Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004190 | XP_003621016.1 | 98.830 | 342 | 4 | 0 | 1 | 342 | 3 | 344 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004190 | sp|Q5T1Q4|S35F1_HUMAN | 44.884 | 303 | 159 | 3 | 3 | 297 | 52 | 354 | 9.28e-83 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004190 | G7KWQ4 | 98.830 | 342 | 4 | 0 | 1 | 342 | 3 | 344 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa1004190 | 0.834632 | 2.678957e-56 | -8.615850e-47 |
| Msa0043980 | Msa1004190 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0077450 | Msa1004190 | 0.806399 | 8.383894e-50 | -8.615850e-47 |
| Msa0079070 | Msa1004190 | 0.800637 | 1.312832e-48 | -8.615850e-47 |
| Msa0084080 | Msa1004190 | 0.813860 | 2.066950e-51 | -8.615850e-47 |
| Msa0090360 | Msa1004190 | 0.803654 | 3.143706e-49 | -8.615850e-47 |
| Msa0622170 | Msa1004190 | -0.810938 | 8.986979e-51 | -8.615850e-47 |
| Msa0667050 | Msa1004190 | 0.801750 | 7.770083e-49 | -8.615850e-47 |
| Msa0723990 | Msa1004190 | 0.809031 | 2.313093e-50 | -8.615850e-47 |
| Msa0760180 | Msa1004190 | 0.805842 | 1.097961e-49 | -8.615850e-47 |
| Msa0760250 | Msa1004190 | 0.805912 | 1.061619e-49 | -8.615850e-47 |
| Msa0763890 | Msa1004190 | 0.817928 | 2.556844e-52 | -8.615850e-47 |
| Msa0763920 | Msa1004190 | 0.802073 | 6.670989e-49 | -8.615850e-47 |
| Msa0764570 | Msa1004190 | 0.812948 | 3.278842e-51 | -8.615850e-47 |
| Msa0784480 | Msa1004190 | 0.807241 | 5.563716e-50 | -8.615850e-47 |
| Msa0799370 | Msa1004190 | 0.814019 | 1.906965e-51 | -8.615850e-47 |
| Msa0818060 | Msa1004190 | 0.819207 | 1.310862e-52 | -8.615850e-47 |
| Msa0820770 | Msa1004190 | 0.801733 | 7.832746e-49 | -8.615850e-47 |
| Msa0170140 | Msa1004190 | 0.810372 | 1.190864e-50 | -8.615850e-47 |
| Msa0173070 | Msa1004190 | 0.813542 | 2.427750e-51 | -8.615850e-47 |
| Msa0173390 | Msa1004190 | 0.801393 | 9.195045e-49 | -8.615850e-47 |
| Msa0367870 | Msa1004190 | 0.805494 | 1.299230e-49 | -8.615850e-47 |
| Msa0379640 | Msa1004190 | 0.819320 | 1.235876e-52 | -8.615850e-47 |
| Msa0433410 | Msa1004190 | -0.801716 | 7.895948e-49 | -8.615850e-47 |
| Msa0436760 | Msa1004190 | 0.823967 | 1.041384e-53 | -8.615850e-47 |
| Msa0992580 | Msa1004190 | 0.807190 | 5.705695e-50 | -8.615850e-47 |
| Msa1004010 | Msa1004190 | 0.883945 | 2.919113e-71 | -8.615850e-47 |
| Msa1004190 | Msa1004360 | 0.842443 | 2.577640e-58 | -8.615850e-47 |
| Msa1004190 | Msa1036710 | -0.817734 | 2.828081e-52 | -8.615850e-47 |
| Msa1004190 | Msa1039710 | -0.823304 | 1.488265e-53 | -8.615850e-47 |
| Msa1004190 | Msa1046800 | 0.918205 | 2.077353e-86 | -8.615850e-47 |
| Msa1004190 | Msa1135470 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
| Msa1004190 | Msa1163900 | -0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa1004190 | Msa1177780 | 0.802848 | 4.616459e-49 | -8.615850e-47 |
| Msa1004190 | Msa1204530 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa1004190 | Msa1305810 | 0.804721 | 1.885419e-49 | -8.615850e-47 |
| Msa1004190 | Msa1330170 | 0.812783 | 3.562951e-51 | -8.615850e-47 |
| Msa1004190 | Msa1330180 | 0.820018 | 8.558979e-53 | -8.615850e-47 |
| Msa1004190 | Msa1331000 | 0.814437 | 1.541677e-51 | -8.615850e-47 |
| Msa1004190 | Msa1366300 | 0.803401 | 3.547579e-49 | -8.615850e-47 |
| Msa1004190 | Msa1374470 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
| Msa1004190 | Msa1421990 | 0.810498 | 1.118590e-50 | -8.615850e-47 |
| Msa1004190 | Msa1433390 | 0.804207 | 2.412862e-49 | -8.615850e-47 |
| Msa0363790 | Msa1004190 | 0.810697 | 1.013135e-50 | -8.615850e-47 |
| Msa0516440 | Msa1004190 | 0.822393 | 2.426555e-53 | -8.615850e-47 |
| Msa0518380 | Msa1004190 | 0.802066 | 6.690908e-49 | -8.615850e-47 |
| Msa0526070 | Msa1004190 | -0.816388 | 5.675645e-52 | -8.615850e-47 |
| Msa0861090 | Msa1004190 | 0.801370 | 9.295570e-49 | -8.615850e-47 |
| Msa0862110 | Msa1004190 | 0.825497 | 4.538578e-54 | -8.615850e-47 |
| Msa0924310 | Msa1004190 | 0.802256 | 6.114495e-49 | -8.615850e-47 |
| Msa0936390 | Msa1004190 | 0.816565 | 5.179111e-52 | -8.615850e-47 |
| Msa0958030 | Msa1004190 | 0.800855 | 1.185074e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004190 | MtrunA17_Chr7g0214561 | 98.830 | 342 | 4 | 0 | 1 | 342 | 3 | 344 | 0.0 | 688 |
| Msa1004190 | MtrunA17_Chr7g0266091 | 51.418 | 282 | 135 | 1 | 21 | 300 | 28 | 309 | 3.28e-97 | 290 |
| Msa1004190 | MtrunA17_Chr7g0266101 | 43.730 | 311 | 155 | 4 | 21 | 313 | 28 | 336 | 7.28e-76 | 238 |
| Msa1004190 | MtrunA17_Chr7g0214571 | 88.732 | 71 | 8 | 0 | 91 | 161 | 252 | 322 | 1.94e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004190 | AT3G59340.1 | 72.165 | 291 | 81 | 0 | 8 | 298 | 13 | 303 | 2.51e-158 | 447 |
