AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004030 MtrunA17_Chr7g0214551 94.720 322 17 0 19 340 155 476 0.0 645
Msa1004030 MtrunA17_Chr7g0246701 55.031 318 142 1 24 340 216 533 3.96e-133 394
Msa1004030 MtrunA17_Chr8g0350391 52.038 319 151 2 24 340 220 538 1.01e-129 385
Msa1004030 MtrunA17_Chr6g0472571 55.799 319 135 3 24 340 220 534 4.07e-129 383
Msa1004030 MtrunA17_Chr8g0388881 50.000 332 164 2 24 354 213 543 3.92e-128 380
Msa1004030 MtrunA17_Chr1g0203741 51.887 318 152 1 24 340 208 525 1.65e-127 379
Msa1004030 MtrunA17_Chr8g0361791 50.000 356 165 5 3 354 177 523 2.30e-120 360
Msa1004030 MtrunA17_Chr4g0055031 50.602 332 157 3 24 354 201 526 6.12e-118 354
Msa1004030 MtrunA17_Chr5g0416991 49.699 332 158 3 24 354 199 522 6.86e-115 346
Msa1004030 MtrunA17_Chr3g0092501 47.175 354 174 5 3 354 178 520 1.12e-110 335
Msa1004030 MtrunA17_Chr5g0409411 45.349 344 177 8 14 354 179 514 3.95e-98 302
Msa1004030 MtrunA17_Chr8g0369481 45.278 360 183 9 2 355 162 513 2.80e-96 298
Msa1004030 MtrunA17_Chr8g0350351 42.857 336 168 8 24 355 203 518 3.93e-83 264
Msa1004030 MtrunA17_Chr1g0187601 43.465 329 167 9 29 354 221 533 4.72e-83 264
Msa1004030 MtrunA17_Chr1g0183721 40.934 364 189 11 1 354 157 504 1.10e-81 260
Msa1004030 MtrunA17_Chr1g0167381 42.857 329 169 9 29 354 222 534 4.32e-81 259
Msa1004030 MtrunA17_Chr7g0246681 41.667 360 181 10 2 354 167 504 1.42e-79 254
Msa1004030 MtrunA17_Chr3g0113981 41.193 352 171 13 1 340 257 584 5.47e-76 247
Msa1004030 MtrunA17_Chr5g0437501 39.452 365 191 12 1 355 190 534 3.41e-74 241
Msa1004030 MtrunA17_Chr3g0130381 39.295 369 193 9 1 355 350 701 1.88e-73 242
Msa1004030 MtrunA17_Chr3g0112341 40.462 346 181 11 3 340 248 576 4.09e-73 239
Msa1004030 MtrunA17_Chr1g0159741 42.222 315 160 9 31 340 268 565 8.98e-72 235
Msa1004030 MtrunA17_Chr3g0125511 38.005 371 197 12 1 354 315 669 3.51e-67 225
Msa1004030 MtrunA17_Chr5g0435751 39.264 326 174 10 35 355 235 541 1.35e-66 221
Msa1004030 MtrunA17_Chr8g0384431 37.027 370 201 11 1 354 380 733 8.64e-65 219
Msa1004030 MtrunA17_Chr8g0372471 36.364 363 209 8 1 354 468 817 1.44e-64 220
Msa1004030 MtrunA17_Chr1g0171781 38.941 321 168 8 25 340 211 508 5.61e-62 208
Msa1004030 MtrunA17_Chr3g0115931 35.000 340 176 12 25 340 277 595 2.47e-51 181
Msa1004030 MtrunA17_Chr5g0426281 34.337 332 175 9 31 340 267 577 5.44e-50 177
Msa1004030 MtrunA17_Chr1g0155141 33.241 361 199 14 3 355 297 623 5.00e-49 175
Msa1004030 MtrunA17_Chr4g0043121 35.500 200 111 4 24 218 210 396 3.16e-37 139
Msa1004030 MtrunA17_Chr5g0404771 46.667 135 69 1 1 132 411 545 8.91e-36 137
Msa1004030 MtrunA17_Chr5g0404761 33.014 209 119 8 158 355 1 199 3.87e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004030 AT2G43200.2 57.778 315 129 2 26 340 209 519 2.54e-133 394
Msa1004030 AT2G43200.1 57.778 315 129 2 26 340 209 519 2.54e-133 394
Msa1004030 AT4G10440.1 52.960 321 149 1 20 340 206 524 9.77e-133 393
Msa1004030 AT1G33170.1 51.929 337 158 3 20 354 223 557 2.09e-131 390
Msa1004030 AT2G45750.1 54.037 322 143 3 24 340 202 523 1.42e-129 385
Msa1004030 AT1G26850.2 52.711 332 155 2 24 354 201 531 1.13e-127 379
Msa1004030 AT1G26850.1 52.711 332 155 2 24 354 201 531 1.13e-127 379
Msa1004030 AT4G00750.1 50.625 320 155 2 24 340 211 530 5.26e-123 368
Msa1004030 AT1G26850.3 53.289 304 141 1 24 327 201 503 2.33e-119 354
Msa1004030 AT4G18030.1 49.371 318 154 3 24 340 200 511 7.10e-106 323
Msa1004030 AT1G31850.1 45.179 363 179 11 3 355 169 521 3.57e-99 306
Msa1004030 AT1G31850.2 45.179 363 179 11 3 355 169 521 3.57e-99 306
Msa1004030 AT1G31850.4 45.179 363 179 11 3 355 169 521 3.57e-99 306
Msa1004030 AT1G31850.3 45.179 363 179 11 3 355 169 521 3.57e-99 306
Msa1004030 AT4G19120.3 45.845 349 168 9 2 340 162 499 2.01e-97 298
Msa1004030 AT4G19120.1 44.658 365 180 10 2 355 162 515 4.32e-97 300
Msa1004030 AT4G19120.2 44.658 365 180 10 2 355 162 515 4.32e-97 300
Msa1004030 AT4G00740.1 44.410 322 152 10 24 340 196 495 4.55e-80 256
Msa1004030 AT4G00740.2 44.410 322 152 10 24 340 196 495 4.55e-80 256
Msa1004030 AT4G14360.1 42.249 329 171 9 29 354 206 518 5.74e-80 256
Msa1004030 AT4G14360.2 42.249 329 171 9 29 354 206 518 5.74e-80 256
Msa1004030 AT1G04430.1 43.243 333 166 9 27 354 212 526 2.36e-79 254
Msa1004030 AT1G04430.3 43.243 333 166 9 27 354 212 526 2.36e-79 254
Msa1004030 AT1G04430.2 43.243 333 166 9 27 354 212 526 2.36e-79 254
Msa1004030 AT2G40280.1 40.000 375 179 13 1 355 172 520 2.08e-77 249
Msa1004030 AT3G23300.2 41.033 329 175 9 29 354 209 521 1.46e-76 247
Msa1004030 AT3G23300.1 41.033 329 175 9 29 354 209 521 1.46e-76 247
Msa1004030 AT5G14430.2 42.623 366 175 12 3 355 177 520 1.33e-74 242
Msa1004030 AT5G14430.1 42.623 366 175 12 3 355 177 520 1.46e-74 242
Msa1004030 AT5G06050.1 40.751 346 180 10 3 340 244 572 2.28e-74 243
Msa1004030 AT2G39750.1 41.587 315 162 9 31 340 303 600 2.69e-73 240
Msa1004030 AT3G56080.2 38.005 371 193 13 2 355 197 547 1.49e-72 235
Msa1004030 AT3G56080.1 38.005 371 193 13 2 355 197 547 6.75e-72 235
Msa1004030 AT5G64030.1 38.420 367 200 9 1 354 390 743 8.99e-71 236
Msa1004030 AT1G77260.1 38.329 347 189 10 2 340 235 564 2.14e-70 232
Msa1004030 AT2G34300.2 38.965 367 196 10 1 355 332 682 1.32e-68 229
Msa1004030 AT2G34300.3 38.965 367 196 10 1 355 332 682 1.32e-68 229
Msa1004030 AT2G34300.1 38.965 367 196 10 1 355 332 682 1.32e-68 229
Msa1004030 AT1G29470.1 37.978 366 201 10 1 355 332 682 2.86e-66 223
Msa1004030 AT1G29470.2 37.978 366 201 10 1 355 332 682 2.86e-66 223
Msa1004030 AT5G04060.1 40.625 320 161 10 25 340 208 502 7.12e-64 213
Msa1004030 AT3G51070.2 36.856 369 203 12 1 354 463 816 1.29e-63 217
Msa1004030 AT3G51070.1 36.856 369 203 12 1 354 463 816 1.65e-63 217
Msa1004030 AT3G10200.1 38.226 327 172 10 25 346 197 498 2.90e-62 209
Msa1004030 AT3G10200.2 38.226 327 172 10 25 346 197 498 5.43e-62 208
Msa1004030 AT1G78240.1 36.905 336 171 12 26 340 270 585 2.26e-52 184
Msa1004030 AT1G78240.2 36.905 336 171 12 26 340 270 585 2.26e-52 184
Msa1004030 AT1G19430.1 34.125 337 186 10 12 340 325 633 5.80e-50 178
Msa1004030 AT1G19430.3 34.125 337 186 10 12 340 325 633 5.80e-50 178
Msa1004030 AT1G13860.2 31.722 331 184 10 31 340 45 354 5.38e-48 168
Msa1004030 AT1G13860.4 31.722 331 184 10 31 340 201 510 6.44e-47 168
Msa1004030 AT1G13860.3 31.722 331 184 10 31 340 201 510 6.44e-47 168
Msa1004030 AT1G13860.1 31.722 331 184 10 31 340 201 510 6.44e-47 168
Msa1004030 AT1G13860.5 31.722 331 184 10 31 340 201 510 6.44e-47 168
Msa1004030 AT2G03480.2 31.707 328 164 7 31 340 217 502 3.51e-44 160
Msa1004030 AT2G03480.1 31.707 328 175 8 31 340 217 513 4.89e-43 157
Msa1004030 AT1G19430.2 31.544 298 169 10 12 301 325 595 9.48e-35 134
Msa1004030 AT2G03480.3 36.170 188 112 3 31 218 217 396 1.63e-33 129

Find 87 sgRNAs with CRISPR-Local

Find 536 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCAAAATTCATGAAAA+AGG 0.136673 7_1:-1198124 None:intergenic
TTCTCTACTGTTCTTGTTCT+TGG 0.138489 7_1:+1198407 Msa1004030:CDS
CACCTGTTATACCCTAATTT+TGG 0.151743 7_1:-1198246 None:intergenic
CAATGGTGAAATATCCAATT+TGG 0.193135 7_1:+1204726 Msa1004030:CDS
