Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004390 | KEH17656.1 | 83.032 | 442 | 57 | 1 | 36 | 477 | 49 | 472 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004390 | A0A072TKC9 | 83.032 | 442 | 57 | 1 | 36 | 477 | 49 | 472 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044260 | Msa1004390 | 0.813227 | 2.847784e-51 | -8.615850e-47 |
| Msa0640510 | Msa1004390 | -0.838983 | 2.079156e-57 | -8.615850e-47 |
| Msa0672690 | Msa1004390 | 0.805772 | 1.136121e-49 | -8.615850e-47 |
| Msa0735660 | Msa1004390 | 0.823054 | 1.702540e-53 | -8.615850e-47 |
| Msa0753720 | Msa1004390 | 0.829223 | 5.805305e-55 | -8.615850e-47 |
| Msa0820850 | Msa1004390 | 0.801709 | 7.922624e-49 | -8.615850e-47 |
| Msa0198340 | Msa1004390 | 0.811824 | 5.771588e-51 | -8.615850e-47 |
| Msa0205510 | Msa1004390 | 0.806987 | 6.297126e-50 | -8.615850e-47 |
| Msa1004380 | Msa1004390 | 0.896929 | 2.299185e-76 | -8.615850e-47 |
| Msa1004390 | Msa1053720 | 0.810346 | 1.206474e-50 | -8.615850e-47 |
| Msa1004390 | Msa1100050 | 0.809301 | 2.025083e-50 | -8.615850e-47 |
| Msa1004390 | Msa1121480 | 0.812552 | 4.003078e-51 | -8.615850e-47 |
| Msa1004390 | Msa1121490 | 0.808093 | 3.669320e-50 | -8.615850e-47 |
| Msa1004390 | Msa1128490 | -0.800332 | 1.514364e-48 | -8.615850e-47 |
| Msa1004390 | Msa1146100 | 0.831215 | 1.894376e-55 | -8.615850e-47 |
| Msa1004390 | Msa1277660 | 0.806049 | 9.933066e-50 | -8.615850e-47 |
| Msa1004390 | Msa1284680 | 0.818916 | 1.527254e-52 | -8.615850e-47 |
| Msa1004390 | Msa1388510 | 0.822341 | 2.495558e-53 | -8.615850e-47 |
| Msa0317520 | Msa1004390 | 0.812739 | 3.643498e-51 | -8.615850e-47 |
| Msa0359030 | Msa1004390 | 0.826482 | 2.647445e-54 | -8.615850e-47 |
| Msa0861130 | Msa1004390 | 0.802457 | 5.558674e-49 | -8.615850e-47 |
| Msa0897330 | Msa1004390 | 0.803901 | 2.794084e-49 | -8.615850e-47 |
| Msa0931520 | Msa1004390 | 0.813507 | 2.471534e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004390 | MtrunA17_Chr1g0167871 | 61.010 | 495 | 160 | 5 | 4 | 496 | 252 | 715 | 0.0 | 604 |
| Msa1004390 | MtrunA17_Chr2g0304851 | 58.982 | 334 | 116 | 2 | 4 | 335 | 51 | 365 | 8.17e-149 | 430 |
| Msa1004390 | MtrunA17_Chr5g0393521 | 65.646 | 294 | 100 | 1 | 203 | 496 | 2 | 294 | 2.49e-134 | 390 |
| Msa1004390 | MtrunA17_Chr5g0417421 | 69.780 | 182 | 54 | 1 | 242 | 423 | 109 | 289 | 9.39e-89 | 273 |
| Msa1004390 | MtrunA17_Chr5g0417421 | 56.667 | 120 | 34 | 4 | 71 | 190 | 19 | 120 | 5.99e-35 | 132 |
