AlfalfaGEDB | Msa0483860

M. sativa cultivar zhongmu-4 / Msa0483860

KEGG: K03358
GO: -
PFAM: PF12861.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483860	XP_029124621.1	100.000	57	0	0	1	57	418	474	1.29e-38	142

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483860	sp\|Q9M9L0\|APC11_ARATH	100.000	56	0	0	1	56	28	83	5.58e-37	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483860	A2Q2S8	100.000	57	0	0	1	57	39	95	7.69e-36	124

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0483860	0.802951	4.396689e-49	-8.615850e-47
Msa0002930	Msa0483860	0.807046	6.118606e-50	-8.615850e-47
Msa0004860	Msa0483860	0.801931	7.131592e-49	-8.615850e-47
Msa0004920	Msa0483860	0.826498	2.625198e-54	-8.615850e-47
Msa0015300	Msa0483860	0.805151	1.533170e-49	-8.615850e-47
Msa0017510	Msa0483860	0.840434	8.715187e-58	-8.615850e-47
Msa0025730	Msa0483860	0.811323	7.415627e-51	-8.615850e-47
Msa0030380	Msa0483860	0.805142	1.539635e-49	-8.615850e-47
Msa0036430	Msa0483860	0.804425	2.173349e-49	-8.615850e-47
Msa0037700	Msa0483860	0.806933	6.467178e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483860	MtrunA17_Chr4g0001531	100.000	57	0	0	1	57	1	57	7.78e-39	122
Msa0483860	MtrunA17_Chr7g0214441	100.000	57	0	0	1	57	1	57	7.78e-39	122

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0483860	AT3G05870.1	100.000	56	1	56	31	86	5.19e-38	120
Msa0483860	AT3G05870.2	100.000	56	1	56	31	86	5.19e-38	120
Msa0483860	AT3G05870.6	100.000	56	1	56	31	86	5.19e-38	120
Msa0483860	AT3G05870.4	100.000	56	1	56	34	89	6.68e-38	120
Msa0483860	AT3G05870.3	100.000	56	1	56	34	89	6.68e-38	120
Msa0483860	AT3G05870.5	100.000	56	1	56	34	89	6.68e-38	120
Msa0483860	AT3G05870.7	100.000	56	1	56	22	77	9.44e-38	120

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Find 40 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTAATTTCAATCCCA+TGG	0.474150	3_4:+688787	None:intergenic
AAAGAAGATTTGAATTGAAA+AGG	0.400354	3_4:+691147	None:intergenic
AACATGTGGAATTTGTAGGA+TGG	0.713439	3_4:-690756	Msa0483860:exon
AATATCTCCATTGTTTCCAT+GGG	0.512610	3_4:-688803	Msa0483860:three_prime_UTR
ACATTGCCCAATGTGTCGTC+GGG	0.540781	3_4:-688990	Msa0483860:CDS
ACTAGACAAGACAAAGGAAA+AGG	0.484810	3_4:-691200	Msa0483860:five_prime_UTR
ATACATACGTTTGAATTTGC+GGG	0.399310	3_4:-691223	Msa0483860:five_prime_UTR
ATCAGGACAGCATCCATCAA+AGG	0.590910	3_4:+690733	None:intergenic
ATGAAACATGTGGAATTTGT+AGG	0.488299	3_4:-690760	Msa0483860:five_prime_UTR
ATGTTGTTGCTTCATGGACT+TGG	0.375530	3_4:-690793	Msa0483860:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACATACGTTTGAATTTGC+GGG	-	chr3_4:688722-688741	Msa0483860:three_prime_UTR	30.0%
GATTTGAATTGAAAAGGAGA+AGG	+	chr3_4:688795-688814	None:intergenic	30.0%
GGTTGAATGCAAAAATGAAA+AGG	+	chr3_4:688876-688895	None:intergenic	30.0%
CTAACTTTATACAGGTTGTT+TGG	-	chr3_4:688992-689011	Msa0483860:CDS	30.0%
CTTATCTCATCAAATGTAGA+TGG	-	chr3_4:689128-689147	Msa0483860:intron	30.0%
ATGAAACATGTGGAATTTGT+AGG	-	chr3_4:689185-689204	Msa0483860:intron	30.0%
AGATAATGTAACTTACTGAG+TGG	+	chr3_4:689262-689281	None:intergenic	30.0%
CTCAGTAAGTTACATTATCT+TGG	-	chr3_4:689262-689281	Msa0483860:intron	30.0%
ATTATCTTGGGATTTGTCTT+TGG	-	chr3_4:689275-689294	Msa0483860:intron	30.0%
AATTCAGCACAATAGAAAAG+TGG	+	chr3_4:689436-689455	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	688721	691246	688721	ID=Msa0483860;Name=Msa0483860
chr3_4	mRNA	688721	691246	688721	ID=Msa0483860-mRNA-1;Parent=Msa0483860;Name=Msa0483860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=317\|1\|1\|1\|0.5\|0.66\|3\|249\|57
chr3_4	exon	688721	689085	688721	ID=Msa0483860-mRNA-1:exon:237;Parent=Msa0483860-mRNA-1
chr3_4	exon	690702	690820	690702	ID=Msa0483860-mRNA-1:exon:236;Parent=Msa0483860-mRNA-1
chr3_4	exon	690991	691246	690991	ID=Msa0483860-mRNA-1:exon:235;Parent=Msa0483860-mRNA-1
chr3_4	five_prime_UTR	690991	691246	690991	ID=Msa0483860-mRNA-1:five_prime_utr;Parent=Msa0483860-mRNA-1
chr3_4	five_prime_UTR	690760	690820	690760	ID=Msa0483860-mRNA-1:five_prime_utr;Parent=Msa0483860-mRNA-1
chr3_4	CDS	690702	690759	690702	ID=Msa0483860-mRNA-1:cds;Parent=Msa0483860-mRNA-1
chr3_4	CDS	688970	689085	688970	ID=Msa0483860-mRNA-1:cds;Parent=Msa0483860-mRNA-1
chr3_4	three_prime_UTR	688721	688969	688721	ID=Msa0483860-mRNA-1:three_prime_utr;Parent=Msa0483860-mRNA-1

Gene Sequence	>Msa0483860 ATGGCCTTTGATGGATGCTGTCCTGATTGTAAACTTCCTGGGGATGACTGTCCACTCATTTGGGGTGCATGCAATCACGCATTTCATTTACATTGTATCTTGAAATGGGTGAATTCTCAAACCTCACAAGCACATTGCCCAATGTGTCGTCGGGAATGGCAATTTAAAGGTTGA
Protein sequence	>Msa0483860 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG*