergenic 25.0%
! AAATGGATGAGATACTTTAA+AGG + chr7_1:723811-723830 None:intergenic 25.0%
!!! TAAAGTATCTCATCCATTTT+TGG - chr7_1:723812-723831 Msa1003630:intron 25.0%
! TTTACCACGTCATTAATATA+TGG - chr7_1:723892-723911 Msa1003630:intron 25.0%
! TTACCACGTCATTAATATAT+GGG - chr7_1:723893-723912 Msa1003630:intron 25.0%
! ATACCTATAAACAACATTTG+TGG - chr7_1:724140-724159 Msa1003630:intron 25.0%
!! AAACCACAAATGTTGTTTAT+AGG + chr7_1:724146-724165 None:intergenic 25.0%
!! TTTATAAAGCTTTATGCTCA+AGG - chr7_1:724237-724256 Msa1003630:intron 25.0%
!!! CATGATTGAGAATTTTTCAA+GGG - chr7_1:724278-724297 Msa1003630:intron 25.0%
!!! TTTGTTTTTCATGGAAAACT+AGG - chr7_1:724663-724682 Msa1003630:intron 25.0%
!!! TTGTTTTTCATGGAAAACTA+GGG - chr7_1:724664-724683 Msa1003630:intron 25.0%
GGTTGAATGCAAAAATGAAA+AGG + chr7_1:722585-722604 None:intergenic 30.0%
!! TGACTTAGTTTTCTCTCTAT+TGG - chr7_1:722638-722657 Msa1003630:three_prime_UTR 30.0%
CTAACTTTATACAGGTTGTT+TGG - chr7_1:722711-722730 Msa1003630:three_prime_UTR 30.0%
!! CATATTAGGTTGATTTCACT+AGG + chr7_1:722787-722806 None:intergenic 30.0%
CTTATCTCATCAAATGTAGA+TGG - chr7_1:722847-722866 Msa1003630:CDS 30.0%
AGATAATGTAACTTACTGAG+TGG + chr7_1:722981-723000 None:intergenic 30.0%
CTCAGTAAGTTACATTATCT+TGG - chr7_1:722981-723000 Msa1003630:intron 30.0%
ATTTCACAATTCAGCACAAT+AGG + chr7_1:723159-723178 None:intergenic 30.0%
! CAAAATAGACTTTTATGACG+TGG - chr7_1:723231-723250 Msa1003630:intron 30.0%
TAGTAAACTCTCATTTGGAT+TGG - chr7_1:723259-723278 Msa1003630:intron 30.0%
ATGGAATTTAACAACACTTC+GGG + chr7_1:723351-723370 None:intergenic 30.0%
AACATATATATCACGGTAGT+TGG + chr7_1:723448-723467 None:intergenic 30.0%
ACAATTGCATGATAGTTTCA+TGG + chr7_1:723472-723491 None:intergenic 30.0%
AAATAGATGCTGTAAAAAGC+AGG - chr7_1:723523-723542 Msa1003630:intron 30.0%
AATAGATGCTGTAAAAAGCA+GGG - chr7_1:723524-723543 Msa1003630:intron 30.0%
! GTACTTATTGGTTATGTTGT+AGG + chr7_1:723668-723687 None:intergenic 30.0%
GAACAAAATTAGGCCAAAAA+TGG + chr7_1:723828-723847 None:intergenic 30.0%
AAACCCATATATTAATGACG+TGG + chr7_1:723899-723918 None:intergenic 30.0%
!!! GATTTTTAGTTGAAACCAGT+TGG + chr7_1:723962-723981 None:intergenic 30.0%
! AATGTTGTTTATAGGTATCC+AGG + chr7_1:724138-724157 None:intergenic 30.0%
! GCATGATTGAGAATTTTTCA+AGG - chr7_1:724277-724296 Msa1003630:intron 30.0%
TAATATCTCCATTGTTTCCA+TGG - chr7_1:724785-724804 Msa1003630:intron 30.0%
AATATCTCCATTGTTTCCAT+GGG - chr7_1:724786-724805 Msa1003630:intron 30.0%
AAACTCTAATTTCAATCCCA+TGG + chr7_1:724805-724824 None:intergenic 30.0%
GGTTGAATGCAAAAATGAAA+AGG + chr7_1:722585-722604 None:intergenic 30.0%
!! TGACTTAGTTTTCTCTCTAT+TGG - chr7_1:722638-722657 Msa1003630:three_prime_UTR 30.0%
CTAACTTTATACAGGTTGTT+TGG - chr7_1:722711-722730 Msa1003630:three_prime_UTR 30.0%
!! CATATTAGGTTGATTTCACT+AGG + chr7_1:722787-722806 None:intergenic 30.0%
CTTATCTCATCAAATGTAGA+TGG - chr7_1:722847-722866 Msa1003630:CDS 30.0%
AGATAATGTAACTTACTGAG+TGG + chr7_1:722981-723000 None:intergenic 30.0%
CTCAGTAAGTTACATTATCT+TGG - chr7_1:722981-723000 Msa1003630:intron 30.0%
ATTTCACAATTCAGCACAAT+AGG + chr7_1:723159-723178 None:intergenic 30.0%
! CAAAATAGACTTTTATGACG+TGG - chr7_1:723231-723250 Msa1003630:intron 30.0%
TAGTAAACTCTCATTTGGAT+TGG - chr7_1:723259-723278 Msa1003630:intron 30.0%
ATGGAATTTAACAACACTTC+GGG + chr7_1:723351-723370 None:intergenic 30.0%
AACATATATATCACGGTAGT+TGG + chr7_1:723448-723467 None:intergenic 30.0%
ACAATTGCATGATAGTTTCA+TGG + chr7_1:723472-723491 None:intergenic 30.0%
AAATAGATGCTGTAAAAAGC+AGG - chr7_1:723523-723542 Msa1003630:intron 30.0%
AATAGATGCTGTAAAAAGCA+GGG - chr7_1:723524-723543 Msa1003630:intron 30.0%
! GTACTTATTGGTTATGTTGT+AGG + chr7_1:723668-723687 None:intergenic 30.0%
GAACAAAATTAGGCCAAAAA+TGG + chr7_1:723828-723847 None:intergenic 30.0%
AAACCCATATATTAATGACG+TGG + chr7_1:723899-723918 None:intergenic 30.0%
!!! GATTTTTAGTTGAAACCAGT+TGG + chr7_1:723962-723981 None:intergenic 30.0%
! AATGTTGTTTATAGGTATCC+AGG + chr7_1:724138-724157 None:intergenic 30.0%
! GCATGATTGAGAATTTTTCA+AGG - chr7_1:724277-724296 Msa1003630:intron 30.0%
TAATATCTCCATTGTTTCCA+TGG - chr7_1:724785-724804 Msa1003630:intron 30.0%
AATATCTCCATTGTTTCCAT+GGG - chr7_1:724786-724805 Msa1003630:intron 30.0%
AAACTCTAATTTCAATCCCA+TGG + chr7_1:724805-724824 None:intergenic 30.0%
! TTTGAAGCAAAAGCACAAAC+AGG + chr7_1:722606-722625 None:intergenic 35.0%
ATTCAGCACAATAGGAAAGT+GGG + chr7_1:723151-723170 None:intergenic 35.0%
AATTCAGCACAATAGGAAAG+TGG + chr7_1:723152-723171 None:intergenic 35.0%
ATAGATGCTGTAAAAAGCAG+GGG - chr7_1:723525-723544 Msa1003630:intron 35.0%
CCACAAGATTGTGTACTTAT+TGG + chr7_1:723680-723699 None:intergenic 35.0%
CCAATAAGTACACAATCTTG+TGG - chr7_1:723677-723696 Msa1003630:intron 35.0%
!! CTTCTCTAAGATGACTATGT+TGG - chr7_1:723775-723794 Msa1003630:intron 35.0%
GAGTCAAGAGGAACAAAATT+AGG + chr7_1:723838-723857 None:intergenic 35.0%
TTTCTCACATAAGAGTCAAG+AGG + chr7_1:723850-723869 None:intergenic 35.0%
! CTGATTGCATGATAGTGTAA+TGG + chr7_1:723939-723958 None:intergenic 35.0%
AGCTCAAAAGGCAATAAAAG+GGG + chr7_1:724055-724074 None:intergenic 35.0%
GAGCTCAAAAGGCAATAAAA+GGG + chr7_1:724056-724075 None:intergenic 35.0%
AGAGCTCAAAAGGCAATAAA+AGG + chr7_1:724057-724076 None:intergenic 35.0%