| Msa1004390 | MtrunA17_Chr6g0462951 | 83.453 | 139 | 23 | 0 | 36 | 174 | 1 | 139 | 5.11e-81 | 248 |
| Msa1004390 | MtrunA17_Chr7g0231491 | 64.162 | 173 | 60 | 1 | 4 | 174 | 81 | 253 | 3.22e-76 | 240 |
| Msa1004390 | MtrunA17_Chr5g0393531 | 60.556 | 180 | 59 | 3 | 4 | 181 | 47 | 216 | 8.41e-68 | 216 |
| Msa1004390 | MtrunA17_Chr7g0223511 | 54.601 | 163 | 50 | 3 | 4 | 164 | 70 | 210 | 2.99e-53 | 179 |
| Msa1004390 | MtrunA17_Chr5g0420451 | 52.147 | 163 | 63 | 3 | 4 | 164 | 48 | 197 | 8.16e-50 | 170 |
| Msa1004390 | MtrunA17_Chr8g0347361 | 60.833 | 120 | 43 | 2 | 4 | 121 | 57 | 174 | 1.73e-43 | 152 |
| Msa1004390 | MtrunA17_Chr4g0026601 | 53.175 | 126 | 57 | 1 | 6 | 129 | 57 | 182 | 3.82e-40 | 143 |
| Msa1004390 | MtrunA17_Chr4g0044661 | 26.962 | 497 | 274 | 14 | 7 | 489 | 57 | 478 | 5.04e-40 | 150 |
| Msa1004390 | MtrunA17_Chr8g0372151 | 45.198 | 177 | 49 | 2 | 49 | 225 | 50 | 178 | 2.30e-39 | 142 |
| Msa1004390 | MtrunA17_Chr7g0234461 | 70.330 | 91 | 25 | 1 | 2 | 90 | 6 | 96 | 2.43e-37 | 132 |
| Msa1004390 | MtrunA17_Chr6g0481111 | 59.341 | 91 | 34 | 1 | 4 | 91 | 47 | 137 | 2.94e-29 | 112 |
| Msa1004390 | MtrunA17_Chr7g0231501 | 63.514 | 74 | 27 | 0 | 164 | 237 | 6 | 79 | 1.35e-27 | 105 |
| Msa1004390 | MtrunA17_Chr5g0421991 | 38.519 | 135 | 83 | 0 | 210 | 344 | 6 | 140 | 7.31e-26 | 107 |
| Msa1004390 | MtrunA17_Chr1g0148611 | 34.940 | 166 | 101 | 5 | 3 | 164 | 1 | 163 | 5.52e-23 | 95.5 |
| Msa1004390 | MtrunA17_Chr1g0172341 | 63.636 | 66 | 22 | 1 | 4 | 67 | 49 | 114 | 3.05e-21 | 89.0 |
| Msa1004390 | MtrunA17_Chr8g0363071 | 32.704 | 159 | 103 | 3 | 3 | 158 | 1 | 158 | 5.55e-20 | 87.0 |
| Msa1004390 | MtrunA17_Chr5g0393801 | 70.690 | 58 | 15 | 1 | 4 | 59 | 47 | 104 | 1.53e-19 | 84.0 |
| Msa1004390 | MtrunA17_Chr5g0411141 | 24.691 | 243 | 174 | 6 | 4 | 243 | 52 | 288 | 4.67e-16 | 79.3 |
| Msa1004390 | MtrunA17_Chr2g0278111 | 24.691 | 243 | 174 | 6 | 4 | 243 | 51 | 287 | 4.84e-16 | 79.0 |
| Msa1004390 | MtrunA17_Chr5g0423441 | 27.528 | 178 | 124 | 4 | 17 | 191 | 64 | 239 | 2.24e-15 | 76.3 |
| Msa1004390 | MtrunA17_Chr1g0206481 | 26.316 | 228 | 155 | 7 | 23 | 245 | 70 | 289 | 9.89e-15 | 74.7 |
| Msa1004390 | MtrunA17_Chr1g0171051 | 29.189 | 185 | 100 | 5 | 5 | 161 | 104 | 285 | 1.13e-14 | 75.5 |
| Msa1004390 | MtrunA17_Chr2g0280031 | 27.322 | 183 | 121 | 5 | 17 | 188 | 45 | 226 | 1.77e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 107 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGTACACAAACCTTTAA+TGG | 0.178323 | 7_1:-1875885 | Msa1004390:CDS |
| CTATACTTTAAGCAACTTTC+TGG | 0.189262 | 7_1:-1876854 | Msa1004390:intron |
| ATCAAACTGAGATCCATTAA+AGG | 0.290163 | 7_1:+1875872 | None:intergenic |
| CCTCCATACACATGTGATTC+TGG | 0.293596 | 7_1:-1875564 | Msa1004390:CDS |
| CGGCTCTGTGGTTAGCTATA+AGG | 0.305993 | 7_1:-1875136 | Msa1004390:CDS |
| TGAACAATTACCGGTGCATT+AGG | 0.316086 | 7_1:+1875075 | None:intergenic |
| TGCATTTAGTTTGCCTAAAC+AGG | 0.320767 | 7_1:-1875934 | Msa1004390:intron |
| TACCTGTTAACTGTACTCTT+TGG | 0.323139 | 7_1:-1876346 | Msa1004390:CDS |
| AACATAAGTTCAAGCTAATC+TGG | 0.331060 | 7_1:-1876798 | Msa1004390:CDS |
| TTTGATGAGCTTGACTCTCT+TGG | 0.332068 | 7_1:+1874558 | None:intergenic |
| GGTTTGCTGCAAGTGTAATA+AGG | 0.340796 | 7_1:-1875604 | Msa1004390:CDS |
| GACTCTAGCTGGTCCTGTTT+AGG | 0.348441 | 7_1:+1875921 | None:intergenic |
| CGTTGTTGTTTAGATGTCAT+TGG | 0.350270 | 7_1:-1876574 | Msa1004390:intron |
| TTTATGCAGCCTGGGCTATC+CGG | 0.359281 | 7_1:-1874760 | Msa1004390:intron |
| CAGGTTTGGCTGGTATTACT+TGG | 0.363690 | 7_1:-1875625 | Msa1004390:CDS |
| ACCTGTTAACTGTACTCTTT+GGG | 0.368181 | 7_1:-1876345 | Msa1004390:CDS |
| CTGGCTTAGCAGGAGTGATT+TGG | 0.371032 | 7_1:+1874647 | None:intergenic |
| AAAGTTAACTCAACCAGGTT+TGG | 0.385376 | 7_1:-1875639 | Msa1004390:CDS |
| ACTTCTGGCTAAAAGACTTA+AGG | 0.392190 | 7_1:-1876489 | Msa1004390:intron |
| AGTGCTCTTGGTGTCTTCAT+AGG | 0.394781 | 7_1:+1875410 | None:intergenic |
| GGTGAATGACTTCGTCTTCA+AGG | 0.397058 | 7_1:-1876827 | Msa1004390:CDS |
| TCCCAAAGAGTACAGTTAAC+AGG | 0.402016 | 7_1:+1876344 | None:intergenic |
| TTCAGGCTGGGATCACTAAT+AGG | 0.413636 | 7_1:-1875239 | Msa1004390:intron |
| GCTGAACTTGATAAACTTTG+CGG | 0.417974 | 7_1:+1876313 | None:intergenic |
| CAGAAAGTTGCTTAAAGTAT+AGG | 0.421723 | 7_1:+1876855 | None:intergenic |
| GGCAAAGCAGGAACAGATAC+TGG | 0.422126 | 7_1:+1874628 | None:intergenic |
| GGAACAGATACTGGCTTAGC+AGG | 0.425231 | 7_1:+1874637 | None:intergenic |
| CGAGATTATCCAGCTTGATC+AGG | 0.426725 | 7_1:-1875805 | Msa1004390:intron |
| GCTGACTTTGTGACTCTAGC+TGG | 0.440456 | 7_1:+1875910 | None:intergenic |
| CTGAAATAGCTGCTGGAAGA+TGG | 0.440640 | 7_1:-1876702 | Msa1004390:CDS |
| AGCTTTGAAGTTCAAACCCT+TGG | 0.444243 | 7_1:-1876725 | Msa1004390:CDS |
| GATGACTTCTGTTTGATGCC+TGG | 0.445293 | 7_1:+1874673 | None:intergenic |
| GAATTTCTGCTGCTCAGCTT+AGG | 0.446871 | 7_1:-1875350 | Msa1004390:CDS |
| CCGTGAGGTCTCTCAATTGT+TGG | 0.461588 | 7_1:-1875373 | Msa1004390:CDS |
