AlfalfaGEDB | Msa0689760

M. sativa cultivar zhongmu-4 / Msa0689760

KEGG: K20183
GO: GO:0000323 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009506 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030054 GO:0030897 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032991 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061919 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0098876 GO:0099023 GO:1902774 GO:1990126
PFAM: PF00780.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689760	XP_024639644.1	94.747	990	14	2	1	962	1	980	0.0	1899

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689760	sp\|Q8L5Y0\|VPS39_ARATH	66.963	1011	274	13	1	962	1	1000	0.0	1326

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689760	A0A396HP19	94.747	990	14	2	1	962	1	980	0.0	1899

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0689760	0.827049	1.938963e-54	-8.615850e-47
Msa0002560	Msa0689760	0.834676	2.611450e-56	-8.615850e-47
Msa0002680	Msa0689760	0.882627	8.886114e-71	-8.615850e-47
Msa0002710	Msa0689760	0.856773	2.563956e-62	-8.615850e-47
Msa0003220	Msa0689760	0.894120	3.324033e-75	-8.615850e-47
Msa0003270	Msa0689760	0.829802	4.198157e-55	-8.615850e-47
Msa0005000	Msa0689760	-0.814743	1.319023e-51	-8.615850e-47
Msa0005270	Msa0689760	0.811822	5.775162e-51	-8.615850e-47
Msa0005620	Msa0689760	0.861887	7.481323e-64	-8.615850e-47
Msa0006110	Msa0689760	0.820714	5.928370e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689760	MtrunA17_Chr5g0404061	94.747	990	14	2	1	962	1	980	0.0	1899
Msa0689760	MtrunA17_Chr8g0373371	69.378	1045	219	10	1	961	1	1028	0.0	1420
Msa0689760	MtrunA17_Chr8g0370071	98.387	62	1	0	489	550	1	62	2.16e-34	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689760	AT4G36630.1	66.963	1011	274	13	1	962	1	1000	0.0	1326
Msa0689760	AT4G36630.2	66.851	902	249	12	1	853	1	901	0.0	1184

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Find 201 sgRNAs with CRISPR-Local

Find 707 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCAATAGTTTGGGA+TGG	0.580220	4_4:+56978050	None:intergenic
AAAATGAAAGCAGTGACCAA+AGG	0.587095	4_4:-56976103	Msa0689760:CDS
AAACATGCAAGCTAAGTACT+TGG	0.495926	4_4:-56977970	Msa0689760:CDS
AAAGAAAATTGCGGAGATTG+AGG	0.486392	4_4:-56976985	Msa0689760:CDS
AAATATTTGCAGAAGAAGAG+AGG	0.627160	4_4:-56980043	Msa0689760:CDS
AAATGAAAGCAGTGACCAAA+GGG	0.529020	4_4:-56976102	Msa0689760:CDS
AAATTATTGTCGGCTTTAGA+AGG	0.375333	4_4:-56977563	Msa0689760:CDS
AAATTGTGGATGTAGGTGGT+AGG	0.570289	4_4:-56984730	Msa0689760:intron
AACACTTCCATTGAAACAAC+AGG	0.413460	4_4:+56985495	None:intergenic
AACGAATCATAATATGCTTA+TGG	0.346723	4_4:-56980074	Msa0689760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCATAGATTACCTAGTT+TGG	-	chr4_4:56976344-56976363	Msa0689760:intron	30.0%
AGATTATGGATCATAAACAC+CGG	-	chr4_4:56976528-56976547	Msa0689760:intron	30.0%
TCTATCTTACAGATTACTAC+AGG	+	chr4_4:56976582-56976601	None:intergenic	30.0%
AATGCTTTCATAAGCTATCT+TGG	-	chr4_4:56976745-56976764	Msa0689760:intron	30.0%
TCAAATAAGCTAATCCAAAC+AGG	-	chr4_4:56976907-56976926	Msa0689760:CDS	30.0%
ATATATGTTTGGGGATTAGA+AGG	-	chr4_4:56977134-56977153	Msa0689760:CDS	30.0%
TATATGTTTGGGGATTAGAA+GGG	-	chr4_4:56977135-56977154	Msa0689760:CDS	30.0%
GTGGATCTATGTTCTTTATA+TGG	-	chr4_4:56977601-56977620	Msa0689760:CDS	30.0%
ATTATCCAAAGCAAGTATCA+CGG	+	chr4_4:56977723-56977742	None:intergenic	30.0%
TAACAGTATATACAGTACCT+GGG	+	chr4_4:56977780-56977799	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	56976081	56985715	56976081	ID=Msa0689760;Name=Msa0689760
chr4_4	mRNA	56976081	56985715	56976081	ID=Msa0689760-mRNA-1;Parent=Msa0689760;Name=Msa0689760-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.81\|0.83\|1\|1\|1\|12\|0\|962
chr4_4	exon	56985400	56985715	56985400	ID=Msa0689760-mRNA-1:exon:15175;Parent=Msa0689760-mRNA-1
chr4_4	exon	56984526	56984737	56984526	ID=Msa0689760-mRNA-1:exon:15174;Parent=Msa0689760-mRNA-1
chr4_4	exon	56984250	56984381	56984250	ID=Msa0689760-mRNA-1:exon:15173;Parent=Msa0689760-mRNA-1
chr4_4	exon	56984015	56984158	56984015	ID=Msa0689760-mRNA-1:exon:15172;Parent=Msa0689760-mRNA-1
chr4_4	exon	56983685	56983797	56983685	ID=Msa0689760-mRNA-1:exon:15171;Parent=Msa0689760-mRNA-1
chr4_4	exon	56979940	56980348	56979940	ID=Msa0689760-mRNA-1:exon:15170;Parent=Msa0689760-mRNA-1
chr4_4	exon	56979261	56979584	56979261	ID=Msa0689760-mRNA-1:exon:15169;Parent=Msa0689760-mRNA-1
chr4_4	exon	56977914	56978135	56977914	ID=Msa0689760-mRNA-1:exon:15168;Parent=Msa0689760-mRNA-1
chr4_4	exon	56977436	56977678	56977436	ID=Msa0689760-mRNA-1:exon:15167;Parent=Msa0689760-mRNA-1
chr4_4	exon	56976797	56977240	56976797	ID=Msa0689760-mRNA-1:exon:15166;Parent=Msa0689760-mRNA-1
chr4_4	exon	56976533	56976631	56976533	ID=Msa0689760-mRNA-1:exon:15165;Parent=Msa0689760-mRNA-1
chr4_4	exon	56976081	56976311	56976081	ID=Msa0689760-mRNA-1:exon:15164;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56985400	56985715	56985400	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56984526	56984737	56984526	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56984250	56984381	56984250	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56984015	56984158	56984015	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56983685	56983797	56983685	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56979940	56980348	56979940	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56979261	56979584	56979261	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56977914	56978135	56977914	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56977436	56977678	56977436	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56976797	56977240	56976797	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56976533	56976631	56976533	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1
chr4_4	CDS	56976081	56976311	56976081	ID=Msa0689760-mRNA-1:cds;Parent=Msa0689760-mRNA-1

Gene Sequence

>Msa0689760

ATGGTGCACAGTGCGTACGATAGTTTCGAACTCGTTCCCAATTTCAACGGCAAGATCGAATCCATCGAATCCTACGGTTCAAAACTCTTACTCGGTTGCTCCGATGGATCTCTCCGAATCTACTCGCCGGAAACAGAATTCTCCGATCATTCCAAACCTTACACACTCGAGAAGAATCTCGCTAATTTTGCGAAGAAGCCTGTTGTTTCAATGGAAGTGTTGGAATCAAGAGAGCTTCTTTTATCGCTTTCTGAATCAATCGCGTTTCATAGATTACCTAGTTTGGAAACTATAGCGGTTATTACCAAAGCTAAAGGTGGTAGGGGGTTTGTGGAGGTGAAAGAGTTTGGTGTACCGGACATGGTGAAGTCCATGAGTTGGTGTGGGGAGAATATATGTTTGGGGATTAGAAGGGAATATGTGATTTTGAATGCTTCAAATGGTGCTTTGTCCGAGGTTTTTACTTCTGGGAGACTAGCGCCGCCTTTAGTAGTGCCTATTCCGTCGGGAGAGCTGCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGCAGGATTTGTTGGTCAGAGGCACCCTTGGAAGTCGTGATTCAGAAGCCGTATGCTATAGCTTTGCTGCCTAGATTCGTGGAGATTCGATCTCTTCGACAACCTTATCCGTTGATACAAACTATTGTTCTTCGCAATGTTCGTCATCTTTGCCAAAGCAGTAACTCCGTGATACTTGCTTTGGATAATTCTATTCAAGGTCTCTTTCCGGTTCCTCTTGGAGCCCAGATTGTCCAACTAACTGCTTCTGGAAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTGCTTCCACCTGAAGATTCAAGTCTACGTGCTGCAAAAGAGGGATCAATTCATATAAGATATGCCCACTATCTTTTTGAAAATGGGAGCTATGAGGAGGCTGTGGAACATTTTCTAGAATCTCAAGTAGATATAACCTATGTGCTTTCTCTTTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGTTGGACATTGATGGGGATGATTCCTATCTTTCCAGAGTTTCGTCAGGTGTTTCAGATGATATGGAACCCTTACCAACCGACGAGAATGCAGCACTTGAATCCAAAAAAACGAATCATAATATGCTTATGGCTCTCATAAAATATTTGCAGAAGAAGAGAGGTAATTTTATTGAGAAGGCTACTGCGGAGGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGCGATAACTATGCATCCTACAATAGGTTTAAAAAAGTAAACAAGGGGCGTGGTAATATTTCGGTTGGTTCTGGAGCTCGGGAGATGGCTTCAATATTAGACACTGCTCTACTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCAGCTTTAGAAATACTAAGAGGTGTTAATTACTGCGATATGAAAATATGTGAAGAAATACTTCGAAAAGGCAATCTTAATGCTGCTTTATTAGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGTTGGTGGAAGAGTCAAGATCTAGCCAGTCTGAAATTACACAAAGGTTCAAGCCTGAGGACATTGTTGAGTATCTCAAGCCGCTATGTGAGACGGATCCCATACTTGTTCTGGAATTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTTTTTCTGTCTGGAAATATACCAGCTGATATGGTGAACTCATATTTGAAGCAGCACTCTCCAAACATGCAAGCTAAGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCCATATCTGGCAATCTGCAAAATGAAATGGTAAACATCTACCTATCTGACGTACTTGATTGGCATGCCGACTTAAATGCTCAACAAAATTGGGACGAGAAAACTTATACCCCAACTAGGAAAAAATTATTGTCGGCTTTAGAAGGCATATCGGGATACAATCCAGAGGCTCTGCTGAAACGTCTTCCTCAAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAACATGAACTGGCATTGTCTCTGTATGTTCATAAGCTTCATGTTCCAGAATTGGCATTATCATATTGTGATCGGGTGTACGAGTCCATGCATCAGCCATCTCTAAAAAAATCTAGCAACATATACCTATTGCTTATGCAAATCTATTTGAATCCTCGAAAGACCACAGCAAGCTTTGAAATGAGAATTACAAATCTATTATCCCCACAAAATACAGCCATTTCTAGAGGTAGTGCACCATCTGTAAAAAGTAAAGGGGGCCGAGGATCAAAGAAAATTGCGGAGATTGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACCGACAGTAGCAAGAGTGATGGTGATGCGGATGAATTTAATGAGGGTGACTCTACTATCATGCTTGATGAGGTCCTTGATCTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCGAGGGAGACTAAGTTACAGGATTTGCAATCATTTCTTGGGCCTCTTTTGAGAAAATCTAGTGAAATGTACCGTAACTGTTCAGTGATCAAGAGCTTGCGACAGAGCGAAAACCTTCAGCAAGAGCATGATTCAATTGGTTTTGCACAGGTGAAAGATGAACTGTATAGTCAGAGGAAAGCAGTTGTGAAGGTAACCAGCGATAGCATGTGTTCTCTGTGCCGAAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCCAACGGGAGCACTCTCGTGCACTTTGTCTGTTTTAAAGATTCTCAAAAAATGAAAGCAGTGACCAAAGGGTCTCAGTTGAGAAAGCGATGA

Protein sequence

>Msa0689760

MVHSAYDSFELVPNFNGKIESIESYGSKLLLGCSDGSLRIYSPETEFSDHSKPYTLEKNLANFAKKPVVSMEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGGRGFVEVKEFGVPDMVKSMSWCGENICLGIRREYVILNASNGALSEVFTSGRLAPPLVVPIPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHLCQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFENGSYEEAVEHFLESQVDITYVLSLYPSIILPKTTIVHEPEKLDIDGDDSYLSRVSSGVSDDMEPLPTDENAALESKKTNHNMLMALIKYLQKKRGNFIEKATAEGTEEVVLDAVGDNYASYNRFKKVNKGRGNISVGSGAREMASILDTALLQALLLTGQSSAALEILRGVNYCDMKICEEILRKGNLNAALLELYKCKSLHRQALELLHKLVEESRSSQSEITQRFKPEDIVEYLKPLCETDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQAKYLELMLAMNENAISGNLQNEMVNIYLSDVLDWHADLNAQQNWDEKTYTPTRKKLLSALEGISGYNPEALLKRLPQDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYESMHQPSLKKSSNIYLLLMQIYLNPRKTTASFEMRITNLLSPQNTAISRGSAPSVKSKGGRGSKKIAEIEGAEDTKVSLSSTDSSKSDGDADEFNEGDSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLQSFLGPLLRKSSEMYRNCSVIKSLRQSENLQQEHDSIGFAQVKDELYSQRKAVVKVTSDSMCSLCRKKIGTSVFAVYPNGSTLVHFVCFKDSQKMKAVTKGSQLRKR*