TTACTGAATGTAGATAAGCC+TGG - chr7_1:724117-724136 Msa1003630:intron 35.0%
TGTGTTATCACTGACATTCA+TGG - chr7_1:724208-724227 Msa1003630:intron 35.0%
GTGTTATCACTGACATTCAT+GGG - chr7_1:724209-724228 Msa1003630:intron 35.0%
! ATGTATTGATGCAATGTTCC+GGG + chr7_1:724387-724406 None:intergenic 35.0%
! GATGTATTGATGCAATGTTC+CGG + chr7_1:724388-724407 None:intergenic 35.0%
GGATGTATTGCTTATGAATG+AGG - chr7_1:724752-724771 Msa1003630:intron 35.0%
TTTCAATCCCATGGAAACAA+TGG + chr7_1:724796-724815 None:intergenic 35.0%
!! CATGTTTGTTTTCTCCACAA+AGG - chr7_1:724836-724855 Msa1003630:intron 35.0%
! TTTGAAGCAAAAGCACAAAC+AGG + chr7_1:722606-722625 None:intergenic 35.0%
ATTCAGCACAATAGGAAAGT+GGG + chr7_1:723151-723170 None:intergenic 35.0%
AATTCAGCACAATAGGAAAG+TGG + chr7_1:723152-723171 None:intergenic 35.0%
ATAGATGCTGTAAAAAGCAG+GGG - chr7_1:723525-723544 Msa1003630:intron 35.0%
CCACAAGATTGTGTACTTAT+TGG + chr7_1:723680-723699 None:intergenic 35.0%
CCAATAAGTACACAATCTTG+TGG - chr7_1:723677-723696 Msa1003630:intron 35.0%
!! CTTCTCTAAGATGACTATGT+TGG - chr7_1:723775-723794 Msa1003630:intron 35.0%
GAGTCAAGAGGAACAAAATT+AGG + chr7_1:723838-723857 None:intergenic 35.0%
TTTCTCACATAAGAGTCAAG+AGG + chr7_1:723850-723869 None:intergenic 35.0%
! CTGATTGCATGATAGTGTAA+TGG + chr7_1:723939-723958 None:intergenic 35.0%
AGCTCAAAAGGCAATAAAAG+GGG + chr7_1:724055-724074 None:intergenic 35.0%
GAGCTCAAAAGGCAATAAAA+GGG + chr7_1:724056-724075 None:intergenic 35.0%
AGAGCTCAAAAGGCAATAAA+AGG + chr7_1:724057-724076 None:intergenic 35.0%
TTACTGAATGTAGATAAGCC+TGG - chr7_1:724117-724136 Msa1003630:intron 35.0%
TGTGTTATCACTGACATTCA+TGG - chr7_1:724208-724227 Msa1003630:intron 35.0%
GTGTTATCACTGACATTCAT+GGG - chr7_1:724209-724228 Msa1003630:intron 35.0%
! ATGTATTGATGCAATGTTCC+GGG + chr7_1:724387-724406 None:intergenic 35.0%
! GATGTATTGATGCAATGTTC+CGG + chr7_1:724388-724407 None:intergenic 35.0%
GGATGTATTGCTTATGAATG+AGG - chr7_1:724752-724771 Msa1003630:intron 35.0%
TTTCAATCCCATGGAAACAA+TGG + chr7_1:724796-724815 None:intergenic 35.0%
!! CATGTTTGTTTTCTCCACAA+AGG - chr7_1:724836-724855 Msa1003630:intron 35.0%
TCTCTCTATTGGATTTCTGC+TGG - chr7_1:722649-722668 Msa1003630:three_prime_UTR 40.0%
CTTTATACAGGTTGTTTGGC+TGG - chr7_1:722715-722734 Msa1003630:three_prime_UTR 40.0%
ATGCACAGGATGAAACATGT+GGG - chr7_1:722895-722914 Msa1003630:CDS 40.0%
ATGAAACATGTGGGATCTGT+AGG - chr7_1:722904-722923 Msa1003630:CDS 40.0%
TGTCCTGATTGTAAACTTCC+TGG - chr7_1:722945-722964 Msa1003630:intron 40.0%
GTCCTGATTGTAAACTTCCT+GGG - chr7_1:722946-722965 Msa1003630:intron 40.0%
TCCTGATTGTAAACTTCCTG+GGG - chr7_1:722947-722966 Msa1003630:intron 40.0%
CTGAGCTGAAGAAAAGTAGT+AGG - chr7_1:723556-723575 Msa1003630:intron 40.0%
CTGCATGTAAAGAGCTCAAA+AGG + chr7_1:724067-724086 None:intergenic 40.0%
! CTTTTGAGCTCTTTACATGC+AGG - chr7_1:724065-724084 Msa1003630:intron 40.0%
AAAGGAGGAAGACATCAAAG+TGG + chr7_1:724363-724382 None:intergenic 40.0%
! TGTATTGATGCAATGTTCCG+GGG + chr7_1:724386-724405 None:intergenic 40.0%
! AAACTGCACATAGTGGGAAA+AGG + chr7_1:724509-724528 None:intergenic 40.0%
! TTTTCCCACTATGTGCAGTT+TGG - chr7_1:724508-724527 Msa1003630:CDS 40.0%
TTTCCCACTATGTGCAGTTT+GGG - chr7_1:724509-724528 Msa1003630:CDS 40.0%
TCTCTCTATTGGATTTCTGC+TGG - chr7_1:722649-722668 Msa1003630:three_prime_UTR 40.0%
CTTTATACAGGTTGTTTGGC+TGG - chr7_1:722715-722734 Msa1003630:three_prime_UTR 40.0%
ATGCACAGGATGAAACATGT+GGG - chr7_1:722895-722914 Msa1003630:CDS 40.0%
ATGAAACATGTGGGATCTGT+AGG - chr7_1:722904-722923 Msa1003630:CDS 40.0%
TGTCCTGATTGTAAACTTCC+TGG - chr7_1:722945-722964 Msa1003630:intron 40.0%
GTCCTGATTGTAAACTTCCT+GGG - chr7_1:722946-722965 Msa1003630:intron 40.0%
TCCTGATTGTAAACTTCCTG+GGG - chr7_1:722947-722966 Msa1003630:intron 40.0%
CTGAGCTGAAGAAAAGTAGT+AGG - chr7_1:723556-723575 Msa1003630:intron 40.0%
CTGCATGTAAAGAGCTCAAA+AGG + chr7_1:724067-724086 None:intergenic 40.0%
! CTTTTGAGCTCTTTACATGC+AGG - chr7_1:724065-724084 Msa1003630:intron 40.0%
AAAGGAGGAAGACATCAAAG+TGG + chr7_1:724363-724382 None:intergenic 40.0%
! TGTATTGATGCAATGTTCCG+GGG + chr7_1:724386-724405 None:intergenic 40.0%
! AAACTGCACATAGTGGGAAA+AGG + chr7_1:724509-724528 None:intergenic 40.0%
! TTTTCCCACTATGTGCAGTT+TGG - chr7_1:724508-724527 Msa1003630:CDS 40.0%
TTTCCCACTATGTGCAGTTT+GGG - chr7_1:724509-724528 Msa1003630:CDS 40.0%
! ATGCTGTTGCTTCTTGGACT+TGG - chr7_1:722871-722890 Msa1003630:CDS 45.0%
! TGCTGTTGCTTCTTGGACTT+GGG - chr7_1:722872-722891 Msa1003630:CDS 45.0%
GATGCACAGGATGAAACATG+TGG - chr7_1:722894-722913 Msa1003630:CDS 45.0%
AACATGTGGGATCTGTAGGA+TGG - chr7_1:722908-722927 Msa1003630:intron 45.0%
ATCTGTAGGATGGCCTTTGA+TGG - chr7_1:722918-722937 Msa1003630:intron 45.0%
ATCAGGACAGCATCCATCAA+AGG + chr7_1:722934-722953 None:intergenic 45.0%
TCCCCAGGAAGTTTACAATC+AGG + chr7_1:722951-722970 None:intergenic 45.0%
CACTAGTGAGAATGCAGTTG+AGG + chr7_1:723113-723132 None:intergenic 45.0%
CAATAGGAAAGTGGGCAAAC+AGG + chr7_1:723143-723162 None:intergenic 45.0%
TTGACTGAGACGTGGAACAA+AGG + chr7_1:723634-723653 None:intergenic 45.0%
!! ATATCGACTTGACTGAGACG+TGG + chr7_1:723642-723661 None:intergenic 45.0%
CGTCTCAGTCAAGTCGATAT+AGG - chr7_1:723642-723661 Msa1003630:intron 45.0%
CTATCATGCAATCAGCCAAC+TGG - chr7_1:723944-723963 Msa1003630:intron 45.0%
AGGGGAACTCATTGTGTACA+AGG + chr7_1:724037-724056 None:intergenic 45.0%