TCACGTGTACATGTTATTTA+TGG 0.197906 7_1:+1198368 Msa1004030:exon
GAAGCTTCTTCCTGTGAATT+TGG 0.239943 7_1:+1198434 Msa1004030:CDS
AATAAGCTGAAAATAGTTTA+TGG 0.246473 7_1:+1205016 Msa1004030:three_prime_UTR
TTTCTGGACCACAAATAAAT+TGG 0.249795 7_1:+1203975 Msa1004030:CDS
ACAACATTCATAACCCAAAT+TGG 0.256308 7_1:-1204740 None:intergenic
ATTCTTATCATAAATTAAAA+AGG 0.263907 7_1:-1204868 None:intergenic
ACATGCATGTATAAAAGATT+TGG 0.264022 7_1:+1198313 Msa1004030:five_prime_UTR
CCCTTCAAAATCATTTGATA+TGG 0.266363 7_1:+1199159 Msa1004030:CDS
TCATTGATGTCTTTCACTTC+TGG 0.292692 7_1:-1204479 None:intergenic
TTTGTATACACAGCTAAATT+AGG 0.298556 7_1:+1204896 Msa1004030:three_prime_UTR
TCTCTACTGTTCTTGTTCTT+GGG 0.320816 7_1:+1198408 Msa1004030:CDS
TATCATGTTATCTTCACTAT+AGG 0.327369 7_1:-1204597 None:intergenic
GGTGAATCATTCAATCTTAT+AGG 0.330952 7_1:-1204530 None:intergenic
AAGTTATCCGAGAGAGCTTA+TGG 0.332593 7_1:+1204992 Msa1004030:three_prime_UTR
AAATCCTGTCAATCTCTCTT+AGG 0.341526 7_1:-1203928 None:intergenic
GTCCAAAATTAGGGTATAAC+AGG 0.347054 7_1:+1198244 Msa1004030:five_prime_UTR
CACGTGTACATGTTATTTAT+GGG 0.360317 7_1:+1198369 Msa1004030:exon
AAACATCTGTGACACTGTTT+AGG 0.371290 7_1:-1205068 None:intergenic
CTTCCTGTGAATTTGGAGTC+TGG 0.384232 7_1:+1198441 Msa1004030:CDS
ATAGTGAAGATAACATGATA+TGG 0.389539 7_1:+1204600 Msa1004030:CDS
TGATTGAAGGTTGCAAGCTT+TGG 0.399127 7_1:+1199001 Msa1004030:intron
TGGTAAATATAGAAATGTTA+TGG 0.402597 7_1:+1204670 Msa1004030:CDS
ATGGATATGAATGCTGGCTT+TGG 0.406035 7_1:+1204689 Msa1004030:CDS
CATGCATGTATAAAAGATTT+GGG 0.406278 7_1:+1198314 Msa1004030:five_prime_UTR
AATGGTGAAATATCCAATTT+GGG 0.407680 7_1:+1204727 Msa1004030:CDS
GCTCTAGATGCCTTGTCCCT+TGG 0.411319 7_1:+1199188 Msa1004030:CDS
TTTACCCTCCAATTTATTTG+TGG 0.416538 7_1:-1203983 None:intergenic
TACATGTTATTTATGGGTGA+TGG 0.426202 7_1:+1198375 Msa1004030:exon
CCGGCGGTGTTCTTGAGAAA+TGG 0.427968 7_1:+1204507 Msa1004030:CDS
AGGGAGGACAAATTGCTATA+TGG 0.430166 7_1:+1204101 Msa1004030:CDS
AAAGACATCAATGAAATTGC+CGG 0.434225 7_1:+1204488 Msa1004030:CDS
CTTGTCCCTTGGACTGCTAA+TGG 0.434823 7_1:+1199199 Msa1004030:CDS
GTTAGAACAGTTCTTGATGT+TGG 0.436055 7_1:+1198468 Msa1004030:CDS
CTGTGAATTTGGAGTCTGGA+AGG 0.436736 7_1:+1198445 Msa1004030:CDS
ATCTATGAAAGAGGCCTCAT+AGG 0.437014 7_1:+1204797 Msa1004030:CDS
ATGTCTTTCACTTCTGGAAG+AGG 0.438630 7_1:-1204473 None:intergenic
GATATGAATGCTGGCTTTGG+TGG 0.443506 7_1:+1204692 Msa1004030:CDS
AGCAAAATGAATTTACTACT+TGG 0.459844 7_1:-1206356 None:intergenic
ATGCTCAAATCACTCTCATC+TGG 0.459974 7_1:+1204650 Msa1004030:CDS
ATGACTTGAAATGCAAGAAA+AGG 0.460271 7_1:+1198199 Msa1004030:five_prime_UTR
TTGGAGTATTCAGCACTCAT+AGG 0.463802 7_1:+1199128 Msa1004030:CDS
TCAGATGAACTGCAAAACTT+TGG 0.464786 7_1:-1204178 None:intergenic
CTTATTTCCATAAGCTCTCT+CGG 0.483332 7_1:-1204999 None:intergenic
GTGATGTTTGCACTTGAAAG+AGG 0.484883 7_1:+1199091 Msa1004030:CDS
TATACCTAAGAGAGATTGAC+AGG 0.491017 7_1:+1203924 Msa1004030:CDS
TTATGTAATCAATGAAACTA+AGG 0.491804 7_1:-1198272 None:intergenic
AAAGGAACAGAACAGTTTAG+AGG 0.493506 7_1:+1204042 Msa1004030:CDS
CTGGACCACAAATAAATTGG+AGG 0.497081 7_1:+1203978 Msa1004030:CDS
TGGTGGATTTGCAGCTGCAA+TGG 0.501062 7_1:+1204709 Msa1004030:CDS
TTTAGGAGAGCTTAAAGAAA+CGG 0.503218 7_1:-1205051 None:intergenic
AGAGGACTTCCTGCTATGCT+TGG 0.504822 7_1:+1199109 Msa1004030:CDS
CTGTACAAGTACAACATGCT+TGG 0.508994 7_1:+1206385 Msa1004030:three_prime_UTR
TCTCGGATAACTTATGAAAA+CGG 0.509006 7_1:-1204982 None:intergenic
TCATAGGAACTTACATGGAT+TGG 0.511002 7_1:+1204813 Msa1004030:CDS
ACATGTTATTTATGGGTGAT+GGG 0.511624 7_1:+1198376 Msa1004030:exon
CTTGGCATTATCTATGAAAG+AGG 0.515659 7_1:+1204788 Msa1004030:CDS
AGAGTCAAAAGTGTTGGAAA+AGG 0.516496 7_1:+1204024 Msa1004030:CDS
AACTTGCAATCCAAATGTGT+TGG 0.519697 7_1:+1204065 Msa1004030:CDS
ACAAGAACAGTAGAGAAAAG+TGG 0.521510 7_1:-1198401 None:intergenic
AGTTCATCTGACTCTGATGC+TGG 0.524185 7_1:+1204190 Msa1004030:CDS
CTGAATACTCCAAGCATAGC+AGG 0.524451 7_1:-1199118 None:intergenic
ACAGTTCTTGATGTTGGATG+TGG 0.528742 7_1:+1198474 Msa1004030:CDS
TGAGCATCATGTTCATCACT+TGG 0.541880 7_1:-1199067 None:intergenic
GCAAACAGAGTCAAAAGTGT+TGG 0.546249 7_1:+1204018 Msa1004030:CDS
TGTGAATTTGGAGTCTGGAA+GGG 0.562151 7_1:+1198446 Msa1004030:CDS
AGGCCTCATAGGAACTTACA+TGG 0.568438 7_1:+1204808 Msa1004030:CDS
AACATTGAAATAAGATGCAG+AGG 0.571601 7_1:+1198147 Msa1004030:five_prime_UTR
AATGTTATGGATATGAATGC+TGG 0.574824 7_1:+1204683 Msa1004030:CDS
AAGTTACCATTAGCAGTCCA+AGG 0.575360 7_1:-1199205 None:intergenic
AATCCATGTAAGTTCCTATG+AGG 0.584131 7_1:-1204811 None:intergenic
TGGACCACAAATAAATTGGA+GGG 0.584862 7_1:+1203979 Msa1004030:CDS
CATTAGCAGTCCAAGGGACA+AGG 0.591170 7_1:-1199198 None:intergenic
CTTCCAGACTCCAAATTCAC+AGG 0.593734 7_1:-1198444 None:intergenic
CAGTTCTTGATGTTGGATGT+GGG 0.600933 7_1:+1198475 Msa1004030:CDS
GGAGGGTAAACTATAAAGCA+TGG 0.605189 7_1:+1203996 Msa1004030:CDS
CCATTTCTCAAGAACACCGC+CGG 0.607799 7_1:-1204507 None:intergenic
TTAAAGTCAGTGTTCATGCA+TGG 0.622517 7_1:-1206465 None:intergenic
CATCTGACTCTGATGCTGGA+TGG 0.629905 7_1:+1204194 Msa1004030:CDS
AGTTCTTGATGTTGGATGTG+GGG 0.672357 7_1:+1198476 Msa1004030:CDS
AGTTACCATTAGCAGTCCAA+GGG 0.675724 7_1:-1199204 None:intergenic
GAAAGTACCCAAAATCCACC+AGG 0.676473 7_1:-1203956 None:intergenic
GACATCAATGAAATTGCCGG+CGG 0.688524 7_1:+1204491 Msa1004030:CDS
GATTGAATGATTCACCACCA+AGG 0.701587 7_1:+1204537 Msa1004030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATACAAAATACAAA+AGG - chr7_1:1198759-1198778 None:intergenic 10.0%
!!! TAATAAAAACTTACTTTTTT+TGG + chr7_1:1199697-1199716 Msa1004030:intron 10.0%
!!! TTGATTTTAAGTTTAAAAAT+TGG + chr7_1:1200235-1200254 Msa1004030:intron 10.0%
!! TTTGTTAAAATCTTAAAAAA+TGG - chr7_1:1201351-1201370 None:intergenic 10.0%
!! ATAAGAAAAGTTAATAAAAT+TGG + chr7_1:1203128-1203147 Msa1004030:intron 10.0%
!! TAAGAAAAGTTAATAAAATT+GGG + chr7_1:1203129-1203148 Msa1004030:intron 10.0%
!! TATATTTAATATAGAGAATT+TGG + chr7_1:1203842-1203861 Msa1004030:intron 10.0%
!! ATTCTTATCATAAATTAAAA+AGG - chr7_1:1204871-1204890 None:intergenic 10.0%
!!! ATTTATATTTTTCTATAAGT+TGG + chr7_1:1205992-1206011 Msa1004030:intron 10.0%
!!! TTTTTTTTTTTTGTAAAACA+TGG + chr7_1:1206136-1206155 Msa1004030:intron 10.0%
!!! TTTTTTTTTTTGTAAAACAT+GGG + chr7_1:1206137-1206156 Msa1004030:intron 10.0%
!!! ATTGAAAGAAATTTTAACAT+AGG + chr7_1:1198086-1198105 Msa1004030:five_prime_UTR 15.0%
!!! ACTGATAATGATTTTTTTAA+TGG + chr7_1:1198342-1198361 Msa1004030:five_prime_UTR 15.0%
!!! CTGATAATGATTTTTTTAAT+GGG + chr7_1:1198343-1198362 Msa1004030:five_prime_UTR 15.0%
!!! TTTAATTCGTTTTTTTCATT+CGG + chr7_1:1198778-1198797 Msa1004030:intron 15.0%
!!! ATTCATTTTAGGTATTTATA+TGG - chr7_1:1198963-1198982 None:intergenic 15.0%
!!! TTAATACACAAATTCATTTT+AGG - chr7_1:1198974-1198993 None:intergenic 15.0%
!!! AATTATTCTATTTTCTCAAA+GGG + chr7_1:1199559-1199578 Msa1004030:intron 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG + chr7_1:1200128-1200147 Msa1004030:intron 15.0%
!!! AAAATGTTTTTTGTTTTTGT+TGG + chr7_1:1200212-1200231 Msa1004030:intron 15.0%
!!! TTTTGATTAAGAAAATGAAA+AGG + chr7_1:1200368-1200387 Msa1004030:intron 15.0%
!!! TCTAAGATTGATTAAAATAT+GGG - chr7_1:1200956-1200975 None:intergenic 15.0%
!!! TGATTTTTACTTGTTAATAT+TGG - chr7_1:1201429-1201448 None:intergenic 15.0%
!! AATAAAATAAAATGACTGAA+AGG + chr7_1:1203071-1203090 Msa1004030:intron 15.0%
!!! TTAATTTAATTTGTCAAAGA+TGG + chr7_1:1203899-1203918 Msa1004030:intron 15.0%
!!! ATGCATTTTATATGATTTAT+TGG - chr7_1:1204133-1204152 None:intergenic 15.0%
!! CATAAATAATAGTAAAATAC+AGG - chr7_1:1204279-1204298 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr7_1:1205601-1205620 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr7_1:1205704-1205723 None:intergenic 15.0%
!! AATGATTAAAAGAAAGATAA+TGG - chr7_1:1205761-1205780 None:intergenic 15.0%
!! TTTATTTAAGAATCATTTGA+TGG - chr7_1:1206084-1206103 None:intergenic 15.0%
!! TTTGCAAAATTCATGAAAAA+GGG - chr7_1:1198126-1198145 None:intergenic 20.0%
!! ATTTGCAAAATTCATGAAAA+AGG - chr7_1:1198127-1198146 None:intergenic 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + chr7_1:1198235-1198254 Msa1004030:five_prime_UTR 20.0%
!! TTATGTAATCAATGAAACTA+AGG - chr7_1:1198275-1198294 None:intergenic 20.0%
!! TATTAAATGTGTATGATTGA+AGG + chr7_1:1198988-1199007 Msa1004030:intron 20.0%
!!! CAATTATTCTATTTTCTCAA+AGG + chr7_1:1199558-1199577 Msa1004030:intron 20.0%
!! TATAAATAGAAGTTATGTCT+TGG + chr7_1:1199628-1199647 Msa1004030:intron 20.0%
!! AAGAAAAAATAAGATATCAC+CGG - chr7_1:1199894-1199913 None:intergenic 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG + chr7_1:1199894-1199913 Msa1004030:intron 20.0%
!!! AAAATTGGAATTTTGAAGAA+TGG + chr7_1:1200250-1200269 Msa1004030:intron 20.0%
!! AAATGAAAAGGAAAATTCAA+TGG + chr7_1:1200380-1200399 Msa1004030:intron 20.0%
!! AATGAAAAGGAAAATTCAAT+GGG + chr7_1:1200381-1200400 Msa1004030:intron 20.0%
!! AAGAAAAATAGAGATGAATA+TGG + chr7_1:1200733-1200752 Msa1004030:intron 20.0%
!! AGAAAAATAGAGATGAATAT+GGG + chr7_1:1200734-1200753 Msa1004030:intron 20.0%
!! ATATGAAACATGAAATGAAA+AGG + chr7_1:1200781-1200800 Msa1004030:intron 20.0%
!! TAAGATTGATTAAAATATGG+GGG - chr7_1:1200954-1200973 None:intergenic 20.0%
!! CTAAGATTGATTAAAATATG+GGG - chr7_1:1200955-1200974 None:intergenic 20.0%
!!! CTCTAAGATTGATTAAAATA+TGG - chr7_1:1200957-1200976 None:intergenic 20.0%
!! TCTAATACTTTGATATATGA+TGG - chr7_1:1201185-1201204 None:intergenic 20.0%
!! TATAAACATGCTTATATAAG+GGG - chr7_1:1201760-1201779 None:intergenic 20.0%
!! GTATAAACATGCTTATATAA+GGG - chr7_1:1201761-1201780 None:intergenic 20.0%
!! TTATATAAGCATGTTTATAC+CGG + chr7_1:1201761-1201780 Msa1004030:intron 20.0%
!! TAGATCTAAACTTGAAATTA+GGG + chr7_1:1202063-1202082 Msa1004030:intron 20.0%
!!! CAAAACTTTTAAGTCTTTTT+TGG - chr7_1:1203013-1203032 None:intergenic 20.0%
!! AACCAATAAAAAACACAAAA+CGG + chr7_1:1203185-1203204 Msa1004030:intron 20.0%
!!! AGAATTGAACAAGTATTTTT+AGG + chr7_1:1203703-1203722 Msa1004030:intron 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + chr7_1:1198235-1198254 Msa1004030:five_prime_UTR 20.0%
!! GAAGTTTGAATATAAAACAT+TGG - chr7_1:1204403-1204422 None:intergenic 20.0%
!! TGGTAAATATAGAAATGTTA+TGG + chr7_1:1204670-1204689 Msa1004030:CDS 20.0%
!! AATAAGCTGAAAATAGTTTA+TGG + chr7_1:1205016-1205035 Msa1004030:three_prime_UTR 20.0%
!!! TTTTTGTTTAACTTCAAACT+TGG + chr7_1:1205491-1205510 Msa1004030:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr7_1:1205641-1205660 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr7_1:1205718-1205737 Msa1004030:intron 20.0%
!! AAACTATCCTTATTAACTAT+TGG - chr7_1:1205728-1205747 None:intergenic 20.0%
!! AATAGTTAATAAGGATAGTT+TGG + chr7_1:1205727-1205746 Msa1004030:intron 20.0%
!! GATTTAATTAATGCACTATA+AGG - chr7_1:1205912-1205931 None:intergenic 20.0%
!! ATTAAGGGTCTTAAAAATAA+GGG + chr7_1:1206035-1206054 Msa1004030:intron 20.0%
!! TCTTAAAAATAAGGGATTAA+GGG + chr7_1:1206043-1206062 Msa1004030:intron 20.0%
!! AAAATAGGACAAAGATAATA+AGG - chr7_1:1206228-1206247 None:intergenic 20.0%
!!! TACTTTTGATTGAGAAAAAT+AGG - chr7_1:1206243-1206262 None:intergenic 20.0%
!!! TATATGCTTCATTTTGATTA+TGG + chr7_1:1206318-1206337 Msa1004030:intron 20.0%
!! ATTGTTTGAGTCTTTTCAAT+TGG - chr7_1:1198058-1198077 None:intergenic 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + chr7_1:1198234-1198253 Msa1004030:five_prime_UTR 25.0%
! ACATGCATGTATAAAAGATT+TGG + chr7_1:1198313-1198332 Msa1004030:five_prime_UTR 25.0%
! CATGCATGTATAAAAGATTT+GGG + chr7_1:1198314-1198333 Msa1004030:five_prime_UTR 25.0%
! TCGTAGTTGCTATAATATAA+AGG + chr7_1:1198621-1198640 Msa1004030:intron 25.0%
!! CCATATCAAATGATTTTGAA+GGG - chr7_1:1199162-1199181 None:intergenic 25.0%
! ATTATTACCAGTGTCAATAT+CGG - chr7_1:1199340-1199359 None:intergenic 25.0%
! ATTAAATGTAACCACATCAT+CGG + chr7_1:1199376-1199395 Msa1004030:intron 25.0%
!!! ACATGTTTTATCTTGGTTTT+CGG + chr7_1:1199834-1199853 Msa1004030:intron 25.0%
!! TATGTTTGAACCTTTTAAAC+CGG + chr7_1:1199872-1199891 Msa1004030:intron 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG + chr7_1:1199893-1199912 Msa1004030:intron 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG + chr7_1:1199898-1199917 Msa1004030:intron 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG + chr7_1:1199899-1199918 Msa1004030:intron 25.0%
! TTCTTCATTTAGCAAACTTT+AGG - chr7_1:1200082-1200101 None:intergenic 25.0%
!!! AAGTTTGCTAAATGAAGAAT+TGG + chr7_1:1200083-1200102 Msa1004030:intron 25.0%
!!! CATTTTTTGAAAGAGAACTA+CGG - chr7_1:1200198-1200217 None:intergenic 25.0%
! ATTGAGATTATGAAAAGAGT+GGG + chr7_1:1200294-1200313 Msa1004030:intron 25.0%
!!! TGATGTTGTTCACATTTTTT+TGG + chr7_1:1200441-1200460 Msa1004030:intron 25.0%
! GTATGTTTAGATGAATGTTT+AGG - chr7_1:1200493-1200512 None:intergenic 25.0%
!! TTCTAGCTATTTATCTAAAG+TGG + chr7_1:1200542-1200561 Msa1004030:intron 25.0%
!!! TTCCTATGCTTTTAATTTCT+TGG - chr7_1:1200661-1200680 None:intergenic 25.0%
! AAAGTTAGAATGTAACACTT+AGG - chr7_1:1200696-1200715 None:intergenic 25.0%
! TAAGTGTTACATTCTAACTT+TGG + chr7_1:1200695-1200714 Msa1004030:intron 25.0%
! AGAAAGACACTATAACATAA+AGG + chr7_1:1200840-1200859 Msa1004030:intron 25.0%
!!! AGCAATTATGAAGCATTTTT+AGG + chr7_1:1201025-1201044 Msa1004030:intron 25.0%
! TGTGGAATTAAGTGTAAAAT+AGG - chr7_1:1201051-1201070 None:intergenic 25.0%
!!! GTTATGTAAATAGCTTTATG+TGG - chr7_1:1201069-1201088 None:intergenic 25.0%
! ATATATGTGATGTTTCTCAT+TGG - chr7_1:1201260-1201279 None:intergenic 25.0%
!! TAATATTGGCTGGAAAATAT+TGG - chr7_1:1201415-1201434 None:intergenic 25.0%
!!! TTTTACTTGTTAATATTGGC+TGG - chr7_1:1201425-1201444 None:intergenic 25.0%
!!! AAAGCACTAGGAAAATTTTT+AGG + chr7_1:1201474-1201493 Msa1004030:intron 25.0%
!!! GGAACTTTCTAAAACATTTT+TGG + chr7_1:1201495-1201514 Msa1004030:intron 25.0%
! ATAAACATGCTTATATAAGG+GGG - chr7_1:1201759-1201778 None:intergenic 25.0%
! GGTATAAACATGCTTATATA+AGG - chr7_1:1201762-1201781 None:intergenic 25.0%
!! AAGTTTTCAAAAATAGACAG+AGG - chr7_1:1201966-1201985 None:intergenic 25.0%
!!! CTAGTGAGTTTTAGAAAAAA+CGG - chr7_1:1202036-1202055 None:intergenic 25.0%
! GTAGATCTAAACTTGAAATT+AGG + chr7_1:1202062-1202081 Msa1004030:intron 25.0%
!! TTTTTAACGATTTTCGAAAG+AGG + chr7_1:1202104-1202123 Msa1004030:intron 25.0%
! GATTGAAAACTGAGAAATAA+CGG + chr7_1:1202180-1202199 Msa1004030:intron 25.0%
! TGTTGAATCCGAAAATAAAT+CGG + chr7_1:1202272-1202291 Msa1004030:intron 25.0%
!! AACACGATCACAAATAATTT+TGG - chr7_1:1202363-1202382 None:intergenic 25.0%
!!! TGTTGATTTTCGTTTGTTTT+TGG + chr7_1:1202537-1202556 Msa1004030:intron 25.0%
! AGTTTCCAAAATTGCAAAAA+GGG - chr7_1:1202912-1202931 None:intergenic 25.0%
! AAGTTTCCAAAATTGCAAAA+AGG - chr7_1:1202913-1202932 None:intergenic 25.0%
!!! TTGCAATTTTGGAAACTTTA+AGG + chr7_1:1202915-1202934 Msa1004030:intron 25.0%
!!! ATGCAATTTTAAGACTTAAG+TGG + chr7_1:1202970-1202989 Msa1004030:intron 25.0%
!!! CTTTTCTTATTTTAGTCCTA+AGG - chr7_1:1203118-1203137 None:intergenic 25.0%
!!! CCAAGAATCCATTTTAAAAT+TGG - chr7_1:1203328-1203347 None:intergenic 25.0%
!!! CCAATTTTAAAATGGATTCT+TGG + chr7_1:1203325-1203344 Msa1004030:intron 25.0%
! ACTTATTCAGACTATTTGAA+AGG + chr7_1:1203525-1203544 Msa1004030:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + chr7_1:1198234-1198253 Msa1004030:five_prime_UTR 25.0%
!! ATTTTTGTATACCTGTTCAA+TGG - chr7_1:1204437-1204456 None:intergenic 25.0%
! TATCATGTTATCTTCACTAT+AGG - chr7_1:1204600-1204619 None:intergenic 25.0%
! ATAGTGAAGATAACATGATA+TGG + chr7_1:1204600-1204619 Msa1004030:CDS 25.0%
! AATGGTGAAATATCCAATTT+GGG + chr7_1:1204727-1204746 Msa1004030:CDS 25.0%
! TTTGTATACACAGCTAAATT+AGG + chr7_1:1204896-1204915 Msa1004030:three_prime_UTR 25.0%
! TGAATAAAAATGAGTCTGTT+AGG - chr7_1:1205124-1205143 None:intergenic 25.0%
!!! TTTAAAATGGGTGTCATTTT+AGG - chr7_1:1205809-1205828 None:intergenic 25.0%
!!! AAATGACACCCATTTTAAAA+CGG + chr7_1:1205810-1205829 Msa1004030:intron 25.0%
! GATTAAGGGTCTTAAAAATA+AGG + chr7_1:1206034-1206053 Msa1004030:intron 25.0%
! GTCTTAAAAATAAGGGATTA+AGG + chr7_1:1206042-1206061 Msa1004030:intron 25.0%
! AGCAAAATGAATTTACTACT+TGG - chr7_1:1206359-1206378 None:intergenic 25.0%
AACATTGAAATAAGATGCAG+AGG + chr7_1:1198147-1198166 Msa1004030:five_prime_UTR 30.0%
ATGACTTGAAATGCAAGAAA+AGG + chr7_1:1198199-1198218 Msa1004030:five_prime_UTR 30.0%
!! AGCATTGAGCTAGTATTTTT+AGG + chr7_1:1198222-1198241 Msa1004030:five_prime_UTR 30.0%
! TCACGTGTACATGTTATTTA+TGG + chr7_1:1198368-1198387 Msa1004030:exon 30.0%
! CACGTGTACATGTTATTTAT+GGG + chr7_1:1198369-1198388 Msa1004030:exon 30.0%
! TACATGTTATTTATGGGTGA+TGG + chr7_1:1198375-1198394 Msa1004030:exon 30.0%
! ACATGTTATTTATGGGTGAT+GGG + chr7_1:1198376-1198395 Msa1004030:exon 30.0%
! TTTTTCATTCGGTTCAATCA+TGG + chr7_1:1198789-1198808 Msa1004030:intron 30.0%
!! CAATGTTTTAAATACCAAGC+TGG - chr7_1:1198861-1198880 None:intergenic 30.0%
CCCTTCAAAATCATTTGATA+TGG + chr7_1:1199159-1199178 Msa1004030:CDS 30.0%
! GCCATATCAAATGATTTTGA+AGG - chr7_1:1199163-1199182 None:intergenic 30.0%
! ATTCTATTTTCTCAAAGGGT+TGG + chr7_1:1199563-1199582 Msa1004030:intron 30.0%
! TTCTATTTTCTCAAAGGGTT+GGG + chr7_1:1199564-1199583 Msa1004030:intron 30.0%
CAACGGTAATAATTTGAGAA+AGG - chr7_1:1199761-1199780 None:intergenic 30.0%
! AGATGCTACATGTTTTATCT+TGG + chr7_1:1199827-1199846 Msa1004030:intron 30.0%
!! CATGTTTTATCTTGGTTTTC+GGG + chr7_1:1199835-1199854 Msa1004030:intron 30.0%
!! TAAGATATCACCGGTTTAAA+AGG - chr7_1:1199885-1199904 None:intergenic 30.0%
TAGGATACTATAGTCGTTAT+GGG - chr7_1:1199993-1200012 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+TGG - chr7_1:1199994-1200013 None:intergenic 30.0%
TAACGACTATAGTATCCTAT+AGG + chr7_1:1199994-1200013 Msa1004030:intron 30.0%
AAATTAAAGACGGTTCCTAT+AGG - chr7_1:1200012-1200031 None:intergenic 30.0%
TTTGCTAAATGAAGAATTGG+AGG + chr7_1:1200086-1200105 Msa1004030:intron 30.0%
TTGCTAAATGAAGAATTGGA+GGG + chr7_1:1200087-1200106 Msa1004030:intron 30.0%
CATTGAGATTATGAAAAGAG+TGG + chr7_1:1200293-1200312 Msa1004030:intron 30.0%
TTGAGATTATGAAAAGAGTG+GGG + chr7_1:1200295-1200314 Msa1004030:intron 30.0%
! GATTAGTCATTTGCAAAATG+TGG + chr7_1:1200321-1200340 Msa1004030:intron 30.0%
! CCATTTTCAAAACAAACCTT+GGG - chr7_1:1200415-1200434 None:intergenic 30.0%
! ACCATTTTCAAAACAAACCT+TGG - chr7_1:1200416-1200435 None:intergenic 30.0%
GCATGTTTAGATGTATGTTT+AGG - chr7_1:1200519-1200538 None:intergenic 30.0%
!!! CTTTTAATTTCTTGGCAAAG+AGG - chr7_1:1200653-1200672 None:intergenic 30.0%
! TGCCAAGAAATTAAAAGCAT+AGG + chr7_1:1200656-1200675 Msa1004030:intron 30.0%
AGACACTATAACATAAAGGA+TGG + chr7_1:1200844-1200863 Msa1004030:intron 30.0%
TGGAGAACAAACCAAAATAA+AGG + chr7_1:1200864-1200883 Msa1004030:intron 30.0%
!! CACTCATATTGCCTTTATTT+TGG - chr7_1:1200878-1200897 None:intergenic 30.0%
TGATTAAAATATGGGGGTTA+GGG - chr7_1:1200948-1200967 None:intergenic 30.0%
TTGATTAAAATATGGGGGTT+AGG - chr7_1:1200949-1200968 None:intergenic 30.0%
CCTCATGGTTAAAATTGAAA+TGG - chr7_1:1200983-1201002 None:intergenic 30.0%
!! CCATTTCAATTTTAACCATG+AGG + chr7_1:1200980-1200999 Msa1004030:intron 30.0%
TACATATGCTCTTGAAATTG+TGG - chr7_1:1201139-1201158 None:intergenic 30.0%
! TTTCAAGAGCATATGTATCA+TGG + chr7_1:1201142-1201161 Msa1004030:intron 30.0%
!! TTGATGTTTTTGTGGATACT+TGG - chr7_1:1201452-1201471 None:intergenic 30.0%
!! TGCTTTTCTTGATGTTTTTG+TGG - chr7_1:1201460-1201479 None:intergenic 30.0%
!! AAAACATCAAGAAAAGCACT+AGG + chr7_1:1201462-1201481 Msa1004030:intron 30.0%
!!! AAACATTTTTGGTGAAACAG+AGG + chr7_1:1201506-1201525 Msa1004030:intron 30.0%
TAAACATGCTTATATAAGGG+GGG - chr7_1:1201758-1201777 None:intergenic 30.0%
! TTAAGTTTTCAAACTCAGGA+AGG - chr7_1:1202012-1202031 None:intergenic 30.0%
!! GTTTTCTTGTGATGATGATT+CGG + chr7_1:1202581-1202600 Msa1004030:intron 30.0%
!! AAGTGGACTGAAATGTAATT+TGG + chr7_1:1202987-1203006 Msa1004030:intron 30.0%
! AAGGACTAACATGCAATTTT+TGG + chr7_1:1203090-1203109 Msa1004030:intron 30.0%
!! GTCCGTTTTGTGTTTTTTAT+TGG - chr7_1:1203190-1203209 None:intergenic 30.0%
!! CTCAGATGCCAATTTTAAAA+TGG + chr7_1:1203317-1203336 Msa1004030:intron 30.0%
! ATGACTTCAAATGCAACTTT+TGG + chr7_1:1203472-1203491 Msa1004030:intron 30.0%
!! TTCAAATGCAACTTTTGGAA+AGG + chr7_1:1203477-1203496 Msa1004030:intron 30.0%
!! TCAAATGCAACTTTTGGAAA+GGG + chr7_1:1203478-1203497 Msa1004030:intron 30.0%
TTTGCAAAATTCACATGCAA+GGG - chr7_1:1203608-1203627 None:intergenic 30.0%
AATGACTTATGATGCAAGAA+AGG + chr7_1:1203679-1203698 Msa1004030:intron 30.0%
! GTAGTGTTATACCCTAATTT+TGG - chr7_1:1203730-1203749 None:intergenic 30.0%
ACTACATATTACTAGTCATC+TGG + chr7_1:1203745-1203764 Msa1004030:intron 30.0%
TTTCTGGACCACAAATAAAT+TGG + chr7_1:1203975-1203994 Msa1004030:CDS 30.0%
TTTACCCTCCAATTTATTTG+TGG - chr7_1:1203986-1204005 None:intergenic 30.0%
!!! CAACTTTTTTCCAACACATT+TGG - chr7_1:1204078-1204097 None:intergenic 30.0%
AAAGACATCAATGAAATTGC+CGG + chr7_1:1204488-1204507 Msa1004030:CDS 30.0%
GGTGAATCATTCAATCTTAT+AGG - chr7_1:1204533-1204552 None:intergenic 30.0%
AATGTTATGGATATGAATGC+TGG + chr7_1:1204683-1204702 Msa1004030:CDS 30.0%
CAATGGTGAAATATCCAATT+TGG + chr7_1:1204726-1204745 Msa1004030:CDS 30.0%
ACAACATTCATAACCCAAAT+TGG - chr7_1:1204743-1204762 None:intergenic 30.0%
!!! TTGTTGCTTTTTGCATCAAA+TGG - chr7_1:1204767-1204786 None:intergenic 30.0%
TCTCGGATAACTTATGAAAA+CGG - chr7_1:1204985-1205004 None:intergenic 30.0%
TTTAGGAGAGCTTAAAGAAA+CGG - chr7_1:1205054-1205073 None:intergenic 30.0%
TGTCAATTAATCACAATCGT+TGG + chr7_1:1205171-1205190 Msa1004030:intron 30.0%
TATTCTAAGCTCTCTTCTTA+TGG + chr7_1:1205344-1205363 Msa1004030:intron 30.0%
! TCTGTTGTGAGCAAATATTT+TGG + chr7_1:1205401-1205420 Msa1004030:intron 30.0%
!! ACTTTTTCTTCCTATATGCT+TGG + chr7_1:1205523-1205542 Msa1004030:intron 30.0%
!!! GATTTTGAAACCAAGCATAT+AGG - chr7_1:1205536-1205555 None:intergenic 30.0%
AAAGCGACACTCATTTAAAA+CGG - chr7_1:1205576-1205595 None:intergenic 30.0%
AATTCTGACACATCAGATTA+AGG + chr7_1:1206019-1206038 Msa1004030:intron 30.0%
ATTCTGACACATCAGATTAA+GGG + chr7_1:1206020-1206039 Msa1004030:intron 30.0%
GTCCAAAATTAGGGTATAAC+AGG + chr7_1:1198244-1198263 Msa1004030:five_prime_UTR 35.0%
! CACCTGTTATACCCTAATTT+TGG - chr7_1:1198249-1198268 None:intergenic 35.0%
ACAAGAACAGTAGAGAAAAG+TGG - chr7_1:1198404-1198423 None:intergenic 35.0%
TTCTCTACTGTTCTTGTTCT+TGG + chr7_1:1198407-1198426 Msa1004030:CDS 35.0%
TCTCTACTGTTCTTGTTCTT+GGG + chr7_1:1198408-1198427 Msa1004030:CDS 35.0%
GTTAGAACAGTTCTTGATGT+TGG + chr7_1:1198468-1198487 Msa1004030:CDS 35.0%
!!! CAGTGTTTTAAAAACCAGAC+TGG + chr7_1:1198656-1198675 Msa1004030:intron 35.0%
!! TTTTAAAAACCAGACTGGAC+TGG + chr7_1:1198661-1198680 Msa1004030:intron 35.0%
AATACAAAAGGTAAGAACCG+TGG - chr7_1:1198747-1198766 None:intergenic 35.0%
CAGCTCAGAACTTTAATTCA+TGG - chr7_1:1198829-1198848 None:intergenic 35.0%
!! CATGAATTAAAGTTCTGAGC+TGG + chr7_1:1198827-1198846 Msa1004030:intron 35.0%
! GATTTTAGATGTCTTCGCAT+TGG + chr7_1:1198880-1198899 Msa1004030:intron 35.0%
ACACCTTCAACATGAAACAT+TGG + chr7_1:1199438-1199457 Msa1004030:intron 35.0%
GTACCAATGTTTCATGTTGA+AGG - chr7_1:1199444-1199463 None:intergenic 35.0%
!!! CTTTTTCAATATGACGTAGC+AGG - chr7_1:1199477-1199496 None:intergenic 35.0%
!! CGTCATATTGAAAAAGTGTC+CGG + chr7_1:1199481-1199500 Msa1004030:intron 35.0%
! CAATGACACATTTTTGACAC+CGG - chr7_1:1199503-1199522 None:intergenic 35.0%
! TCTATTTTCTCAAAGGGTTG+GGG + chr7_1:1199565-1199584 Msa1004030:intron 35.0%
!! TTTTTGAAAGAGAACTACGG+TGG - chr7_1:1200195-1200214 None:intergenic 35.0%
TTTGAAGAATGGAGATTGAG+AGG + chr7_1:1200261-1200280 Msa1004030:intron 35.0%
!!! CCCAAGGTTTGTTTTGAAAA+TGG + chr7_1:1200412-1200431 Msa1004030:intron 35.0%
CATACCCTAGATACATTCTA+TGG + chr7_1:1200627-1200646 Msa1004030:intron 35.0%
GAGATGAATATGGGATGAAA+TGG + chr7_1:1200743-1200762 Msa1004030:intron 35.0%
GATTAAAATATGGGGGTTAG+GGG - chr7_1:1200947-1200966 None:intergenic 35.0%
! CATTGGTATTGTCACTTGTT+TGG - chr7_1:1201243-1201262 None:intergenic 35.0%
! ATGCTTGAGACTTGTTTCTT+GGG - chr7_1:1201302-1201321 None:intergenic 35.0%
! ACAGAGGTGCAAATACTAAA+AGG + chr7_1:1201522-1201541 Msa1004030:intron 35.0%
TCATATAGCACAAAACAAGC+AGG + chr7_1:1201551-1201570 Msa1004030:intron 35.0%
CATATAGCACAAAACAAGCA+GGG + chr7_1:1201552-1201571 Msa1004030:intron 35.0%
ATATAGCACAAAACAAGCAG+GGG + chr7_1:1201553-1201572 Msa1004030:intron 35.0%
AGTGAGAAGAATGATCAAAC+CGG - chr7_1:1201783-1201802 None:intergenic 35.0%
ATGAAGATGTAGAGAGAAGA+GGG - chr7_1:1201844-1201863 None:intergenic 35.0%
ATCTTCAAACTCATGCTTTC+TGG + chr7_1:1201862-1201881 Msa1004030:intron 35.0%
!! CGGTTTAAGTTTTCAAACTC+AGG - chr7_1:1202016-1202035 None:intergenic 35.0%
TGAGAAATAACGGTGAGTTT+GGG + chr7_1:1202190-1202209 Msa1004030:intron 35.0%
AACTTACCAAAAGATTTGCG+TGG - chr7_1:1202253-1202272 None:intergenic 35.0%
!!! GAAGAACGCCGATTTATTTT+CGG - chr7_1:1202283-1202302 None:intergenic 35.0%
TCGAAGAACTAGAATCAAAC+CGG - chr7_1:1202319-1202338 None:intergenic 35.0%
!!! CGTTTGTTTTTGGTGAATTC+TGG + chr7_1:1202547-1202566 Msa1004030:intron 35.0%
!!! TTTTTGGTGAATTCTGGAAC+TGG + chr7_1:1202553-1202572 Msa1004030:intron 35.0%
TAGAATCCTAACCTAGATGA+TGG + chr7_1:1202605-1202624 Msa1004030:intron 35.0%
!! CTAACCTAGATGATGGAATT+GGG + chr7_1:1202612-1202631 Msa1004030:intron 35.0%
!! TAACCTAGATGATGGAATTG+GGG + chr7_1:1202613-1202632 Msa1004030:intron 35.0%
! AGTGATCGGAAAAGTTTGTT+GGG + chr7_1:1202643-1202662 Msa1004030:intron 35.0%
! ATGATGTGTCACTGGATTAT+TGG + chr7_1:1202721-1202740 Msa1004030:intron 35.0%
! TGATGTGTCACTGGATTATT+GGG + chr7_1:1202722-1202741 Msa1004030:intron 35.0%
! TTTGCTGGATTTGAGACTTA+AGG + chr7_1:1202885-1202904 Msa1004030:intron 35.0%
! TTGCTGGATTTGAGACTTAA+GGG + chr7_1:1202886-1202905 Msa1004030:intron 35.0%
!!! CATGCAATTTTTGGAACCTT+AGG + chr7_1:1203099-1203118 Msa1004030:intron 35.0%
GGTCATTTCACATGAAGTTT+CGG - chr7_1:1203263-1203282 None:intergenic 35.0%
TGTCTCTGAGTCTTTCAAAT+TGG - chr7_1:1203380-1203399 None:intergenic 35.0%
AAAAGACTAAAATGCCCCTA+GGG + chr7_1:1203433-1203452 Msa1004030:intron 35.0%
!! TTTGGAAAGGGTTTTGACAT+AGG + chr7_1:1203490-1203509 Msa1004030:intron 35.0%
GACTGAGAGAAAATTGACAT+AGG + chr7_1:1203568-1203587 Msa1004030:intron 35.0%
GTTTGCAAAATTCACATGCA+AGG - chr7_1:1203609-1203628 None:intergenic 35.0%
TATACCTAAGAGAGATTGAC+AGG + chr7_1:1203924-1203943 Msa1004030:CDS 35.0%
AAATCCTGTCAATCTCTCTT+AGG - chr7_1:1203931-1203950 None:intergenic 35.0%
TGGACCACAAATAAATTGGA+GGG + chr7_1:1203979-1203998 Msa1004030:CDS 35.0%
!! AGAGTCAAAAGTGTTGGAAA+AGG + chr7_1:1204024-1204043 Msa1004030:CDS 35.0%
AAAGGAACAGAACAGTTTAG+AGG + chr7_1:1204042-1204061 Msa1004030:CDS 35.0%
AACTTGCAATCCAAATGTGT+TGG + chr7_1:1204065-1204084 Msa1004030:CDS 35.0%
TGTTGGAAAAAAGTTGCTGA+GGG + chr7_1:1204082-1204101 Msa1004030:CDS 35.0%
TCAGATGAACTGCAAAACTT+TGG - chr7_1:1204181-1204200 None:intergenic 35.0%
! TGCATTTTTCTGTTCTGCTA+TGG + chr7_1:1204324-1204343 Msa1004030:intron 35.0%
AAAGCTATGAACCATTGAAC+AGG + chr7_1:1204423-1204442 Msa1004030:intron 35.0%
TCATTGATGTCTTTCACTTC+TGG - chr7_1:1204482-1204501 None:intergenic 35.0%
! TGATTCTCTTTTCTCAACCT+TGG - chr7_1:1204557-1204576 None:intergenic 35.0%
GATGCAAAAAGCAACAATCT+TGG + chr7_1:1204770-1204789 Msa1004030:CDS 35.0%
CTTGGCATTATCTATGAAAG+AGG + chr7_1:1204788-1204807 Msa1004030:CDS 35.0%
AATCCATGTAAGTTCCTATG+AGG - chr7_1:1204814-1204833 None:intergenic 35.0%
TCATAGGAACTTACATGGAT+TGG + chr7_1:1204813-1204832 Msa1004030:CDS 35.0%
CTTATTTCCATAAGCTCTCT+CGG - chr7_1:1205002-1205021 None:intergenic 35.0%
AAACATCTGTGACACTGTTT+AGG - chr7_1:1205071-1205090 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr7_1:1205675-1205694 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr7_1:1205679-1205698 None:intergenic 35.0%
!!! TACTCCCTCCGTTTTAAAAT+GGG - chr7_1:1205821-1205840 None:intergenic 35.0%
!!! ATACTCCCTCCGTTTTAAAA+TGG - chr7_1:1205822-1205841 None:intergenic 35.0%
! TATATGTTGCTGTTGGAACT+TGG + chr7_1:1205839-1205858 Msa1004030:intron 35.0%
TACCATTCCACAAATGACAA+TGG + chr7_1:1205951-1205970 Msa1004030:intron 35.0%
TTAAAGTCAGTGTTCATGCA+TGG - chr7_1:1206468-1206487 None:intergenic 35.0%
GAAGCTTCTTCCTGTGAATT+TGG + chr7_1:1198434-1198453 Msa1004030:CDS 40.0%
! TGTGAATTTGGAGTCTGGAA+GGG + chr7_1:1198446-1198465 Msa1004030:CDS 40.0%
ACAGTTCTTGATGTTGGATG+TGG + chr7_1:1198474-1198493 Msa1004030:CDS 40.0%
CAGTTCTTGATGTTGGATGT+GGG + chr7_1:1198475-1198494 Msa1004030:CDS 40.0%
AGTTCTTGATGTTGGATGTG+GGG + chr7_1:1198476-1198495 Msa1004030:CDS 40.0%
AATCCGCAATTGAGATGCAT+CGG + chr7_1:1198916-1198935 Msa1004030:intron 40.0%
TGATTGAAGGTTGCAAGCTT+TGG + chr7_1:1199001-1199020 Msa1004030:intron 40.0%
TGAGCATCATGTTCATCACT+TGG - chr7_1:1199070-1199089 None:intergenic 40.0%
GTGATGTTTGCACTTGAAAG+AGG + chr7_1:1199091-1199110 Msa1004030:CDS 40.0%
! TTGGAGTATTCAGCACTCAT+AGG + chr7_1:1199128-1199147 Msa1004030:CDS 40.0%
AGTTACCATTAGCAGTCCAA+GGG - chr7_1:1199207-1199226 None:intergenic 40.0%
AAGTTACCATTAGCAGTCCA+AGG - chr7_1:1199208-1199227 None:intergenic 40.0%
TGTCGAATACCAACATGTGT+CGG + chr7_1:1199406-1199425 Msa1004030:intron 40.0%
! TTTCATGTTGAAGGTGTGTC+TGG - chr7_1:1199435-1199454 None:intergenic 40.0%
AACATGTAGCATCTACACCA+TGG - chr7_1:1199821-1199840 None:intergenic 40.0%
! TGGAGGGAGAAGAATGTTTT+TGG + chr7_1:1200103-1200122 Msa1004030:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG - chr7_1:1200176-1200195 None:intergenic 40.0%
! GGTGGATTTGATCCCTTAAA+CGG - chr7_1:1200177-1200196 None:intergenic 40.0%
GATTATGAAAAGAGTGGGGT+TGG + chr7_1:1200299-1200318 Msa1004030:intron 40.0%
!! TCAATGGGATTTTGATCCCA+AGG + chr7_1:1200396-1200415 Msa1004030:intron 40.0%
GAGGCCATAGAATGTATCTA+GGG - chr7_1:1200634-1200653 None:intergenic 40.0%
AGAGGCCATAGAATGTATCT+AGG - chr7_1:1200635-1200654 None:intergenic 40.0%
!!! ATGTGTTGGCTTTGCTTTTG+TGG - chr7_1:1200922-1200941 None:intergenic 40.0%
ATGCTTCTCTCTAATCCTCA+TGG - chr7_1:1200998-1201017 None:intergenic 40.0%
! GATGCTTGAGACTTGTTTCT+TGG - chr7_1:1201303-1201322 None:intergenic 40.0%
CGAAATCCAGTCAAAGAAAG+AGG + chr7_1:1201576-1201595 Msa1004030:intron 40.0%
GATGAAGATGTAGAGAGAAG+AGG - chr7_1:1201845-1201864 None:intergenic 40.0%
TTAGGGTTTCGAACTGTTTC+AGG + chr7_1:1202080-1202099 Msa1004030:intron 40.0%
CTGAGAAATAACGGTGAGTT+TGG + chr7_1:1202189-1202208 Msa1004030:intron 40.0%
GAGAAATAACGGTGAGTTTG+GGG + chr7_1:1202191-1202210 Msa1004030:intron 40.0%
! GAAGATCCACGCAAATCTTT+TGG + chr7_1:1202244-1202263 Msa1004030:intron 40.0%
TTCTTCCTTCTCTTCTTCAC+CGG + chr7_1:1202297-1202316 Msa1004030:intron 40.0%
AGCTCACACTTGAATTGCAA+GGG + chr7_1:1202406-1202425 Msa1004030:intron 40.0%
CACAGATTCAGTACGAAGAA+AGG - chr7_1:1202501-1202520 None:intergenic 40.0%
CTTTCTTCGTACTGAATCTG+TGG + chr7_1:1202499-1202518 Msa1004030:intron 40.0%
!! GTGAATTCTGGAACTGGTTA+GGG + chr7_1:1202559-1202578 Msa1004030:intron 40.0%
CCAATTCCATCATCTAGGTT+AGG - chr7_1:1202614-1202633 None:intergenic 40.0%
!! CCTAACCTAGATGATGGAAT+TGG + chr7_1:1202611-1202630 Msa1004030:intron 40.0%
CAGTGATCGGAAAAGTTTGT+TGG + chr7_1:1202642-1202661 Msa1004030:intron 40.0%
!! GTGATCGGAAAAGTTTGTTG+GGG + chr7_1:1202644-1202663 Msa1004030:intron 40.0%
! GTTTGTTGGGGATTCTGTTA+CGG + chr7_1:1202656-1202675 Msa1004030:intron 40.0%
! CACTGTGTTTTGTGATGAGT+TGG + chr7_1:1202696-1202715 Msa1004030:intron 40.0%
AGTTGGTTATGATGTGTCAC+TGG + chr7_1:1202713-1202732 Msa1004030:intron 40.0%
! GATGTGTCACTGGATTATTG+GGG + chr7_1:1202723-1202742 Msa1004030:intron 40.0%
TCAGCTATAAAGCCAACTCA+TGG - chr7_1:1202775-1202794 None:intergenic 40.0%
GCTTTATAGCTGACAAGTGT+GGG + chr7_1:1202782-1202801 Msa1004030:intron 40.0%
!! AAGCTTTTAAGTCCAAGCAC+AGG - chr7_1:1202861-1202880 None:intergenic 40.0%
GTGCTTGGACTTAAAAGCTT+CGG + chr7_1:1202861-1202880 Msa1004030:intron 40.0%
! AAGGGCCCTTTTTGCAATTT+TGG + chr7_1:1202904-1202923 Msa1004030:intron 40.0%
GGACTGACCTGCAATATAAA+AGG + chr7_1:1202936-1202955 Msa1004030:intron 40.0%
GACCTGCAATATAAAAGGAC+TGG + chr7_1:1202941-1202960 Msa1004030:intron 40.0%
! GTCCAGTCCTTTTATATTGC+AGG - chr7_1:1202946-1202965 None:intergenic 40.0%
!! AACGGACTAAAACGAACCAA+CGG + chr7_1:1203203-1203222 Msa1004030:intron 40.0%
AAGTACCTCATTTAAGCCGT+TGG - chr7_1:1203222-1203241 None:intergenic 40.0%
! AATGGATTCTTGGCAGAGAA+TGG + chr7_1:1203335-1203354 Msa1004030:intron 40.0%
GAAAAGACTAAAATGCCCCT+AGG + chr7_1:1203432-1203451 Msa1004030:intron 40.0%
AAAGACTAAAATGCCCCTAG+GGG + chr7_1:1203434-1203453 Msa1004030:intron 40.0%
! TTAAGTCAGTTTTGCCCCTA+GGG - chr7_1:1203451-1203470 None:intergenic 40.0%
! TTTAAGTCAGTTTTGCCCCT+AGG - chr7_1:1203452-1203471 None:intergenic 40.0%
!! GAAAGGGTTTTGACATAGGA+TGG + chr7_1:1203494-1203513 Msa1004030:intron 40.0%
TTTGACATAGGATGGAAGCA+AGG + chr7_1:1203502-1203521 Msa1004030:intron 40.0%
CTGGACCACAAATAAATTGG+AGG + chr7_1:1203978-1203997 Msa1004030:CDS 40.0%
GGAGGGTAAACTATAAAGCA+TGG + chr7_1:1203996-1204015 Msa1004030:CDS 40.0%
! GCAAACAGAGTCAAAAGTGT+TGG + chr7_1:1204018-1204037 Msa1004030:CDS 40.0%
GTGTTGGAAAAAAGTTGCTG+AGG + chr7_1:1204081-1204100 Msa1004030:CDS 40.0%
AGGGAGGACAAATTGCTATA+TGG + chr7_1:1204101-1204120 Msa1004030:CDS 40.0%
! ATGTCTTTCACTTCTGGAAG+AGG - chr7_1:1204476-1204495 None:intergenic 40.0%
GATTGAATGATTCACCACCA+AGG + chr7_1:1204537-1204556 Msa1004030:CDS 40.0%
! TTCTCTTTTCTCAACCTTGG+TGG - chr7_1:1204554-1204573 None:intergenic 40.0%
ATGCTCAAATCACTCTCATC+TGG + chr7_1:1204650-1204669 Msa1004030:CDS 40.0%
!! ATGGATATGAATGCTGGCTT+TGG + chr7_1:1204689-1204708 Msa1004030:CDS 40.0%
ATCTATGAAAGAGGCCTCAT+AGG + chr7_1:1204797-1204816 Msa1004030:CDS 40.0%
AAGTTATCCGAGAGAGCTTA+TGG + chr7_1:1204992-1205011 Msa1004030:three_prime_UTR 40.0%
! CGACACTCATTTAAAACGGA+TGG - chr7_1:1205572-1205591 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr7_1:1205676-1205695 None:intergenic 40.0%
!!! TGACACCCATTTTAAAACGG+AGG + chr7_1:1205813-1205832 Msa1004030:intron 40.0%
!!! GACACCCATTTTAAAACGGA+GGG + chr7_1:1205814-1205833 Msa1004030:intron 40.0%
! TGCCATTGTCATTTGTGGAA+TGG - chr7_1:1205956-1205975 None:intergenic 40.0%
! AAACGTGCCATTGTCATTTG+TGG - chr7_1:1205961-1205980 None:intergenic 40.0%
CTGTACAAGTACAACATGCT+TGG + chr7_1:1206385-1206404 Msa1004030:three_prime_UTR 40.0%
! CTTCCTGTGAATTTGGAGTC+TGG + chr7_1:1198441-1198460 Msa1004030:CDS 45.0%
CTTCCAGACTCCAAATTCAC+AGG - chr7_1:1198447-1198466 None:intergenic 45.0%
! CTGTGAATTTGGAGTCTGGA+AGG + chr7_1:1198445-1198464 Msa1004030:CDS 45.0%
GTAGTCTGATGTGACTGATG+CGG + chr7_1:1198579-1198598 Msa1004030:intron 45.0%
CCAATTGACCGTTTGAACCA+CGG + chr7_1:1198727-1198746 Msa1004030:intron 45.0%
GGTAAGAACCGTGGTTCAAA+CGG - chr7_1:1198738-1198757 None:intergenic 45.0%
!! AGCTGGTTTGATTTCCAGCT+TGG + chr7_1:1198844-1198863 Msa1004030:intron 45.0%
GCATCTCAATTGCGGATTTG+TGG - chr7_1:1198914-1198933 None:intergenic 45.0%
CTGAATACTCCAAGCATAGC+AGG - chr7_1:1199121-1199140 None:intergenic 45.0%
GTGATTCGTTGCTACGAAAC+AGG - chr7_1:1199301-1199320 None:intergenic 45.0%
! GTAACCACATCATCGGTGTT+TGG + chr7_1:1199383-1199402 Msa1004030:intron 45.0%
CTGACACGATATGTCGACAA+CGG - chr7_1:1199778-1199797 None:intergenic 45.0%
TATCGTGTCAGTATCGTGTC+TGG + chr7_1:1199787-1199806 Msa1004030:intron 45.0%
CGTGTCTGGTATTTGTACCA+TGG + chr7_1:1199801-1199820 Msa1004030:intron 45.0%
AGCAAAACCCTTGAGAATCG+AGG + chr7_1:1199930-1199949 Msa1004030:intron 45.0%
GCGCGCGTAGAAATTAAAGA+CGG - chr7_1:1200022-1200041 None:intergenic 45.0%
TTGCCTACGTACCCGTTTAA+GGG + chr7_1:1200162-1200181 Msa1004030:intron 45.0%
GACCCAAACCCTAGATCAAA+CGG + chr7_1:1201666-1201685 Msa1004030:intron 45.0%
