Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004380 | XP_039690591.1 | 69.697 | 165 | 40 | 1 | 76 | 230 | 190 | 354 | 8.57e-68 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004380 | A0A2K3N4C6 | 56.831 | 183 | 69 | 1 | 58 | 230 | 153 | 335 | 8.08e-65 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1004380 | Msa1004390 | 0.896929 | 2.299185e-76 | -8.615850e-47 |
| Msa1004380 | Msa1253030 | 0.800265 | 1.563159e-48 | -8.615850e-47 |
| Msa1004380 | Msa1284680 | 0.805425 | 1.343216e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004380 | MtrunA17_Chr3g0101871 | 53.333 | 165 | 67 | 1 | 76 | 230 | 332 | 496 | 7.63e-51 | 177 |
| Msa1004380 | MtrunA17_Chr7g0269651 | 38.788 | 165 | 90 | 1 | 77 | 230 | 383 | 547 | 3.36e-31 | 120 |
| Msa1004380 | MtrunA17_Chr1g0206491 | 39.130 | 161 | 87 | 1 | 81 | 230 | 303 | 463 | 3.81e-29 | 114 |
| Msa1004380 | MtrunA17_Chr1g0173671 | 35.326 | 184 | 95 | 5 | 69 | 230 | 356 | 537 | 6.64e-26 | 105 |
| Msa1004380 | MtrunA17_Chr5g0400991 | 38.400 | 125 | 66 | 1 | 117 | 230 | 3 | 127 | 4.32e-23 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAAGTTGCTGCAATTTC+TGG | 0.115193 | 7_1:+1872038 | None:intergenic |
| TGAGTTTCATGCCAGTTATT+TGG | 0.206327 | 7_1:-1870846 | Msa1004380:CDS |
| CTCTCCATATGTGAAAATTA+AGG | 0.247996 | 7_1:+1870811 | None:intergenic |
| GAGTTTCATGCCAGTTATTT+GGG | 0.281522 | 7_1:-1870845 | Msa1004380:CDS |
| ATGTGAAAATTAAGGGATAT+TGG | 0.328424 | 7_1:+1870819 | None:intergenic |
| AAACTGTTGGAATAGTTTCC+TGG | 0.335244 | 7_1:+1870652 | None:intergenic |
| CAAATTGTTGGTTTGTGGTT+TGG | 0.338055 | 7_1:+1871931 | None:intergenic |
| CTATGACTTTGATTTGTTCC+AGG | 0.347727 | 7_1:-1870670 | Msa1004380:CDS |
| AGTCTATATCTCCGTCAATC+AGG | 0.348760 | 7_1:+1870927 | None:intergenic |
| GCACAACCGTTTGACTATAA+AGG | 0.385568 | 7_1:-1870732 | Msa1004380:CDS |
| AGGTATCTTATTAAGATATA+AGG | 0.386097 | 7_1:-1870774 | Msa1004380:CDS |
| CTGGTATTGTTGCAGAAAAT+CGG | 0.387040 | 7_1:+1872057 | None:intergenic |
| TCTCCATATGTGAAAATTAA+GGG | 0.399604 | 7_1:+1870812 | None:intergenic |
| ATGATGAATAATCAAATTGT+TGG | 0.412321 | 7_1:+1871919 | None:intergenic |
| ATATTGGAAACCCAAATAAC+TGG | 0.425409 | 7_1:+1870835 | None:intergenic |
| AGTCATAGCCTCACATAGTC+TGG | 0.427674 | 7_1:+1870685 | None:intergenic |
| GAAGTAGCTGCCCTGATTGA+CGG | 0.458398 | 7_1:-1870938 | Msa1004380:CDS |
| ATAATCAAATTGTTGGTTTG+TGG | 0.479082 | 7_1:+1871926 | None:intergenic |
| TGGTTTGTGGTTTGGTGTTG+AGG | 0.480404 | 7_1:+1871939 | None:intergenic |
| ATTTCAGATCGGAACAATGA+TGG | 0.486958 | 7_1:-1870989 | Msa1004380:CDS |