| TGGAAATAACCTGATCAAGC+TGG | 0.469236 | 7_1:+1875796 | None:intergenic |
| CTGAGTGTTACTAACACATA+TGG | 0.471788 | 7_1:-1876122 | Msa1004390:CDS |
| CGTGAGGTCTCTCAATTGTT+GGG | 0.473546 | 7_1:-1875372 | Msa1004390:CDS |
| GATACTGAAGATGAAATCCT+TGG | 0.477564 | 7_1:-1875852 | Msa1004390:CDS |
| TTAACTCAACCAGGTTTGGC+TGG | 0.484831 | 7_1:-1875635 | Msa1004390:CDS |
| CCCTTGGCTGAAATAGCTGC+TGG | 0.486703 | 7_1:-1876709 | Msa1004390:CDS |
| TTGAACTTCAAAGCTACATC+AGG | 0.486715 | 7_1:+1876733 | None:intergenic |
| TGTCCAGAATCACATGTGTA+TGG | 0.486770 | 7_1:+1875561 | None:intergenic |
| CCACATGACAAAAGTGCTCT+TGG | 0.488062 | 7_1:+1875398 | None:intergenic |
| ATCATCAAACGCATCTGGTA+GGG | 0.493945 | 7_1:+1874606 | None:intergenic |
| GTAGTAGATTTCTCACTCAT+AGG | 0.494093 | 7_1:+1874697 | None:intergenic |
| TCTCACTCATAGGTGTAAGT+TGG | 0.496358 | 7_1:+1874707 | None:intergenic |
| GTGATATCATCAAACGCATC+TGG | 0.497451 | 7_1:+1874601 | None:intergenic |
| TAGCATTGGTCAGAAATCAA+TGG | 0.500696 | 7_1:-1875193 | Msa1004390:CDS |
| TATTGAGATTTGTAACCAGT+TGG | 0.503410 | 7_1:+1876904 | None:intergenic |
| AACATCATTCTCAGCGGTGC+CGG | 0.504228 | 7_1:+1874741 | None:intergenic |
| ACACTGAGACAGAAATTGTC+AGG | 0.505666 | 7_1:-1875536 | Msa1004390:intron |
| GTATGGAGGTTTATCACCCT+TGG | 0.508021 | 7_1:+1875578 | None:intergenic |
| TTACAAATCTCAATATGAAA+AGG | 0.510883 | 7_1:-1876896 | Msa1004390:CDS |
| TCCAGCAGCTATTTCAGCCA+AGG | 0.512978 | 7_1:+1876708 | None:intergenic |
| GCATCTGGTAGGGGCAAAGC+AGG | 0.520938 | 7_1:+1874616 | None:intergenic |
| CCAGCAGCTATTTCAGCCAA+GGG | 0.522366 | 7_1:+1876709 | None:intergenic |
| TGGCAACCAAGGTGGAAGAC+CGG | 0.536803 | 7_1:-1875156 | Msa1004390:CDS |
| CTGATCAAGCTGGATAATCT+CGG | 0.537869 | 7_1:+1875806 | None:intergenic |
| CCCACATTGATTGATAGCAT+TGG | 0.539921 | 7_1:-1875207 | Msa1004390:CDS |
| TGATGATAGTACCATGTCCT+TGG | 0.541192 | 7_1:-1874890 | Msa1004390:intron |
| TCTAAATGAGTACATGGTAA+TGG | 0.541852 | 7_1:-1879031 | None:intergenic |
| TCAGCGGTGCCGGATAGCCC+AGG | 0.551476 | 7_1:+1874751 | None:intergenic |
| GTTAAAGAGAAGTTATCAGA+AGG | 0.551820 | 7_1:+1874913 | None:intergenic |
| CAAGTAATACCAGCCAAACC+TGG | 0.552881 | 7_1:+1875626 | None:intergenic |
| TAGCTTGAACTTATGTTCAG+AGG | 0.557829 | 7_1:+1876804 | None:intergenic |
| CAAGTTCAGCAATGAAAGGA+AGG | 0.558140 | 7_1:-1876300 | Msa1004390:CDS |
| TCATCAAACGCATCTGGTAG+GGG | 0.558821 | 7_1:+1874607 | None:intergenic |
| ATCTAAGTATCCTAATGCAC+CGG | 0.561635 | 7_1:-1875085 | Msa1004390:intron |
| AAGTTCAAGCTAATCTGGAC+TGG | 0.564646 | 7_1:-1876793 | Msa1004390:CDS |
| AGCAATGAAAGGAAGGAAGC+TGG | 0.568128 | 7_1:-1876293 | Msa1004390:CDS |
| GCTTAGGCTGAACATGATTG+AGG | 0.568824 | 7_1:-1875334 | Msa1004390:intron |
| TATCATCAAACGCATCTGGT+AGG | 0.570013 | 7_1:+1874605 | None:intergenic |
| CAAGTGTAATAAGGTAGCCA+AGG | 0.570373 | 7_1:-1875595 | Msa1004390:CDS |
| ACAACCTCAGTGGATTCAGC+AGG | 0.570374 | 7_1:+1874943 | None:intergenic |
| ATTGGATATGTACATGAGGT+TGG | 0.573698 | 7_1:-1876556 | Msa1004390:CDS |
| TTATCAAGTTCAGCAATGAA+AGG | 0.575347 | 7_1:-1876304 | Msa1004390:CDS |
| TCAATATGAAAAGGTCATTG+AGG | 0.578592 | 7_1:-1876887 | Msa1004390:CDS |
| TTCAAGCTAATCTGGACTGG+TGG | 0.579245 | 7_1:-1876790 | Msa1004390:CDS |
| AGCTGGATAATCTCGGACAA+AGG | 0.579584 | 7_1:+1875813 | None:intergenic |
| GCATTATAAGATTATTACCA+AGG | 0.583694 | 7_1:+1875835 | None:intergenic |
| ACAGAGCCGGTCTTCCACCT+TGG | 0.587561 | 7_1:+1875150 | None:intergenic |
| TTAAGGTGAAATGGCAACCA+AGG | 0.588494 | 7_1:-1875167 | Msa1004390:CDS |
| TATGCAAAAGTCAAGGAGGA+AGG | 0.599228 | 7_1:-1876248 | Msa1004390:intron |
| TGTTAACTGTACTCTTTGGG+AGG | 0.604041 | 7_1:-1876342 | Msa1004390:CDS |
| GCTGAAATATGCAAAAGTCA+AGG | 0.605131 | 7_1:-1876255 | Msa1004390:CDS |
| TATTTCAGCATCACAACGAT+AGG | 0.609747 | 7_1:+1876269 | None:intergenic |
| GGTTATTGTCAAATGACTGA+GGG | 0.611020 | 7_1:-1876535 | Msa1004390:CDS |
| ACCAATGCTATCAATCAATG+TGG | 0.612235 | 7_1:+1875206 | None:intergenic |
| CTTATAGCTAACCACAGAGC+CGG | 0.626960 | 7_1:+1875137 | None:intergenic |
| AGGTGAAATGGCAACCAAGG+TGG | 0.634130 | 7_1:-1875164 | Msa1004390:CDS |
| TGGTTATTGTCAAATGACTG+AGG | 0.636518 | 7_1:-1876536 | Msa1004390:CDS |
| AGGTTTGTCAACAACCTCAG+TGG | 0.637339 | 7_1:+1874933 | None:intergenic |
| ATGTGTTAGTAACACTCAGT+GGG | 0.637937 | 7_1:+1876126 | None:intergenic |
| CCAATGCTATCAATCAATGT+GGG | 0.640579 | 7_1:+1875207 | None:intergenic |
| AGTGAGAAATCTACTACACC+AGG | 0.644739 | 7_1:-1874691 | Msa1004390:CDS |
| CCAGAATCACATGTGTATGG+AGG | 0.648886 | 7_1:+1875564 | None:intergenic |
| AATCTGGACTGGTGGAACAA+CGG | 0.653566 | 7_1:-1876782 | Msa1004390:CDS |
| TATTAAACGTACCAAGGACA+TGG | 0.659286 | 7_1:+1874879 | None:intergenic |
| AAGTGTAATAAGGTAGCCAA+GGG | 0.663723 | 7_1:-1875594 | Msa1004390:CDS |
| GAAATATGCAAAAGTCAAGG+AGG | 0.676181 | 7_1:-1876252 | Msa1004390:CDS |
| CCAACAATTGAGAGACCTCA+CGG | 0.676482 | 7_1:+1875373 | None:intergenic |