! CACCGTTTGATCTAGGGTTT+GGG - chr7_1:1201671-1201690 None:intergenic 45.0%
CTTCTCCACCGTTTGATCTA+GGG - chr7_1:1201677-1201696 None:intergenic 45.0%
TATATAAGGGGGGTGAACCA+AGG - chr7_1:1201748-1201767 None:intergenic 45.0%
AACACCGATGAAGATTCCGA+CGG + chr7_1:1201898-1201917 Msa1004030:intron 45.0%
! GAGTTTGGGGTTTACCTCTT+TGG + chr7_1:1202204-1202223 Msa1004030:intron 45.0%
GGGTTTACCTCTTTGGATTC+TGG + chr7_1:1202211-1202230 Msa1004030:intron 45.0%
CGAATCTCCAGAATCCAAAG+AGG - chr7_1:1202221-1202240 None:intergenic 45.0%
TCAAACCGGTGAAGAAGAGA+AGG - chr7_1:1202305-1202324 None:intergenic 45.0%
TGGAGAGTGAGAAGAAGAAG+AGG - chr7_1:1202343-1202362 None:intergenic 45.0%
GAGCTCACACTTGAATTGCA+AGG + chr7_1:1202405-1202424 Msa1004030:intron 45.0%
TGAATTGCAAGGGATTTCGC+TGG + chr7_1:1202416-1202435 Msa1004030:intron 45.0%
CGAACTGCAACAAGCATCAA+AGG - chr7_1:1202442-1202461 None:intergenic 45.0%
!! GGTGAATTCTGGAACTGGTT+AGG + chr7_1:1202558-1202577 Msa1004030:intron 45.0%
ATTGGGGTGGTTACAGTGAT+CGG + chr7_1:1202629-1202648 Msa1004030:intron 45.0%
CTCTGACTTTGACCATGAGT+TGG + chr7_1:1202760-1202779 Msa1004030:intron 45.0%
! GGCTTTATAGCTGACAAGTG+TGG + chr7_1:1202781-1202800 Msa1004030:intron 45.0%
ACGAATCAGGAATTGCCATG+TGG + chr7_1:1202811-1202830 Msa1004030:intron 45.0%
CACAGGTGTCAAGTTCCTAA+TGG - chr7_1:1202844-1202863 None:intergenic 45.0%
CTTAAAAGCTTCGGCTTTGC+TGG + chr7_1:1202870-1202889 Msa1004030:intron 45.0%
ACGAACCAACGGCTTAAATG+AGG + chr7_1:1203214-1203233 Msa1004030:intron 45.0%
TGAAATGACCAAAATGCCCC+TGG + chr7_1:1203273-1203292 Msa1004030:intron 45.0%
GAAATGACCAAAATGCCCCT+GGG + chr7_1:1203274-1203293 Msa1004030:intron 45.0%
AAATGACCAAAATGCCCCTG+GGG + chr7_1:1203275-1203294 Msa1004030:intron 45.0%
!! TTTCAGTCGTTTTAGCCCCA+GGG - chr7_1:1203293-1203312 None:intergenic 45.0%
!! TTTTCAGTCGTTTTAGCCCC+AGG - chr7_1:1203294-1203313 None:intergenic 45.0%
! TAAGTCAGTTTTGCCCCTAG+GGG - chr7_1:1203450-1203469 None:intergenic 45.0%
! ATTGACAGGATTTTGCGTCC+TGG + chr7_1:1203938-1203957 Msa1004030:CDS 45.0%
!!! TTTTGCGTCCTGGTGGATTT+TGG + chr7_1:1203948-1203967 Msa1004030:CDS 45.0%
!!! TTTGCGTCCTGGTGGATTTT+GGG + chr7_1:1203949-1203968 Msa1004030:CDS 45.0%
!! GAAAGTACCCAAAATCCACC+AGG - chr7_1:1203959-1203978 None:intergenic 45.0%
!! GGTGGATTTTGGGTACTTTC+TGG + chr7_1:1203959-1203978 Msa1004030:CDS 45.0%
TGGAAAAAAGTTGCTGAGGG+AGG + chr7_1:1204085-1204104 Msa1004030:CDS 45.0%
AGTTCATCTGACTCTGATGC+TGG + chr7_1:1204190-1204209 Msa1004030:CDS 45.0%
GACATCAATGAAATTGCCGG+CGG + chr7_1:1204491-1204510 Msa1004030:CDS 45.0%
!! GATATGAATGCTGGCTTTGG+TGG + chr7_1:1204692-1204711 Msa1004030:CDS 45.0%
AGGCCTCATAGGAACTTACA+TGG + chr7_1:1204808-1204827 Msa1004030:CDS 45.0%
! GAGGGAGTATATGTTGCTGT+TGG + chr7_1:1205832-1205851 Msa1004030:intron 45.0%
!! AAAAACCAGACTGGACTGGC+TGG + chr7_1:1198665-1198684 Msa1004030:intron 50.0%
TCGAGGATTGTCTGTTTCGC+TGG + chr7_1:1198693-1198712 Msa1004030:intron 50.0%
GGATTGTCTGTTTCGCTGGT+TGG + chr7_1:1198697-1198716 Msa1004030:intron 50.0%
CCGTGGTTCAAACGGTCAAT+TGG - chr7_1:1198730-1198749 None:intergenic 50.0%
CAGCCGATGCATCTCAATTG+CGG - chr7_1:1198922-1198941 None:intergenic 50.0%
AGAGGACTTCCTGCTATGCT+TGG + chr7_1:1199109-1199128 Msa1004030:CDS 50.0%
CATTAGCAGTCCAAGGGACA+AGG - chr7_1:1199201-1199220 None:intergenic 50.0%
CTTGTCCCTTGGACTGCTAA+TGG + chr7_1:1199199-1199218 Msa1004030:CDS 50.0%
CACGACACCGATATTGACAC+TGG + chr7_1:1199330-1199349 Msa1004030:intron 50.0%
GACACCAAACACCGATGATG+TGG - chr7_1:1199390-1199409 None:intergenic 50.0%
GTCTGGTATCCGACACATGT+TGG - chr7_1:1199418-1199437 None:intergenic 50.0%
AGATTCCTTAACCAGTGCCC+CGG - chr7_1:1199609-1199628 None:intergenic 50.0%
! TTGGTGCTTAACCAATGCCC+CGG + chr7_1:1199716-1199735 Msa1004030:intron 50.0%
AGAATGTTAACCAGTGCCCC+CGG - chr7_1:1199738-1199757 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG + chr7_1:1199935-1199954 Msa1004030:intron 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG + chr7_1:1199953-1199972 Msa1004030:intron 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG + chr7_1:1199958-1199977 Msa1004030:intron 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG + chr7_1:1199965-1199984 Msa1004030:intron 50.0%
CTTAAACGGGTACGTAGGCA+AGG - chr7_1:1200163-1200182 None:intergenic 50.0%
CTTGCCTACGTACCCGTTTA+AGG + chr7_1:1200161-1200180 Msa1004030:intron 50.0%
GATCCCTTAAACGGGTACGT+AGG - chr7_1:1200168-1200187 None:intergenic 50.0%
AGTGGTGTGTGTGCATGTGT+CGG + chr7_1:1200560-1200579 Msa1004030:intron 50.0%
! CCACCGTTTGATCTAGGGTT+TGG - chr7_1:1201672-1201691 None:intergenic 50.0%
CCAAACCCTAGATCAAACGG+TGG + chr7_1:1201669-1201688 Msa1004030:intron 50.0%
CCTTCTCCACCGTTTGATCT+AGG - chr7_1:1201678-1201697 None:intergenic 50.0%
CCTAGATCAAACGGTGGAGA+AGG + chr7_1:1201675-1201694 Msa1004030:intron 50.0%
AGATCAAACGGTGGAGAAGG+AGG + chr7_1:1201678-1201697 Msa1004030:intron 50.0%
!! AACCGGTTTGGAGATGAACC+AGG + chr7_1:1201705-1201724 Msa1004030:intron 50.0%
AGCCTGGTTCATCTCCAAAC+CGG - chr7_1:1201710-1201729 None:intergenic 50.0%
AGAGGGAGCTTCTCTCTCTA+AGG - chr7_1:1201827-1201846 None:intergenic 50.0%
ACCACCGTCGGAATCTTCAT+CGG - chr7_1:1201905-1201924 None:intergenic 50.0%
TGAAGATTCCGACGGTGGTT+AGG + chr7_1:1201906-1201925 Msa1004030:intron 50.0%
ACAGAGGTAAGATTCCGACG+CGG - chr7_1:1201950-1201969 None:intergenic 50.0%
CCACCCCAATTCCATCATCT+AGG - chr7_1:1202619-1202638 None:intergenic 50.0%
!! CCTAGATGATGGAATTGGGG+TGG + chr7_1:1202616-1202635 Msa1004030:intron 50.0%
TGTTGGGGATTCTGTTACGG+TGG + chr7_1:1202659-1202678 Msa1004030:intron 50.0%
TAGCTGACAAGTGTGGGTGT+TGG + chr7_1:1202788-1202807 Msa1004030:intron 50.0%
CAGGAATTGCCATGTGGACT+TGG + chr7_1:1202817-1202836 Msa1004030:intron 50.0%
CCTAATGGTCCAAGTCCACA+TGG - chr7_1:1202829-1202848 None:intergenic 50.0%
CCATGTGGACTTGGACCATT+AGG + chr7_1:1202826-1202845 Msa1004030:intron 50.0%
AGGAACTTGACACCTGTGCT+TGG + chr7_1:1202846-1202865 Msa1004030:intron 50.0%
CATGAAGTTTCGGCAGAGAG+AGG - chr7_1:1203253-1203272 None:intergenic 50.0%
!!! TTTTAGCCCCAGGGGCATTT+TGG - chr7_1:1203284-1203303 None:intergenic 50.0%
!! TTCAGTCGTTTTAGCCCCAG+GGG - chr7_1:1203292-1203311 None:intergenic 50.0%
CATCTGACTCTGATGCTGGA+TGG + chr7_1:1204194-1204213 Msa1004030:CDS 50.0%
CCATTTCTCAAGAACACCGC+CGG - chr7_1:1204510-1204529 None:intergenic 50.0%
!! TGGTGGATTTGCAGCTGCAA+TGG + chr7_1:1204709-1204728 Msa1004030:CDS 50.0%
TTGAACCAGCCAGTCCAGTC+TGG - chr7_1:1198673-1198692 None:intergenic 55.0%
!! TGGACTGGCTGGTTCAATCG+AGG + chr7_1:1198676-1198695 Msa1004030:intron 55.0%
! GCTCTAGATGCCTTGTCCCT+TGG + chr7_1:1199188-1199207 Msa1004030:CDS 55.0%
! GTCTTGTTAACCAGTGCCCC+CGG + chr7_1:1199587-1199606 Msa1004030:intron 55.0%
TCTTGTTAACCAGTGCCCCC+GGG + chr7_1:1199588-1199607 Msa1004030:intron 55.0%
ATTCCTTAACCAGTGCCCCG+GGG - chr7_1:1199607-1199626 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+GGG - chr7_1:1199608-1199627 None:intergenic 55.0%
TGGTGCTTAACCAATGCCCC+GGG + chr7_1:1199717-1199736 Msa1004030:intron 55.0%
AATGTTAACCAGTGCCCCCG+GGG - chr7_1:1199736-1199755 None:intergenic 55.0%