| GCCATGCCTTTATAGTCAAA+CGG | 0.503688 | 7_1:+1870726 | None:intergenic |
| ATCAAATAAGGGTATTGATG+AGG | 0.537308 | 7_1:-1871128 | Msa1004380:CDS |
| AATTGAAGCTTATTTCAGAT+CGG | 0.544606 | 7_1:-1871000 | Msa1004380:CDS |
| GTCTATATCTCCGTCAATCA+GGG | 0.565246 | 7_1:+1870928 | None:intergenic |
| GCATGCACAGGCTTTCAGAA+TGG | 0.566296 | 7_1:-1871062 | Msa1004380:CDS |
| GCAGCTACTTCTGACACAGT+TGG | 0.567179 | 7_1:+1870950 | None:intergenic |
| TCAAATAAGGGTATTGATGA+GGG | 0.572285 | 7_1:-1871127 | Msa1004380:CDS |
| TTATATCTTAATAAGATACC+TGG | 0.582499 | 7_1:+1870776 | None:intergenic |
| GGAGAGGATGGATATCGTCC+AGG | 0.584813 | 7_1:-1870794 | Msa1004380:CDS |
| TGCAAACAATGTGCATGCAC+AGG | 0.607446 | 7_1:-1871074 | Msa1004380:CDS |
| ACCGTTTGACTATAAAGGCA+TGG | 0.623638 | 7_1:-1870727 | Msa1004380:CDS |
| ACTAATGTCCAGACTATGTG+AGG | 0.652666 | 7_1:-1870693 | Msa1004380:CDS |
| ACTTCTGTAATACCGCCTCG+AGG | 0.744489 | 7_1:-1872023 | Msa1004380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAACACATAATTTTTATA+TGG | - | chr7_1:1871043-1871062 | Msa1004380:CDS | 10.0% |
| !!! | TATAACACATAATTTTTATA+TGG | - | chr7_1:1871043-1871062 | Msa1004380:CDS | 10.0% |
| !! | ATGATGAATAATCAAATTGT+TGG | + | chr7_1:1870831-1870850 | None:intergenic | 20.0% |
| !!! | CATAATTTTTATATGGATAC+AGG | - | chr7_1:1871050-1871069 | Msa1004380:CDS | 20.0% |
| !! | ATCATTCAAATAGTTTAGTA+TGG | - | chr7_1:1871563-1871582 | Msa1004380:intron | 20.0% |
| !!! | CAATTTTACAGATCAAATAA+GGG | - | chr7_1:1871608-1871627 | Msa1004380:intron | 20.0% |
| !! | TTATATCTTAATAAGATACC+TGG | + | chr7_1:1871974-1871993 | None:intergenic | 20.0% |
| !! | AGGTATCTTATTAAGATATA+AGG | - | chr7_1:1871973-1871992 | Msa1004380:CDS | 20.0% |
| !! | ATGATGAATAATCAAATTGT+TGG | + | chr7_1:1870831-1870850 | None:intergenic | 20.0% |
| !!! | CATAATTTTTATATGGATAC+AGG | - | chr7_1:1871050-1871069 | Msa1004380:CDS | 20.0% |
| !! | ATCATTCAAATAGTTTAGTA+TGG | - | chr7_1:1871563-1871582 | Msa1004380:intron | 20.0% |
| !!! | CAATTTTACAGATCAAATAA+GGG | - | chr7_1:1871608-1871627 | Msa1004380:intron | 20.0% |
| !! | TTATATCTTAATAAGATACC+TGG | + | chr7_1:1871974-1871993 | None:intergenic | 20.0% |
| !! | AGGTATCTTATTAAGATATA+AGG | - | chr7_1:1871973-1871992 | Msa1004380:CDS | 20.0% |
| !!! | ATAATCAAATTGTTGGTTTG+TGG | + | chr7_1:1870824-1870843 | None:intergenic | 25.0% |
| ! | AGATTAAACATGATTGTACT+GGG | + | chr7_1:1870979-1870998 | None:intergenic | 25.0% |
| ! | AAGATTAAACATGATTGTAC+TGG | + | chr7_1:1870980-1870999 | None:intergenic | 25.0% |
| ! | AAAATTTCCAAGCTAACATT+AGG | - | chr7_1:1871279-1871298 | Msa1004380:intron | 25.0% |