| Msa1004190 | AT3G59340.2 | 72.165 | 291 | 81 | 0 | 8 | 298 | 40 | 330 | 2.57e-158 | 447 |
| Msa1004190 | AT3G59340.3 | 72.165 | 291 | 81 | 0 | 8 | 298 | 40 | 330 | 2.57e-158 | 447 |
| Msa1004190 | AT3G59340.4 | 72.165 | 291 | 81 | 0 | 8 | 298 | 40 | 330 | 2.57e-158 | 447 |
| Msa1004190 | AT3G59310.1 | 68.389 | 329 | 99 | 1 | 2 | 325 | 4 | 332 | 2.28e-157 | 444 |
| Msa1004190 | AT3G59310.2 | 62.500 | 360 | 99 | 2 | 2 | 325 | 4 | 363 | 4.04e-151 | 429 |
| Msa1004190 | AT3G59310.3 | 64.438 | 329 | 94 | 2 | 2 | 325 | 4 | 314 | 9.44e-142 | 404 |
| Msa1004190 | AT3G59320.1 | 62.848 | 323 | 120 | 0 | 8 | 330 | 11 | 333 | 4.15e-134 | 385 |
| Msa1004190 | AT3G59330.3 | 63.559 | 236 | 58 | 2 | 2 | 211 | 5 | 238 | 1.51e-92 | 277 |
| Msa1004190 | AT3G59330.2 | 63.519 | 233 | 57 | 2 | 2 | 208 | 5 | 235 | 4.18e-91 | 273 |
| Msa1004190 | AT3G59320.2 | 61.207 | 232 | 90 | 0 | 99 | 330 | 1 | 232 | 2.54e-88 | 265 |
| Msa1004190 | AT3G59330.1 | 61.864 | 236 | 53 | 2 | 2 | 211 | 5 | 229 | 1.66e-87 | 263 |
Find 92 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTATTTGTTGAAATTT+AGG | 0.132074 | 7_1:-1522869 | Msa1004190:three_prime_UTR |
| AATAGATTTCGTATTCTATT+TGG | 0.186925 | 7_1:+1522816 | None:intergenic |
| CAGCAATAATAGTGTGTTAT+TGG | 0.197604 | 7_1:-1522767 | Msa1004190:three_prime_UTR |
| TGCTTCTTGCATTGCACTCT+TGG | 0.249507 | 7_1:+1522943 | None:intergenic |
| GAATAAGCAAGCACCTTTAG+AGG | 0.281729 | 7_1:+1526886 | None:intergenic |
| TCTGATTTCGTGTGTGTCTC+TGG | 0.282501 | 7_1:-1527357 | Msa1004190:five_prime_UTR |
| CTGAAAGAGGCTCTTCTTCA+TGG | 0.285624 | 7_1:+1523001 | None:intergenic |
| TGGTACTATTATATACTTCT+TGG | 0.287931 | 7_1:-1526127 | Msa1004190:CDS |
| ACGTTAATTGGTCTTGGTTT+AGG | 0.294867 | 7_1:-1527280 | Msa1004190:CDS |
| TGGACGAAGAACACGTTAAT+TGG | 0.301624 | 7_1:-1527292 | Msa1004190:CDS |
| ATGGCAATGTTAGGTCTCTT+TGG | 0.309096 | 7_1:-1524636 | Msa1004190:CDS |
| TCGTCGTATTGCAGAGGTTT+TGG | 0.323324 | 7_1:-1523186 | Msa1004190:intron |
| TTTGCTATGAGTTGCTGAAC+TGG | 0.331987 | 7_1:+1523098 | None:intergenic |
| TTGCATGTCTTATCATTTGA+AGG | 0.332809 | 7_1:-1522559 | Msa1004190:three_prime_UTR |
| AAATCTATTCACTGGTCGGC+TGG | 0.333126 | 7_1:-1524475 | Msa1004190:CDS |
| CCAATATGCTGATTCTGTTT+CGG | 0.343697 | 7_1:-1527554 | Msa1004190:five_prime_UTR |
| CATGCGTCATGCTGCTTACA+TGG | 0.358791 | 7_1:-1525631 | Msa1004190:CDS |
| TCTCTTCTCATCACTGCTAC+TGG | 0.360410 | 7_1:-1527247 | Msa1004190:CDS |
| CCGAAACAGAATCAGCATAT+TGG | 0.364961 | 7_1:+1527554 | None:intergenic |
| ATTATGCTTTCCAGGTTGAT+TGG | 0.366989 | 7_1:-1523671 | Msa1004190:intron |
| AACGCTACAATTTGTAGCTT+CGG | 0.381029 | 7_1:-1522658 | Msa1004190:three_prime_UTR |
| TATAGATTCAAGAAGATAAC+TGG | 0.382296 | 7_1:-1525590 | Msa1004190:CDS |
| AGAAGAGCCTCTTTCAGAAA+TGG | 0.384499 | 7_1:-1522995 | Msa1004190:three_prime_UTR |
| ATTCGTACCTTAAGCAGAAC+AGG | 0.384721 | 7_1:+1524000 | None:intergenic |
| TCATCCTGTCTGATTGCAAC+AGG | 0.386095 | 7_1:+1523126 | None:intergenic |
| TGATGGATATTAAGAAATAT+TGG | 0.402015 | 7_1:-1527312 | Msa1004190:CDS |
| GGTGGAAGTAATCCTCGTTT+AGG | 0.403367 | 7_1:-1525313 | Msa1004190:CDS |
| GGTGTAATTGTTTGCATAGC+CGG | 0.409701 | 7_1:-1525569 | Msa1004190:CDS |
| GCGTTTGGTGCTGTTGTCAT+TGG | 0.411820 | 7_1:-1523636 | Msa1004190:CDS |
| CATAGCAAAGGAAATGTGTC+TGG | 0.413561 | 7_1:-1523084 | Msa1004190:CDS |
| TCTAGTCCCTGTTCTGCTTA+AGG | 0.413618 | 7_1:-1524007 | Msa1004190:intron |
| GAATAGCCCATTTCTGAAAG+AGG | 0.414593 | 7_1:+1522988 | None:intergenic |
| GAAGAGCTCATGGCAATGTT+AGG | 0.420524 | 7_1:-1524645 | Msa1004190:CDS |
| AACAAGATAACTGCTATGAT+TGG | 0.422559 | 7_1:+1522581 | None:intergenic |
| TTCTTGCATTGCACTCTTGG+AGG | 0.434118 | 7_1:+1522946 | None:intergenic |
| CTATTATATACTTCTTGGAT+TGG | 0.443539 | 7_1:-1526122 | Msa1004190:CDS |
| TGTTTCTAATACAGGCGAAA+TGG | 0.446396 | 7_1:-1526147 | Msa1004190:intron |
| GAAGAGCCTCTTTCAGAAAT+GGG | 0.456696 | 7_1:-1522994 | Msa1004190:three_prime_UTR |
| CTTTCAAGGATACATTTGAA+TGG | 0.460817 | 7_1:+1524599 | None:intergenic |
| GGTTCTTCAACAGCATTAGC+AGG | 0.462571 | 7_1:+1523147 | None:intergenic |
| TGGATGTACTACTTGGCGTT+TGG | 0.468134 | 7_1:-1523651 | Msa1004190:CDS |
| AAGAACACGTTAATTGGTCT+TGG | 0.480428 | 7_1:-1527286 | Msa1004190:CDS |
| TTTAGAAAGGACTGTGATGT+TGG | 0.485502 | 7_1:+1526961 | None:intergenic |
| AATCTATTCACTGGTCGGCT+GGG | 0.490397 | 7_1:-1524474 | Msa1004190:CDS |
| AGATTTCGTATTCTATTTGG+TGG | 0.493197 | 7_1:+1522819 | None:intergenic |
| CTGATTTCGTGTGTGTCTCT+GGG | 0.494168 | 7_1:-1527356 | Msa1004190:five_prime_UTR |
| TTATTTGTTGAAATTTAGGT+TGG | 0.496495 | 7_1:-1522865 | Msa1004190:three_prime_UTR |
| GGAGACGTTCTTGTTATCGC+TGG | 0.498105 | 7_1:-1525292 | Msa1004190:CDS |