TTCCCACTATGTGCAGTTTG+GGG - chr7_1:724510-724529 Msa1003630:CDS 45.0%
CGTCGGGAATGGCAATTTAA+AGG - chr7_1:724615-724634 Msa1003630:intron 45.0%
! ATGCTGTTGCTTCTTGGACT+TGG - chr7_1:722871-722890 Msa1003630:CDS 45.0%
! TGCTGTTGCTTCTTGGACTT+GGG - chr7_1:722872-722891 Msa1003630:CDS 45.0%
GATGCACAGGATGAAACATG+TGG - chr7_1:722894-722913 Msa1003630:CDS 45.0%
AACATGTGGGATCTGTAGGA+TGG - chr7_1:722908-722927 Msa1003630:intron 45.0%
ATCTGTAGGATGGCCTTTGA+TGG - chr7_1:722918-722937 Msa1003630:intron 45.0%
ATCAGGACAGCATCCATCAA+AGG + chr7_1:722934-722953 None:intergenic 45.0%
TCCCCAGGAAGTTTACAATC+AGG + chr7_1:722951-722970 None:intergenic 45.0%
CACTAGTGAGAATGCAGTTG+AGG + chr7_1:723113-723132 None:intergenic 45.0%
CAATAGGAAAGTGGGCAAAC+AGG + chr7_1:723143-723162 None:intergenic 45.0%
TTGACTGAGACGTGGAACAA+AGG + chr7_1:723634-723653 None:intergenic 45.0%
!! ATATCGACTTGACTGAGACG+TGG + chr7_1:723642-723661 None:intergenic 45.0%
CGTCTCAGTCAAGTCGATAT+AGG - chr7_1:723642-723661 Msa1003630:intron 45.0%
CTATCATGCAATCAGCCAAC+TGG - chr7_1:723944-723963 Msa1003630:intron 45.0%
AGGGGAACTCATTGTGTACA+AGG + chr7_1:724037-724056 None:intergenic 45.0%
TTCCCACTATGTGCAGTTTG+GGG - chr7_1:724510-724529 Msa1003630:CDS 45.0%
CGTCGGGAATGGCAATTTAA+AGG - chr7_1:724615-724634 Msa1003630:intron 45.0%
TACAGGTTGTTTGGCTGGTG+TGG - chr7_1:722720-722739 Msa1003630:three_prime_UTR 50.0%
TTGTTTGGCTGGTGTGGTTC+TGG - chr7_1:722726-722745 Msa1003630:three_prime_UTR 50.0%
! GATGGCATGCTGTTGCTTCT+TGG - chr7_1:722865-722884 Msa1003630:CDS 50.0%
TTCTTGGACTTGGGATGCAC+AGG - chr7_1:722881-722900 Msa1003630:CDS 50.0%
TGATGTCTTCCTCCTTTCCC+CGG - chr7_1:724366-724385 Msa1003630:intron 50.0%
TGATGCAATGTTCCGGGGAA+AGG + chr7_1:724381-724400 None:intergenic 50.0%
CACCCCAAACTGCACATAGT+GGG + chr7_1:724515-724534 None:intergenic 50.0%
CATTGGGCAATGTGCTTGTG+AGG + chr7_1:724592-724611 None:intergenic 50.0%
CACATTGCCCAATGTGTCGT+CGG - chr7_1:724598-724617 Msa1003630:intron 50.0%
ACATTGCCCAATGTGTCGTC+GGG - chr7_1:724599-724618 Msa1003630:intron 50.0%
TACAGGTTGTTTGGCTGGTG+TGG - chr7_1:722720-722739 Msa1003630:three_prime_UTR 50.0%
TTGTTTGGCTGGTGTGGTTC+TGG - chr7_1:722726-722745 Msa1003630:three_prime_UTR 50.0%
! GATGGCATGCTGTTGCTTCT+TGG - chr7_1:722865-722884 Msa1003630:CDS 50.0%
TTCTTGGACTTGGGATGCAC+AGG - chr7_1:722881-722900 Msa1003630:CDS 50.0%
TGATGTCTTCCTCCTTTCCC+CGG - chr7_1:724366-724385 Msa1003630:intron 50.0%
TGATGCAATGTTCCGGGGAA+AGG + chr7_1:724381-724400 None:intergenic 50.0%
CACCCCAAACTGCACATAGT+GGG + chr7_1:724515-724534 None:intergenic 50.0%
CATTGGGCAATGTGCTTGTG+AGG + chr7_1:724592-724611 None:intergenic 50.0%