| !! | GCAATTTTACAGATCAAATA+AGG | - | chr7_1:1871607-1871626 | Msa1004380:intron | 25.0% |
| ! | AATTGAAGCTTATTTCAGAT+CGG | - | chr7_1:1871747-1871766 | Msa1004380:intron | 25.0% |
| ! | ATGTGAAAATTAAGGGATAT+TGG | + | chr7_1:1871931-1871950 | None:intergenic | 25.0% |
| !! | TATCCCTTAATTTTCACATA+TGG | - | chr7_1:1871932-1871951 | Msa1004380:CDS | 25.0% |
| ! | TCTCCATATGTGAAAATTAA+GGG | + | chr7_1:1871938-1871957 | None:intergenic | 25.0% |
| !!! | ATAATCAAATTGTTGGTTTG+TGG | + | chr7_1:1870824-1870843 | None:intergenic | 25.0% |
| ! | AGATTAAACATGATTGTACT+GGG | + | chr7_1:1870979-1870998 | None:intergenic | 25.0% |
| ! | AAGATTAAACATGATTGTAC+TGG | + | chr7_1:1870980-1870999 | None:intergenic | 25.0% |
| ! | AAAATTTCCAAGCTAACATT+AGG | - | chr7_1:1871279-1871298 | Msa1004380:intron | 25.0% |
| !! | GCAATTTTACAGATCAAATA+AGG | - | chr7_1:1871607-1871626 | Msa1004380:intron | 25.0% |
| ! | AATTGAAGCTTATTTCAGAT+CGG | - | chr7_1:1871747-1871766 | Msa1004380:intron | 25.0% |
| ! | ATGTGAAAATTAAGGGATAT+TGG | + | chr7_1:1871931-1871950 | None:intergenic | 25.0% |
| !! | TATCCCTTAATTTTCACATA+TGG | - | chr7_1:1871932-1871951 | Msa1004380:CDS | 25.0% |
| ! | TCTCCATATGTGAAAATTAA+GGG | + | chr7_1:1871938-1871957 | None:intergenic | 25.0% |
| GATTAAACATGATTGTACTG+GGG | + | chr7_1:1870978-1870997 | None:intergenic | 30.0% | |
| GATACAGGTTATTCTGATAT+AGG | - | chr7_1:1871065-1871084 | Msa1004380:CDS | 30.0% | |
| ! | AACAGTAGATTTTGAATGAG+AGG | + | chr7_1:1871236-1871255 | None:intergenic | 30.0% |
| TATATGTCCTAATGTTAGCT+TGG | + | chr7_1:1871289-1871308 | None:intergenic | 30.0% | |
| ! | TTATCATCCATTTTCATTCC+AGG | + | chr7_1:1871335-1871354 | None:intergenic | 30.0% |
| ATGGATGATAACATGAACAA+AGG | - | chr7_1:1871344-1871363 | Msa1004380:intron | 30.0% | |
| ! | ATGTAGAGTTGAGCAAATTT+TGG | + | chr7_1:1871449-1871468 | None:intergenic | 30.0% |
| TCATTAAAGTAGTTACCTGA+AGG | + | chr7_1:1871510-1871529 | None:intergenic | 30.0% | |
| !! | ATCAAATAAGGGTATTGATG+AGG | - | chr7_1:1871619-1871638 | Msa1004380:intron | 30.0% |
| !! | TCAAATAAGGGTATTGATGA+GGG | - | chr7_1:1871620-1871639 | Msa1004380:intron | 30.0% |
| ATATTGGAAACCCAAATAAC+TGG | + | chr7_1:1871915-1871934 | None:intergenic | 30.0% | |
| CTCTCCATATGTGAAAATTA+AGG | + | chr7_1:1871939-1871958 | None:intergenic | 30.0% | |
| ! | CTTAATTTTCACATATGGAG+AGG | - | chr7_1:1871937-1871956 | Msa1004380:CDS | 30.0% |
| GATTAAACATGATTGTACTG+GGG | + | chr7_1:1870978-1870997 | None:intergenic | 30.0% | |
| GATACAGGTTATTCTGATAT+AGG | - | chr7_1:1871065-1871084 | Msa1004380:CDS | 30.0% | |
| ! | AACAGTAGATTTTGAATGAG+AGG | + | chr7_1:1871236-1871255 | None:intergenic | 30.0% |
| TATATGTCCTAATGTTAGCT+TGG | + | chr7_1:1871289-1871308 | None:intergenic | 30.0% | |
| ! | TTATCATCCATTTTCATTCC+AGG | + | chr7_1:1871335-1871354 | None:intergenic | 30.0% |
| ATGGATGATAACATGAACAA+AGG | - | chr7_1:1871344-1871363 | Msa1004380:intron | 30.0% | |
| ! | ATGTAGAGTTGAGCAAATTT+TGG | + | chr7_1:1871449-1871468 | None:intergenic | 30.0% |
| TCATTAAAGTAGTTACCTGA+AGG | + | chr7_1:1871510-1871529 | None:intergenic | 30.0% | |
| !! | ATCAAATAAGGGTATTGATG+AGG | - | chr7_1:1871619-1871638 | Msa1004380:intron | 30.0% |
| !! | TCAAATAAGGGTATTGATGA+GGG | - | chr7_1:1871620-1871639 | Msa1004380:intron | 30.0% |
| ATATTGGAAACCCAAATAAC+TGG | + | chr7_1:1871915-1871934 | None:intergenic | 30.0% | |
| CTCTCCATATGTGAAAATTA+AGG | + | chr7_1:1871939-1871958 | None:intergenic | 30.0% | |
| ! | CTTAATTTTCACATATGGAG+AGG | - | chr7_1:1871937-1871956 | Msa1004380:CDS | 30.0% |
| CTGGTATTGTTGCAGAAAAT+CGG | + | chr7_1:1870693-1870712 | None:intergenic | 35.0% | |
| !!! | GATTTCCTTTTTTTACCTCG+AGG | + | chr7_1:1870742-1870761 | None:intergenic | 35.0% |
| !! | CAAATTGTTGGTTTGTGGTT+TGG | + | chr7_1:1870819-1870838 | None:intergenic | 35.0% |
| ! | CCACAACACATCATGAATTT+TGG | + | chr7_1:1871173-1871192 | None:intergenic | 35.0% |
| CCAAAATTCATGATGTGTTG+TGG | - | chr7_1:1871170-1871189 | Msa1004380:intron | 35.0% | |
| TTCATGATGTGTTGTGGAAA+TGG | - | chr7_1:1871176-1871195 | Msa1004380:intron | 35.0% | |
| ! | AGTAGATTTTGAATGAGAGG+TGG | + | chr7_1:1871233-1871252 | None:intergenic | 35.0% |
| ! | GCTTGGAAATTTTTACTCTC+AGG | + | chr7_1:1871272-1871291 | None:intergenic | 35.0% |
| ! | ATGTTTTCTTTTACCTCTCC+TGG | - | chr7_1:1871314-1871333 | Msa1004380:intron | 35.0% |
| GATAACATGAACAAAGGAAG+AGG | - | chr7_1:1871350-1871369 | Msa1004380:intron | 35.0% | |
| ATGGTAACATGCTTCCAATT+CGG | + | chr7_1:1871412-1871431 | None:intergenic | 35.0% | |
| ATTTCAGATCGGAACAATGA+TGG | - | chr7_1:1871758-1871777 | Msa1004380:intron | 35.0% | |
| CGTAGAGATATTATCCTTCA+CGG | - | chr7_1:1871851-1871870 | Msa1004380:intron | 35.0% | |
| TGAGTTTCATGCCAGTTATT+TGG | - | chr7_1:1871901-1871920 | Msa1004380:CDS | 35.0% | |
| GAGTTTCATGCCAGTTATTT+GGG | - | chr7_1:1871902-1871921 | Msa1004380:CDS | 35.0% | |
| ! | ATTTTCACATATGGAGAGGA+TGG | - | chr7_1:1871941-1871960 | Msa1004380:CDS | 35.0% |
| !! | CTATGACTTTGATTTGTTCC+AGG | - | chr7_1:1872077-1872096 | Msa1004380:CDS | 35.0% |
| CTGGTATTGTTGCAGAAAAT+CGG | + | chr7_1:1870693-1870712 | None:intergenic | 35.0% | |
| !!! | GATTTCCTTTTTTTACCTCG+AGG | + | chr7_1:1870742-1870761 | None:intergenic | 35.0% |
| !! | CAAATTGTTGGTTTGTGGTT+TGG | + | chr7_1:1870819-1870838 | None:intergenic | 35.0% |
| ! | CCACAACACATCATGAATTT+TGG | + | chr7_1:1871173-1871192 | None:intergenic | 35.0% |
| CCAAAATTCATGATGTGTTG+TGG | - | chr7_1:1871170-1871189 | Msa1004380:intron | 35.0% | |
| TTCATGATGTGTTGTGGAAA+TGG | - | chr7_1:1871176-1871195 | Msa1004380:intron | 35.0% | |
| ! | AGTAGATTTTGAATGAGAGG+TGG | + | chr7_1:1871233-1871252 | None:intergenic | 35.0% |
| ! | GCTTGGAAATTTTTACTCTC+AGG | + | chr7_1:1871272-1871291 | None:intergenic | 35.0% |
| ! | ATGTTTTCTTTTACCTCTCC+TGG | - | chr7_1:1871314-1871333 | Msa1004380:intron | 35.0% |
| GATAACATGAACAAAGGAAG+AGG | - | chr7_1:1871350-1871369 | Msa1004380:intron | 35.0% | |
| ATGGTAACATGCTTCCAATT+CGG | + | chr7_1:1871412-1871431 | None:intergenic | 35.0% | |
| ATTTCAGATCGGAACAATGA+TGG | - | chr7_1:1871758-1871777 | Msa1004380:intron | 35.0% | |
| CGTAGAGATATTATCCTTCA+CGG | - | chr7_1:1871851-1871870 | Msa1004380:intron | 35.0% | |
| TGAGTTTCATGCCAGTTATT+TGG | - | chr7_1:1871901-1871920 | Msa1004380:CDS | 35.0% | |
| GAGTTTCATGCCAGTTATTT+GGG | - | chr7_1:1871902-1871921 | Msa1004380:CDS | 35.0% | |
| ! | ATTTTCACATATGGAGAGGA+TGG | - | chr7_1:1871941-1871960 | Msa1004380:CDS | 35.0% |
| !! | CTATGACTTTGATTTGTTCC+AGG | - | chr7_1:1872077-1872096 | Msa1004380:CDS | 35.0% |
| ACAGAAGTTGCTGCAATTTC+TGG | + | chr7_1:1870712-1870731 | None:intergenic | 40.0% | |
| !!! | TTCCTTTTTTTACCTCGAGG+CGG | + | chr7_1:1870739-1870758 | None:intergenic | 40.0% |
| AAAAATGCGTCAACCTCTTC+AGG | + | chr7_1:1870931-1870950 | None:intergenic | 40.0% | |
| CATGTGGTATCAAGAGAGAA+AGG | - | chr7_1:1871124-1871143 | Msa1004380:CDS | 40.0% | |
| ! | AGATTTTGAATGAGAGGTGG+AGG | + | chr7_1:1871230-1871249 | None:intergenic | 40.0% |
| TACCTCTCCTGGAATGAAAA+TGG | - | chr7_1:1871325-1871344 | Msa1004380:intron | 40.0% | |
| ! | ATCCATTTTCATTCCAGGAG+AGG | + | chr7_1:1871330-1871349 | None:intergenic | 40.0% |
| !! | CACCAACTTTAAGGCTTCAA+GGG | - | chr7_1:1871375-1871394 | Msa1004380:intron | 40.0% |
| CTAACAGAATGAGTTCCTTC+AGG | - | chr7_1:1871492-1871511 | Msa1004380:intron | 40.0% | |
| GTCTATATCTCCGTCAATCA+GGG | + | chr7_1:1871822-1871841 | None:intergenic | 40.0% | |
| AGTCTATATCTCCGTCAATC+AGG | + | chr7_1:1871823-1871842 | None:intergenic | 40.0% | |
| AAGGATAATATCTCTACGCG+AGG | + | chr7_1:1871849-1871868 | None:intergenic | 40.0% | |
| ATTATCCTTCACGGACAATC+AGG | - | chr7_1:1871860-1871879 | Msa1004380:intron | 40.0% | |
| GCACAACCGTTTGACTATAA+AGG | - | chr7_1:1872015-1872034 | Msa1004380:CDS | 40.0% | |
| ACCGTTTGACTATAAAGGCA+TGG | - | chr7_1:1872020-1872039 | Msa1004380:CDS | 40.0% | |
| GCCATGCCTTTATAGTCAAA+CGG | + | chr7_1:1872024-1872043 | None:intergenic | 40.0% | |
| ACTAATGTCCAGACTATGTG+AGG | - | chr7_1:1872054-1872073 | Msa1004380:CDS | 40.0% | |
| ACAGAAGTTGCTGCAATTTC+TGG | + | chr7_1:1870712-1870731 | None:intergenic | 40.0% | |
| !!! | TTCCTTTTTTTACCTCGAGG+CGG | + | chr7_1:1870739-1870758 | None:intergenic | 40.0% |
| AAAAATGCGTCAACCTCTTC+AGG | + | chr7_1:1870931-1870950 | None:intergenic | 40.0% | |
| CATGTGGTATCAAGAGAGAA+AGG | - | chr7_1:1871124-1871143 | Msa1004380:CDS | 40.0% | |
| ! | AGATTTTGAATGAGAGGTGG+AGG | + | chr7_1:1871230-1871249 | None:intergenic | 40.0% |
| TACCTCTCCTGGAATGAAAA+TGG | - | chr7_1:1871325-1871344 | Msa1004380:intron | 40.0% | |
| ! | ATCCATTTTCATTCCAGGAG+AGG | + | chr7_1:1871330-1871349 | None:intergenic | 40.0% |
| !! | CACCAACTTTAAGGCTTCAA+GGG | - | chr7_1:1871375-1871394 | Msa1004380:intron | 40.0% |
| CTAACAGAATGAGTTCCTTC+AGG | - | chr7_1:1871492-1871511 | Msa1004380:intron | 40.0% | |
| GTCTATATCTCCGTCAATCA+GGG | + | chr7_1:1871822-1871841 | None:intergenic | 40.0% | |
| AGTCTATATCTCCGTCAATC+AGG | + | chr7_1:1871823-1871842 | None:intergenic | 40.0% | |
| AAGGATAATATCTCTACGCG+AGG | + | chr7_1:1871849-1871868 | None:intergenic | 40.0% | |
| ATTATCCTTCACGGACAATC+AGG | - | chr7_1:1871860-1871879 | Msa1004380:intron | 40.0% | |
| GCACAACCGTTTGACTATAA+AGG | - | chr7_1:1872015-1872034 | Msa1004380:CDS | 40.0% | |
| ACCGTTTGACTATAAAGGCA+TGG | - | chr7_1:1872020-1872039 | Msa1004380:CDS | 40.0% | |
| GCCATGCCTTTATAGTCAAA+CGG | + | chr7_1:1872024-1872043 | None:intergenic | 40.0% | |
| ACTAATGTCCAGACTATGTG+AGG | - | chr7_1:1872054-1872073 | Msa1004380:CDS | 40.0% | |
| TACCGCCTCGAGGTAAAAAA+AGG | - | chr7_1:1870734-1870753 | Msa1004380:CDS | 45.0% | |
| !! | TGGTTTGTGGTTTGGTGTTG+AGG | + | chr7_1:1870811-1870830 | None:intergenic | 45.0% |
| ! | AGAGGTTGACGCATTTTTGC+AGG | - | chr7_1:1870933-1870952 | Msa1004380:CDS | 45.0% |
| ! | GAGGTTGACGCATTTTTGCA+GGG | - | chr7_1:1870934-1870953 | Msa1004380:CDS | 45.0% |
| CACTGCTGACACTCACAAAT+AGG | + | chr7_1:1871095-1871114 | None:intergenic | 45.0% | |
| ATTTGTGAGTGTCAGCAGTG+TGG | - | chr7_1:1871095-1871114 | Msa1004380:CDS | 45.0% | |
| ! | GCTGTTCTAATAGTGGGAGT+TGG | + | chr7_1:1871208-1871227 | None:intergenic | 45.0% |
| GTGGAGGCTGTTCTAATAGT+GGG | + | chr7_1:1871214-1871233 | None:intergenic | 45.0% | |
| GAAGAGGTCCACCAACTTTA+AGG | - | chr7_1:1871366-1871385 | Msa1004380:intron | 45.0% | |
| CCTTGAAGCCTTAAAGTTGG+TGG | + | chr7_1:1871377-1871396 | None:intergenic | 45.0% | |
| !! | CCACCAACTTTAAGGCTTCA+AGG | - | chr7_1:1871374-1871393 | Msa1004380:intron | 45.0% |
| TGCCCTTGAAGCCTTAAAGT+TGG | + | chr7_1:1871380-1871399 | None:intergenic | 45.0% | |
| ! | GGAAGCATGTTACCATTACC+AGG | - | chr7_1:1871416-1871435 | Msa1004380:intron | 45.0% |
| TGTTACCATTACCAGGACAG+AGG | - | chr7_1:1871423-1871442 | Msa1004380:intron | 45.0% | |
| TGCAAACAATGTGCATGCAC+AGG | - | chr7_1:1871673-1871692 | Msa1004380:intron | 45.0% | |
| AGTCATAGCCTCACATAGTC+TGG | + | chr7_1:1872065-1872084 | None:intergenic | 45.0% | |
| TACCGCCTCGAGGTAAAAAA+AGG | - | chr7_1:1870734-1870753 | Msa1004380:CDS | 45.0% | |
| !! | TGGTTTGTGGTTTGGTGTTG+AGG | + | chr7_1:1870811-1870830 | None:intergenic | 45.0% |
| ! | AGAGGTTGACGCATTTTTGC+AGG | - | chr7_1:1870933-1870952 | Msa1004380:CDS | 45.0% |
| ! | GAGGTTGACGCATTTTTGCA+GGG | - | chr7_1:1870934-1870953 | Msa1004380:CDS | 45.0% |
| CACTGCTGACACTCACAAAT+AGG | + | chr7_1:1871095-1871114 | None:intergenic | 45.0% | |
| ATTTGTGAGTGTCAGCAGTG+TGG | - | chr7_1:1871095-1871114 | Msa1004380:CDS | 45.0% | |
| ! | GCTGTTCTAATAGTGGGAGT+TGG | + | chr7_1:1871208-1871227 | None:intergenic | 45.0% |
| GTGGAGGCTGTTCTAATAGT+GGG | + | chr7_1:1871214-1871233 | None:intergenic | 45.0% | |
| GAAGAGGTCCACCAACTTTA+AGG | - | chr7_1:1871366-1871385 | Msa1004380:intron | 45.0% | |
| CCTTGAAGCCTTAAAGTTGG+TGG | + | chr7_1:1871377-1871396 | None:intergenic | 45.0% | |
| !! | CCACCAACTTTAAGGCTTCA+AGG | - | chr7_1:1871374-1871393 | Msa1004380:intron | 45.0% |
| TGCCCTTGAAGCCTTAAAGT+TGG | + | chr7_1:1871380-1871399 | None:intergenic | 45.0% | |
| ! | GGAAGCATGTTACCATTACC+AGG | - | chr7_1:1871416-1871435 | Msa1004380:intron | 45.0% |
| TGTTACCATTACCAGGACAG+AGG | - | chr7_1:1871423-1871442 | Msa1004380:intron | 45.0% | |
| TGCAAACAATGTGCATGCAC+AGG | - | chr7_1:1871673-1871692 | Msa1004380:intron | 45.0% | |
| AGTCATAGCCTCACATAGTC+TGG | + | chr7_1:1872065-1872084 | None:intergenic | 45.0% | |
| ACTTCTGTAATACCGCCTCG+AGG | - | chr7_1:1870724-1870743 | Msa1004380:CDS | 50.0% | |
| TTGCGAAGACATGCCTGAAG+AGG | - | chr7_1:1870915-1870934 | Msa1004380:intron | 50.0% | |
| GGTGGAGGCTGTTCTAATAG+TGG | + | chr7_1:1871215-1871234 | None:intergenic | 50.0% | |
| ! | CATGCTTCCAATTCGGTGAC+AGG | + | chr7_1:1871405-1871424 | None:intergenic | 50.0% |
| TTTGGCCTCTGTCCTGGTAA+TGG | + | chr7_1:1871431-1871450 | None:intergenic | 50.0% | |
| !! | GCAAATTTTGGCCTCTGTCC+TGG | + | chr7_1:1871437-1871456 | None:intergenic | 50.0% |
| GCATGCACAGGCTTTCAGAA+TGG | - | chr7_1:1871685-1871704 | Msa1004380:intron | 50.0% | |
