Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004270 | KEH17656.1 | 70.690 | 58 | 14 | 1 | 42 | 96 | 1 | 58 | 1.41e-16 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004270 | A0A072TKC9 | 70.690 | 58 | 14 | 1 | 42 | 96 | 1 | 58 | 6.75e-17 | 85.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0689760 | Msa1004270 | 0.801142 | 1.035136e-48 | -8.615850e-47 |
| Msa1004270 | Msa1341490 | 0.806573 | 7.705411e-50 | -8.615850e-47 |
| Msa1004270 | Msa1420250 | 0.802098 | 6.590475e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004270 | MtrunA17_Chr7g0231491 | 56.757 | 74 | 31 | 1 | 14 | 87 | 8 | 80 | 2.65e-20 | 82.4 |
| Msa1004270 | MtrunA17_Chr1g0167871 | 81.818 | 44 | 8 | 0 | 44 | 87 | 208 | 251 | 3.42e-19 | 81.6 |
| Msa1004270 | MtrunA17_Chr1g0172341 | 66.000 | 50 | 17 | 0 | 42 | 91 | 3 | 52 | 4.09e-19 | 76.3 |
| Msa1004270 | MtrunA17_Chr5g0393531 | 73.913 | 46 | 12 | 0 | 42 | 87 | 1 | 46 | 2.87e-18 | 76.6 |
| Msa1004270 | MtrunA17_Chr5g0393801 | 62.000 | 50 | 19 | 0 | 42 | 91 | 1 | 50 | 3.00e-17 | 71.2 |
| Msa1004270 | MtrunA17_Chr5g0420451 | 66.000 | 50 | 17 | 0 | 42 | 91 | 2 | 51 | 4.24e-17 | 73.6 |
| Msa1004270 | MtrunA17_Chr7g0214561 | 94.737 | 38 | 2 | 0 | 1 | 38 | 3 | 40 | 5.15e-17 | 74.7 |
| Msa1004270 | MtrunA17_Chr8g0372151 | 69.565 | 46 | 14 | 0 | 42 | 87 | 6 | 51 | 6.76e-17 | 72.8 |
| Msa1004270 | MtrunA17_Chr5g0426561 | 54.237 | 59 | 25 | 1 | 42 | 100 | 1 | 57 | 7.82e-17 | 68.9 |
| Msa1004270 | MtrunA17_Chr6g0453011 | 61.538 | 52 | 20 | 0 | 36 | 87 | 27 | 78 | 7.39e-16 | 68.2 |
| Msa1004270 | MtrunA17_Chr2g0304851 | 62.000 | 50 | 19 | 0 | 42 | 91 | 5 | 54 | 8.62e-16 | 71.6 |
| Msa1004270 | MtrunA17_Chr6g0481111 | 60.000 | 50 | 20 | 0 | 42 | 91 | 1 | 50 | 8.82e-16 | 68.2 |
| Msa1004270 | MtrunA17_Chr6g0464321 | 65.116 | 43 | 15 | 0 | 42 | 84 | 1 | 43 | 5.36e-15 | 65.5 |
| Msa1004270 | MtrunA17_Chr8g0347361 | 58.000 | 50 | 21 | 0 | 38 | 87 | 7 | 56 | 2.74e-14 | 65.9 |
| Msa1004270 | MtrunA17_Chr7g0223511 | 58.000 | 50 | 21 | 0 | 38 | 87 | 20 | 69 | 1.62e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTAATTGGTCTTGGTTT+AGG | 0.294867 | 7_1:+1670961 | Msa1004270:CDS |
| TGGACGAAGAACACGTTAAT+TGG | 0.301624 | 7_1:+1670949 | Msa1004270:CDS |
| TTAACGAGAAGAAGGACTTT+TGG | 0.326384 | 7_1:+1671853 | Msa1004270:CDS |
| TCCACGGGTCTGGGCTGTTC+CGG | 0.354375 | 7_1:-1672840 | None:intergenic |
| CTATTGAAGGTCCACGGGTC+TGG | 0.358128 | 7_1:-1672850 | None:intergenic |
| TCTCTTCTCATCACTGCTAC+TGG | 0.360410 | 7_1:+1670994 | Msa1004270:CDS |
| TGGTATATTAGTTGGTGAAA+TGG | 0.373892 | 7_1:+1671803 | Msa1004270:intron |
| TGATGGATATTAAGAAATAT+TGG | 0.402015 | 7_1:+1670929 | None:intergenic |
| TATTGAAGGTCCACGGGTCT+GGG | 0.422572 | 7_1:-1672849 | None:intergenic |
| AATTAAATTAGAACTATTGA+AGG | 0.464460 | 7_1:-1672863 | None:intergenic |
| CCATCTGTCCACCACCTTCA+CGG | 0.476943 | 7_1:-1671883 | None:intergenic |
| AAGAACACGTTAATTGGTCT+TGG | 0.480428 | 7_1:+1670955 | Msa1004270:CDS |
| GGAACGTTGTTAAGGATGGC+AGG | 0.490647 | 7_1:+1671904 | Msa1004270:CDS |
| TGGCAGGGAGCACTCTGAAA+TGG | 0.492223 | 7_1:+1671920 | Msa1004270:CDS |
| GGACAGATGGAACGTTGTTA+AGG | 0.499333 | 7_1:+1671896 | Msa1004270:CDS |
| TGCTGATCTTAACGAGAAGA+AGG | 0.516792 | 7_1:+1671845 | Msa1004270:CDS |
| AGATCAGCAATGAAAGAGAA+AGG | 0.547010 | 7_1:-1671831 | None:intergenic |
| ACCGGAACAGCCCAGACCCG+TGG | 0.547435 | 7_1:+1672839 | Msa1004270:CDS |
| GAAGCTTGCCGTGAAGGTGG+TGG | 0.553260 | 7_1:+1671875 | Msa1004270:CDS |
| TTAGAACTATTGAAGGTCCA+CGG | 0.571106 | 7_1:-1672856 | None:intergenic |
| TAGAACTATTGAAGGTCCAC+GGG | 0.578449 | 7_1:-1672855 | None:intergenic |
| CCGTGAAGGTGGTGGACAGA+TGG | 0.584316 | 7_1:+1671883 | Msa1004270:CDS |
| AGATGGAACGTTGTTAAGGA+TGG | 0.589873 | 7_1:+1671900 | Msa1004270:CDS |
| TTGGAAGCTTGCCGTGAAGG+TGG | 0.620796 | 7_1:+1671872 | Msa1004270:CDS |
| AATGGTCATTGTTGATGCAA+AGG | 0.627991 | 7_1:+1671938 | Msa1004270:CDS |
| GAACGTTGTTAAGGATGGCA+GGG | 0.634987 | 7_1:+1671905 | Msa1004270:CDS |
| ACAGTATGCTGATAGCAGAC+CGG | 0.661779 | 7_1:+1672821 | Msa1004270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAATGAAAGAAAATA+TGG | - | chr7_1:1672086-1672105 | None:intergenic | 10.0% |
| !!! | ATTTCAAAAAAAAATTGTTT+TGG | - | chr7_1:1672296-1672315 | None:intergenic | 10.0% |
| !! | TTTATATAAATTCTATGAAA+AGG | - | chr7_1:1672322-1672341 | None:intergenic | 10.0% |
| !! | TTTAATAATGAAAGAAAATA+TGG | - | chr7_1:1672086-1672105 | None:intergenic | 10.0% |
| !!! | ATTTCAAAAAAAAATTGTTT+TGG | - | chr7_1:1672296-1672315 | None:intergenic | 10.0% |
| !! | TTTATATAAATTCTATGAAA+AGG | - | chr7_1:1672322-1672341 | None:intergenic | 10.0% |
| !! | TGAAAAAAATGATAAACTTA+AGG | - | chr7_1:1671764-1671783 | None:intergenic | 15.0% |
| !! | ATATACCATGTAAAAATATA+TGG | - | chr7_1:1672024-1672043 | None:intergenic | 15.0% |
| !! | TGAAAAAAATGATAAACTTA+AGG | - | chr7_1:1671764-1671783 | None:intergenic | 15.0% |
| !! | ATATACCATGTAAAAATATA+TGG | - | chr7_1:1672024-1672043 | None:intergenic | 15.0% |
| !!! | TATCATAAAACATTTTCGAT+AGG | + | chr7_1:1671513-1671532 | Msa1004270:intron | 20.0% |
| !!! | AGTACTACTAACATTTTATA+TGG | - | chr7_1:1671714-1671733 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGGTATATTAGT+TGG | + | chr7_1:1671795-1671814 | Msa1004270:intron | 20.0% |
| !!! | TATCATAAAACATTTTCGAT+AGG | + | chr7_1:1671513-1671532 | Msa1004270:intron | 20.0% |
| !!! | AGTACTACTAACATTTTATA+TGG | - | chr7_1:1671714-1671733 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGGTATATTAGT+TGG | + | chr7_1:1671795-1671814 | Msa1004270:intron | 20.0% |
| ! | TCTTCTGATTTAGCTAAAAA+AGG | + | chr7_1:1671024-1671043 | Msa1004270:CDS | 25.0% |
| !!! | TCACTTCCTTTTAATTACTT+TGG | + | chr7_1:1671098-1671117 | Msa1004270:intron | 25.0% |
| ! | TCATGACCAAAGTAATTAAA+AGG | - | chr7_1:1671107-1671126 | None:intergenic | 25.0% |
| !!! | AACGTTTTTTCACAAACATA+GGG | - | chr7_1:1671205-1671224 | None:intergenic | 25.0% |
| !!! | AAACGTTTTTTCACAAACAT+AGG | - | chr7_1:1671206-1671225 | None:intergenic | 25.0% |
| ! | CGTGTCAAACATTAATTAAA+GGG | - | chr7_1:1671232-1671251 | None:intergenic | 25.0% |
| ! | ACGTGTCAAACATTAATTAA+AGG | - | chr7_1:1671233-1671252 | None:intergenic | 25.0% |
| ! | AGTGTAGAATTTGATTGATT+GGG | - | chr7_1:1671444-1671463 | None:intergenic | 25.0% |
| ! | AAGTGTAGAATTTGATTGAT+TGG | - | chr7_1:1671445-1671464 | None:intergenic | 25.0% |
| ! | GATATAATAGTGAAATGAGT+TGG | - | chr7_1:1671497-1671516 | None:intergenic | 25.0% |
| ! | AATGAATTCGAAAAATGAAG+GGG | - | chr7_1:1671628-1671647 | None:intergenic | 25.0% |
| ! | CAATGAATTCGAAAAATGAA+GGG | - | chr7_1:1671629-1671648 | None:intergenic | 25.0% |
| ! | ACAATGAATTCGAAAAATGA+AGG | - | chr7_1:1671630-1671649 | None:intergenic | 25.0% |
| !!! | GCTTTCCATATATTTTTACA+TGG | + | chr7_1:1672016-1672035 | Msa1004270:intron | 25.0% |
| ! | GTCATTATAAATCTGACAAA+AGG | - | chr7_1:1672164-1672183 | None:intergenic | 25.0% |
| !! | GTTGTTACATAATTTTTGCA+TGG | + | chr7_1:1672189-1672208 | Msa1004270:intron | 25.0% |
| !!! | TAATGTTTTTTCACTAGTAG+TGG | - | chr7_1:1672802-1672821 | None:intergenic | 25.0% |
| ! | TCTTCTGATTTAGCTAAAAA+AGG | + | chr7_1:1671024-1671043 | Msa1004270:CDS | 25.0% |
| !!! | TCACTTCCTTTTAATTACTT+TGG | + | chr7_1:1671098-1671117 | Msa1004270:intron | 25.0% |
| ! | TCATGACCAAAGTAATTAAA+AGG | - | chr7_1:1671107-1671126 | None:intergenic | 25.0% |
| !!! | AACGTTTTTTCACAAACATA+GGG | - | chr7_1:1671205-1671224 | None:intergenic | 25.0% |
| !!! | AAACGTTTTTTCACAAACAT+AGG | - | chr7_1:1671206-1671225 | None:intergenic | 25.0% |
| ! | CGTGTCAAACATTAATTAAA+GGG | - | chr7_1:1671232-1671251 | None:intergenic | 25.0% |
| ! | ACGTGTCAAACATTAATTAA+AGG | - | chr7_1:1671233-1671252 | None:intergenic | 25.0% |
| ! | AGTGTAGAATTTGATTGATT+GGG | - | chr7_1:1671444-1671463 | None:intergenic | 25.0% |
| ! | AAGTGTAGAATTTGATTGAT+TGG | - | chr7_1:1671445-1671464 | None:intergenic | 25.0% |
| ! | GATATAATAGTGAAATGAGT+TGG | - | chr7_1:1671497-1671516 | None:intergenic | 25.0% |
| ! | AATGAATTCGAAAAATGAAG+GGG | - | chr7_1:1671628-1671647 | None:intergenic | 25.0% |
| ! | CAATGAATTCGAAAAATGAA+GGG | - | chr7_1:1671629-1671648 | None:intergenic | 25.0% |
| ! | ACAATGAATTCGAAAAATGA+AGG | - | chr7_1:1671630-1671649 | None:intergenic | 25.0% |
| !!! | GCTTTCCATATATTTTTACA+TGG | + | chr7_1:1672016-1672035 | Msa1004270:intron | 25.0% |
| ! | GTCATTATAAATCTGACAAA+AGG | - | chr7_1:1672164-1672183 | None:intergenic | 25.0% |
| !! | GTTGTTACATAATTTTTGCA+TGG | + | chr7_1:1672189-1672208 | Msa1004270:intron | 25.0% |
| !!! | TAATGTTTTTTCACTAGTAG+TGG | - | chr7_1:1672802-1672821 | None:intergenic | 25.0% |
| !!! | ACGTTTTTTCACAAACATAG+GGG | - | chr7_1:1671204-1671223 | None:intergenic | 30.0% |
| GACAACATTTACCCATAAAT+AGG | - | chr7_1:1671258-1671277 | None:intergenic | 30.0% | |
| TGGTTGCAAAAAGCAAATTT+AGG | - | chr7_1:1671280-1671299 | None:intergenic | 30.0% | |
| TGCTGCAAACATATATGATT+TGG | - | chr7_1:1671300-1671319 | None:intergenic | 30.0% | |
| CATATATGTTTGCAGCAATT+CGG | + | chr7_1:1671303-1671322 | Msa1004270:intron | 30.0% | |
| !!! | ACTGCTAATCAGTTCTTTTT+TGG | + | chr7_1:1671783-1671802 | Msa1004270:intron | 30.0% |
| !! | TGGTATATTAGTTGGTGAAA+TGG | + | chr7_1:1671803-1671822 | Msa1004270:intron | 30.0% |
| AGCTTTCAGTTGTGAATATT+TGG | - | chr7_1:1672061-1672080 | None:intergenic | 30.0% | |
| AGCTTGAAGTTATGACTATT+TGG | - | chr7_1:1672234-1672253 | None:intergenic | 30.0% | |
| ATAAAACCAGGTTCAACTTA+TGG | - | chr7_1:1672259-1672278 | None:intergenic | 30.0% | |
| AGACTAAGACAAATAAAACC+AGG | - | chr7_1:1672271-1672290 | None:intergenic | 30.0% | |
| !!! | TTTCTTGCTGTTTCAAGTTT+TGG | - | chr7_1:1672612-1672631 | None:intergenic | 30.0% |
| CTTGAAATCAAGTTTGAAAG+TGG | - | chr7_1:1672639-1672658 | None:intergenic | 30.0% | |
| ! | TGTAAGGTATCCACATTTAA+GGG | - | chr7_1:1672699-1672718 | None:intergenic | 30.0% |
| ! | TTGTAAGGTATCCACATTTA+AGG | - | chr7_1:1672700-1672719 | None:intergenic | 30.0% |
| !!! | ACGTTTTTTCACAAACATAG+GGG | - | chr7_1:1671204-1671223 | None:intergenic | 30.0% |
| GACAACATTTACCCATAAAT+AGG | - | chr7_1:1671258-1671277 | None:intergenic | 30.0% | |
| TGGTTGCAAAAAGCAAATTT+AGG | - | chr7_1:1671280-1671299 | None:intergenic | 30.0% | |
| TGCTGCAAACATATATGATT+TGG | - | chr7_1:1671300-1671319 | None:intergenic | 30.0% | |
| CATATATGTTTGCAGCAATT+CGG | + | chr7_1:1671303-1671322 | Msa1004270:intron | 30.0% | |
| !!! | ACTGCTAATCAGTTCTTTTT+TGG | + | chr7_1:1671783-1671802 | Msa1004270:intron | 30.0% |
| !! | TGGTATATTAGTTGGTGAAA+TGG | + | chr7_1:1671803-1671822 | Msa1004270:intron | 30.0% |
| AGCTTTCAGTTGTGAATATT+TGG | - | chr7_1:1672061-1672080 | None:intergenic | 30.0% | |
| AGCTTGAAGTTATGACTATT+TGG | - | chr7_1:1672234-1672253 | None:intergenic | 30.0% | |
| ATAAAACCAGGTTCAACTTA+TGG | - | chr7_1:1672259-1672278 | None:intergenic | 30.0% | |
| AGACTAAGACAAATAAAACC+AGG | - | chr7_1:1672271-1672290 | None:intergenic | 30.0% | |
| !!! | TTTCTTGCTGTTTCAAGTTT+TGG | - | chr7_1:1672612-1672631 | None:intergenic | 30.0% |
| CTTGAAATCAAGTTTGAAAG+TGG | - | chr7_1:1672639-1672658 | None:intergenic | 30.0% | |
| ! | TGTAAGGTATCCACATTTAA+GGG | - | chr7_1:1672699-1672718 | None:intergenic | 30.0% |
| ! | TTGTAAGGTATCCACATTTA+AGG | - | chr7_1:1672700-1672719 | None:intergenic | 30.0% |
| ! | AAGAACACGTTAATTGGTCT+TGG | + | chr7_1:1670955-1670974 | Msa1004270:CDS | 35.0% |
| !! | ACGTTAATTGGTCTTGGTTT+AGG | + | chr7_1:1670961-1670980 | Msa1004270:CDS | 35.0% |
| GGGGATTCTTATATTAAGAG+AGG | - | chr7_1:1671185-1671204 | None:intergenic | 35.0% | |
| TTTGACACGTGTCCTATTTA+TGG | + | chr7_1:1671243-1671262 | Msa1004270:intron | 35.0% | |
| TTGACACGTGTCCTATTTAT+GGG | + | chr7_1:1671244-1671263 | Msa1004270:intron | 35.0% | |
| CACTTGTCAATTGCATTGTA+AGG | - | chr7_1:1671356-1671375 | None:intergenic | 35.0% | |
| AATTTGATTGATTGGGTGTC+TGG | - | chr7_1:1671437-1671456 | None:intergenic | 35.0% | |
| !! | GTGAAATGAGTTGGTAGTAT+TGG | - | chr7_1:1671488-1671507 | None:intergenic | 35.0% |
| TACTTGCTCTCTCATTTATC+TGG | + | chr7_1:1671571-1671590 | Msa1004270:intron | 35.0% | |
| TCGAATTCATTGTCCTGAAA+TGG | + | chr7_1:1671637-1671656 | Msa1004270:intron | 35.0% | |
| ! | GCAATTTGTTTCTCCATTTC+AGG | - | chr7_1:1671653-1671672 | None:intergenic | 35.0% |
| AGATCAGCAATGAAAGAGAA+AGG | - | chr7_1:1671834-1671853 | None:intergenic | 35.0% | |
| ! | TTAACGAGAAGAAGGACTTT+TGG | + | chr7_1:1671853-1671872 | Msa1004270:CDS | 35.0% |
| AATGGTCATTGTTGATGCAA+AGG | + | chr7_1:1671938-1671957 | Msa1004270:CDS | 35.0% | |
| ! | GTAAGGTATCCACATTTAAG+GGG | - | chr7_1:1672698-1672717 | None:intergenic | 35.0% |
| AAGTCTGTAATGTCCATGTA+AGG | - | chr7_1:1672735-1672754 | None:intergenic | 35.0% | |
| GACATTACAGACTTCAACAA+AGG | + | chr7_1:1672741-1672760 | Msa1004270:intron | 35.0% | |
| ! | CATTCTGTCATGGTTTTTCA+TGG | - | chr7_1:1672770-1672789 | None:intergenic | 35.0% |
| GAAAAACCATGACAGAATGA+CGG | + | chr7_1:1672771-1672790 | Msa1004270:intron | 35.0% | |
| ! | AAGAACACGTTAATTGGTCT+TGG | + | chr7_1:1670955-1670974 | Msa1004270:CDS | 35.0% |
| !! | ACGTTAATTGGTCTTGGTTT+AGG | + | chr7_1:1670961-1670980 | Msa1004270:CDS | 35.0% |
| GGGGATTCTTATATTAAGAG+AGG | - | chr7_1:1671185-1671204 | None:intergenic | 35.0% | |
| TTTGACACGTGTCCTATTTA+TGG | + | chr7_1:1671243-1671262 | Msa1004270:intron | 35.0% | |
| TTGACACGTGTCCTATTTAT+GGG | + | chr7_1:1671244-1671263 | Msa1004270:intron | 35.0% | |
| CACTTGTCAATTGCATTGTA+AGG | - | chr7_1:1671356-1671375 | None:intergenic | 35.0% | |
| AATTTGATTGATTGGGTGTC+TGG | - | chr7_1:1671437-1671456 | None:intergenic | 35.0% | |
| !! | GTGAAATGAGTTGGTAGTAT+TGG | - | chr7_1:1671488-1671507 | None:intergenic | 35.0% |
| TACTTGCTCTCTCATTTATC+TGG | + | chr7_1:1671571-1671590 | Msa1004270:intron | 35.0% | |
| TCGAATTCATTGTCCTGAAA+TGG | + | chr7_1:1671637-1671656 | Msa1004270:intron | 35.0% | |
| ! | GCAATTTGTTTCTCCATTTC+AGG | - | chr7_1:1671653-1671672 | None:intergenic | 35.0% |
| AGATCAGCAATGAAAGAGAA+AGG | - | chr7_1:1671834-1671853 | None:intergenic | 35.0% | |
| ! | TTAACGAGAAGAAGGACTTT+TGG | + | chr7_1:1671853-1671872 | Msa1004270:CDS | 35.0% |
| AATGGTCATTGTTGATGCAA+AGG | + | chr7_1:1671938-1671957 | Msa1004270:CDS | 35.0% | |
| ! | GTAAGGTATCCACATTTAAG+GGG | - | chr7_1:1672698-1672717 | None:intergenic | 35.0% |
| AAGTCTGTAATGTCCATGTA+AGG | - | chr7_1:1672735-1672754 | None:intergenic | 35.0% | |
| GACATTACAGACTTCAACAA+AGG | + | chr7_1:1672741-1672760 | Msa1004270:intron | 35.0% | |
| ! | CATTCTGTCATGGTTTTTCA+TGG | - | chr7_1:1672770-1672789 | None:intergenic | 35.0% |
| GAAAAACCATGACAGAATGA+CGG | + | chr7_1:1672771-1672790 | Msa1004270:intron | 35.0% | |
| TGGACGAAGAACACGTTAAT+TGG | + | chr7_1:1670949-1670968 | Msa1004270:CDS | 40.0% | |
| TGCTGATCTTAACGAGAAGA+AGG | + | chr7_1:1671845-1671864 | Msa1004270:CDS | 40.0% | |
| AGATGGAACGTTGTTAAGGA+TGG | + | chr7_1:1671900-1671919 | Msa1004270:CDS | 40.0% | |
| ! | AGCTTTCCATAAGTTGAACC+TGG | + | chr7_1:1672250-1672269 | Msa1004270:intron | 40.0% |
| !!! | TGGATATTTTGGTTGCCTTG+GGG | - | chr7_1:1672473-1672492 | None:intergenic | 40.0% |
| !!! | CTGGATATTTTGGTTGCCTT+GGG | - | chr7_1:1672474-1672493 | None:intergenic | 40.0% |
| !! | TGTGCTACTGCTGGATATTT+TGG | - | chr7_1:1672484-1672503 | None:intergenic | 40.0% |
| TTTCTTTGGTTGCACGAGTT+AGG | - | chr7_1:1672558-1672577 | None:intergenic | 40.0% | |
| ! | AGTCTGTTGGTTATTCTGGT+GGG | - | chr7_1:1672586-1672605 | None:intergenic | 40.0% |
| ! | AAGTCTGTTGGTTATTCTGG+TGG | - | chr7_1:1672587-1672606 | None:intergenic | 40.0% |
| ! | GTGAAGTCTGTTGGTTATTC+TGG | - | chr7_1:1672590-1672609 | None:intergenic | 40.0% |
| !! | CAAGTTTTGGTGAAGTCTGT+TGG | - | chr7_1:1672599-1672618 | None:intergenic | 40.0% |
| AGGCATGTTCTTGCTTTGTA+AGG | - | chr7_1:1672715-1672734 | None:intergenic | 40.0% | |
| AAGCAAGAACATGCCTTACA+TGG | + | chr7_1:1672719-1672738 | Msa1004270:intron | 40.0% | |
| TGGACGAAGAACACGTTAAT+TGG | + | chr7_1:1670949-1670968 | Msa1004270:CDS | 40.0% | |
| TGCTGATCTTAACGAGAAGA+AGG | + | chr7_1:1671845-1671864 | Msa1004270:CDS | 40.0% | |
| AGATGGAACGTTGTTAAGGA+TGG | + | chr7_1:1671900-1671919 | Msa1004270:CDS | 40.0% | |
| ! | AGCTTTCCATAAGTTGAACC+TGG | + | chr7_1:1672250-1672269 | Msa1004270:intron | 40.0% |
| !!! | TGGATATTTTGGTTGCCTTG+GGG | - | chr7_1:1672473-1672492 | None:intergenic | 40.0% |
| !!! | CTGGATATTTTGGTTGCCTT+GGG | - | chr7_1:1672474-1672493 | None:intergenic | 40.0% |
| !! | TGTGCTACTGCTGGATATTT+TGG | - | chr7_1:1672484-1672503 | None:intergenic | 40.0% |
| TTTCTTTGGTTGCACGAGTT+AGG | - | chr7_1:1672558-1672577 | None:intergenic | 40.0% | |
| ! | AGTCTGTTGGTTATTCTGGT+GGG | - | chr7_1:1672586-1672605 | None:intergenic | 40.0% |
| ! | AAGTCTGTTGGTTATTCTGG+TGG | - | chr7_1:1672587-1672606 | None:intergenic | 40.0% |
| ! | GTGAAGTCTGTTGGTTATTC+TGG | - | chr7_1:1672590-1672609 | None:intergenic | 40.0% |
| !! | CAAGTTTTGGTGAAGTCTGT+TGG | - | chr7_1:1672599-1672618 | None:intergenic | 40.0% |
| AGGCATGTTCTTGCTTTGTA+AGG | - | chr7_1:1672715-1672734 | None:intergenic | 40.0% | |
| AAGCAAGAACATGCCTTACA+TGG | + | chr7_1:1672719-1672738 | Msa1004270:intron | 40.0% | |
| TCTCTTCTCATCACTGCTAC+TGG | + | chr7_1:1670994-1671013 | Msa1004270:CDS | 45.0% | |
| GATTGATTGGGTGTCTGGAA+AGG | - | chr7_1:1671432-1671451 | None:intergenic | 45.0% | |
| GGACAGATGGAACGTTGTTA+AGG | + | chr7_1:1671896-1671915 | Msa1004270:CDS | 45.0% | |
| GAACGTTGTTAAGGATGGCA+GGG | + | chr7_1:1671905-1671924 | Msa1004270:CDS | 45.0% | |
| !!! | GCTGGATATTTTGGTTGCCT+TGG | - | chr7_1:1672475-1672494 | None:intergenic | 45.0% |
| ! | TTTGTGTTGTGTGCTACTGC+TGG | - | chr7_1:1672493-1672512 | None:intergenic | 45.0% |
| TCACAGCTTCCCCTTAAATG+TGG | + | chr7_1:1672686-1672705 | Msa1004270:intron | 45.0% | |
| GTAAGACCGTCATTCTGTCA+TGG | - | chr7_1:1672780-1672799 | None:intergenic | 45.0% | |
| ACAGTATGCTGATAGCAGAC+CGG | + | chr7_1:1672821-1672840 | Msa1004270:CDS | 45.0% | |
| TCTCTTCTCATCACTGCTAC+TGG | + | chr7_1:1670994-1671013 | Msa1004270:CDS | 45.0% | |
| GATTGATTGGGTGTCTGGAA+AGG | - | chr7_1:1671432-1671451 | None:intergenic | 45.0% | |
| GGACAGATGGAACGTTGTTA+AGG | + | chr7_1:1671896-1671915 | Msa1004270:CDS | 45.0% | |
| GAACGTTGTTAAGGATGGCA+GGG | + | chr7_1:1671905-1671924 | Msa1004270:CDS | 45.0% | |
| !!! | GCTGGATATTTTGGTTGCCT+TGG | - | chr7_1:1672475-1672494 | None:intergenic | 45.0% |
| ! | TTTGTGTTGTGTGCTACTGC+TGG | - | chr7_1:1672493-1672512 | None:intergenic | 45.0% |
| TCACAGCTTCCCCTTAAATG+TGG | + | chr7_1:1672686-1672705 | Msa1004270:intron | 45.0% | |
| GTAAGACCGTCATTCTGTCA+TGG | - | chr7_1:1672780-1672799 | None:intergenic | 45.0% | |
| ACAGTATGCTGATAGCAGAC+CGG | + | chr7_1:1672821-1672840 | Msa1004270:CDS | 45.0% | |
| !! | CTTTTGGAAGCTTGCCGTGA+AGG | + | chr7_1:1671869-1671888 | Msa1004270:CDS | 50.0% |
| GGAACGTTGTTAAGGATGGC+AGG | + | chr7_1:1671904-1671923 | Msa1004270:CDS | 50.0% | |
| GAGTTAGGTGCGAAGGAGTT+AGG | - | chr7_1:1672543-1672562 | None:intergenic | 50.0% | |
| ! | TCTGGTGGGAGGCTTTTCTT+TGG | - | chr7_1:1672572-1672591 | None:intergenic | 50.0% |
| ! | CTGTTGGTTATTCTGGTGGG+AGG | - | chr7_1:1672583-1672602 | None:intergenic | 50.0% |
| TATTGAAGGTCCACGGGTCT+GGG | - | chr7_1:1672852-1672871 | None:intergenic | 50.0% | |
| !! | CTTTTGGAAGCTTGCCGTGA+AGG | + | chr7_1:1671869-1671888 | Msa1004270:CDS | 50.0% |
| GGAACGTTGTTAAGGATGGC+AGG | + | chr7_1:1671904-1671923 | Msa1004270:CDS | 50.0% | |
| GAGTTAGGTGCGAAGGAGTT+AGG | - | chr7_1:1672543-1672562 | None:intergenic | 50.0% | |
| ! | TCTGGTGGGAGGCTTTTCTT+TGG | - | chr7_1:1672572-1672591 | None:intergenic | 50.0% |
| ! | CTGTTGGTTATTCTGGTGGG+AGG | - | chr7_1:1672583-1672602 | None:intergenic | 50.0% |
| TATTGAAGGTCCACGGGTCT+GGG | - | chr7_1:1672852-1672871 | None:intergenic | 50.0% | |
| TTGGAAGCTTGCCGTGAAGG+TGG | + | chr7_1:1671872-1671891 | Msa1004270:CDS | 55.0% | |
| CCATCTGTCCACCACCTTCA+CGG | - | chr7_1:1671886-1671905 | None:intergenic | 55.0% | |
| !! | TGGCAGGGAGCACTCTGAAA+TGG | + | chr7_1:1671920-1671939 | Msa1004270:CDS | 55.0% |
| GTTGCACGAGTTAGGTGCGA+AGG | - | chr7_1:1672550-1672569 | None:intergenic | 55.0% | |
| CTATTGAAGGTCCACGGGTC+TGG | - | chr7_1:1672853-1672872 | None:intergenic | 55.0% | |
| TTGGAAGCTTGCCGTGAAGG+TGG | + | chr7_1:1671872-1671891 | Msa1004270:CDS | 55.0% | |
| CCATCTGTCCACCACCTTCA+CGG | - | chr7_1:1671886-1671905 | None:intergenic | 55.0% | |
| !! | TGGCAGGGAGCACTCTGAAA+TGG | + | chr7_1:1671920-1671939 | Msa1004270:CDS | 55.0% |
| GTTGCACGAGTTAGGTGCGA+AGG | - | chr7_1:1672550-1672569 | None:intergenic | 55.0% | |
| CTATTGAAGGTCCACGGGTC+TGG | - | chr7_1:1672853-1672872 | None:intergenic | 55.0% | |
| GAAGCTTGCCGTGAAGGTGG+TGG | + | chr7_1:1671875-1671894 | Msa1004270:CDS | 60.0% | |
| !! | CCGTGAAGGTGGTGGACAGA+TGG | + | chr7_1:1671883-1671902 | Msa1004270:CDS | 60.0% |
| GAAGCTTGCCGTGAAGGTGG+TGG | + | chr7_1:1671875-1671894 | Msa1004270:CDS | 60.0% | |
| !! | CCGTGAAGGTGGTGGACAGA+TGG | + | chr7_1:1671883-1671902 | Msa1004270:CDS | 60.0% |
| TCCACGGGTCTGGGCTGTTC+CGG | - | chr7_1:1672843-1672862 | None:intergenic | 65.0% | |
| TCCACGGGTCTGGGCTGTTC+CGG | - | chr7_1:1672843-1672862 | None:intergenic | 65.0% | |
| ACCGGAACAGCCCAGACCCG+TGG | + | chr7_1:1672839-1672858 | Msa1004270:CDS | 70.0% | |
| ACCGGAACAGCCCAGACCCG+TGG | + | chr7_1:1672839-1672858 | Msa1004270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 1670931 | 1672872 | 1670931 | ID=Msa1004270;Name=Msa1004270 |
| chr7_1 | mRNA | 1670931 | 1672872 | 1670931 | ID=Msa1004270-mRNA-1;Parent=Msa1004270;Name=Msa1004270-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.33|1|1|3|0|115 |
| chr7_1 | exon | 1670931 | 1671045 | 1670931 | ID=Msa1004270-mRNA-1:exon:657;Parent=Msa1004270-mRNA-1 |
| chr7_1 | exon | 1671814 | 1671959 | 1671814 | ID=Msa1004270-mRNA-1:exon:658;Parent=Msa1004270-mRNA-1 |
| chr7_1 | exon | 1672786 | 1672872 | 1672786 | ID=Msa1004270-mRNA-1:exon:659;Parent=Msa1004270-mRNA-1 |
| chr7_1 | CDS | 1670931 | 1671045 | 1670931 | ID=Msa1004270-mRNA-1:cds;Parent=Msa1004270-mRNA-1 |
| chr7_1 | CDS | 1671814 | 1671959 | 1671814 | ID=Msa1004270-mRNA-1:cds;Parent=Msa1004270-mRNA-1 |
| chr7_1 | CDS | 1672786 | 1672872 | 1672786 | ID=Msa1004270-mRNA-1:cds;Parent=Msa1004270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
