AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004360 MtrunA17_Chr7g0214561 95.480 177 8 0 3 179 41 217 1.34e-121 348
Msa1004360 MtrunA17_Chr7g0214561 82.456 57 7 1 163 216 288 344 1.45e-24 99.0
Msa1004360 MtrunA17_Chr7g0266091 52.023 173 81 1 3 173 46 218 4.91e-55 177
Msa1004360 MtrunA17_Chr7g0266101 52.414 145 66 1 3 144 46 190 3.04e-42 146
Msa1004360 MtrunA17_Chr7g0214571 88.732 71 8 0 55 125 252 322 9.13e-38 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004360 AT3G59310.1 73.889 180 47 0 3 182 41 220 9.38e-95 280
Msa1004360 AT3G59310.2 73.889 180 47 0 3 182 41 220 1.74e-94 280
Msa1004360 AT3G59310.3 77.059 170 39 0 3 172 41 210 9.50e-94 277
Msa1004360 AT3G59330.3 75.000 172 41 1 1 172 66 235 5.11e-91 268
Msa1004360 AT3G59330.2 71.429 182 43 2 2 183 67 239 9.42e-91 267
Msa1004360 AT3G59340.1 69.444 180 55 0 3 182 44 223 4.60e-90 268
Msa1004360 AT3G59340.2 69.444 180 55 0 3 182 71 250 6.44e-90 269
Msa1004360 AT3G59340.3 69.444 180 55 0 3 182 71 250 6.44e-90 269
Msa1004360 AT3G59340.4 69.444 180 55 0 3 182 71 250 6.44e-90 269
Msa1004360 AT3G59330.1 72.674 172 36 1 1 172 66 226 2.86e-86 255
Msa1004360 AT3G59320.1 75.309 162 40 0 3 164 42 203 3.73e-78 238
Msa1004360 AT3G59320.2 77.451 102 23 0 63 164 1 102 5.06e-45 150

Find 71 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTATTTGTTGAAATTT+AGG 0.132074 7_1:-1851849 Msa1004360:three_prime_UTR
AATAGATTTCGTATTCTATT+TGG 0.186925 7_1:+1851796 None:intergenic
TTTAAATTTAGACGATTTAA+AGG 0.189353 7_1:+1856181 None:intergenic
CAGCAATAATAGTGTGTTAT+TGG 0.197604 7_1:-1851747 Msa1004360:three_prime_UTR
TGCTTCTTGCATTGCACTCT+TGG 0.249507 7_1:+1851924 None:intergenic
GAATAAGCAAGCACCTTTAG+AGG 0.281729 7_1:+1855902 None:intergenic
CTGAAAGAGGCTCTTCTTCA+TGG 0.285624 7_1:+1851982 None:intergenic
TGGTACTATTATATACTTCT+TGG 0.287931 7_1:-1855143 Msa1004360:CDS
ATGGCAATGTTAGGTCTCTT+TGG 0.309096 7_1:-1853659 Msa1004360:CDS
TCGTCGTATTGCAGAGGTTT+TGG 0.323324 7_1:-1852167 Msa1004360:intron
TTTGCTATGAGTTGCTGAAC+TGG 0.331987 7_1:+1852079 None:intergenic
TTGCATGTCTTATCATTTGA+AGG 0.332809 7_1:-1851539 Msa1004360:three_prime_UTR
CATGCGTCATGCTGCTTACA+TGG 0.358791 7_1:-1854652 Msa1004360:CDS
AACGCTACAATTTGTAGCTT+CGG 0.381029 7_1:-1851638 Msa1004360:three_prime_UTR
TATAGATTCAAGAAGATAAC+TGG 0.382296 7_1:-1854611 Msa1004360:CDS
AGAAGAGCCTCTTTCAGAAA+TGG 0.384499 7_1:-1851976 Msa1004360:three_prime_UTR
TCATCCTGTCTGATTGCAAC+AGG 0.386095 7_1:+1852107 None:intergenic
GGTGGAAGTAATCCTCGTTT+AGG 0.403367 7_1:-1854334 Msa1004360:CDS
CCGTGCATCCGCACGGGTAC+TGG 0.404247 7_1:+1856103 None:intergenic
GGTGTAATTGTTTGCATAGC+CGG 0.409701 7_1:-1854590 Msa1004360:CDS
CATAGCAAAGGAAATGTGTC+TGG 0.413561 7_1:-1852065 Msa1004360:CDS
GAATAGCCCATTTCTGAAAG+AGG 0.414593 7_1:+1851969 None:intergenic
GAAGAGCTCATGGCAATGTT+AGG 0.420524 7_1:-1853668 Msa1004360:CDS
AACAAGATAACTGCTATGAT+TGG 0.422559 7_1:+1851561 None:intergenic
TTCTTGCATTGCACTCTTGG+AGG 0.434118 7_1:+1851927 None:intergenic
CTATTATATACTTCTTGGAT+TGG 0.443539 7_1:-1855138 Msa1004360:CDS
TGTTTCTAATACAGGCGAAA+TGG 0.446396 7_1:-1855163 Msa1004360:intron
GAAGAGCCTCTTTCAGAAAT+GGG 0.456696 7_1:-1851975 Msa1004360:three_prime_UTR
CTTTCAAGGATACATTTGAA+TGG 0.460817 7_1:+1853622 None:intergenic
GGTTCTTCAACAGCATTAGC+AGG 0.462571 7_1:+1852128 None:intergenic
CCAGTACCCGTGCGGATGCA+CGG 0.483044 7_1:-1856103 Msa1004360:five_prime_UTR
TTTAGAAAGGACTGTGATGT+TGG 0.485502 7_1:+1855977 None:intergenic
AGATTTCGTATTCTATTTGG+TGG 0.493197 7_1:+1851799 None:intergenic
TTATTTGTTGAAATTTAGGT+TGG 0.496495 7_1:-1851845 Msa1004360:three_prime_UTR
GGAGACGTTCTTGTTATCGC+TGG 0.498105 7_1:-1854313 Msa1004360:CDS
TGTCTTATCATTTGAAGGCT+CGG 0.499174 7_1:-1851534 Msa1004360:three_prime_UTR
CTACAGAAGAAAGCCTCTAA+AGG 0.503377 7_1:-1855915 Msa1004360:intron
CAGTACCCGTGCGGATGCAC+GGG 0.506756 7_1:-1856102 Msa1004360:five_prime_UTR
GCACGGGTACTGGTTGGTCG+TGG 0.526000 7_1:+1856113 None:intergenic
CACCTTATGAACAGTTGTGA+AGG 0.528488 7_1:-1854729 Msa1004360:intron
GATTTCGTATTCTATTTGGT+GGG 0.534105 7_1:+1851800 None:intergenic
GCAATGTTAGGTCTCTTTGG+TGG 0.537905 7_1:-1853656 Msa1004360:CDS
TATACTTTCTTAAGCTACCC+AGG 0.539167 7_1:+1852031 None:intergenic
TGTTGCAATCAGACAGGATG+AGG 0.549578 7_1:-1852105 Msa1004360:CDS
GACATTACTGAATGCATACA+AGG 0.557186 7_1:+1854285 None:intergenic
GTGTGATGCTACTTGACTGC+TGG 0.567229 7_1:-1854682 Msa1004360:CDS
AGCTTAAGAAAGTATAGACC+TGG 0.578972 7_1:-1852024 Msa1004360:exon
TGCTGATAGAGAAGAGCTCA+TGG 0.583244 7_1:-1853678 Msa1004360:CDS
TCTCGATGGAATTTGTCATG+TGG 0.585386 7_1:-1851504 Msa1004360:three_prime_UTR
AGAACCTGTTGCAATCAGAC+AGG 0.585681 7_1:-1852111 Msa1004360:CDS
AAGCAGCATGACGCATGGAA+TGG 0.591362 7_1:+1854658 None:intergenic
ACTTCTTGGATTGGTTGATG+TGG 0.592336 7_1:-1855129 Msa1004360:CDS
CATGTAAGCAGCATGACGCA+TGG 0.595629 7_1:+1854653 None:intergenic
AACATACCCGTGCATCCGCA+CGG 0.603671 7_1:+1856096 None:intergenic
GCATCCGCACGGGTACTGGT+TGG 0.609533 7_1:+1856107 None:intergenic
AAATACAACTAGGACAAGGC+CGG 0.612279 7_1:+1854571 None:intergenic
ATAGCAAAGGAAATGTGTCT+GGG 0.615099 7_1:-1852064 Msa1004360:CDS
AGTTCAGCAACTCATAGCAA+AGG 0.620241 7_1:-1852077 Msa1004360:CDS
ATTGGGATGCGATAAATCAA+AGG 0.622552 7_1:-1851595 Msa1004360:three_prime_UTR
GTTCATGCTGGTGACCGTGC+AGG 0.625656 7_1:-1854542 Msa1004360:intron
GTTCTTCAACAGCATTAGCA+GGG 0.626050 7_1:+1852129 None:intergenic
TAGCATCACACTTGTAAGTG+AGG 0.628131 7_1:+1854694 None:intergenic
TATAAAGCCACCTACCTGCA+CGG 0.642251 7_1:+1854528 None:intergenic
ACATACCCGTGCATCCGCAC+GGG 0.647203 7_1:+1856097 None:intergenic
GAACATCCGAAAATACAACT+AGG 0.652850 7_1:+1854561 None:intergenic
CCGAAAATACAACTAGGACA+AGG 0.664542 7_1:+1854567 None:intergenic
TAGACCTGGAGATCCATGCA+AGG 0.683078 7_1:-1852010 Msa1004360:three_prime_UTR
TGCATTCAGTAATGTCAGTG+AGG 0.688986 7_1:-1854278 Msa1004360:intron
ATGTGTTTGTATGTGCAGTG+AGG 0.702436 7_1:-1851685 Msa1004360:three_prime_UTR
ACAAGAACGTCTCCTAAACG+AGG 0.721995 7_1:+1854322 None:intergenic
ACGACCAACCAGTACCCGTG+CGG 0.767379 7_1:-1856111 Msa1004360:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTGTCTTA+TGG - chr7_1:1851717-1851736 Msa1004360:three_prime_UTR 10.0%
!! TTTAAATTTAGACGATTTAA+AGG + chr7_1:1851553-1851572 None:intergenic 15.0%
!!! TAACTTTTTTAGAATAGAAA+TGG + chr7_1:1851904-1851923 None:intergenic 15.0%
!! TTAACAAAAATGTCTTTAAA+CGG + chr7_1:1852540-1852559 None:intergenic 15.0%
!! AAAAAACCTAATAAGTTTAT+AGG - chr7_1:1852809-1852828 Msa1004360:intron 15.0%
!! AAAAATTGTTATGTTGAATT+TGG - chr7_1:1853899-1853918 Msa1004360:intron 15.0%
!! AAAATTGTTATGTTGAATTT+GGG - chr7_1:1853900-1853919 Msa1004360:intron 15.0%
!! TATGAATATAGAGTAATAAA+AGG + chr7_1:1854574-1854593 None:intergenic 15.0%
!!! TATAAATATTGAGCTTTTTA+CGG - chr7_1:1854825-1854844 Msa1004360:intron 15.0%
!! CATCATAAGAAAAAAATATT+TGG + chr7_1:1855542-1855561 None:intergenic 15.0%
!!! CTTATTATTTGTTGAAATTT+AGG - chr7_1:1855882-1855901 Msa1004360:intron 15.0%
!!! TTTTTTTTTTGTCTTATGGT+AGG - chr7_1:1851721-1851740 Msa1004360:three_prime_UTR 20.0%
!! CAAAAACACATAATTTAGAA+AGG + chr7_1:1851770-1851789 None:intergenic 20.0%
!!! TGTTTTATTATTTGCTAAAG+AGG - chr7_1:1852304-1852323 Msa1004360:intron 20.0%
!! TAAACACCTATAAACTTATT+AGG + chr7_1:1852818-1852837 None:intergenic 20.0%
!! AATAAGTTTATAGGTGTTTA+TGG - chr7_1:1852818-1852837 Msa1004360:intron 20.0%
!!! ATTCTCCATATATTTTTTCT+TGG - chr7_1:1853274-1853293 Msa1004360:intron 20.0%
!! TACTGATCATAATAAAAGAT+AGG + chr7_1:1853326-1853345 None:intergenic 20.0%
!! TGATGATATTATCATATCAT+AGG - chr7_1:1853376-1853395 Msa1004360:intron 20.0%
!!! ACTAGTTATTAGTATTGAAA+AGG - chr7_1:1853564-1853583 Msa1004360:intron 20.0%
!! AAATTGTTATGTTGAATTTG+GGG - chr7_1:1853901-1853920 Msa1004360:intron 20.0%
!! AAACAAAATAACAATAACAC+GGG + chr7_1:1854007-1854026 None:intergenic 20.0%
!! GAAACAAAATAACAATAACA+CGG + chr7_1:1854008-1854027 None:intergenic 20.0%
!! CAATATATAATCAACTTTCA+AGG + chr7_1:1854126-1854145 None:intergenic 20.0%
!!! TGAAAGTTGATTATATATTG+AGG - chr7_1:1854126-1854145 Msa1004360:intron 20.0%
!! TAAACATCAACAAATTATAG+CGG - chr7_1:1854476-1854495 Msa1004360:intron 20.0%
!! AGTTCATATATCAAACTAAT+TGG + chr7_1:1854627-1854646 None:intergenic 20.0%
!!! ATAAATATTGAGCTTTTTAC+GGG - chr7_1:1854826-1854845 Msa1004360:intron 20.0%
!! TTATGTTTATTATCAAAGTG+TGG - chr7_1:1855371-1855390 Msa1004360:intron 20.0%
!!! TTATTTGTTGAAATTTAGGT+TGG - chr7_1:1855886-1855905 Msa1004360:intron 20.0%
!! AATAGATTTCGTATTCTATT+TGG + chr7_1:1855938-1855957 None:intergenic 20.0%
! TTATTCTTATGTACTCTGTT+TGG - chr7_1:1851846-1851865 Msa1004360:three_prime_UTR 25.0%
! TAAAACACCATTCAGAATTA+GGG + chr7_1:1852291-1852310 None:intergenic 25.0%
! ATAAAACACCATTCAGAATT+AGG + chr7_1:1852292-1852311 None:intergenic 25.0%
! TATCTGCAATGAAAATTGTT+TGG - chr7_1:1852449-1852468 Msa1004360:intron 25.0%
!!! CTTCATATTGTTTCTAATAC+AGG - chr7_1:1852560-1852579 Msa1004360:intron 25.0%
! TGGTACTATTATATACTTCT+TGG - chr7_1:1852588-1852607 Msa1004360:intron 25.0%
! CTATTATATACTTCTTGGAT+TGG - chr7_1:1852593-1852612 Msa1004360:intron 25.0%
!! TCTTTAGGTTCTAATTTATG+AGG - chr7_1:1852784-1852803 Msa1004360:intron 25.0%
! TATAGATTCAAGAAGATAAC+TGG - chr7_1:1853120-1853139 Msa1004360:intron 25.0%
! GACTTCCAAGAAAAAATATA+TGG + chr7_1:1853282-1853301 None:intergenic 25.0%
! TGATATTATCATATCATAGG+TGG - chr7_1:1853379-1853398 Msa1004360:intron 25.0%
!! GTTATTAGTATTGAAAAGGT+TGG - chr7_1:1853568-1853587 Msa1004360:intron 25.0%
!! TCTTAATGTTCGTTTTCATT+AGG - chr7_1:1853621-1853640 Msa1004360:intron 25.0%
! TCTGAATATAATAATGAGCA+TGG + chr7_1:1853728-1853747 None:intergenic 25.0%
! CAAACTGAATTTCATTCAAA+CGG - chr7_1:1853875-1853894 Msa1004360:intron 25.0%
! GATTATATATTGAGGACTAT+TGG - chr7_1:1854134-1854153 Msa1004360:intron 25.0%
!!! TTTTCATTTTGAAGCCTTAA+TGG - chr7_1:1854175-1854194 Msa1004360:intron 25.0%
! AAGGTACGAATTTAAACATA+AGG - chr7_1:1854758-1854777 Msa1004360:intron 25.0%