| GCAGCTACTTCTGACACAGT+TGG | + | chr7_1:1871800-1871819 | None:intergenic | 50.0% | |
| GAAGTAGCTGCCCTGATTGA+CGG | - | chr7_1:1871809-1871828 | Msa1004380:intron | 50.0% | |
| GTTCACCTGATTGTCCGTGA+AGG | + | chr7_1:1871868-1871887 | None:intergenic | 50.0% | |
| ACTTCTGTAATACCGCCTCG+AGG | - | chr7_1:1870724-1870743 | Msa1004380:CDS | 50.0% | |
| TTGCGAAGACATGCCTGAAG+AGG | - | chr7_1:1870915-1870934 | Msa1004380:intron | 50.0% | |
| GGTGGAGGCTGTTCTAATAG+TGG | + | chr7_1:1871215-1871234 | None:intergenic | 50.0% | |
| ! | CATGCTTCCAATTCGGTGAC+AGG | + | chr7_1:1871405-1871424 | None:intergenic | 50.0% |
| TTTGGCCTCTGTCCTGGTAA+TGG | + | chr7_1:1871431-1871450 | None:intergenic | 50.0% | |
| !! | GCAAATTTTGGCCTCTGTCC+TGG | + | chr7_1:1871437-1871456 | None:intergenic | 50.0% |
| GCATGCACAGGCTTTCAGAA+TGG | - | chr7_1:1871685-1871704 | Msa1004380:intron | 50.0% | |
| GCAGCTACTTCTGACACAGT+TGG | + | chr7_1:1871800-1871819 | None:intergenic | 50.0% | |
| GAAGTAGCTGCCCTGATTGA+CGG | - | chr7_1:1871809-1871828 | Msa1004380:intron | 50.0% | |
| GTTCACCTGATTGTCCGTGA+AGG | + | chr7_1:1871868-1871887 | None:intergenic | 50.0% | |
| AGCAGTGTGGAGCTCTCATG+TGG | - | chr7_1:1871108-1871127 | Msa1004380:CDS | 55.0% | |
| GGGCAAACCTGTCACCGAAT+TGG | - | chr7_1:1871395-1871414 | Msa1004380:intron | 55.0% | |
| GGAGAGGATGGATATCGTCC+AGG | - | chr7_1:1871953-1871972 | Msa1004380:CDS | 55.0% | |
| AGCAGTGTGGAGCTCTCATG+TGG | - | chr7_1:1871108-1871127 | Msa1004380:CDS | 55.0% | |
| GGGCAAACCTGTCACCGAAT+TGG | - | chr7_1:1871395-1871414 | Msa1004380:intron | 55.0% | |
| GGAGAGGATGGATATCGTCC+AGG | - | chr7_1:1871953-1871972 | Msa1004380:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 1870658 | 1872111 | 1870658 | ID=Msa1004380;Name=Msa1004380 |
| chr7_1 | mRNA | 1870658 | 1872111 | 1870658 | ID=Msa1004380-mRNA-1;Parent=Msa1004380;Name=Msa1004380-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|0|0|3|0|230 |
| chr7_1 | exon | 1871885 | 1872111 | 1871885 | ID=Msa1004380-mRNA-1:exon:744;Parent=Msa1004380-mRNA-1 |
| chr7_1 | exon | 1870918 | 1871150 | 1870918 | ID=Msa1004380-mRNA-1:exon:743;Parent=Msa1004380-mRNA-1 |
| chr7_1 | exon | 1870658 | 1870887 | 1870658 | ID=Msa1004380-mRNA-1:exon:742;Parent=Msa1004380-mRNA-1 |
| chr7_1 | CDS | 1871885 | 1872111 | 1871885 | ID=Msa1004380-mRNA-1:cds;Parent=Msa1004380-mRNA-1 |
| chr7_1 | CDS | 1870918 | 1871150 | 1870918 | ID=Msa1004380-mRNA-1:cds;Parent=Msa1004380-mRNA-1 |
| chr7_1 | CDS | 1870658 | 1870887 | 1870658 | ID=Msa1004380-mRNA-1:cds;Parent=Msa1004380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