CACATTGCCCAATGTGTCGT+CGG - chr7_1:724598-724617 Msa1003630:intron 50.0%
ACATTGCCCAATGTGTCGTC+GGG - chr7_1:724599-724618 Msa1003630:intron 50.0%
TGAGACGTGGAACAAAGGCC+TGG + chr7_1:723629-723648 None:intergenic 55.0%
TGCAATGTTCCGGGGAAAGG+AGG + chr7_1:724378-724397 None:intergenic 55.0%
GCACCCCAAACTGCACATAG+TGG + chr7_1:724516-724535 None:intergenic 55.0%
GCCATTCCCGACGACACATT+GGG + chr7_1:724608-724627 None:intergenic 55.0%
TGCCATTCCCGACGACACAT+TGG + chr7_1:724609-724628 None:intergenic 55.0%
TGAGACGTGGAACAAAGGCC+TGG + chr7_1:723629-723648 None:intergenic 55.0%
TGCAATGTTCCGGGGAAAGG+AGG + chr7_1:724378-724397 None:intergenic 55.0%
GCACCCCAAACTGCACATAG+TGG + chr7_1:724516-724535 None:intergenic 55.0%
GCCATTCCCGACGACACATT+GGG + chr7_1:724608-724627 None:intergenic 55.0%
TGCCATTCCCGACGACACAT+TGG + chr7_1:724609-724628 None:intergenic 55.0%
CTGAGTGGACAGTCATCCCC+AGG + chr7_1:722966-722985 None:intergenic 60.0%
GCCCAATGTGTCGTCGGGAA+TGG - chr7_1:724604-724623 Msa1003630:intron 60.0%
CTGAGTGGACAGTCATCCCC+AGG + chr7_1:722966-722985 None:intergenic 60.0%
GCCCAATGTGTCGTCGGGAA+TGG - chr7_1:724604-724623 Msa1003630:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 722559 724890 722559 ID=Msa1003630;Name=Msa1003630
chr7_1 mRNA 722559 724890 722559 ID=Msa1003630-mRNA-1;Parent=Msa1003630;Name=Msa1003630-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.66|0.5|1|0.33|0.5|4|249|91
chr7_1 exon 722559 722923 722559 ID=Msa1003630-mRNA-1:exon:258;Parent=Msa1003630-mRNA-1
chr7_1 exon 724465 724583 724465 ID=Msa1003630-mRNA-1:exon:257;Parent=Msa1003630-mRNA-1
chr7_1 exon 724769 724803 724769 ID=Msa1003630-mRNA-1:exon:256;Parent=Msa1003630-mRNA-1
chr7_1 exon 724885 724890 724885 ID=Msa1003630-mRNA-1:exon:255;Parent=Msa1003630-mRNA-1
chr7_1 CDS 724885 724890 724885 ID=Msa1003630-mRNA-1:cds;Parent=Msa1003630-mRNA-1
chr7_1 CDS 724769 724803 724769 ID=Msa1003630-mRNA-1:cds;Parent=Msa1003630-mRNA-1
chr7_1 CDS 724465 724583 724465 ID=Msa1003630-mRNA-1:cds;Parent=Msa1003630-mRNA-1
chr7_1 CDS 722808 722923 722808 ID=Msa1003630-mRNA-1:cds;Parent=Msa1003630-mRNA-1
chr7_1 three_prime_UTR 722559 722807 722559 ID=Msa1003630-mRNA-1:three_prime_utr;Parent=Msa1003630-mRNA-1
Gene Sequence

>Msa1003630

ATGAAATTTTCTCTCTATTGGATTTCTGCTGGTGTTAAAGAATGGCATGCTGTTGCTTCTTGGACTTGGGATGCACAGGATGAAACATGTGGGATCTGTAGGATGGCCTTTGATGGATGCTGTCCTGATTGTAAACTTCCTGGGGATGACTGTCCACTCATTTGGGGTGCATGCAATCACGCATTTCATTTACATTGTATCTTGAAATGGGTGAATTCTCAAACCTCACAAGCACATTGCCCAATGTGTCGTCGGGAATGGCAATTTAAAGGTTGA
Protein sequence

>Msa1003630

MKFSLYWISAGVKEWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG*