AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004210 MtrunA17_Chr7g0214551 93.772 578 27 2 1 578 1 569 0.0 1105
Msa1004210 MtrunA17_Chr7g0246701 51.859 538 245 5 39 574 94 619 0.0 610
Msa1004210 MtrunA17_Chr1g0203741 50.268 559 253 5 17 557 46 597 0.0 608
Msa1004210 MtrunA17_Chr6g0472571 53.922 510 223 4 49 557 108 606 0.0 603
Msa1004210 MtrunA17_Chr8g0388881 49.815 542 260 4 33 574 85 614 0.0 597
Msa1004210 MtrunA17_Chr8g0350391 49.553 559 265 8 20 574 79 624 0.0 596
Msa1004210 MtrunA17_Chr4g0055031 50.640 547 248 7 30 575 73 598 0.0 588
Msa1004210 MtrunA17_Chr8g0361791 51.887 530 235 6 46 574 84 594 0.0 578
Msa1004210 MtrunA17_Chr5g0416991 49.533 535 249 6 41 574 79 593 0.0 558
Msa1004210 MtrunA17_Chr3g0092501 49.425 522 241 6 45 566 84 582 0.0 536
Msa1004210 MtrunA17_Chr8g0369481 46.094 512 256 8 46 553 70 565 3.87e-160 470
Msa1004210 MtrunA17_Chr5g0409411 45.577 520 269 7 34 552 60 566 1.16e-155 459
Msa1004210 MtrunA17_Chr7g0246681 42.804 542 270 12 46 578 75 585 5.54e-150 444
Msa1004210 MtrunA17_Chr8g0350351 42.639 523 263 11 43 556 85 579 1.34e-148 441
Msa1004210 MtrunA17_Chr3g0112341 41.989 543 285 13 32 566 137 657 6.56e-143 429
Msa1004210 MtrunA17_Chr1g0159741 43.536 526 263 13 54 571 150 649 1.45e-138 417
Msa1004210 MtrunA17_Chr1g0183721 38.422 583 324 13 8 576 20 581 9.73e-138 413
Msa1004210 MtrunA17_Chr3g0113981 42.998 507 252 14 54 552 174 651 1.29e-134 407
Msa1004210 MtrunA17_Chr1g0187601 42.373 531 273 13 46 566 91 598 2.10e-134 405
Msa1004210 MtrunA17_Chr1g0167381 42.004 519 268 13 46 553 92 588 6.93e-132 399
Msa1004210 MtrunA17_Chr3g0130381 40.842 546 288 12 22 553 232 756 4.22e-131 402
Msa1004210 MtrunA17_Chr5g0435751 39.292 537 278 11 36 566 115 609 1.46e-129 392
Msa1004210 MtrunA17_Chr5g0437501 40.494 526 266 15 46 552 91 588 8.31e-129 390
Msa1004210 MtrunA17_Chr3g0125511 41.154 520 265 15 50 553 228 722 4.49e-126 388
Msa1004210 MtrunA17_Chr8g0384431 39.964 548 292 14 22 553 260 786 2.84e-125 387
Msa1004210 MtrunA17_Chr8g0372471 40.351 513 271 12 51 553 383 870 1.08e-120 377
Msa1004210 MtrunA17_Chr1g0171781 37.982 545 296 12 23 553 63 579 8.82e-117 359
Msa1004210 MtrunA17_Chr1g0155141 35.714 518 286 17 46 553 199 679 2.75e-92 298
Msa1004210 MtrunA17_Chr3g0115931 33.633 556 312 16 41 565 149 678 1.41e-91 296
Msa1004210 MtrunA17_Chr5g0426281 32.337 569 300 15 37 565 137 660 1.28e-88 288
Msa1004210 MtrunA17_Chr5g0404771 46.903 226 116 2 51 274 325 548 5.70e-69 233
Msa1004210 MtrunA17_Chr4g0043121 31.818 286 182 4 42 320 82 361 3.32e-49 176
Msa1004210 MtrunA17_Chr5g0404761 35.714 266 150 9 297 553 1 254 1.14e-42 154
Msa1004210 MtrunA17_Chr4g0043131 50.394 127 59 3 434 557 40 165 1.86e-35 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004210 AT2G43200.2 56.554 534 217 6 45 577 90 609 0.0 648
Msa1004210 AT2G43200.1 56.554 534 217 6 45 577 90 609 0.0 648
Msa1004210 AT4G10440.1 50.826 545 253 5 33 574 78 610 0.0 603
Msa1004210 AT1G33170.1 50.838 537 252 4 39 574 103 628 0.0 602
Msa1004210 AT2G45750.1 51.481 540 245 6 34 568 75 602 0.0 597
Msa1004210 AT1G26850.2 52.052 536 243 5 40 574 80 602 0.0 595
Msa1004210 AT1G26850.1 52.052 536 243 5 40 574 80 602 0.0 595
Msa1004210 AT4G00750.1 50.943 530 246 5 49 575 99 617 0.0 588
Msa1004210 AT4G18030.1 48.411 535 256 7 42 574 81 597 0.0 536
Msa1004210 AT4G19120.1 46.911 518 253 10 41 552 65 566 2.41e-164 481
Msa1004210 AT4G19120.2 46.911 518 253 10 41 552 65 566 2.41e-164 481
Msa1004210 AT1G26850.3 50.577 433 205 3 40 472 80 503 1.82e-162 473
Msa1004210 AT1G31850.1 44.860 535 277 9 21 552 53 572 4.98e-162 476
Msa1004210 AT1G31850.2 44.860 535 277 9 21 552 53 572 4.98e-162 476
Msa1004210 AT1G31850.4 44.860 535 277 9 21 552 53 572 4.98e-162 476
Msa1004210 AT1G31850.3 44.860 535 277 9 21 552 53 572 4.98e-162 476
Msa1004210 AT4G00740.1 42.222 540 276 11 46 578 81 591 4.69e-150 445
Msa1004210 AT4G00740.2 42.222 540 276 11 46 578 81 591 4.69e-150 445
Msa1004210 AT5G06050.1 43.494 538 270 12 39 566 140 653 2.04e-146 438
Msa1004210 AT2G39750.1 41.959 541 278 12 36 568 167 679 1.31e-143 431
Msa1004210 AT1G77260.1 40.901 555 287 14 31 575 127 650 3.39e-140 421
Msa1004210 AT4G19120.3 46.785 451 218 10 41 485 65 499 2.94e-138 411
Msa1004210 AT1G04430.1 43.071 534 268 13 46 568 84 592 2.25e-134 405
Msa1004210 AT1G04430.3 43.071 534 268 13 46 568 84 592 2.25e-134 405
Msa1004210 AT1G04430.2 43.071 534 268 13 46 568 84 592 2.25e-134 405
Msa1004210 AT4G14360.1 42.582 519 265 14 46 553 76 572 3.35e-132 399
Msa1004210 AT4G14360.2 42.582 519 265 14 46 553 76 572 3.35e-132 399
Msa1004210 AT3G23300.2 40.926 540 286 14 46 574 79 596 3.51e-132 399
Msa1004210 AT3G23300.1 40.926 540 286 14 46 574 79 596 3.51e-132 399
Msa1004210 AT5G64030.1 42.278 518 266 13 48 553 300 796 1.32e-131 405
Msa1004210 AT2G40280.1 40.713 533 270 14 36 556 70 568 1.86e-131 397
Msa1004210 AT3G56080.1 40.945 508 268 12 55 556 114 595 3.49e-131 397
Msa1004210 AT5G14430.1 41.860 516 269 11 48 553 82 576 1.44e-127 387
Msa1004210 AT1G29470.1 39.671 547 290 15 21 552 215 736 1.41e-126 390
Msa1004210 AT1G29470.2 39.671 547 290 15 21 552 215 736 1.41e-126 390
Msa1004210 AT2G34300.2 39.671 547 286 15 35 563 227 747 1.85e-125 387
Msa1004210 AT2G34300.3 39.671 547 286 15 35 563 227 747 1.85e-125 387
Msa1004210 AT2G34300.1 39.671 547 286 15 35 563 227 747 1.85e-125 387
Msa1004210 AT5G14430.2 41.279 516 272 11 48 553 82 576 2.02e-125 382
Msa1004210 AT5G04060.1 39.187 541 286 13 26 553 63 573 4.85e-125 380
Msa1004210 AT3G10200.1 38.745 542 288 13 26 553 52 563 8.48e-122 372
Msa1004210 AT3G51070.1 39.729 516 277 11 50 553 376 869 2.62e-119 374
Msa1004210 AT3G56080.2 42.140 458 233 12 55 506 114 545 1.98e-118 362
Msa1004210 AT3G10200.2 38.878 517 272 13 26 528 52 538 1.23e-113 351
Msa1004210 AT3G51070.2 40.938 469 243 11 50 506 376 822 4.85e-107 340
Msa1004210 AT1G19430.1 34.535 527 297 16 46 561 221 710 3.41e-89 291
Msa1004210 AT1G19430.3 34.535 527 297 16 46 561 221 710 3.41e-89 291
Msa1004210 AT1G78240.1 32.799 561 314 17 45 574 145 673 2.47e-87 285
Msa1004210 AT1G78240.2 32.799 561 314 17 45 574 145 673 2.47e-87 285
Msa1004210 AT1G13860.4 31.760 551 307 15 45 565 80 591 1.50e-86 281
Msa1004210 AT1G13860.3 31.760 551 307 15 45 565 80 591 1.50e-86 281
Msa1004210 AT1G13860.1 31.760 551 307 15 45 565 80 591 1.50e-86 281
Msa1004210 AT1G13860.5 31.760 551 307 15 45 565 80 591 1.50e-86 281
Msa1004210 AT2G03480.2 30.713 547 305 11 45 565 85 583 5.21e-83 271
Msa1004210 AT2G03480.1 30.713 547 316 12 45 565 85 594 6.41e-81 266
Msa1004210 AT1G13860.2 33.258 445 242 13 148 565 19 435 2.65e-75 246
Msa1004210 AT1G19430.2 30.170 411 241 14 46 446 221 595 7.76e-49 179
Msa1004210 AT2G03480.3 32.155 283 180 4 45 320 85 362 1.14e-45 167

Find 101 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGAACCATAATCATTTC+TGG 0.166933 7_1:-1542456 None:intergenic
CCCTTCAAAATCATTTGATA+TGG 0.266363 7_1:+1539534 Msa1004210:CDS
TAGTTAACCCTCCAGTTTAT+AGG 0.271919 7_1:-1540244 None:intergenic
TCATCGATGTCTTTCACTTC+TGG 0.275668 7_1:-1540957 None:intergenic
TATTCCACAAGCTTAGTAAA+AGG 0.284054 7_1:-1538436 None:intergenic
TTCTCACCCAGAAATGATTA+TGG 0.315884 7_1:+1542449 Msa1004210:CDS
CATGCATTGTCCTTACTCTT+AGG 0.317866 7_1:-1538400 None:intergenic
TTCTTGTACCCTATTGGTTT+AGG 0.320016 7_1:-1538364 None:intergenic
AAACCTATAGTGAAGATAAT+AGG 0.330407 7_1:+1541072 Msa1004210:CDS
GGTGAATCATTCAATCTTAT+AGG 0.330952 7_1:-1541008 None:intergenic
TATCCTATTATCTTCACTAT+AGG 0.342075 7_1:-1541075 None:intergenic
CAATGGTGAAATATCCAGTT+TGG 0.345411 7_1:+1541204 Msa1004210:CDS
ATATCCTGTCAATCTCTCTT+AGG 0.350584 7_1:-1540186 None:intergenic
AAAGGCTTCTTGTACCCTAT+TGG 0.351569 7_1:-1538370 None:intergenic
TGTCTTATTCCTAAACCAAT+AGG 0.352703 7_1:+1538355 Msa1004210:CDS
TATGACTTGATACATGCTTA+TGG 0.378779 7_1:+1542111 Msa1004210:CDS
CTAATAATAACAGTTCCTTC+TGG 0.382335 7_1:-1542330 None:intergenic
ACAACATTCATAACCCAAAC+TGG 0.384154 7_1:-1541218 None:intergenic
TGTTCTTGGGTAAGTTGAAA+AGG 0.390698 7_1:-1542088 None:intergenic
ATTTATGAAAGAGGCCTCAT+AGG 0.392033 7_1:+1541275 Msa1004210:CDS
ATAGTGAAGATAATAGGATA+TGG 0.398371 7_1:+1541078 Msa1004210:CDS
TCAGATGAATTGCAAAACTT+TGG 0.400648 7_1:-1540436 None:intergenic
TTTCTGGACCACCTATAAAC+TGG 0.402233 7_1:+1540233 Msa1004210:CDS
TGGTAAATATAGAAATGTTA+TGG 0.402597 7_1:+1541148 Msa1004210:CDS
TGTATCAAGTCATATGTTCT+TGG 0.405750 7_1:-1542102 None:intergenic
ATGGATATGAATGCTGGCTT+TGG 0.406035 7_1:+1541167 Msa1004210:CDS
TAATTGAAGGTAGCAAGCTT+TGG 0.406799 7_1:+1539376 Msa1004210:intron
GCTCTAGATGCCTTGTCCCT+TGG 0.411319 7_1:+1539563 Msa1004210:CDS
TGTCAATATACATACTGAAT+AGG 0.421085 7_1:-1542134 None:intergenic
CTTGGCATTATTTATGAAAG+AGG 0.422782 7_1:+1541266 Msa1004210:CDS
ATTAGAACAGTTCTTGATGT+TGG 0.426383 7_1:+1538598 Msa1004210:CDS
TGAGAACCATAATCATTTCT+GGG 0.427890 7_1:-1542455 None:intergenic
AGGGAGGACAAATTGCTATA+TGG 0.430166 7_1:+1540359 Msa1004210:CDS
CTTGTCCCTTGGACTGCTAA+TGG 0.434823 7_1:+1539574 Msa1004210:CDS
CCGGCGGTGTTCTTGAGAAA+TGG 0.435372 7_1:+1540985 Msa1004210:CDS
GATATGAATGCTGGCTTTGG+TGG 0.443506 7_1:+1541170 Msa1004210:CDS
ACATAACCCTTTACACCATC+AGG 0.447571 7_1:-1538529 None:intergenic
AAAGCTATGAACTATTGAAC+AGG 0.451357 7_1:+1540901 Msa1004210:intron
AATGGTGAAATATCCAGTTT+GGG 0.456007 7_1:+1541205 Msa1004210:CDS
ATGTCTTTCACTTCTGGAAG+AGG 0.457490 7_1:-1540951 None:intergenic
AATAACAGATAGAATGAGAT+GGG 0.458438 7_1:+1542386 Msa1004210:CDS
ATGCTCAAATCACTCTCATC+TGG 0.459974 7_1:+1541128 Msa1004210:CDS
TTGGAGTATTCAGCACTCAT+AGG 0.463802 7_1:+1539503 Msa1004210:CDS
GTCTTATTCCTAAACCAATA+GGG 0.464159 7_1:+1538356 Msa1004210:CDS
TTGAGAAAAGAGAATGATGA+TGG 0.465341 7_1:+1541038 Msa1004210:CDS
CTTCCTGTGAATTTAGAGTC+TGG 0.468525 7_1:+1538571 Msa1004210:CDS
AAAAGTCACAAAATTGGATA+AGG 0.469959 7_1:+1538461 Msa1004210:CDS
GTATCAAGTCATATGTTCTT+GGG 0.478299 7_1:-1542101 None:intergenic
GTGATGTTTGCACTTGAAAG+AGG 0.484883 7_1:+1539466 Msa1004210:CDS
TATACCTAAGAGAGATTGAC+AGG 0.491017 7_1:+1540182 Msa1004210:CDS
GTCACAAAATTGGATAAGGT+TGG 0.491059 7_1:+1538465 Msa1004210:CDS
AAAGGAACAGAACAGTTTAG+AGG 0.493506 7_1:+1540300 Msa1004210:CDS
GTTCTTGGGTAAGTTGAAAA+GGG 0.494722 7_1:-1542087 None:intergenic
TGGTGGATTTGCAGCTGCAA+TGG 0.501062 7_1:+1541187 Msa1004210:CDS
TTACTCTTAGGCCAAGGAAA+AGG 0.503744 7_1:-1538388 None:intergenic
AGAGGACTTCCTGCTATGCT+TGG 0.504822 7_1:+1539484 Msa1004210:CDS
TCATAGGAACTTACATGGAT+TGG 0.511002 7_1:+1541291 Msa1004210:CDS
AAGCTTTGGATCAGCTATGA+TGG 0.521435 7_1:+1539390 Msa1004210:CDS
CTGTGAATTTAGAGTCTGGA+AGG 0.523745 7_1:+1538575 Msa1004210:CDS
CTGAATACTCCAAGCATAGC+AGG 0.524451 7_1:-1539493 None:intergenic
ACAGATAGAATGAGATGGGA+AGG 0.525765 7_1:+1542390 Msa1004210:CDS
GATAGAATGAGATGGGAAGG+AGG 0.526208 7_1:+1542393 Msa1004210:CDS
TCTTTGTACGACAACATGCT+TGG 0.526690 7_1:+1542513 Msa1004210:three_prime_UTR
AGAGCCAACAGTGTTGGAAA+AGG 0.527030 7_1:+1540282 Msa1004210:CDS
ACAGTTCTTGATGTTGGATG+TGG 0.528742 7_1:+1538604 Msa1004210:CDS
ACTTGCAATGCAAATGTGTT+GGG 0.533222 7_1:+1540324 Msa1004210:CDS
AACTTGCAATGCAAATGTGT+TGG 0.534357 7_1:+1540323 Msa1004210:CDS
AATTCATCTGACTCTGATGC+TGG 0.536773 7_1:+1540448 Msa1004210:CDS
TGAGCATCATGTTCATCACT+TGG 0.541880 7_1:-1539442 None:intergenic
CTTCCAGACTCTAAATTCAC+AGG 0.544173 7_1:-1538574 None:intergenic
AAATAACAGATAGAATGAGA+TGG 0.551015 7_1:+1542385 Msa1004210:CDS
CAAAATTGGATAAGGTTGGA+TGG 0.551773 7_1:+1538469 Msa1004210:CDS
AGTTGAACAAAATTCAAAGT+GGG 0.553005 7_1:-1538221 None:intergenic
GCAAACAGAGCCAACAGTGT+TGG 0.557287 7_1:+1540276 Msa1004210:CDS
ATATTGTTATTGAGATGCAT+CGG 0.562461 7_1:+1542298 Msa1004210:CDS
AGGCCTCATAGGAACTTACA+TGG 0.568438 7_1:+1541286 Msa1004210:CDS
AAATTACCATTAGCAGTCCA+AGG 0.570312 7_1:-1539580 None:intergenic
AATGTTATGGATATGAATGC+TGG 0.574824 7_1:+1541161 Msa1004210:CDS
GAAAGTACCCAAAATCCGCC+AGG 0.575494 7_1:-1540214 None:intergenic
TTGTCCTTACTCTTAGGCCA+AGG 0.579345 7_1:-1538394 None:intergenic
CATCGGATTCTTCGTCCAGA+AGG 0.581866 7_1:+1542315 Msa1004210:CDS
CACCACCAGGAAACACAAAA+CGG 0.582482 7_1:-1538495 None:intergenic
AATCCATGTAAGTTCCTATG+AGG 0.584131 7_1:-1541289 None:intergenic
CATTAGCAGTCCAAGGGACA+AGG 0.591170 7_1:-1539573 None:intergenic
CAGTTCTTGATGTTGGATGT+GGG 0.600933 7_1:+1538605 Msa1004210:CDS
CCATTTCTCAAGAACACCGC+CGG 0.608620 7_1:-1540985 None:intergenic
CTGGACCACCTATAAACTGG+AGG 0.610529 7_1:+1540236 Msa1004210:CDS
CATCTGACTCTGATGCTGGA+TGG 0.616421 7_1:+1540452 Msa1004210:CDS
ATTGACAGGATATTGCGTCC+TGG 0.625000 7_1:+1540196 Msa1004210:CDS
AAAGACATCGATGAAATCGC+CGG 0.630243 7_1:+1540966 Msa1004210:CDS
TAGTTGAACAAAATTCAAAG+TGG 0.632000 7_1:-1538222 None:intergenic
TTAACCCTCCAGTTTATAGG+TGG 0.632189 7_1:-1540241 None:intergenic
GGAGGGTTAACTATAAAGCA+TGG 0.632607 7_1:+1540254 Msa1004210:CDS
CTAAGAGTAAGGACAATGCA+TGG 0.638483 7_1:+1538401 Msa1004210:CDS
TGGACCACCTATAAACTGGA+GGG 0.642876 7_1:+1540237 Msa1004210:CDS
AATTACCATTAGCAGTCCAA+GGG 0.644069 7_1:-1539579 None:intergenic
GGAAAAGAAGTACCACCACC+AGG 0.648807 7_1:-1538508 None:intergenic
GACAGGATATTGCGTCCTGG+CGG 0.665990 7_1:+1540199 Msa1004210:CDS
AGTTCTTGATGTTGGATGTG+GGG 0.672357 7_1:+1538606 Msa1004210:CDS
GATTGAATGATTCACCACCA+AGG 0.701587 7_1:+1541015 Msa1004210:CDS
GACATCGATGAAATCGCCGG+CGG 0.750790 7_1:+1540969 Msa1004210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATTAAACTAAACA+TGG - chr7_1:1538643-1538662 None:intergenic 10.0%
!! GTATTAAAAACAATAAATTA+AGG + chr7_1:1541752-1541771 Msa1004210:intron 10.0%
!! AATATAAAAAGTCACAAAAT+TGG + chr7_1:1538455-1538474 Msa1004210:CDS 15.0%
!!! ATGCATTTTATATGATTTAT+TGG - chr7_1:1540391-1540410 None:intergenic 15.0%
!! CATAAATAATAGTAAAATAC+AGG - chr7_1:1540538-1540557 None:intergenic 15.0%
!!! ATATTTGATATAGATTTTGA+AGG - chr7_1:1541555-1541574 None:intergenic 15.0%
!! TTTACTAATATTACCAATAA+TGG + chr7_1:1542187-1542206 Msa1004210:intron 15.0%
!!! TTGCGAAAATAGTTTTTTTT+TGG - chr7_1:1538298-1538317 None:intergenic 20.0%
!! TTAGATAATGCTATTAAAAC+TGG + chr7_1:1538799-1538818 Msa1004210:intron 20.0%
!!! TTTGTCATTTTTTTCTACAA+TGG + chr7_1:1538998-1539017 Msa1004210:intron 20.0%
!! AGTTTGAATTTGATATTTGT+TGG + chr7_1:1539312-1539331 Msa1004210:intron 20.0%
!!! TTTTGAATGTGTATAATTGA+AGG + chr7_1:1539363-1539382 Msa1004210:intron 20.0%
!! TTGATTCTTAATTTCTCATA+TGG - chr7_1:1540063-1540082 None:intergenic 20.0%
!! CATATTTAATGTAGAGAAAT+TGG + chr7_1:1540100-1540119 Msa1004210:intron 20.0%
!!! TCAATTTAATTTGTCAAAGA+TGG + chr7_1:1540157-1540176 Msa1004210:intron 20.0%
!! TTTATGATCTGATACATAAA+TGG + chr7_1:1540664-1540683 Msa1004210:intron 20.0%
!! AAAATATGAGTTTATGCTAT+AGG + chr7_1:1540706-1540725 Msa1004210:intron 20.0%
!! GAAATTTGAATATAAGACAT+TGG - chr7_1:1540881-1540900 None:intergenic 20.0%
!! TGGTAAATATAGAAATGTTA+TGG + chr7_1:1541148-1541167 Msa1004210:CDS 20.0%
!!! TTTTTGTTTAACTTCAAACT+TGG + chr7_1:1541503-1541522 Msa1004210:intron 20.0%
!! GATTTAATTAATGCACTATA+AGG - chr7_1:1541645-1541664 None:intergenic 20.0%
!!! ATTGGTAATATTAGTAAACA+TGG - chr7_1:1542185-1542204 None:intergenic 20.0%
! AGTTGAACAAAATTCAAAGT+GGG - chr7_1:1538224-1538243 None:intergenic 25.0%
! TAGTTGAACAAAATTCAAAG+TGG - chr7_1:1538225-1538244 None:intergenic 25.0%
!!! GAAATTTTTTCTGTCTTTTG+GGG - chr7_1:1538276-1538295 None:intergenic 25.0%
!!! GGAAATTTTTTCTGTCTTTT+GGG - chr7_1:1538277-1538296 None:intergenic 25.0%
!!! TGGAAATTTTTTCTGTCTTT+TGG - chr7_1:1538278-1538297 None:intergenic 25.0%
!!! GTTAATCTTTCATTGTTTTG+TGG - chr7_1:1538334-1538353 None:intergenic 25.0%
! AAAAGTCACAAAATTGGATA+AGG + chr7_1:1538461-1538480 Msa1004210:CDS 25.0%
!!! TATTATTGAGTTTTGAACTG+TGG + chr7_1:1538664-1538683 Msa1004210:intron 25.0%
! GTTCAACTAAAACTATACTA+AGG - chr7_1:1538895-1538914 None:intergenic 25.0%
!!! TAGTATAGTTTTAGTTGAAC+CGG + chr7_1:1538895-1538914 Msa1004210:intron 25.0%
! CTTAATATCACAGCAAAATA+CGG - chr7_1:1539148-1539167 None:intergenic 25.0%
! GAAGCATAAGATATATCATA+TGG - chr7_1:1539278-1539297 None:intergenic 25.0%
!! TTGATAACCTATAAAGAATC+TGG + chr7_1:1539339-1539358 Msa1004210:intron 25.0%
! TGATAACCTATAAAGAATCT+GGG + chr7_1:1539340-1539359 Msa1004210:intron 25.0%
!! CCATATCAAATGATTTTGAA+GGG - chr7_1:1539537-1539556 None:intergenic 25.0%
! AATCAAACTCTTCTCATATA+AGG - chr7_1:1540640-1540659 None:intergenic 25.0%
! AAACCTATAGTGAAGATAAT+AGG + chr7_1:1541072-1541091 Msa1004210:CDS 25.0%
! TATCCTATTATCTTCACTAT+AGG - chr7_1:1541078-1541097 None:intergenic 25.0%
! ATAGTGAAGATAATAGGATA+TGG + chr7_1:1541078-1541097 Msa1004210:CDS 25.0%
!!! TTGTTGCTTTTTGAATCAAA+CGG - chr7_1:1541245-1541264 None:intergenic 25.0%
!! GAGCAAATAATTTAGCATTT+TGG + chr7_1:1541413-1541432 Msa1004210:intron 25.0%
! TATCAAATATATGTTGCTGT+TGG + chr7_1:1541565-1541584 Msa1004210:intron 25.0%
!!! ACTTTTTGATTGAGAAAAAC+AGG - chr7_1:1541918-1541937 None:intergenic 25.0%
!!! TCCTTTAATTTCTCCTATTT+TGG + chr7_1:1541958-1541977 Msa1004210:intron 25.0%
! TCCAAAATAGGAGAAATTAA+AGG - chr7_1:1541962-1541981 None:intergenic 25.0%
! TGTCAATATACATACTGAAT+AGG - chr7_1:1542137-1542156 None:intergenic 25.0%
!! ATATTGTTATTGAGATGCAT+CGG + chr7_1:1542298-1542317 Msa1004210:CDS 25.0%
! AAATAACAGATAGAATGAGA+TGG + chr7_1:1542385-1542404 Msa1004210:CDS 25.0%
! AATAACAGATAGAATGAGAT+GGG + chr7_1:1542386-1542405 Msa1004210:CDS 25.0%
CACAACAAAAACAGAAAAAG+AGG + chr7_1:1538036-1538055 Msa1004210:five_prime_UTR 30.0%
!! TTTTGTTGATGAAGAGTAAG+TGG - chr7_1:1538178-1538197 None:intergenic 30.0%
! TGTCTTATTCCTAAACCAAT+AGG + chr7_1:1538355-1538374 Msa1004210:CDS 30.0%
! GTCTTATTCCTAAACCAATA+GGG + chr7_1:1538356-1538375 Msa1004210:CDS 30.0%
TATTCCACAAGCTTAGTAAA+AGG - chr7_1:1538439-1538458 None:intergenic 30.0%
ATTAGAACAGTTCTTGATGT+TGG + chr7_1:1538598-1538617 Msa1004210:CDS 30.0%
TCTTGTTCAACTGATTGAAA+TGG - chr7_1:1538835-1538854 None:intergenic 30.0%
AAACTATACTAAGGTACAAC+CGG - chr7_1:1538886-1538905 None:intergenic 30.0%
!!! AGTATAGTTTTAGTTGAACC+GGG + chr7_1:1538896-1538915 Msa1004210:intron 30.0%
! ACTTTTGATCATGGTTCAAT+TGG - chr7_1:1539029-1539048 None:intergenic 30.0%
! CCATGATCAAAAGTTTTTAC+CGG + chr7_1:1539035-1539054 Msa1004210:intron 30.0%
TGCTGTGATATTAAGATTCA+AGG + chr7_1:1539153-1539172 Msa1004210:intron 30.0%
TCAAAACCCAGATTCTTTAT+AGG - chr7_1:1539349-1539368 None:intergenic 30.0%
CCCTTCAAAATCATTTGATA+TGG + chr7_1:1539534-1539553 Msa1004210:CDS 30.0%
! GCCATATCAAATGATTTTGA+AGG - chr7_1:1539538-1539557 None:intergenic 30.0%
TCAGATGAATTGCAAAACTT+TGG - chr7_1:1540439-1540458 None:intergenic 30.0%
AAAGCTATGAACTATTGAAC+AGG + chr7_1:1540901-1540920 Msa1004210:intron 30.0%
GGTGAATCATTCAATCTTAT+AGG - chr7_1:1541011-1541030 None:intergenic 30.0%
TTGAGAAAAGAGAATGATGA+TGG + chr7_1:1541038-1541057 Msa1004210:CDS 30.0%
AATGTTATGGATATGAATGC+TGG + chr7_1:1541161-1541180 Msa1004210:CDS 30.0%
AATGGTGAAATATCCAGTTT+GGG + chr7_1:1541205-1541224 Msa1004210:CDS 30.0%
GATTCAAAAAGCAACAATCT+TGG + chr7_1:1541248-1541267 Msa1004210:CDS 30.0%
CTTGGCATTATTTATGAAAG+AGG + chr7_1:1541266-1541285 Msa1004210:CDS 30.0%
!! CTTTTTAAGCTCCTTTCTTA+AGG + chr7_1:1541348-1541367 Msa1004210:intron 30.0%
ACAAGTCAAAACCTTAAGAA+AGG - chr7_1:1541362-1541381 None:intergenic 30.0%
AACAAAAACTCACTGCAAAA+TGG - chr7_1:1541491-1541510 None:intergenic 30.0%
! CATTGTCATTTGTGAATGAA+TGG - chr7_1:1541690-1541709 None:intergenic 30.0%
CATTCATTCACAAATGACAA+TGG + chr7_1:1541688-1541707 Msa1004210:intron 30.0%
AATTCTGACACATCAGATTA+AGG + chr7_1:1541729-1541748 Msa1004210:intron 30.0%
ATTCTGACACATCAGATTAA+GGG + chr7_1:1541730-1541749 Msa1004210:intron 30.0%
TGTATCAAGATGTCCAAAAT+AGG - chr7_1:1541974-1541993 None:intergenic 30.0%
! TTCGTTATTTCGACTTCAAA+GGG - chr7_1:1542035-1542054 None:intergenic 30.0%
GTATCAAGTCATATGTTCTT+GGG - chr7_1:1542104-1542123 None:intergenic 30.0%
TGTATCAAGTCATATGTTCT+TGG - chr7_1:1542105-1542124 None:intergenic 30.0%
TATGACTTGATACATGCTTA+TGG + chr7_1:1542111-1542130 Msa1004210:CDS 30.0%
GACAGATATGTTACCATTAT+TGG - chr7_1:1542203-1542222 None:intergenic 30.0%
! ACAATATGAATGTTTGTTGC+AGG + chr7_1:1542262-1542281 Msa1004210:intron 30.0%
CTAATAATAACAGTTCCTTC+TGG - chr7_1:1542333-1542352 None:intergenic 30.0%
TGAGAACCATAATCATTTCT+GGG - chr7_1:1542458-1542477 None:intergenic 30.0%
TTGAGAACCATAATCATTTC+TGG - chr7_1:1542459-1542478 None:intergenic 30.0%
TGAAGTGAAAAAAGAGGAAG+TGG - chr7_1:1538155-1538174 None:intergenic 35.0%
AAGTGGTGAAGTGAAAAAAG+AGG - chr7_1:1538161-1538180 None:intergenic 35.0%
!!! TGGGATTGTTTTGTTGTTGT+TGG - chr7_1:1538205-1538224 None:intergenic 35.0%
!! TTCTTGTACCCTATTGGTTT+AGG - chr7_1:1538367-1538386 None:intergenic 35.0%
! TGTTCCTTTTACTAAGCTTG+TGG + chr7_1:1538432-1538451 Msa1004210:CDS 35.0%
GTCACAAAATTGGATAAGGT+TGG + chr7_1:1538465-1538484 Msa1004210:CDS 35.0%
CAAAATTGGATAAGGTTGGA+TGG + chr7_1:1538469-1538488 Msa1004210:CDS 35.0%
!! TTCTTTTCCTGATGGTGTAA+AGG + chr7_1:1538522-1538541 Msa1004210:CDS 35.0%
!! TCTTTTCCTGATGGTGTAAA+GGG + chr7_1:1538523-1538542 Msa1004210:CDS 35.0%
CGTCGATGTTGCAAATATAA+AGG + chr7_1:1538774-1538793 Msa1004210:intron 35.0%
GAAACAATTAGTTCGCTGAT+TGG + chr7_1:1538853-1538872 Msa1004210:intron 35.0%
! CCGGTAAAAACTTTTGATCA+TGG - chr7_1:1539038-1539057 None:intergenic 35.0%
AAACTAGACAAAGATCGATC+CGG - chr7_1:1539057-1539076 None:intergenic 35.0%
TAGCAGAGATATATACCTTG+AGG + chr7_1:1539235-1539254 Msa1004210:intron 35.0%
TAAAAATGTATGCTGCCTCA+AGG - chr7_1:1539253-1539272 None:intergenic 35.0%
TAATTGAAGGTAGCAAGCTT+TGG + chr7_1:1539376-1539395 Msa1004210:intron 35.0%
AATTACCATTAGCAGTCCAA+GGG - chr7_1:1539582-1539601 None:intergenic 35.0%
AAATTACCATTAGCAGTCCA+AGG - chr7_1:1539583-1539602 None:intergenic 35.0%
TATACCTAAGAGAGATTGAC+AGG + chr7_1:1540182-1540201 Msa1004210:CDS 35.0%
ATATCCTGTCAATCTCTCTT+AGG - chr7_1:1540189-1540208 None:intergenic 35.0%
TAGTTAACCCTCCAGTTTAT+AGG - chr7_1:1540247-1540266 None:intergenic 35.0%
AAAGGAACAGAACAGTTTAG+AGG + chr7_1:1540300-1540319 Msa1004210:CDS 35.0%
AACTTGCAATGCAAATGTGT+TGG + chr7_1:1540323-1540342 Msa1004210:CDS 35.0%
ACTTGCAATGCAAATGTGTT+GGG + chr7_1:1540324-1540343 Msa1004210:CDS 35.0%
TCACAAGTGTTTACGTTACT+AGG - chr7_1:1540604-1540623 None:intergenic 35.0%
TCTACATCAGAGTCTTTGTT+TGG - chr7_1:1540752-1540771 None:intergenic 35.0%
! TCATTCTCTTTTCTCAACCT+TGG - chr7_1:1541035-1541054 None:intergenic 35.0%
CAATGGTGAAATATCCAGTT+TGG + chr7_1:1541204-1541223 Msa1004210:CDS 35.0%
ACAACATTCATAACCCAAAC+TGG - chr7_1:1541221-1541240 None:intergenic 35.0%
ATTTATGAAAGAGGCCTCAT+AGG + chr7_1:1541275-1541294 Msa1004210:CDS 35.0%
AATCCATGTAAGTTCCTATG+AGG - chr7_1:1541292-1541311 None:intergenic 35.0%
TCATAGGAACTTACATGGAT+TGG + chr7_1:1541291-1541310 Msa1004210:CDS 35.0%
AGGAGCTTAAAAAGTCAACA+AGG - chr7_1:1541342-1541361 None:intergenic 35.0%
! TATATGTTGCTGTTGGAACT+TGG + chr7_1:1541572-1541591 Msa1004210:intron 35.0%
! CTTCGTTATTTCGACTTCAA+AGG - chr7_1:1542036-1542055 None:intergenic 35.0%
!! CTTTGAAGTCGAAATAACGA+AGG + chr7_1:1542034-1542053 Msa1004210:intron 35.0%
!!! AACAGCATTGTTTTGTTTGC+AGG + chr7_1:1542058-1542077 Msa1004210:intron 35.0%
! GTTCTTGGGTAAGTTGAAAA+GGG - chr7_1:1542090-1542109 None:intergenic 35.0%
! TGTTCTTGGGTAAGTTGAAA+AGG - chr7_1:1542091-1542110 None:intergenic 35.0%
TTCTCACCCAGAAATGATTA+TGG + chr7_1:1542449-1542468 Msa1004210:CDS 35.0%
AAAGGCTTCTTGTACCCTAT+TGG - chr7_1:1538373-1538392 None:intergenic 40.0%
TTACTCTTAGGCCAAGGAAA+AGG - chr7_1:1538391-1538410 None:intergenic 40.0%
! TTTTCCTTGGCCTAAGAGTA+AGG + chr7_1:1538390-1538409 Msa1004210:CDS 40.0%
CATGCATTGTCCTTACTCTT+AGG - chr7_1:1538403-1538422 None:intergenic 40.0%
CTAAGAGTAAGGACAATGCA+TGG + chr7_1:1538401-1538420 Msa1004210:CDS 40.0%
ACATAACCCTTTACACCATC+AGG - chr7_1:1538532-1538551 None:intergenic 40.0%
! CTTCCTGTGAATTTAGAGTC+TGG + chr7_1:1538571-1538590 Msa1004210:CDS 40.0%
CTTCCAGACTCTAAATTCAC+AGG - chr7_1:1538577-1538596 None:intergenic 40.0%
! CTGTGAATTTAGAGTCTGGA+AGG + chr7_1:1538575-1538594 Msa1004210:CDS 40.0%
ACAGTTCTTGATGTTGGATG+TGG + chr7_1:1538604-1538623 Msa1004210:CDS 40.0%
CAGTTCTTGATGTTGGATGT+GGG + chr7_1:1538605-1538624 Msa1004210:CDS 40.0%
AGTTCTTGATGTTGGATGTG+GGG + chr7_1:1538606-1538625 Msa1004210:CDS 40.0%
TGATGTGACAGTGATTGATG+CGG + chr7_1:1538725-1538744 Msa1004210:intron 40.0%
!! GCGGCTATAGTTCTAAATAC+TGG + chr7_1:1538744-1538763 Msa1004210:intron 40.0%
CTATTAAAACTGGACCGAAC+CGG + chr7_1:1538809-1538828 Msa1004210:intron 40.0%
GTTCAACTGATTGAAATGGC+CGG - chr7_1:1538831-1538850 None:intergenic 40.0%
!! TTCGCTGATTGGTTTGTTTC+CGG + chr7_1:1538864-1538883 Msa1004210:intron 40.0%
ACGGATAAATGAGACTGATG+CGG - chr7_1:1539129-1539148 None:intergenic 40.0%
GCATCCATGATTCTTATGTG+TGG - chr7_1:1539201-1539220 None:intergenic 40.0%
TATCTCTGCTACAGTGATTG+AGG - chr7_1:1539226-1539245 None:intergenic 40.0%
!! AAGCTTTGGATCAGCTATGA+TGG + chr7_1:1539390-1539409 Msa1004210:CDS 40.0%
TGAGCATCATGTTCATCACT+TGG - chr7_1:1539445-1539464 None:intergenic 40.0%
GTGATGTTTGCACTTGAAAG+AGG + chr7_1:1539466-1539485 Msa1004210:CDS 40.0%
! TTGGAGTATTCAGCACTCAT+AGG + chr7_1:1539503-1539522 Msa1004210:CDS 40.0%
TGTCGAATACCAACATGTGT+CGG + chr7_1:1539770-1539789 Msa1004210:intron 40.0%
! TGACGTATCAGGTGTTACAT+AGG - chr7_1:1539830-1539849 None:intergenic 40.0%
CACCTGATACGTCATATTGA+AGG + chr7_1:1539836-1539855 Msa1004210:intron 40.0%
CTCCTTCAATATGACGTATC+AGG - chr7_1:1539841-1539860 None:intergenic 40.0%
TATCGTGTCAGTATTGTGTC+TGG + chr7_1:1539961-1539980 Msa1004210:intron 40.0%
TGTGTCTGGTATTTGTACCA+CGG + chr7_1:1539975-1539994 Msa1004210:intron 40.0%
AATATGTAGCATCTACACCG+TGG - chr7_1:1539995-1540014 None:intergenic 40.0%
TTTCTGGACCACCTATAAAC+TGG + chr7_1:1540233-1540252 Msa1004210:CDS 40.0%
TTAACCCTCCAGTTTATAGG+TGG - chr7_1:1540244-1540263 None:intergenic 40.0%
GGAGGGTTAACTATAAAGCA+TGG + chr7_1:1540254-1540273 Msa1004210:CDS 40.0%
! TGTTCCTTTTCCAACACTGT+TGG - chr7_1:1540289-1540308 None:intergenic 40.0%
TGTTGGGAAAAAGTTGCTGA+GGG + chr7_1:1540340-1540359 Msa1004210:CDS 40.0%
AGGGAGGACAAATTGCTATA+TGG + chr7_1:1540359-1540378 Msa1004210:CDS 40.0%
AATTCATCTGACTCTGATGC+TGG + chr7_1:1540448-1540467 Msa1004210:CDS 40.0%
! ATGTCTTTCACTTCTGGAAG+AGG - chr7_1:1540954-1540973 None:intergenic 40.0%
TCATCGATGTCTTTCACTTC+TGG - chr7_1:1540960-1540979 None:intergenic 40.0%
AAAGACATCGATGAAATCGC+CGG + chr7_1:1540966-1540985 Msa1004210:CDS 40.0%
GATTGAATGATTCACCACCA+AGG + chr7_1:1541015-1541034 Msa1004210:CDS 40.0%
! TTCTCTTTTCTCAACCTTGG+TGG - chr7_1:1541032-1541051 None:intergenic 40.0%
ATGCTCAAATCACTCTCATC+TGG + chr7_1:1541128-1541147 Msa1004210:CDS 40.0%
!! ATGGATATGAATGCTGGCTT+TGG + chr7_1:1541167-1541186 Msa1004210:CDS 40.0%
GACTTCAAAGGGTCATACTA+GGG - chr7_1:1542024-1542043 None:intergenic 40.0%
ACAGATAGAATGAGATGGGA+AGG + chr7_1:1542390-1542409 Msa1004210:CDS 40.0%
TCTTTGTACGACAACATGCT+TGG + chr7_1:1542513-1542532 Msa1004210:three_prime_UTR 40.0%
!!! TGTCTTTTGGGGTCTTCACA+TGG - chr7_1:1538265-1538284 None:intergenic 45.0%
! GGTACAAGAAGCCTTTTCCT+TGG + chr7_1:1538377-1538396 Msa1004210:CDS 45.0%
TTGTCCTTACTCTTAGGCCA+AGG - chr7_1:1538397-1538416 None:intergenic 45.0%
CACCACCAGGAAACACAAAA+CGG - chr7_1:1538498-1538517 None:intergenic 45.0%
! GGTGGTACTTCTTTTCCTGA+TGG + chr7_1:1538514-1538533 Msa1004210:CDS 45.0%
ACTGATTGAAATGGCCGGTT+CGG - chr7_1:1538826-1538845 None:intergenic 45.0%
AGCATGTGTTGAACCAACTC+TGG - chr7_1:1538928-1538947 None:intergenic 45.0%
! CTATTGCAGATTGGTGGTTG+CGG - chr7_1:1539103-1539122 None:intergenic 45.0%
ATGCGGTCACTATTGCAGAT+TGG - chr7_1:1539112-1539131 None:intergenic 45.0%
TGCGCCACACATAAGAATCA+TGG + chr7_1:1539194-1539213 Msa1004210:intron 45.0%
CTGAATACTCCAAGCATAGC+AGG - chr7_1:1539496-1539515 None:intergenic 45.0%
! GACACATGTTGAAGGTGTGT+CGG - chr7_1:1539741-1539760 None:intergenic 45.0%
GACACACCTTCAACATGTGT+CGG + chr7_1:1539740-1539759 Msa1004210:intron 45.0%
CAAACACCGACACATGTTGA+AGG - chr7_1:1539749-1539768 None:intergenic 45.0%
! CTTCAACATGTGTCGGTGTT+TGG + chr7_1:1539747-1539766 Msa1004210:intron 45.0%
! CTTCATGTTGAAGGCATGTC+TGG - chr7_1:1539799-1539818 None:intergenic 45.0%
ATGCCTTCAACATGAAGCGT+TGG + chr7_1:1539802-1539821 Msa1004210:intron 45.0%
!! CGTCATATTGAAGGAGTGTC+TGG + chr7_1:1539845-1539864 Msa1004210:intron 45.0%
!! ATTGAAGGAGTGTCTGGTGT+CGG + chr7_1:1539851-1539870 Msa1004210:intron 45.0%
CTGACACGATATGTCGACAA+CGG - chr7_1:1539952-1539971 None:intergenic 45.0%
ATTGACAGGATATTGCGTCC+TGG + chr7_1:1540196-1540215 Msa1004210:CDS 45.0%
TGGACCACCTATAAACTGGA+GGG + chr7_1:1540237-1540256 Msa1004210:CDS 45.0%
! AGAGCCAACAGTGTTGGAAA+AGG + chr7_1:1540282-1540301 Msa1004210:CDS 45.0%
GTGTTGGGAAAAAGTTGCTG+AGG + chr7_1:1540339-1540358 Msa1004210:CDS 45.0%
!! GATATGAATGCTGGCTTTGG+TGG + chr7_1:1541170-1541189 Msa1004210:CDS 45.0%
AGGCCTCATAGGAACTTACA+TGG + chr7_1:1541286-1541305 Msa1004210:CDS 45.0%
CGACTTCAAAGGGTCATACT+AGG - chr7_1:1542025-1542044 None:intergenic 45.0%
GATAGAATGAGATGGGAAGG+AGG + chr7_1:1542393-1542412 Msa1004210:CDS 45.0%
!! TATTAAAAACAATAAATTAA+GGG + chr7_1:1541753-1541772 Msa1004210:intron 5.0%
! GGTGACCGTTTTGTGTTTCC+TGG + chr7_1:1538490-1538509 Msa1004210:CDS 50.0%
! GACCGTTTTGTGTTTCCTGG+TGG + chr7_1:1538493-1538512 Msa1004210:CDS 50.0%
! CGTTTTGTGTTTCCTGGTGG+TGG + chr7_1:1538496-1538515 Msa1004210:CDS 50.0%
!! GGAAAAGAAGTACCACCACC+AGG - chr7_1:1538511-1538530 None:intergenic 50.0%
! AACCAACTCTGGCTCAATCC+CGG - chr7_1:1538917-1538936 None:intergenic 50.0%
CGGTCACTATTGCAGATTGG+TGG - chr7_1:1539109-1539128 None:intergenic 50.0%
AGAGGACTTCCTGCTATGCT+TGG + chr7_1:1539484-1539503 Msa1004210:CDS 50.0%
CATTAGCAGTCCAAGGGACA+AGG - chr7_1:1539576-1539595 None:intergenic 50.0%
CTTGTCCCTTGGACTGCTAA+TGG + chr7_1:1539574-1539593 Msa1004210:CDS 50.0%
CAGTGTTGCGTCTGTGTTAG+TGG - chr7_1:1539707-1539726 None:intergenic 50.0%
GTCTGGTATCCGACACATGT+TGG - chr7_1:1539782-1539801 None:intergenic 50.0%
GCACCAACGCTTCATGTTGA+AGG - chr7_1:1539808-1539827 None:intergenic 50.0%
!!! TATTGCGTCCTGGCGGATTT+TGG + chr7_1:1540206-1540225 Msa1004210:CDS 50.0%
!!! ATTGCGTCCTGGCGGATTTT+GGG + chr7_1:1540207-1540226 Msa1004210:CDS 50.0%
!! GAAAGTACCCAAAATCCGCC+AGG - chr7_1:1540217-1540236 None:intergenic 50.0%
!! GGCGGATTTTGGGTACTTTC+TGG + chr7_1:1540217-1540236 Msa1004210:CDS 50.0%
CTGGACCACCTATAAACTGG+AGG + chr7_1:1540236-1540255 Msa1004210:CDS 50.0%
GCAAACAGAGCCAACAGTGT+TGG + chr7_1:1540276-1540295 Msa1004210:CDS 50.0%
TGGGAAAAAGTTGCTGAGGG+AGG + chr7_1:1540343-1540362 Msa1004210:CDS 50.0%
CATCTGACTCTGATGCTGGA+TGG + chr7_1:1540452-1540471 Msa1004210:CDS 50.0%
CCATTTCTCAAGAACACCGC+CGG - chr7_1:1540988-1541007 None:intergenic 50.0%
!! TGGTGGATTTGCAGCTGCAA+TGG + chr7_1:1541187-1541206 Msa1004210:CDS 50.0%
CATCGGATTCTTCGTCCAGA+AGG + chr7_1:1542315-1542334 Msa1004210:CDS 50.0%
AACCGGGATTGAGCCAGAGT+TGG + chr7_1:1538912-1538931 Msa1004210:intron 55.0%