| TGTCTTATCATTTGAAGGCT+CGG | 0.499174 | 7_1:-1522554 | Msa1004190:three_prime_UTR |
| CTACAGAAGAAAGCCTCTAA+AGG | 0.503377 | 7_1:-1526899 | Msa1004190:intron |
| GAGAAGAACAACAAGGGTGA+TGG | 0.522304 | 7_1:-1527329 | Msa1004190:exon |
| CACCTTATGAACAGTTGTGA+AGG | 0.528488 | 7_1:-1525708 | Msa1004190:intron |
| GGTTGATTGGATGTACTACT+TGG | 0.533288 | 7_1:-1523658 | Msa1004190:CDS |
| GATTTCGTATTCTATTTGGT+GGG | 0.534105 | 7_1:+1522820 | None:intergenic |
| ATGAGCTTAAATCTATTCAC+TGG | 0.535645 | 7_1:-1524483 | Msa1004190:CDS |
| ATCTATTCACTGGTCGGCTG+GGG | 0.536644 | 7_1:-1524473 | Msa1004190:CDS |
| AGTGTAATCAATAATTAATG+AGG | 0.537118 | 7_1:+1527404 | None:intergenic |
| GCAATGTTAGGTCTCTTTGG+TGG | 0.537905 | 7_1:-1524633 | Msa1004190:CDS |
| TATACTTTCTTAAGCTACCC+AGG | 0.539167 | 7_1:+1523050 | None:intergenic |
| TGTTGCAATCAGACAGGATG+AGG | 0.549578 | 7_1:-1523124 | Msa1004190:CDS |
| GACATTACTGAATGCATACA+AGG | 0.557186 | 7_1:+1525264 | None:intergenic |
| GTGTGATGCTACTTGACTGC+TGG | 0.567229 | 7_1:-1525661 | Msa1004190:CDS |
| CATCTTCGCTTACCATGAGA+AGG | 0.573397 | 7_1:-1523790 | Msa1004190:intron |
| CTCTTCTGACCTCAGACATG+TGG | 0.578272 | 7_1:-1523827 | Msa1004190:CDS |
| AGCTTAAGAAAGTATAGACC+TGG | 0.578972 | 7_1:-1523043 | Msa1004190:exon |
| TGCTGATAGAGAAGAGCTCA+TGG | 0.583244 | 7_1:-1524655 | Msa1004190:CDS |
| TCTCGATGGAATTTGTCATG+TGG | 0.585386 | 7_1:-1522524 | Msa1004190:three_prime_UTR |
| AGAACCTGTTGCAATCAGAC+AGG | 0.585681 | 7_1:-1523130 | Msa1004190:CDS |
| AAGCAGCATGACGCATGGAA+TGG | 0.591362 | 7_1:+1525637 | None:intergenic |
| ACTTCTTGGATTGGTTGATG+TGG | 0.592336 | 7_1:-1526113 | Msa1004190:CDS |
| CATGTAAGCAGCATGACGCA+TGG | 0.595629 | 7_1:+1525632 | None:intergenic |
| GCTTAAATCTATTCACTGGT+CGG | 0.611387 | 7_1:-1524479 | Msa1004190:CDS |
| AAATACAACTAGGACAAGGC+CGG | 0.612279 | 7_1:+1525550 | None:intergenic |
| ATAGCAAAGGAAATGTGTCT+GGG | 0.615099 | 7_1:-1523083 | Msa1004190:CDS |
| AGTTCAGCAACTCATAGCAA+AGG | 0.620241 | 7_1:-1523096 | Msa1004190:CDS |
| ATTGGGATGCGATAAATCAA+AGG | 0.622552 | 7_1:-1522615 | Msa1004190:three_prime_UTR |
| GTTCATGCTGGTGACCGTGC+AGG | 0.625656 | 7_1:-1525521 | Msa1004190:intron |
| GTTCTTCAACAGCATTAGCA+GGG | 0.626050 | 7_1:+1523148 | None:intergenic |
| TAGCATCACACTTGTAAGTG+AGG | 0.628131 | 7_1:+1525673 | None:intergenic |
| TATTTCGTCTCACAGCTCAA+CGG | 0.632141 | 7_1:-1523870 | Msa1004190:intron |
| TATAAAGCCACCTACCTGCA+CGG | 0.642251 | 7_1:+1525507 | None:intergenic |
| GTTACTGACAGACCTTCTCA+TGG | 0.642594 | 7_1:+1523778 | None:intergenic |
| GAACATCCGAAAATACAACT+AGG | 0.652850 | 7_1:+1525540 | None:intergenic |
| TAAGACAGACCACATGTCTG+AGG | 0.664215 | 7_1:+1523818 | None:intergenic |
| CCGAAAATACAACTAGGACA+AGG | 0.664542 | 7_1:+1525546 | None:intergenic |
| GGGAAGTGAGAAGAACAACA+AGG | 0.666791 | 7_1:-1527336 | Msa1004190:five_prime_UTR |
| TTCGTACCTTAAGCAGAACA+GGG | 0.675043 | 7_1:+1524001 | None:intergenic |
| TAGACCTGGAGATCCATGCA+AGG | 0.683078 | 7_1:-1523029 | Msa1004190:three_prime_UTR |
| TGCATTCAGTAATGTCAGTG+AGG | 0.688986 | 7_1:-1525257 | Msa1004190:intron |
| ATGTGTTTGTATGTGCAGTG+AGG | 0.702436 | 7_1:-1522705 | Msa1004190:three_prime_UTR |
| GGAAGTGAGAAGAACAACAA+GGG | 0.704294 | 7_1:-1527335 | Msa1004190:five_prime_UTR |
| ACAAGAACGTCTCCTAAACG+AGG | 0.721995 | 7_1:+1525301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTTTTTGTCTTA+TGG | - | chr7_1:1523095-1523114 | Msa1004190:CDS | 10.0% |
| !!! | TAAGTTTTTTAGAATAGAAA+TGG | + | chr7_1:1523283-1523302 | None:intergenic | 15.0% |
| !! | TTAACAAAAATGTCTTTAAA+CGG | + | chr7_1:1523918-1523937 | None:intergenic | 15.0% |
| !! | AAAAAACCTAATAAGTTTAT+AGG | - | chr7_1:1524191-1524210 | Msa1004190:intron | 15.0% |
| !! | AAAAATTGTTATGTTGAATT+TGG | - | chr7_1:1525284-1525303 | Msa1004190:CDS | 15.0% |
| !! | AAAATTGTTATGTTGAATTT+GGG | - | chr7_1:1525285-1525304 | Msa1004190:CDS | 15.0% |
| !! | TATGAATATAGAGTAATAAA+AGG | + | chr7_1:1525921-1525940 | None:intergenic | 15.0% |
| !!! | TATAAATATTGAGCTTTTTA+CGG | - | chr7_1:1526172-1526191 | Msa1004190:intron | 15.0% |
| !! | CATCATAAGAAAAAAATATT+TGG | + | chr7_1:1526885-1526904 | None:intergenic | 15.0% |
| !!! | CTTATTATTTGTTGAAATTT+AGG | - | chr7_1:1527224-1527243 | Msa1004190:CDS | 15.0% |
| !! | AGTGTAATCAATAATTAATG+AGG | + | chr7_1:1522692-1522711 | None:intergenic | 20.0% |
| !!! | TGATGGATATTAAGAAATAT+TGG | - | chr7_1:1522781-1522800 | Msa1004190:three_prime_UTR | 20.0% |
| !! | TAATTAAAAGGAAGTGAAAA+GGG | + | chr7_1:1522957-1522976 | None:intergenic | 20.0% |
| !! | TCATGATCAAAGTAATTAAA+AGG | + | chr7_1:1522969-1522988 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGTCTTATGGT+AGG | - | chr7_1:1523099-1523118 | Msa1004190:CDS | 20.0% |
| !! | CAAAAACACATAATTTAGAA+AGG | + | chr7_1:1523148-1523167 | None:intergenic | 20.0% |
| !! | TAAACACCTATAAACTTATT+AGG | + | chr7_1:1524200-1524219 | None:intergenic | 20.0% |
| !! | AATAAGTTTATAGGTGTTTA+TGG | - | chr7_1:1524200-1524219 | Msa1004190:intron | 20.0% |
| !!! | ATTCTCCATATATTTTTTCT+TGG | - | chr7_1:1524657-1524676 | Msa1004190:CDS | 20.0% |
| !! | TACTGATCATAATAAAAGAT+AGG | + | chr7_1:1524709-1524728 | None:intergenic | 20.0% |
| !! | TGATGATATTATCATATCAT+AGG | - | chr7_1:1524759-1524778 | Msa1004190:intron | 20.0% |
| !!! | ACTAGTTATTAGTATTGAAA+AGG | - | chr7_1:1524947-1524966 | Msa1004190:intron | 20.0% |
| !! | AAATTGTTATGTTGAATTTG+GGG | - | chr7_1:1525286-1525305 | Msa1004190:CDS | 20.0% |
| !! | AAACAAAATAACAATAACAC+GGG | + | chr7_1:1525392-1525411 | None:intergenic | 20.0% |
| !! | GAAACAAAATAACAATAACA+CGG | + | chr7_1:1525393-1525412 | None:intergenic | 20.0% |
| !! | CAATATATAATCAACTTTCA+AGG | + | chr7_1:1525511-1525530 | None:intergenic | 20.0% |
| !!! | TGAAAGTTGATTATATATTG+AGG | - | chr7_1:1525511-1525530 | Msa1004190:intron | 20.0% |
| !! | TAAACATCAACAAATTATAG+CGG | - | chr7_1:1525823-1525842 | Msa1004190:intron | 20.0% |
| !! | AGTTCATATATCAAACTAAT+TGG | + | chr7_1:1525974-1525993 | None:intergenic | 20.0% |
| !!! | ATAAATATTGAGCTTTTTAC+GGG | - | chr7_1:1526173-1526192 | Msa1004190:intron | 20.0% |
| !! | TTATGTTTATTATCAAAGTG+TGG | - | chr7_1:1526718-1526737 | Msa1004190:intron | 20.0% |
| !!! | TTATTTGTTGAAATTTAGGT+TGG | - | chr7_1:1527228-1527247 | Msa1004190:CDS | 20.0% |
| !! | AATAGATTTCGTATTCTATT+TGG | + | chr7_1:1527280-1527299 | None:intergenic | 20.0% |
| ! | TCTTCTGATTTAGCTAAAAA+AGG | - | chr7_1:1522876-1522895 | Msa1004190:three_prime_UTR | 25.0% |
| ! | AATTAAAAGGAAGTGAAAAG+GGG | + | chr7_1:1522956-1522975 | None:intergenic | 25.0% |
| ! | GTAATTAAAAGGAAGTGAAA+AGG | + | chr7_1:1522958-1522977 | None:intergenic | 25.0% |
| ! | TTATTCTTATGTACTCTGTT+TGG | - | chr7_1:1523224-1523243 | Msa1004190:intron | 25.0% |
| !!! | GGTTTTATTATTTGCTAAAG+AGG | - | chr7_1:1523682-1523701 | Msa1004190:intron | 25.0% |
| ! | TATCTGCAATGAAAATTGTT+TGG | - | chr7_1:1523827-1523846 | Msa1004190:CDS | 25.0% |
| !!! | CTTCATATTGTTTCTAATAC+AGG | - | chr7_1:1523938-1523957 | Msa1004190:intron | 25.0% |
| ! | TGGTACTATTATATACTTCT+TGG | - | chr7_1:1523966-1523985 | Msa1004190:intron | 25.0% |
| ! | CTATTATATACTTCTTGGAT+TGG | - | chr7_1:1523971-1523990 | Msa1004190:intron | 25.0% |
| !! | TCTTTAGGTTCTAATTTATG+AGG | - | chr7_1:1524166-1524185 | Msa1004190:intron | 25.0% |
| ! | TATAGATTCAAGAAGATAAC+TGG | - | chr7_1:1524503-1524522 | Msa1004190:CDS | 25.0% |
| ! | GACTTCCAAGAAAAAATATA+TGG | + | chr7_1:1524665-1524684 | None:intergenic | 25.0% |
| ! | TGATATTATCATATCATAGG+TGG | - | chr7_1:1524762-1524781 | Msa1004190:intron | 25.0% |
| !! | GTTATTAGTATTGAAAAGGT+TGG | - | chr7_1:1524951-1524970 | Msa1004190:intron | 25.0% |
| !! | TAATGTTCGTTTTCATTAAG+CGG | - | chr7_1:1525007-1525026 | Msa1004190:intron | 25.0% |
| ! | TCTGAATATAATAATGAGCA+TGG | + | chr7_1:1525111-1525130 | None:intergenic | 25.0% |
| ! | CAAACTGAATTTCATTCAAA+CGG | - | chr7_1:1525260-1525279 | Msa1004190:CDS | 25.0% |
| ! | GATTATATATTGAGGACTAT+TGG | - | chr7_1:1525519-1525538 | Msa1004190:intron | 25.0% |
| !!! | TTTTCATTTTGAAGCCTTAA+TGG | - | chr7_1:1525560-1525579 | Msa1004190:CDS | 25.0% |
| ! | AAGGTACGAATTTAAACATA+AGG | - | chr7_1:1526105-1526124 | Msa1004190:CDS | 25.0% |
| !!! | CATAAGGATTCTAAAGATTT+TGG | - | chr7_1:1526121-1526140 | Msa1004190:CDS | 25.0% |
| ! | AGATAGATAAAAAGGAAGTA+AGG | + | chr7_1:1526340-1526359 | None:intergenic | 25.0% |
| ! | TTTCTGTGAGATAGATAAAA+AGG | + | chr7_1:1526348-1526367 | None:intergenic | 25.0% |
| ! | ATTTGTGACTCATAATTAGT+AGG | + | chr7_1:1526375-1526394 | None:intergenic | 25.0% |
| ! | ACATGCATGAAACTTATTTA+GGG | - | chr7_1:1526799-1526818 | Msa1004190:intron | 25.0% |
| !! | GTGTTTTTGATGATTGTCTA+TGG | - | chr7_1:1523159-1523178 | Msa1004190:CDS | 30.0% |
| ! | TGCTAGCATAAACATTTTTG+CGG | + | chr7_1:1523413-1523432 | None:intergenic | 30.0% |
| CTCAAATAAGTCAATCCAAA+CGG | - | chr7_1:1523442-1523461 | Msa1004190:intron | 30.0% | |
| TGGCATAAGCACTTAATTAA+GGG | + | chr7_1:1523469-1523488 | None:intergenic | 30.0% | |
| ATGGCATAAGCACTTAATTA+AGG | + | chr7_1:1523470-1523489 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTTATAAGCTATCC+AGG | - | chr7_1:1523548-1523567 | Msa1004190:intron | 30.0% |
| TAAAACCCCATTCAGAATTA+GGG | + | chr7_1:1523669-1523688 | None:intergenic | 30.0% | |
| ATAAAACCCCATTCAGAATT+AGG | + | chr7_1:1523670-1523689 | None:intergenic | 30.0% | |
| AAAAACTAGCATCTCAACAT+TGG | + | chr7_1:1523708-1523727 | None:intergenic | 30.0% | |
| ! | GATCGATATTTAGAAAGCAT+TGG | - | chr7_1:1524048-1524067 | Msa1004190:CDS | 30.0% |
| TTGGATTATCTTCCAGATTA+TGG | - | chr7_1:1524122-1524141 | Msa1004190:intron | 30.0% | |
| TGGATTATCTTCCAGATTAT+GGG | - | chr7_1:1524123-1524142 | Msa1004190:intron | 30.0% | |
| CTCAGTTGAAATAAGTCTTT+AGG | - | chr7_1:1524151-1524170 | Msa1004190:intron | 30.0% | |
| AAGTCAACATAAAGCTAGTT+TGG | + | chr7_1:1524316-1524335 | None:intergenic | 30.0% | |
| CATCAGACAAACATGATAAA+TGG | + | chr7_1:1524744-1524763 | None:intergenic | 30.0% | |
| ! | TTATGCATTTTGCAACACTT+TGG | - | chr7_1:1524881-1524900 | Msa1004190:intron | 30.0% |
| ! | AGCCATCTTTTTATGTATCA+GGG | - | chr7_1:1525073-1525092 | Msa1004190:intron | 30.0% |
| TTCAGTTTGACAAGAAACTA+TGG | + | chr7_1:1525249-1525268 | None:intergenic | 30.0% | |
| !!! | TGTTATTTTGTTTCCATTGC+AGG | - | chr7_1:1525399-1525418 | Msa1004190:intron | 30.0% |
| TTTACTAAAAACTCCTGCAA+TGG | + | chr7_1:1525415-1525434 | None:intergenic | 30.0% | |
| CTTTCAAGGATACATTTGAA+TGG | + | chr7_1:1525497-1525516 | None:intergenic | 30.0% | |
| ATGAGCTTAAATCTATTCAC+TGG | - | chr7_1:1525610-1525629 | Msa1004190:CDS | 30.0% | |
| ! | TTATAGCGGAAATAGTTTAG+AGG | - | chr7_1:1525837-1525856 | Msa1004190:intron | 30.0% |
| GGTCTCACATAAAAAACTTT+AGG | + | chr7_1:1525900-1525919 | None:intergenic | 30.0% | |
| ! | TATCTTCCAATGTTTGTTAC+AGG | - | chr7_1:1526017-1526036 | Msa1004190:intron | 30.0% |
| !!! | TTACAGGCATTTCCTTTTTT+TGG | - | chr7_1:1526033-1526052 | Msa1004190:intron | 30.0% |
| !!! | TCCTTTTTTTGGATTTTCTG+TGG | - | chr7_1:1526044-1526063 | Msa1004190:intron | 30.0% |
| TAGAACTAATTATGCTTTCC+AGG | - | chr7_1:1526414-1526433 | Msa1004190:intron | 30.0% | |
| ACTTTCATTTCTTGTTCTGT+TGG | - | chr7_1:1526512-1526531 | Msa1004190:intron | 30.0% | |
| CTTTCATTTCTTGTTCTGTT+GGG | - | chr7_1:1526513-1526532 | Msa1004190:intron | 30.0% | |
| GACATGCATGAAACTTATTT+AGG | - | chr7_1:1526798-1526817 | Msa1004190:intron | 30.0% | |
| GATTTCGTATTCTATTTGGT+GGG | + | chr7_1:1527276-1527295 | None:intergenic | 30.0% | |
| AGATTTCGTATTCTATTTGG+TGG | + | chr7_1:1527277-1527296 | None:intergenic | 30.0% | |
| CAGCAATAATAGTGTGTTAT+TGG | - | chr7_1:1527326-1527345 | Msa1004190:exon | 30.0% | |
| AACAAGATAACTGCTATGAT+TGG | + | chr7_1:1527515-1527534 | None:intergenic | 30.0% | |
| TTGCATGTCTTATCATTTGA+AGG | - | chr7_1:1527534-1527553 | Msa1004190:intron | 30.0% | |
| !! | CCAATATGCTGATTCTGTTT+CGG | - | chr7_1:1522539-1522558 | Msa1004190:three_prime_UTR | 35.0% |
| AGAAGAGAAAGTGAAACGAA+AGG | + | chr7_1:1522574-1522593 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTTCTGAGAAGAGA+GGG | + | chr7_1:1522670-1522689 | None:intergenic | 35.0% |
| ! | AAGAACACGTTAATTGGTCT+TGG | - | chr7_1:1522807-1522826 | Msa1004190:three_prime_UTR | 35.0% |
| !! | ACGTTAATTGGTCTTGGTTT+AGG | - | chr7_1:1522813-1522832 | Msa1004190:three_prime_UTR | 35.0% |
| TTTAGAAAGGACTGTGATGT+TGG | + | chr7_1:1523135-1523154 | None:intergenic | 35.0% | |
| ! | TTTTATAAGCTATCCAGGAG+AGG | - | chr7_1:1523553-1523572 | Msa1004190:intron | 35.0% |
| !! | CTTATTTTCATTACCTCTCC+TGG | + | chr7_1:1523569-1523588 | None:intergenic | 35.0% |
| ! | AGACTAATTGGCAAAGCTTT+TGG | + | chr7_1:1523598-1523617 | None:intergenic | 35.0% |
| CATAAGCAGTTGAGACTAAT+TGG | + | chr7_1:1523610-1523629 | None:intergenic | 35.0% | |
| ATTCAGAATTAGGGTCTGTT+AGG | + | chr7_1:1523660-1523679 | None:intergenic | 35.0% | |
| TAACAGACCCTAATTCTGAA+TGG | - | chr7_1:1523659-1523678 | Msa1004190:CDS | 35.0% | |
| AACAGACCCTAATTCTGAAT+GGG | - | chr7_1:1523660-1523679 | Msa1004190:CDS | 35.0% | |
| !! | ATCATGGGCCATTTTCTTTA+TGG | - | chr7_1:1523765-1523784 | Msa1004190:intron | 35.0% |
| !! | TCATGGGCCATTTTCTTTAT+GGG | - | chr7_1:1523766-1523785 | Msa1004190:intron | 35.0% |
| AGCAGTTCCCATAAAGAAAA+TGG | + | chr7_1:1523776-1523795 | None:intergenic | 35.0% | |
| TTCTTTATGGGAACTGCTTA+TGG | - | chr7_1:1523778-1523797 | Msa1004190:intron | 35.0% | |
| TCTTTATGGGAACTGCTTAT+GGG | - | chr7_1:1523779-1523798 | Msa1004190:intron | 35.0% | |
| ! | CTTATGGGAAGTATAAGAGA+TGG | - | chr7_1:1523794-1523813 | Msa1004190:CDS | 35.0% |
| ACAGGGCAGAAATAACATAA+CGG | + | chr7_1:1523877-1523896 | None:intergenic | 35.0% | |
| ! | TGTTTCTAATACAGGCGAAA+TGG | - | chr7_1:1523946-1523965 | Msa1004190:intron | 35.0% |
| ! | GATGTGGAAGCAAATTTTCT+TGG | - | chr7_1:1523996-1524015 | Msa1004190:intron | 35.0% |
| TGGTAAGTGAGTATCTTTGA+TGG | - | chr7_1:1524016-1524035 | Msa1004190:CDS | 35.0% | |
| TAAACAATACCCCACTAGTT+TGG | - | chr7_1:1524103-1524122 | Msa1004190:intron | 35.0% | |
| GAAGATAATCCAAACTAGTG+GGG | + | chr7_1:1524115-1524134 | None:intergenic | 35.0% | |