!!! CATAAGGATTCTAAAGATTT+TGG - chr7_1:1854774-1854793 Msa1004360:intron 25.0%
! AGATAGATAAAAAGGAAGTA+AGG + chr7_1:1854993-1855012 None:intergenic 25.0%
! TTTCTGTGAGATAGATAAAA+AGG + chr7_1:1855001-1855020 None:intergenic 25.0%
! ATTTGTGACTCATAATTAGT+AGG + chr7_1:1855028-1855047 None:intergenic 25.0%
! ACATGCATGAAACTTATTTA+GGG - chr7_1:1855452-1855471 Msa1004360:intron 25.0%
!! GTGTTTTTGATGATTGTCTA+TGG - chr7_1:1851781-1851800 Msa1004360:three_prime_UTR 30.0%
! TGCTAGCATAAACATTTTTG+CGG + chr7_1:1852034-1852053 None:intergenic 30.0%
CTCAAATAAGTCAATCCAAA+CGG - chr7_1:1852063-1852082 Msa1004360:CDS 30.0%
TGGCATAAGCACTTAATTAA+GGG + chr7_1:1852090-1852109 None:intergenic 30.0%
ATGGCATAAGCACTTAATTA+AGG + chr7_1:1852091-1852110 None:intergenic 30.0%
!!! CTGTTTTTTATAAGCTATCC+AGG - chr7_1:1852170-1852189 Msa1004360:intron 30.0%
AAAAACTAGCATCTCAACAT+TGG + chr7_1:1852330-1852349 None:intergenic 30.0%
TTCTTGGTAAGTATCTTTGA+TGG - chr7_1:1852634-1852653 Msa1004360:intron 30.0%
! GATCGATATTTAGAAAGCAT+TGG - chr7_1:1852666-1852685 Msa1004360:intron 30.0%
TTGGATTATCTTCCAGATTA+TGG - chr7_1:1852740-1852759 Msa1004360:intron 30.0%
TGGATTATCTTCCAGATTAT+GGG - chr7_1:1852741-1852760 Msa1004360:intron 30.0%
CTCAGTTGAAATAAGTCTTT+AGG - chr7_1:1852769-1852788 Msa1004360:intron 30.0%
AAGTCAACATAAAGCTAGTT+TGG + chr7_1:1852934-1852953 None:intergenic 30.0%
CATCAGACAAACATGATAAA+TGG + chr7_1:1853361-1853380 None:intergenic 30.0%
! TTATGCATTTTGCAACACTT+TGG - chr7_1:1853498-1853517 Msa1004360:intron 30.0%
! TAATGTTCGTTTTCATTAGG+CGG - chr7_1:1853624-1853643 Msa1004360:intron 30.0%
! AGCCATCTTTTTATGTATCA+GGG - chr7_1:1853690-1853709 Msa1004360:CDS 30.0%
TTCAGTTTGACAAGAAACTA+TGG + chr7_1:1853864-1853883 None:intergenic 30.0%
!!! TGTTATTTTGTTTCCATTGC+AGG - chr7_1:1854014-1854033 Msa1004360:intron 30.0%
TTTACTAAAAACTCCTGCAA+TGG + chr7_1:1854030-1854049 None:intergenic 30.0%
CTTTCAAGGATACATTTGAA+TGG + chr7_1:1854112-1854131 None:intergenic 30.0%
ATGAGCTTAAATCTATTCAC+TGG - chr7_1:1854225-1854244 Msa1004360:intron 30.0%
! TTATAGCGGAAATAGTTTAG+AGG - chr7_1:1854490-1854509 Msa1004360:intron 30.0%
GGTCTCACATAAAAAACTTT+AGG + chr7_1:1854553-1854572 None:intergenic 30.0%
! TATCTTCCAATGTTTGTTAC+AGG - chr7_1:1854670-1854689 Msa1004360:CDS 30.0%
!!! TTACAGGCATTTCCTTTTTT+TGG - chr7_1:1854686-1854705 Msa1004360:CDS 30.0%
!!! TCCTTTTTTTGGATTTTCTG+TGG - chr7_1:1854697-1854716 Msa1004360:CDS 30.0%
TAGAACTAATTATGCTTTCC+AGG - chr7_1:1855067-1855086 Msa1004360:intron 30.0%
ACTTTCATTTCTTGTTCTGT+TGG - chr7_1:1855165-1855184 Msa1004360:intron 30.0%
CTTTCATTTCTTGTTCTGTT+GGG - chr7_1:1855166-1855185 Msa1004360:intron 30.0%
GACATGCATGAAACTTATTT+AGG - chr7_1:1855451-1855470 Msa1004360:intron 30.0%
GATTTCGTATTCTATTTGGT+GGG + chr7_1:1855934-1855953 None:intergenic 30.0%
AGATTTCGTATTCTATTTGG+TGG + chr7_1:1855935-1855954 None:intergenic 30.0%
CAGCAATAATAGTGTGTTAT+TGG - chr7_1:1855984-1856003 Msa1004360:CDS 30.0%
AACAAGATAACTGCTATGAT+TGG + chr7_1:1856173-1856192 None:intergenic 30.0%
TTGCATGTCTTATCATTTGA+AGG - chr7_1:1856192-1856211 Msa1004360:five_prime_UTR 30.0%
TTTAGAAAGGACTGTGATGT+TGG + chr7_1:1851757-1851776 None:intergenic 35.0%
! TTTTATAAGCTATCCAGGAG+AGG - chr7_1:1852175-1852194 Msa1004360:intron 35.0%
!! CTTATTTTCATTACCTCTCC+TGG + chr7_1:1852191-1852210 None:intergenic 35.0%
! AGACTAATTGGCAAAGCTTT+TGG + chr7_1:1852220-1852239 None:intergenic 35.0%
CATAAGCAGTTGAGACTAAT+TGG + chr7_1:1852232-1852251 None:intergenic 35.0%
ATTCAGAATTAGGGTCTGTT+AGG + chr7_1:1852282-1852301 None:intergenic 35.0%
TAACAGACCCTAATTCTGAA+TGG - chr7_1:1852281-1852300 Msa1004360:intron 35.0%
!! ATCATGGGCCATTTTCTTTA+TGG - chr7_1:1852387-1852406 Msa1004360:intron 35.0%
!! TCATGGGCCATTTTCTTTAT+GGG - chr7_1:1852388-1852407 Msa1004360:intron 35.0%
AGCAGTTCCCATAAAGAAAA+TGG + chr7_1:1852398-1852417 None:intergenic 35.0%
TTCTTTATGGGAACTGCTTA+TGG - chr7_1:1852400-1852419 Msa1004360:intron 35.0%
TCTTTATGGGAACTGCTTAT+GGG - chr7_1:1852401-1852420 Msa1004360:intron 35.0%
! CTTATGGGAAGTATAAGAGA+TGG - chr7_1:1852416-1852435 Msa1004360:intron 35.0%
ACAGGGCAGAAATAACATAA+CGG + chr7_1:1852499-1852518 None:intergenic 35.0%
! TGTTTCTAATACAGGCGAAA+TGG - chr7_1:1852568-1852587 Msa1004360:intron 35.0%
! GATGTGGAAGCAAATTTTCT+TGG - chr7_1:1852618-1852637 Msa1004360:intron 35.0%
TAAACAATACCCCACTAGTT+TGG - chr7_1:1852721-1852740 Msa1004360:intron 35.0%
GAAGATAATCCAAACTAGTG+GGG + chr7_1:1852733-1852752 None:intergenic 35.0%
GGAAGATAATCCAAACTAGT+GGG + chr7_1:1852734-1852753 None:intergenic 35.0%
TGGAAGATAATCCAAACTAG+TGG + chr7_1:1852735-1852754 None:intergenic 35.0%
! CCTTGTCCTAGTTGTATTTT+CGG - chr7_1:1853164-1853183 Msa1004360:intron 35.0%
GAACATCCGAAAATACAACT+AGG + chr7_1:1853173-1853192 None:intergenic 35.0%
! ACGTGTGTGCATAAGTTTTT+AGG + chr7_1:1853242-1853261 None:intergenic 35.0%
GACATTACTGAATGCATACA+AGG + chr7_1:1853449-1853468 None:intergenic 35.0%
! GAGCCATCTTTTTATGTATC+AGG - chr7_1:1853689-1853708 Msa1004360:CDS 35.0%
TGCCCTGATACATAAAAAGA+TGG + chr7_1:1853695-1853714 None:intergenic 35.0%
AGCTCTGTAAATGACCATTA+AGG + chr7_1:1854192-1854211 None:intergenic 35.0%
GCTTAAATCTATTCACTGGT+CGG - chr7_1:1854229-1854248 Msa1004360:intron 35.0%
CAAAAGATGAGAAGAAGCTA+AGG - chr7_1:1854413-1854432 Msa1004360:intron 35.0%
AGCTAAGGAAGTTTAAACTC+AGG - chr7_1:1854428-1854447 Msa1004360:intron 35.0%
TTACTCTTCATCAATCCAAG+AGG + chr7_1:1854459-1854478 None:intergenic 35.0%
GAAATGCCTGTAACAAACAT+TGG + chr7_1:1854679-1854698 None:intergenic 35.0%
GCCACAGAAAATCCAAAAAA+AGG + chr7_1:1854701-1854720 None:intergenic 35.0%
!! ATTATGCTTTCCAGGTTGAT+TGG - chr7_1:1855075-1855094 Msa1004360:intron 35.0%
!!! CTGTTGGGATTCTTTTTTTC+TGG - chr7_1:1855181-1855200 Msa1004360:intron 35.0%
! TGTGGCTTTTGCTAAAATCA+CGG - chr7_1:1855389-1855408 Msa1004360:intron 35.0%
GAGATATCCTTAGTCTGTAA+TGG - chr7_1:1855515-1855534 Msa1004360:intron 35.0%
ATTTGGTCCATTACAGACTA+AGG + chr7_1:1855525-1855544 None:intergenic 35.0%
ATAGCAAAGGAAATGTGTCT+GGG - chr7_1:1855667-1855686 Msa1004360:intron 35.0%
TATACTTTCTTAAGCTACCC+AGG + chr7_1:1855703-1855722 None:intergenic 35.0%
! AGCTTAAGAAAGTATAGACC+TGG - chr7_1:1855707-1855726 Msa1004360:intron 35.0%
AACGCTACAATTTGTAGCTT+CGG - chr7_1:1856093-1856112 Msa1004360:five_prime_UTR 35.0%
AACGCACGATAAAAAGACAT+TGG - chr7_1:1856118-1856137 Msa1004360:five_prime_UTR 35.0%
ACGCACGATAAAAAGACATT+GGG - chr7_1:1856119-1856138 Msa1004360:five_prime_UTR 35.0%
ATTGGGATGCGATAAATCAA+AGG - chr7_1:1856136-1856155 Msa1004360:five_prime_UTR 35.0%
TGTCTTATCATTTGAAGGCT+CGG - chr7_1:1856197-1856216 Msa1004360:five_prime_UTR 35.0%
CTACAGAAGAAAGCCTCTAA+AGG - chr7_1:1851816-1851835 Msa1004360:three_prime_UTR 40.0%
GAATAAGCAAGCACCTTTAG+AGG + chr7_1:1851832-1851851 None:intergenic 40.0%
CACTTAATTAAGGGTCCGTT+TGG + chr7_1:1852081-1852100 None:intergenic 40.0%
!! ACAGAAGTGTTTGTGCTGTA+TGG + chr7_1:1852110-1852129 None:intergenic 40.0%
TGTAGCAAACCCTTCAATCA+TGG - chr7_1:1852371-1852390 Msa1004360:intron 40.0%
GTAGCAAACCCTTCAATCAT+GGG - chr7_1:1852372-1852391 Msa1004360:intron 40.0%
GAAAATGGCCCATGATTGAA+GGG + chr7_1:1852383-1852402 None:intergenic 40.0%
AGAAAATGGCCCATGATTGA+AGG + chr7_1:1852384-1852403 None:intergenic 40.0%
TGACAGTGAGAGGAAAAACA+GGG + chr7_1:1852516-1852535 None:intergenic 40.0%
TTGACAGTGAGAGGAAAAAC+AGG + chr7_1:1852517-1852536 None:intergenic 40.0%
TTTAAACGGTTGACAGTGAG+AGG + chr7_1:1852526-1852545 None:intergenic 40.0%
!! ACTTCTTGGATTGGTTGATG+TGG - chr7_1:1852602-1852621 Msa1004360:intron 40.0%
ACTGAGAAGATCCCATAATC+TGG + chr7_1:1852755-1852774 None:intergenic 40.0%
CACCTTATGAACAGTTGTGA+AGG - chr7_1:1853002-1853021 Msa1004360:intron 40.0%
TGCCTTCACAACTGTTCATA+AGG + chr7_1:1853007-1853026 None:intergenic 40.0%
TAGCATCACACTTGTAAGTG+AGG + chr7_1:1853040-1853059 None:intergenic 40.0%
GGTGTAATTGTTTGCATAGC+CGG - chr7_1:1853141-1853160 Msa1004360:intron 40.0%
AAATACAACTAGGACAAGGC+CGG + chr7_1:1853163-1853182 None:intergenic 40.0%
CCGAAAATACAACTAGGACA+AGG + chr7_1:1853167-1853186 None:intergenic 40.0%
! GTATTTTCGGATGTTCATGC+TGG - chr7_1:1853177-1853196 Msa1004360:intron 40.0%
TGCATTCAGTAATGTCAGTG+AGG - chr7_1:1853453-1853472 Msa1004360:intron 40.0%
AAACTCACTGCAAGTGTTTC+AGG - chr7_1:1853667-1853686 Msa1004360:CDS 40.0%
GTAAATGCAAGCCCATAAGT+AGG + chr7_1:1853838-1853857 None:intergenic 40.0%
AAGTGACGCAAGTGCATAAA+AGG + chr7_1:1853954-1853973 None:intergenic 40.0%
ATGGCAATGTTAGGTCTCTT+TGG - chr7_1:1854072-1854091 Msa1004360:intron 40.0%
TAAACTCAGGATAAGCCTCT+TGG - chr7_1:1854441-1854460 Msa1004360:intron 40.0%
TTCGTACCTTAAGCAGAACA+GGG + chr7_1:1854748-1854767 None:intergenic 40.0%
ATTCGTACCTTAAGCAGAAC+AGG + chr7_1:1854749-1854768 None:intergenic 40.0%
TATTTCGTCTCACAGCTCAA+CGG - chr7_1:1854876-1854895 Msa1004360:intron 40.0%
AGTAGTACATCCAATCAACC+TGG + chr7_1:1855088-1855107 None:intergenic 40.0%
GGTTGATTGGATGTACTACT+TGG - chr7_1:1855088-1855107 Msa1004360:intron 40.0%
TCAGCATTGTCAATCGTGTT+GGG - chr7_1:1855345-1855364 Msa1004360:intron 40.0%
TGAATAGACGATGAGTTTGG+TGG + chr7_1:1855431-1855450 None:intergenic 40.0%
GTCTGAATAGACGATGAGTT+TGG + chr7_1:1855434-1855453 None:intergenic 40.0%
GTTCTTCAACAGCATTAGCA+GGG + chr7_1:1855605-1855624 None:intergenic 40.0%
! TTTGCTATGAGTTGCTGAAC+TGG + chr7_1:1855655-1855674 None:intergenic 40.0%
AGTTCAGCAACTCATAGCAA+AGG - chr7_1:1855654-1855673 Msa1004360:intron 40.0%
CATAGCAAAGGAAATGTGTC+TGG - chr7_1:1855666-1855685 Msa1004360:intron 40.0%
! CTTCATGGTTTTTCCTTGCA+TGG + chr7_1:1855737-1855756 None:intergenic 40.0%
AGAAGAGCCTCTTTCAGAAA+TGG - chr7_1:1855755-1855774 Msa1004360:intron 40.0%
GAAGAGCCTCTTTCAGAAAT+GGG - chr7_1:1855756-1855775 Msa1004360:intron 40.0%
! GAATAGCCCATTTCTGAAAG+AGG + chr7_1:1855765-1855784 None:intergenic 40.0%
ATGTGTTTGTATGTGCAGTG+AGG - chr7_1:1856046-1856065 Msa1004360:five_prime_UTR 40.0%
TCTCGATGGAATTTGTCATG+TGG - chr7_1:1856227-1856246 Msa1004360:five_prime_UTR 40.0%
TATAAAGCCACCTACCTGCA+CGG + chr7_1:1853206-1853225 None:intergenic 45.0%
GGTGGAAGTAATCCTCGTTT+AGG - chr7_1:1853397-1853416 Msa1004360:intron 45.0%
ACAAGAACGTCTCCTAAACG+AGG + chr7_1:1853412-1853431 None:intergenic 45.0%
ATTGCCTGTGGCCTACTTAT+GGG - chr7_1:1853824-1853843 Msa1004360:intron 45.0%
TGCTGATAGAGAAGAGCTCA+TGG - chr7_1:1854053-1854072 Msa1004360:intron 45.0%
GAAGAGCTCATGGCAATGTT+AGG - chr7_1:1854063-1854082 Msa1004360:intron 45.0%
GCAATGTTAGGTCTCTTTGG+TGG - chr7_1:1854075-1854094 Msa1004360:intron 45.0%
AAATCTATTCACTGGTCGGC+TGG - chr7_1:1854233-1854252 Msa1004360:intron 45.0%
AATCTATTCACTGGTCGGCT+GGG - chr7_1:1854234-1854253 Msa1004360:intron 45.0%
TCTAGTCCCTGTTCTGCTTA+AGG - chr7_1:1854739-1854758 Msa1004360:intron 45.0%
TAAGACAGACCACATGTCTG+AGG + chr7_1:1854931-1854950 None:intergenic 45.0%
CATCTTCGCTTACCATGAGA+AGG - chr7_1:1854956-1854975 Msa1004360:intron 45.0%
GTTACTGACAGACCTTCTCA+TGG + chr7_1:1854971-1854990 None:intergenic 45.0%
TGGATGTACTACTTGGCGTT+TGG - chr7_1:1855095-1855114 Msa1004360:intron 45.0%
CTCAGCATTGTCAATCGTGT+TGG - chr7_1:1855344-1855363 Msa1004360:intron 45.0%
CAGCATTGTCAATCGTGTTG+GGG - chr7_1:1855346-1855365 Msa1004360:intron 45.0%
! GGCTTTTGCTAAAATCACGG+TGG - chr7_1:1855392-1855411 Msa1004360:intron 45.0%
GATGTTTCGTCGTATTGCAG+AGG - chr7_1:1855558-1855577 Msa1004360:intron 45.0%
! TCGTCGTATTGCAGAGGTTT+TGG - chr7_1:1855564-1855583 Msa1004360:intron 45.0%
GGTTCTTCAACAGCATTAGC+AGG + chr7_1:1855606-1855625 None:intergenic 45.0%
AGAACCTGTTGCAATCAGAC+AGG - chr7_1:1855620-1855639 Msa1004360:intron 45.0%
TCATCCTGTCTGATTGCAAC+AGG + chr7_1:1855627-1855646 None:intergenic 45.0%
TGTTGCAATCAGACAGGATG+AGG - chr7_1:1855626-1855645 Msa1004360:intron 45.0%
! TTTTCCTTGCATGGATCTCC+AGG + chr7_1:1855728-1855747 None:intergenic 45.0%
CTGAAAGAGGCTCTTCTTCA+TGG + chr7_1:1855752-1855771 None:intergenic 45.0%
TTCTTGCATTGCACTCTTGG+AGG + chr7_1:1855807-1855826 None:intergenic 45.0%
TGCTTCTTGCATTGCACTCT+TGG + chr7_1:1855810-1855829 None:intergenic 45.0%
! GTGTGATGCTACTTGACTGC+TGG - chr7_1:1853049-1853068 Msa1004360:intron 50.0%
AAGCAGCATGACGCATGGAA+TGG + chr7_1:1853076-1853095 None:intergenic 50.0%
CATGTAAGCAGCATGACGCA+TGG + chr7_1:1853081-1853100 None:intergenic 50.0%
! CATGCGTCATGCTGCTTACA+TGG - chr7_1:1853079-1853098 Msa1004360:intron 50.0%
! GGAGACGTTCTTGTTATCGC+TGG - chr7_1:1853418-1853437 Msa1004360:intron 50.0%
CGTCTTTCCATGATTGCCTG+TGG - chr7_1:1853812-1853831 Msa1004360:intron 50.0%
AAGTAGGCCACAGGCAATCA+TGG + chr7_1:1853822-1853841 None:intergenic 50.0%
GATTGCCTGTGGCCTACTTA+TGG - chr7_1:1853823-1853842 Msa1004360:intron 50.0%
ATCTATTCACTGGTCGGCTG+GGG - chr7_1:1854235-1854254 Msa1004360:intron 50.0%
CTCTTCTGACCTCAGACATG+TGG - chr7_1:1854919-1854938 Msa1004360:intron 50.0%
!! GCGTTTGGTGCTGTTGTCAT+TGG - chr7_1:1855110-1855129 Msa1004360:intron 50.0%
!!! TTGCAGAGGTTTTGGAGACG+AGG - chr7_1:1855572-1855591 Msa1004360:intron 50.0%
TGTCTGGGAGCTCAAAAACC+TGG - chr7_1:1855682-1855701 Msa1004360:intron 50.0%
GTCTGGGAGCTCAAAAACCT+GGG - chr7_1:1855683-1855702 Msa1004360:intron 50.0%
TAGACCTGGAGATCCATGCA+AGG - chr7_1:1855721-1855740 Msa1004360:intron 50.0%
!! GGCTCGGTATTTTCTCTCGA+TGG - chr7_1:1856213-1856232 Msa1004360:five_prime_UTR 50.0%
AACATACCCGTGCATCCGCA+CGG + chr7_1:1851638-1851657 None:intergenic 55.0%
CAAGCCCATAAGTAGGCCAC+AGG + chr7_1:1853831-1853850 None:intergenic 55.0%
ACGACCAACCAGTACCCGTG+CGG - chr7_1:1851620-1851639 Msa1004360:three_prime_UTR 60.0%
ACATACCCGTGCATCCGCAC+GGG + chr7_1:1851637-1851656 None:intergenic 60.0%
GTTCATGCTGGTGACCGTGC+AGG - chr7_1:1853189-1853208 Msa1004360:intron 60.0%
ATGCTGGTGACCGTGCAGGT+AGG - chr7_1:1853193-1853212 Msa1004360:intron 60.0%
!! GCACGGGTACTGGTTGGTCG+TGG + chr7_1:1851621-1851640 None:intergenic 65.0%
!! GCATCCGCACGGGTACTGGT+TGG + chr7_1:1851627-1851646 None:intergenic 65.0%
CCAGTACCCGTGCGGATGCA+CGG - chr7_1:1851628-1851647 Msa1004360:three_prime_UTR 65.0%
CAGTACCCGTGCGGATGCAC+GGG - chr7_1:1851629-1851648 Msa1004360:three_prime_UTR 65.0%
CTGGTGACCGTGCAGGTAGG+TGG - chr7_1:1853196-1853215 Msa1004360:intron 65.0%
CCGTGCATCCGCACGGGTAC+TGG + chr7_1:1851631-1851650 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 1851497 1856256 1851497 ID=Msa1004360;Name=Msa1004360
chr7_1 mRNA 1851497 1856256 1851497 ID=Msa1004360-mRNA-1;Parent=Msa1004360;Name=Msa1004360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=239|0.8|1|1|0.8|1|6|543|216
chr7_1 exon 1851497 1852175 1851497 ID=Msa1004360-mRNA-1:exon:722;Parent=Msa1004360-mRNA-1
chr7_1 exon 1853635 1853717 1853635 ID=Msa1004360-mRNA-1:exon:721;Parent=Msa1004360-mRNA-1
chr7_1 exon 1854279 1854355 1854279 ID=Msa1004360-mRNA-1:exon:720;Parent=Msa1004360-mRNA-1
chr7_1 exon 1854543 1854737 1854543 ID=Msa1004360-mRNA-1:exon:719;Parent=Msa1004360-mRNA-1
chr7_1 exon 1855114 1855171 1855114 ID=Msa1004360-mRNA-1:exon:718;Parent=Msa1004360-mRNA-1
chr7_1 exon 1855916 1856256 1855916 ID=Msa1004360-mRNA-1:exon:717;Parent=Msa1004360-mRNA-1
chr7_1 five_prime_UTR 1856018 1856256 1856018 ID=Msa1004360-mRNA-1:five_prime_utr;Parent=Msa1004360-mRNA-1
chr7_1 CDS 1855916 1856017 1855916 ID=Msa1004360-mRNA-1:cds;Parent=Msa1004360-mRNA-1
chr7_1 CDS 1855114 1855171 1855114 ID=Msa1004360-mRNA-1:cds;Parent=Msa1004360-mRNA-1
chr7_1 CDS 1854543 1854737 1854543 ID=Msa1004360-mRNA-1:cds;Parent=Msa1004360-mRNA-1
chr7_1 CDS 1854279 1854355 1854279 ID=Msa1004360-mRNA-1:cds;Parent=Msa1004360-mRNA-1
chr7_1 CDS 1853635 1853717 1853635 ID=Msa1004360-mRNA-1:cds;Parent=Msa1004360-mRNA-1
chr7_1 CDS 1852040 1852175 1852040 ID=Msa1004360-mRNA-1:cds;Parent=Msa1004360-mRNA-1
chr7_1 three_prime_UTR 1851497 1852039 1851497 ID=Msa1004360-mRNA-1:three_prime_utr;Parent=Msa1004360-mRNA-1
Gene Sequence

>Msa1004360

ATGGTAGGAATTAATGCTCCAACATCACAGTCCTTTCTAAATTATGTGTTTTTGATGATTGTCTATGGAACTATTCTACTCTACAGAAGAAAGCCTCTAAAGGCGAAATGGTACTATTATATACTTCTTGGATTGGTTGATGTGGAAGCAAATTTTCTTGTTGTGAAGGCATATCAATACACCTCACTTACAAGTGTGATGCTACTTGACTGCTGGTCCATTCCATGCGTCATGCTGCTTACATGGATTTTCTTGAAAACAAAATATAGATTCAAGAAGATAACTGGTGTAATTGTTTGCATAGCCGGCCTTGTCCTAGTTGTATTTTCGGATGTTCATGCTGGTGACCGTGCAGGTGGAAGTAATCCTCGTTTAGGAGACGTTCTTGTTATCGCTGGCGCTACCTTGTATGCATTCAGTAATGTCAGTGAGGAGTTTTTAGTAAAAAATGCTGATAGAGAAGAGCTCATGGCAATGTTAGGTCTCTTTGGTGGCATCATCAGTGCCATTCAAATAGGTTTTGGAGACGAGGATCAACACCCTGCTAATGCTGTTGAAGAACCTGTTGCAATCAGACAGGATGAGGAAGCCAGTTCAGCAACTCATAGCAAAGGAAATGTGTCTGGGAGCTCAAAAACCTGGGTAGCTTAA

Protein sequence

>Msa1004360

MVGINAPTSQSFLNYVFLMIVYGTILLYRRKPLKAKWYYYILLGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPCVMLLTWIFLKTKYRFKKITGVIVCIAGLVLVVFSDVHAGDRAGGSNPRLGDVLVIAGATLYAFSNVSEEFLVKNADREELMAMLGLFGGIISAIQIGFGDEDQHPANAVEEPVAIRQDEEASSATHSKGNVSGSSKTWVA*