TCTTATGTGTGGCGCAGTCG+CGG - chr7_1:1539190-1539209 None:intergenic 55.0%
! GCTCTAGATGCCTTGTCCCT+TGG + chr7_1:1539563-1539582 Msa1004210:CDS 55.0%
GACAGGATATTGCGTCCTGG+CGG + chr7_1:1540199-1540218 Msa1004210:CDS 55.0%
GACATCGATGAAATCGCCGG+CGG + chr7_1:1540969-1540988 Msa1004210:CDS 55.0%
CCGGCGGTGTTCTTGAGAAA+TGG + chr7_1:1540985-1541004 Msa1004210:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 1538024 1542621 1538024 ID=Msa1004210;Name=Msa1004210
chr7_1 mRNA 1538024 1542621 1538024 ID=Msa1004210-mRNA-1;Parent=Msa1004210;Name=Msa1004210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|1|1|1|0.8|0.83|6|127|580
chr7_1 exon 1538024 1538627 1538024 ID=Msa1004210-mRNA-1:exon:617;Parent=Msa1004210-mRNA-1
chr7_1 exon 1539385 1539595 1539385 ID=Msa1004210-mRNA-1:exon:618;Parent=Msa1004210-mRNA-1
chr7_1 exon 1540176 1540473 1540176 ID=Msa1004210-mRNA-1:exon:619;Parent=Msa1004210-mRNA-1
chr7_1 exon 1540905 1541312 1540905 ID=Msa1004210-mRNA-1:exon:620;Parent=Msa1004210-mRNA-1
chr7_1 exon 1542080 1542157 1542080 ID=Msa1004210-mRNA-1:exon:621;Parent=Msa1004210-mRNA-1
chr7_1 exon 1542284 1542621 1542284 ID=Msa1004210-mRNA-1:exon:622;Parent=Msa1004210-mRNA-1
chr7_1 five_prime_UTR 1538024 1538090 1538024 ID=Msa1004210-mRNA-1:five_prime_utr;Parent=Msa1004210-mRNA-1
chr7_1 CDS 1538091 1538627 1538091 ID=Msa1004210-mRNA-1:cds;Parent=Msa1004210-mRNA-1
chr7_1 CDS 1539385 1539595 1539385 ID=Msa1004210-mRNA-1:cds;Parent=Msa1004210-mRNA-1
chr7_1 CDS 1540176 1540473 1540176 ID=Msa1004210-mRNA-1:cds;Parent=Msa1004210-mRNA-1
chr7_1 CDS 1540905 1541312 1540905 ID=Msa1004210-mRNA-1:cds;Parent=Msa1004210-mRNA-1
chr7_1 CDS 1542080 1542157 1542080 ID=Msa1004210-mRNA-1:cds;Parent=Msa1004210-mRNA-1
chr7_1 CDS 1542284 1542494 1542284 ID=Msa1004210-mRNA-1:cds;Parent=Msa1004210-mRNA-1
chr7_1 three_prime_UTR 1542495 1542621 1542495 ID=Msa1004210-mRNA-1:three_prime_utr;Parent=Msa1004210-mRNA-1
Gene Sequence

>Msa1004210

ATGTTCTCAAAATATCTCAACATCTTCTTCATCACTACTCTCTTCATTTTCTTATACATAACCACTTCCTCTTTTTTCACTTCACCACTTACTCTTCATCAACAAAACTCTCCAACAACAACAAAACAATCCCACTTTGAATTTTGTTCAACTAACTACACAAACTATTGTCCATGTGAAGACCCCAAAAGACAGAAAAAATTTCCAAAAAAAAACTATTTTCGCAAAGAACGTCACTGTCCACAAAACAATGAAAGATTAACATGTCTTATTCCTAAACCAATAGGGTACAAGAAGCCTTTTCCTTGGCCTAAGAGTAAGGACAATGCATGGTTTAGTAATGTTCCTTTTACTAAGCTTGTGGAATATAAAAAGTCACAAAATTGGATAAGGTTGGATGGTGACCGTTTTGTGTTTCCTGGTGGTGGTACTTCTTTTCCTGATGGTGTAAAGGGTTATGTTGATGATTTAAAGAAGCTTCTTCCTGTGAATTTAGAGTCTGGAAGGATTAGAACAGTTCTTGATGTTGGATGTGGGGTAGCAAGCTTTGGATCAGCTATGATGGACTATGATATATTGACAATGTCAATAGCACCAAGTGATGAACATGATGCTCAAGTGATGTTTGCACTTGAAAGAGGACTTCCTGCTATGCTTGGAGTATTCAGCACTCATAGGCTAACATTCCCTTCAAAATCATTTGATATGGCTCATTGCTCTAGATGCCTTGTCCCTTGGACTGCTAATGATGGACTATACCTAAGAGAGATTGACAGGATATTGCGTCCTGGCGGATTTTGGGTACTTTCTGGACCACCTATAAACTGGAGGGTTAACTATAAAGCATGGCAAACAGAGCCAACAGTGTTGGAAAAGGAACAGAACAGTTTAGAGGAACTTGCAATGCAAATGTGTTGGGAAAAAGTTGCTGAGGGAGGACAAATTGCTATATGGCAAAAACCAATAAATCATATAAAATGCATGCAAAAATTGAATACTTTGAGTTCTCCAAAGTTTTGCAATTCATCTGACTCTGATGCTGGATGCTATGAACTATTGAACAGGTATACAAAAATGACTGCATGCATTTTTCCTCTTCCAGAAGTGAAAGACATCGATGAAATCGCCGGCGGTGTTCTTGAGAAATGGCCTATAAGATTGAATGATTCACCACCAAGGTTGAGAAAAGAGAATGATGATGGTTTCACACTCAAAACCTATAGTGAAGATAATAGGATATGGAAAAAGAGATTATCTTACTATGAAGTCATGCTCAAATCACTCTCATCTGGTAAATATAGAAATGTTATGGATATGAATGCTGGCTTTGGTGGATTTGCAGCTGCAATGGTGAAATATCCAGTTTGGGTTATGAATGTTGTTCCGTTTGATTCAAAAAGCAACAATCTTGGCATTATTTATGAAAGAGGCCTCATAGGAACTTACATGGATTGGTGTGAGCCCTTTTCAACTTACCCAAGAACATATGACTTGATACATGCTTATGGCCTATTCAGTATGTATATTGACAAGTGTGACATTACTGATATTGTTATTGAGATGCATCGGATTCTTCGTCCAGAAGGAACTGTTATTATTAGAGACAGTAGAGATGTAATTTTGAAAGTAAAAGAAATAACAGATAGAATGAGATGGGAAGGAGGAATAGTAGTAGTTGCTGATGATCATAATGAATCTTCTCACCCAGAAATGATTATGGTTCTCAACAATAATACAAAGTAG

Protein sequence

>Msa1004210

MFSKYLNIFFITTLFIFLYITTSSFFTSPLTLHQQNSPTTTKQSHFEFCSTNYTNYCPCEDPKRQKKFPKKNYFRKERHCPQNNERLTCLIPKPIGYKKPFPWPKSKDNAWFSNVPFTKLVEYKKSQNWIRLDGDRFVFPGGGTSFPDGVKGYVDDLKKLLPVNLESGRIRTVLDVGCGVASFGSAMMDYDILTMSIAPSDEHDAQVMFALERGLPAMLGVFSTHRLTFPSKSFDMAHCSRCLVPWTANDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWQTEPTVLEKEQNSLEELAMQMCWEKVAEGGQIAIWQKPINHIKCMQKLNTLSSPKFCNSSDSDAGCYELLNRYTKMTACIFPLPEVKDIDEIAGGVLEKWPIRLNDSPPRLRKENDDGFTLKTYSEDNRIWKKRLSYYEVMLKSLSSGKYRNVMDMNAGFGGFAAAMVKYPVWVMNVVPFDSKSNNLGIIYERGLIGTYMDWCEPFSTYPRTYDLIHAYGLFSMYIDKCDITDIVIEMHRILRPEGTVIIRDSRDVILKVKEITDRMRWEGGIVVVADDHNESSHPEMIMVLNNNTK*