| GGAAGATAATCCAAACTAGT+GGG | + | chr7_1:1524116-1524135 | None:intergenic | 35.0% | |
| TGGAAGATAATCCAAACTAG+TGG | + | chr7_1:1524117-1524136 | None:intergenic | 35.0% | |
| ! | CCTTGTCCTAGTTGTATTTT+CGG | - | chr7_1:1524547-1524566 | Msa1004190:intron | 35.0% |
| GAACATCCGAAAATACAACT+AGG | + | chr7_1:1524556-1524575 | None:intergenic | 35.0% | |
| ! | ACGTGTGTGCATAAGTTTTT+AGG | + | chr7_1:1524625-1524644 | None:intergenic | 35.0% |
| GACATTACTGAATGCATACA+AGG | + | chr7_1:1524832-1524851 | None:intergenic | 35.0% | |
| ! | GAGCCATCTTTTTATGTATC+AGG | - | chr7_1:1525072-1525091 | Msa1004190:intron | 35.0% |
| TGCCCTGATACATAAAAAGA+TGG | + | chr7_1:1525078-1525097 | None:intergenic | 35.0% | |
| AGCTCTGTAAATGACCATTA+AGG | + | chr7_1:1525577-1525596 | None:intergenic | 35.0% | |
| GCTTAAATCTATTCACTGGT+CGG | - | chr7_1:1525614-1525633 | Msa1004190:CDS | 35.0% | |
| CAAAAGATGAGAAGAAGCTA+AGG | - | chr7_1:1525760-1525779 | Msa1004190:intron | 35.0% | |
| AGCTAAGGAAGTTTAAACTC+AGG | - | chr7_1:1525775-1525794 | Msa1004190:intron | 35.0% | |
| TTACTCTTCATCAATCCAAG+AGG | + | chr7_1:1525806-1525825 | None:intergenic | 35.0% | |
| GAAATGCCTGTAACAAACAT+TGG | + | chr7_1:1526026-1526045 | None:intergenic | 35.0% | |
| GCCACAGAAAATCCAAAAAA+AGG | + | chr7_1:1526048-1526067 | None:intergenic | 35.0% | |
| !! | ATTATGCTTTCCAGGTTGAT+TGG | - | chr7_1:1526422-1526441 | Msa1004190:intron | 35.0% |
| !!! | CTGTTGGGATTCTTTTTTTC+TGG | - | chr7_1:1526528-1526547 | Msa1004190:intron | 35.0% |
| ! | TGTGGCTTTTGCTAAAATCA+CGG | - | chr7_1:1526736-1526755 | Msa1004190:intron | 35.0% |
| GAGATATCCTTAGTCTGTAA+TGG | - | chr7_1:1526858-1526877 | Msa1004190:intron | 35.0% | |
| ATTTGGTCCATTACAGACTA+AGG | + | chr7_1:1526868-1526887 | None:intergenic | 35.0% | |
| TATACTTTCTTAAGCTACCC+AGG | + | chr7_1:1527046-1527065 | None:intergenic | 35.0% | |
| ! | AGCTTAAGAAAGTATAGACC+TGG | - | chr7_1:1527050-1527069 | Msa1004190:intron | 35.0% |
| AACGCTACAATTTGTAGCTT+CGG | - | chr7_1:1527435-1527454 | Msa1004190:five_prime_UTR | 35.0% | |
| AACGCACGATAAAAAGACAT+TGG | - | chr7_1:1527460-1527479 | Msa1004190:intron | 35.0% | |
| ACGCACGATAAAAAGACATT+GGG | - | chr7_1:1527461-1527480 | Msa1004190:intron | 35.0% | |
| ATTGGGATGCGATAAATCAA+AGG | - | chr7_1:1527478-1527497 | Msa1004190:intron | 35.0% | |
| TGTCTTATCATTTGAAGGCT+CGG | - | chr7_1:1527539-1527558 | Msa1004190:intron | 35.0% | |
| CCGAAACAGAATCAGCATAT+TGG | + | chr7_1:1522542-1522561 | None:intergenic | 40.0% | |
| !!! | GGTTGTTTTTCTGAGAAGAG+AGG | + | chr7_1:1522671-1522690 | None:intergenic | 40.0% |
| GGAAGTGAGAAGAACAACAA+GGG | - | chr7_1:1522758-1522777 | Msa1004190:three_prime_UTR | 40.0% | |
| TGGACGAAGAACACGTTAAT+TGG | - | chr7_1:1522801-1522820 | Msa1004190:three_prime_UTR | 40.0% | |
| CTACAGAAGAAAGCCTCTAA+AGG | - | chr7_1:1523194-1523213 | Msa1004190:intron | 40.0% | |
| GAATAAGCAAGCACCTTTAG+AGG | + | chr7_1:1523210-1523229 | None:intergenic | 40.0% | |
| CACTTAATTAAGGGTCCGTT+TGG | + | chr7_1:1523460-1523479 | None:intergenic | 40.0% | |
| !! | ACAGAAGTGTTTGTGCTGTA+TGG | + | chr7_1:1523489-1523508 | None:intergenic | 40.0% |
| ACAGACCCTAATTCTGAATG+GGG | - | chr7_1:1523661-1523680 | Msa1004190:intron | 40.0% | |
| TGTAGCAAACCCTTCAATCA+TGG | - | chr7_1:1523749-1523768 | Msa1004190:intron | 40.0% | |
| GTAGCAAACCCTTCAATCAT+GGG | - | chr7_1:1523750-1523769 | Msa1004190:intron | 40.0% | |
| GAAAATGGCCCATGATTGAA+GGG | + | chr7_1:1523761-1523780 | None:intergenic | 40.0% | |
| AGAAAATGGCCCATGATTGA+AGG | + | chr7_1:1523762-1523781 | None:intergenic | 40.0% | |
| TGACAGTGAGAGGAAAAACA+GGG | + | chr7_1:1523894-1523913 | None:intergenic | 40.0% | |
| TTGACAGTGAGAGGAAAAAC+AGG | + | chr7_1:1523895-1523914 | None:intergenic | 40.0% | |
| TTTAAACGGTTGACAGTGAG+AGG | + | chr7_1:1523904-1523923 | None:intergenic | 40.0% | |
| !! | ACTTCTTGGATTGGTTGATG+TGG | - | chr7_1:1523980-1523999 | Msa1004190:intron | 40.0% |
| ACTGAGAAGATCCCATAATC+TGG | + | chr7_1:1524137-1524156 | None:intergenic | 40.0% | |
| CACCTTATGAACAGTTGTGA+AGG | - | chr7_1:1524385-1524404 | Msa1004190:intron | 40.0% | |
| TGCCTTCACAACTGTTCATA+AGG | + | chr7_1:1524390-1524409 | None:intergenic | 40.0% | |
| TAGCATCACACTTGTAAGTG+AGG | + | chr7_1:1524423-1524442 | None:intergenic | 40.0% | |
| GGTGTAATTGTTTGCATAGC+CGG | - | chr7_1:1524524-1524543 | Msa1004190:intron | 40.0% | |
| AAATACAACTAGGACAAGGC+CGG | + | chr7_1:1524546-1524565 | None:intergenic | 40.0% | |
| CCGAAAATACAACTAGGACA+AGG | + | chr7_1:1524550-1524569 | None:intergenic | 40.0% | |
| ! | GTATTTTCGGATGTTCATGC+TGG | - | chr7_1:1524560-1524579 | Msa1004190:intron | 40.0% |
| TGCATTCAGTAATGTCAGTG+AGG | - | chr7_1:1524836-1524855 | Msa1004190:intron | 40.0% | |
| AAACTCACTGCAAGTGTTTC+AGG | - | chr7_1:1525050-1525069 | Msa1004190:intron | 40.0% | |
| GTAAATGCAAGCCCATAAGT+AGG | + | chr7_1:1525223-1525242 | None:intergenic | 40.0% | |
| AAGTGACGCAAGTGCATAAA+AGG | + | chr7_1:1525339-1525358 | None:intergenic | 40.0% | |
| ATGGCAATGTTAGGTCTCTT+TGG | - | chr7_1:1525457-1525476 | Msa1004190:intron | 40.0% | |
| TAAACTCAGGATAAGCCTCT+TGG | - | chr7_1:1525788-1525807 | Msa1004190:intron | 40.0% | |
| TTCGTACCTTAAGCAGAACA+GGG | + | chr7_1:1526095-1526114 | None:intergenic | 40.0% | |
| ATTCGTACCTTAAGCAGAAC+AGG | + | chr7_1:1526096-1526115 | None:intergenic | 40.0% | |
| TATTTCGTCTCACAGCTCAA+CGG | - | chr7_1:1526223-1526242 | Msa1004190:intron | 40.0% | |
| AGTAGTACATCCAATCAACC+TGG | + | chr7_1:1526435-1526454 | None:intergenic | 40.0% | |
| GGTTGATTGGATGTACTACT+TGG | - | chr7_1:1526435-1526454 | Msa1004190:intron | 40.0% | |
| TCAGCATTGTCAATCGTGTT+GGG | - | chr7_1:1526692-1526711 | Msa1004190:intron | 40.0% | |
| TGAATAGACGATGAGTTTGG+TGG | + | chr7_1:1526778-1526797 | None:intergenic | 40.0% | |
| GTCTGAATAGACGATGAGTT+TGG | + | chr7_1:1526781-1526800 | None:intergenic | 40.0% | |
| GTTCTTCAACAGCATTAGCA+GGG | + | chr7_1:1526948-1526967 | None:intergenic | 40.0% | |
| ! | CTTCATGGTTTTTCCTTGCA+TGG | + | chr7_1:1527080-1527099 | None:intergenic | 40.0% |
| AGAAGAGCCTCTTTCAGAAA+TGG | - | chr7_1:1527098-1527117 | Msa1004190:intron | 40.0% | |
| GAAGAGCCTCTTTCAGAAAT+GGG | - | chr7_1:1527099-1527118 | Msa1004190:intron | 40.0% | |
| ! | GAATAGCCCATTTCTGAAAG+AGG | + | chr7_1:1527108-1527127 | None:intergenic | 40.0% |
| ATGTGTTTGTATGTGCAGTG+AGG | - | chr7_1:1527388-1527407 | Msa1004190:five_prime_UTR | 40.0% | |
| TCTCGATGGAATTTGTCATG+TGG | - | chr7_1:1527569-1527588 | Msa1004190:five_prime_UTR | 40.0% | |
| TCTGATTTCGTGTGTGTCTC+TGG | - | chr7_1:1522736-1522755 | Msa1004190:three_prime_UTR | 45.0% | |
| CTGATTTCGTGTGTGTCTCT+GGG | - | chr7_1:1522737-1522756 | Msa1004190:three_prime_UTR | 45.0% | |
| GGGAAGTGAGAAGAACAACA+AGG | - | chr7_1:1522757-1522776 | Msa1004190:three_prime_UTR | 45.0% | |
| GAGAAGAACAACAAGGGTGA+TGG | - | chr7_1:1522764-1522783 | Msa1004190:three_prime_UTR | 45.0% | |
| TCTCTTCTCATCACTGCTAC+TGG | - | chr7_1:1522846-1522865 | Msa1004190:three_prime_UTR | 45.0% | |
| TATAAAGCCACCTACCTGCA+CGG | + | chr7_1:1524589-1524608 | None:intergenic | 45.0% | |
| GGTGGAAGTAATCCTCGTTT+AGG | - | chr7_1:1524780-1524799 | Msa1004190:intron | 45.0% | |
| ACAAGAACGTCTCCTAAACG+AGG | + | chr7_1:1524795-1524814 | None:intergenic | 45.0% | |
| TGTCTTTCCATGATTGCCTG+TGG | - | chr7_1:1525197-1525216 | Msa1004190:intron | 45.0% | |
| ATTGCCTGTGGCCTACTTAT+GGG | - | chr7_1:1525209-1525228 | Msa1004190:intron | 45.0% | |
| TGCTGATAGAGAAGAGCTCA+TGG | - | chr7_1:1525438-1525457 | Msa1004190:intron | 45.0% | |
| GAAGAGCTCATGGCAATGTT+AGG | - | chr7_1:1525448-1525467 | Msa1004190:intron | 45.0% | |
| GCAATGTTAGGTCTCTTTGG+TGG | - | chr7_1:1525460-1525479 | Msa1004190:intron | 45.0% | |
| AAATCTATTCACTGGTCGGC+TGG | - | chr7_1:1525618-1525637 | Msa1004190:CDS | 45.0% | |
| AATCTATTCACTGGTCGGCT+GGG | - | chr7_1:1525619-1525638 | Msa1004190:CDS | 45.0% | |
| TCTAGTCCCTGTTCTGCTTA+AGG | - | chr7_1:1526086-1526105 | Msa1004190:intron | 45.0% | |
| TAAGACAGACCACATGTCTG+AGG | + | chr7_1:1526278-1526297 | None:intergenic | 45.0% | |
| CATCTTCGCTTACCATGAGA+AGG | - | chr7_1:1526303-1526322 | Msa1004190:intron | 45.0% | |
| GTTACTGACAGACCTTCTCA+TGG | + | chr7_1:1526318-1526337 | None:intergenic | 45.0% | |
| TGGATGTACTACTTGGCGTT+TGG | - | chr7_1:1526442-1526461 | Msa1004190:intron | 45.0% | |
| CTCAGCATTGTCAATCGTGT+TGG | - | chr7_1:1526691-1526710 | Msa1004190:intron | 45.0% | |
| CAGCATTGTCAATCGTGTTG+GGG | - | chr7_1:1526693-1526712 | Msa1004190:intron | 45.0% | |
| ! | GGCTTTTGCTAAAATCACGG+TGG | - | chr7_1:1526739-1526758 | Msa1004190:intron | 45.0% |
| GATGTTTCGTCGTATTGCAG+AGG | - | chr7_1:1526901-1526920 | Msa1004190:CDS | 45.0% | |
| ! | TCGTCGTATTGCAGAGGTTT+TGG | - | chr7_1:1526907-1526926 | Msa1004190:CDS | 45.0% |
| GGTTCTTCAACAGCATTAGC+AGG | + | chr7_1:1526949-1526968 | None:intergenic | 45.0% | |
| AGAACCTGTTGCAATCAGAC+AGG | - | chr7_1:1526963-1526982 | Msa1004190:CDS | 45.0% | |
| TCATCCTGTCTGATTGCAAC+AGG | + | chr7_1:1526970-1526989 | None:intergenic | 45.0% | |
| TGTTGCAATCAGACAGGATG+AGG | - | chr7_1:1526969-1526988 | Msa1004190:CDS | 45.0% | |
| ! | TTTTCCTTGCATGGATCTCC+AGG | + | chr7_1:1527071-1527090 | None:intergenic | 45.0% |
| CTGAAAGAGGCTCTTCTTCA+TGG | + | chr7_1:1527095-1527114 | None:intergenic | 45.0% | |
| TTCTTGCATTGCACTCTTGG+AGG | + | chr7_1:1527150-1527169 | None:intergenic | 45.0% | |
| TGCTTCTTGCATTGCACTCT+TGG | + | chr7_1:1527153-1527172 | None:intergenic | 45.0% | |
| ! | GTGTGATGCTACTTGACTGC+TGG | - | chr7_1:1524432-1524451 | Msa1004190:intron | 50.0% |
| AAGCAGCATGACGCATGGAA+TGG | + | chr7_1:1524459-1524478 | None:intergenic | 50.0% | |
| CATGTAAGCAGCATGACGCA+TGG | + | chr7_1:1524464-1524483 | None:intergenic | 50.0% | |
| ! | CATGCGTCATGCTGCTTACA+TGG | - | chr7_1:1524462-1524481 | Msa1004190:intron | 50.0% |
| ! | GGAGACGTTCTTGTTATCGC+TGG | - | chr7_1:1524801-1524820 | Msa1004190:intron | 50.0% |
| AAGTAGGCCACAGGCAATCA+TGG | + | chr7_1:1525207-1525226 | None:intergenic | 50.0% | |
| GATTGCCTGTGGCCTACTTA+TGG | - | chr7_1:1525208-1525227 | Msa1004190:intron | 50.0% | |
| ATCTATTCACTGGTCGGCTG+GGG | - | chr7_1:1525620-1525639 | Msa1004190:CDS | 50.0% | |
| CTCTTCTGACCTCAGACATG+TGG | - | chr7_1:1526266-1526285 | Msa1004190:intron | 50.0% | |
| !! | GCGTTTGGTGCTGTTGTCAT+TGG | - | chr7_1:1526457-1526476 | Msa1004190:intron | 50.0% |
| !!! | TTGCAGAGGTTTTGGAGACG+AGG | - | chr7_1:1526915-1526934 | Msa1004190:CDS | 50.0% |
| TGTCTGGGAGCTCAAAAACC+TGG | - | chr7_1:1527025-1527044 | Msa1004190:intron | 50.0% | |
| GTCTGGGAGCTCAAAAACCT+GGG | - | chr7_1:1527026-1527045 | Msa1004190:intron | 50.0% | |
| TAGACCTGGAGATCCATGCA+AGG | - | chr7_1:1527064-1527083 | Msa1004190:intron | 50.0% | |
| !! | GGCTCGGTATTTTCTCTCGA+TGG | - | chr7_1:1527555-1527574 | Msa1004190:five_prime_UTR | 50.0% |
| CAAGCCCATAAGTAGGCCAC+AGG | + | chr7_1:1525216-1525235 | None:intergenic | 55.0% | |
| GTTCATGCTGGTGACCGTGC+AGG | - | chr7_1:1524572-1524591 | Msa1004190:intron | 60.0% | |
| ATGCTGGTGACCGTGCAGGT+AGG | - | chr7_1:1524576-1524595 | Msa1004190:intron | 60.0% | |
| CTGGTGACCGTGCAGGTAGG+TGG | - | chr7_1:1524579-1524598 | Msa1004190:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 1522517 | 1527598 | 1522517 | ID=Msa1004190;Name=Msa1004190 |
| chr7_1 | mRNA | 1522517 | 1527598 | 1522517 | ID=Msa1004190-mRNA-1;Parent=Msa1004190;Name=Msa1004190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=202|1|1|1|0.90|0.83|12|542|342 |
| chr7_1 | exon | 1522517 | 1523194 | 1522517 | ID=Msa1004190-mRNA-1:exon:635;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1523618 | 1523679 | 1523618 | ID=Msa1004190-mRNA-1:exon:634;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1523791 | 1523877 | 1523791 | ID=Msa1004190-mRNA-1:exon:633;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1524008 | 1524076 | 1524008 | ID=Msa1004190-mRNA-1:exon:632;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1524471 | 1524522 | 1524471 | ID=Msa1004190-mRNA-1:exon:631;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1524612 | 1524694 | 1524612 | ID=Msa1004190-mRNA-1:exon:630;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1525258 | 1525334 | 1525258 | ID=Msa1004190-mRNA-1:exon:629;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1525522 | 1525716 | 1525522 | ID=Msa1004190-mRNA-1:exon:628;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1526098 | 1526155 | 1526098 | ID=Msa1004190-mRNA-1:exon:627;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1526900 | 1526994 | 1526900 | ID=Msa1004190-mRNA-1:exon:626;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1527218 | 1527477 | 1527218 | ID=Msa1004190-mRNA-1:exon:625;Parent=Msa1004190-mRNA-1 |
| chr7_1 | exon | 1527542 | 1527598 | 1527542 | ID=Msa1004190-mRNA-1:exon:624;Parent=Msa1004190-mRNA-1 |
| chr7_1 | five_prime_UTR | 1527542 | 1527598 | 1527542 | ID=Msa1004190-mRNA-1:five_prime_utr;Parent=Msa1004190-mRNA-1 |
| chr7_1 | five_prime_UTR | 1527333 | 1527477 | 1527333 | ID=Msa1004190-mRNA-1:five_prime_utr;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1527218 | 1527332 | 1527218 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1526900 | 1526994 | 1526900 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1526098 | 1526155 | 1526098 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1525522 | 1525716 | 1525522 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1525258 | 1525334 | 1525258 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1524612 | 1524694 | 1524612 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1524471 | 1524522 | 1524471 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1524008 | 1524076 | 1524008 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1523791 | 1523877 | 1523791 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1523618 | 1523679 | 1523618 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | CDS | 1523059 | 1523194 | 1523059 | ID=Msa1004190-mRNA-1:cds;Parent=Msa1004190-mRNA-1 |
| chr7_1 | three_prime_UTR | 1522517 | 1523058 | 1522517 | ID=Msa1004190-mRNA-1:three_prime_utr;Parent=Msa1004190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