GAATGTTAACCAGTGCCCCC+GGG - chr7_1:1199737-1199756 None:intergenic 55.0%
ACCCTTGAGAATCGAGGTCC+GGG + chr7_1:1199936-1199955 Msa1004030:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG - chr7_1:1199940-1199959 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG - chr7_1:1199957-1199976 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG + chr7_1:1199954-1199973 Msa1004030:intron 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG + chr7_1:1200572-1200591 Msa1004030:intron 55.0%
GGGGGTTAGGGGTTATGTGT+TGG - chr7_1:1200936-1200955 None:intergenic 55.0%
CCTGGGCCTCTTTCTTTGAC+TGG - chr7_1:1201585-1201604 None:intergenic 55.0%
CCAGTCAAAGAAAGAGGCCC+AGG + chr7_1:1201582-1201601 Msa1004030:intron 55.0%
CCAGAACCCACCAAGGCTTT+GGG - chr7_1:1201608-1201627 None:intergenic 55.0%
TCCAGAACCCACCAAGGCTT+TGG - chr7_1:1201609-1201628 None:intergenic 55.0%
AGGAGCCACAGGATTGATCC+AGG + chr7_1:1201643-1201662 Msa1004030:intron 55.0%
GGAGCCACAGGATTGATCCA+GGG + chr7_1:1201644-1201663 Msa1004030:intron 55.0%
! TGATCTAGGGTTTGGGTCCC+TGG - chr7_1:1201664-1201683 None:intergenic 55.0%
CAAACGGTGGAGAAGGAGGA+TGG + chr7_1:1201682-1201701 Msa1004030:intron 55.0%
GTGGAGAAGGAGGATGGAAC+CGG + chr7_1:1201688-1201707 Msa1004030:intron 55.0%
GAAGGAGGATGGAACCGGTT+TGG + chr7_1:1201693-1201712 Msa1004030:intron 55.0%
GGTTTGGAGATGAACCAGGC+TGG + chr7_1:1201709-1201728 Msa1004030:intron 55.0%
ATAAGGGGGGTGAACCAAGG+CGG - chr7_1:1201745-1201764 None:intergenic 55.0%
ACCGATGAAGATTCCGACGG+TGG + chr7_1:1201901-1201920 Msa1004030:intron 55.0%
TCCGACGGTGGTTAGGTTTC+CGG + chr7_1:1201913-1201932 Msa1004030:intron 55.0%
ACCGGAAACCTAACCACCGT+CGG - chr7_1:1201917-1201936 None:intergenic 55.0%
GGTGGTTAGGTTTCCGGTGA+CGG + chr7_1:1201919-1201938 Msa1004030:intron 55.0%
ATTCTGTTACGGTGGCGCGT+GGG + chr7_1:1202667-1202686 Msa1004030:intron 55.0%
!! GTGTGGGTGTTGGACGAATC+AGG + chr7_1:1202798-1202817 Msa1004030:intron 55.0%
! GACAGGATTTTGCGTCCTGG+TGG + chr7_1:1203941-1203960 Msa1004030:CDS 55.0%
CCGGCGGTGTTCTTGAGAAA+TGG + chr7_1:1204507-1204526 Msa1004030:CDS 55.0%
! TGACGTAGCAGGTGCTGCAG+AGG - chr7_1:1199466-1199485 None:intergenic 60.0%
CTTGTTAACCAGTGCCCCCG+GGG + chr7_1:1199589-1199608 Msa1004030:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG - chr7_1:1199606-1199625 None:intergenic 60.0%
GGTGCTTAACCAATGCCCCG+GGG + chr7_1:1199718-1199737 Msa1004030:intron 60.0%
GTGCTTAACCAATGCCCCGG+GGG + chr7_1:1199719-1199738 Msa1004030:intron 60.0%
CTCCCGGACCTCGATTCTCA+AGG - chr7_1:1199941-1199960 None:intergenic 60.0%
!! CCCAAAGCCTTGGTGGGTTC+TGG + chr7_1:1201605-1201624 Msa1004030:intron 60.0%
CTGCGATCCAGAACCCACCA+AGG - chr7_1:1201615-1201634 None:intergenic 60.0%
TCTGGATCGCAGAGAGACGC+AGG + chr7_1:1201623-1201642 Msa1004030:intron 60.0%
GGGTCCCTGGATCAATCCTG+TGG - chr7_1:1201651-1201670 None:intergenic 60.0%
CTGGTTCAGACGAACCGCCT+TGG + chr7_1:1201728-1201747 Msa1004030:intron 60.0%
GAGGTAAGATTCCGACGCGG+TGG - chr7_1:1201947-1201966 None:intergenic 60.0%
GATTCTGTTACGGTGGCGCG+TGG + chr7_1:1202666-1202685 Msa1004030:intron 60.0%
!! CCCACCAAGGCTTTGGGCCT+GGG - chr7_1:1201602-1201621 None:intergenic 65.0%
CCCAGGCCCAAAGCCTTGGT+GGG + chr7_1:1201599-1201618 Msa1004030:intron 65.0%
!! ACCCACCAAGGCTTTGGGCC+TGG - chr7_1:1201603-1201622 None:intergenic 65.0%
CAGAGAGACGCAGGAGCCAC+AGG + chr7_1:1201632-1201651 Msa1004030:intron 65.0%
GCGGTTCGTCTGAACCAGCC+TGG - chr7_1:1201726-1201745 None:intergenic 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr7_1:1199601-1199620 Msa1004030:intron 70.0%
! AACCAATGCCCCGGGGGCAC+TGG + chr7_1:1199725-1199744 Msa1004030:intron 70.0%
AACCAGTGCCCCCGGGGCAT+TGG - chr7_1:1199730-1199749 None:intergenic 70.0%
GAGGCCCAGGCCCAAAGCCT+TGG + chr7_1:1201595-1201614 Msa1004030:intron 70.0%
GCCCAGGCCCAAAGCCTTGG+TGG + chr7_1:1201598-1201617 Msa1004030:intron 70.0%
CGACGCGGTGGTTCCGTCAC+CGG - chr7_1:1201935-1201954 None:intergenic 70.0%
!! CGGTGACGGAACCACCGCGT+CGG + chr7_1:1201933-1201952 Msa1004030:intron 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr7_1:1199595-1199614 Msa1004030:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr7_1:1199600-1199619 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 1198044 1206505 1198044 ID=Msa1004030;Name=Msa1004030
chr7_1 mRNA 1198044 1206505 1198044 ID=Msa1004030-mRNA-1;Parent=Msa1004030;Name=Msa1004030-mRNA-1;_AED=0.03;_eAED=0.03;_QI=334|1|1|1|0.75|0.6|5|366|355
chr7_1 exon 1198044 1198497 1198044 ID=Msa1004030-mRNA-1:exon:545;Parent=Msa1004030-mRNA-1
chr7_1 exon 1199010 1199220 1199010 ID=Msa1004030-mRNA-1:exon:546;Parent=Msa1004030-mRNA-1
chr7_1 exon 1203918 1204215 1203918 ID=Msa1004030-mRNA-1:exon:547;Parent=Msa1004030-mRNA-1
chr7_1 exon 1204445 1205075 1204445 ID=Msa1004030-mRNA-1:exon:548;Parent=Msa1004030-mRNA-1
chr7_1 exon 1206332 1206505 1206332 ID=Msa1004030-mRNA-1:exon:549;Parent=Msa1004030-mRNA-1
chr7_1 five_prime_UTR 1198044 1198377 1198044 ID=Msa1004030-mRNA-1:five_prime_utr;Parent=Msa1004030-mRNA-1
chr7_1 CDS 1198378 1198497 1198378 ID=Msa1004030-mRNA-1:cds;Parent=Msa1004030-mRNA-1
chr7_1 CDS 1199010 1199220 1199010 ID=Msa1004030-mRNA-1:cds;Parent=Msa1004030-mRNA-1
chr7_1 CDS 1203918 1204215 1203918 ID=Msa1004030-mRNA-1:cds;Parent=Msa1004030-mRNA-1
chr7_1 CDS 1204445 1204883 1204445 ID=Msa1004030-mRNA-1:cds;Parent=Msa1004030-mRNA-1
chr7_1 three_prime_UTR 1204884 1205075 1204884 ID=Msa1004030-mRNA-1:three_prime_utr;Parent=Msa1004030-mRNA-1
chr7_1 three_prime_UTR 1206332 1206505 1206332 ID=Msa1004030-mRNA-1:three_prime_utr;Parent=Msa1004030-mRNA-1
Gene Sequence

>Msa1004030

ATGTTATTTATGGGTGATGGGCTCCACTTTTCTCTACTGTTCTTGTTCTTGGGTAAGAAGCTTCTTCCTGTGAATTTGGAGTCTGGAAGGGTTAGAACAGTTCTTGATGTTGGATGTGGGGTTGCAAGCTTTGGAGCATCTCTAACAGACTATGATATTCTGACAATGTCAATAGCACCAAGTGATGAACATGATGCTCAAGTGATGTTTGCACTTGAAAGAGGACTTCCTGCTATGCTTGGAGTATTCAGCACTCATAGGCTAACATTCCCTTCAAAATCATTTGATATGGCTCATTGCTCTAGATGCCTTGTCCCTTGGACTGCTAATGATGGACTATACCTAAGAGAGATTGACAGGATTTTGCGTCCTGGTGGATTTTGGGTACTTTCTGGACCACAAATAAATTGGAGGGTAAACTATAAAGCATGGCAAACAGAGTCAAAAGTGTTGGAAAAGGAACAGAACAGTTTAGAGGAACTTGCAATCCAAATGTGTTGGAAAAAAGTTGCTGAGGGAGGACAAATTGCTATATGGCAAAAACCAATAAATCATATAAAATGCATGCAAAAATTGAATACTTTTAGTTCTCCAAAGTTTTGCAGTTCATCTGACTCTGATGCTGGATGGTATACAAAAATGACTGCATGCATTTTTCCTCTTCCAGAAGTGAAAGACATCAATGAAATTGCCGGCGGTGTTCTTGAGAAATGGCCTATAAGATTGAATGATTCACCACCAAGGTTGAGAAAAGAGAATCATGATGTTTTCACACTCAAAACCTATAGTGAAGATAACATGATATGGAAAAAAAGAGTATCTTACTATGAAGTCATGCTCAAATCACTCTCATCTGGTAAATATAGAAATGTTATGGATATGAATGCTGGCTTTGGTGGATTTGCAGCTGCAATGGTGAAATATCCAATTTGGGTTATGAATGTTGTTCCATTTGATGCAAAAAGCAACAATCTTGGCATTATCTATGAAAGAGGCCTCATAGGAACTTACATGGATTGGTATTTATTTACTACTTTTCATCTTTACTTTCTCCTTTTTAATTTATGA
Protein sequence

>Msa1004030

MLFMGDGLHFSLLFLFLGKKLLPVNLESGRVRTVLDVGCGVASFGASLTDYDILTMSIAPSDEHDAQVMFALERGLPAMLGVFSTHRLTFPSKSFDMAHCSRCLVPWTANDGLYLREIDRILRPGGFWVLSGPQINWRVNYKAWQTESKVLEKEQNSLEELAIQMCWKKVAEGGQIAIWQKPINHIKCMQKLNTFSSPKFCSSSDSDAGWYTKMTACIFPLPEVKDINEIAGGVLEKWPIRLNDSPPRLRKENHDVFTLKTYSEDNMIWKKRVSYYEVMLKSLSSGKYRNVMDMNAGFGGFAAAMVKYPIWVMNVVPFDAKSNNLGIIYERGLIGTYMDWYLFTTFHLYFLLFNL*