| TCTGTGGTTAGCTATAAGGA+AGG | 0.687276 | 7_1:-1875132 | Msa1004390:CDS |
| TTTGCCTGCTGAATCCACTG+AGG | 0.688111 | 7_1:-1874947 | Msa1004390:CDS |
| TATGTGTTAGTAACACTCAG+TGG | 0.690672 | 7_1:+1876125 | None:intergenic |
| AAGGTGGAAGACCGGCTCTG+TGG | 0.691285 | 7_1:-1875148 | Msa1004390:CDS |
| CGTTTCAACATCATTCTCAG+CGG | 0.708624 | 7_1:+1874735 | None:intergenic |
| TGTCATTGGATATGTACATG+AGG | 0.717102 | 7_1:-1876560 | Msa1004390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTATTTTATATTA+TGG | - | chr7_1:1878060-1878079 | Msa1004390:intron | 0.0% |
| !!! | TAATTATACTAATTTGAAAT+AGG | + | chr7_1:1878753-1878772 | None:intergenic | 10.0% |
| !! | ATAATCAAATAATAACACTT+TGG | - | chr7_1:1874868-1874887 | Msa1004390:intron | 15.0% |
| !! | TGTTGTTAATATGTATATAA+TGG | + | chr7_1:1875636-1875655 | None:intergenic | 15.0% |
| !!! | TGTCTTTTTTTTATAAAGTA+AGG | + | chr7_1:1876213-1876232 | None:intergenic | 15.0% |
| !! | NNNNNNNNNNAATTACCTCA+AGG | - | chr7_1:1876563-1876582 | Msa1004390:CDS | 15.0% |
| !!! | TTTATATTTTGGTATAATGT+AGG | + | chr7_1:1876946-1876965 | None:intergenic | 15.0% |
| !! | AAATCAAAAAATTCAAAGAA+AGG | - | chr7_1:1877497-1877516 | Msa1004390:intron | 15.0% |
| !! | TAAAGTTAAAAATGAGTAAA+AGG | + | chr7_1:1877600-1877619 | None:intergenic | 15.0% |
| !! | AATTAAATACATGTTCATTA+AGG | - | chr7_1:1878106-1878125 | Msa1004390:intron | 15.0% |
| !! | CTATATAAAAAACTGCAATT+CGG | + | chr7_1:1874832-1874851 | None:intergenic | 20.0% |
| !! | TAGAATCTCATTTGAATTAT+TGG | + | chr7_1:1874923-1874942 | None:intergenic | 20.0% |
| !! | ATACATATTAACAACACATT+AGG | - | chr7_1:1875640-1875659 | Msa1004390:CDS | 20.0% |
| !!! | CTTAACAATATTCTCTTTTA+AGG | - | chr7_1:1875943-1875962 | Msa1004390:intron | 20.0% |
| !! | GAAAAAAATTAAAGTTGCAT+TGG | - | chr7_1:1876302-1876321 | Msa1004390:CDS | 20.0% |
| !!! | CATTTTGAAACATTTTGAAA+CGG | - | chr7_1:1876380-1876399 | Msa1004390:intron | 20.0% |
| !! | ATTGCTTAAATTAATGAATG+TGG | - | chr7_1:1876422-1876441 | Msa1004390:intron | 20.0% |
| !! | TTACAAATCTCAATATGAAA+AGG | - | chr7_1:1876665-1876684 | Msa1004390:intron | 20.0% |
| !!! | CAATGTGAATGTTTATATTT+TGG | + | chr7_1:1876957-1876976 | None:intergenic | 20.0% |
| !! | TAATATATCCAATTTGACAT+TGG | - | chr7_1:1878700-1878719 | Msa1004390:intron | 20.0% |
| ! | CTCATATTACCATAACTAAA+TGG | + | chr7_1:1874775-1874794 | None:intergenic | 25.0% |
| ! | TCCTTAATTTCTTCAAAAGA+TGG | - | chr7_1:1875035-1875054 | Msa1004390:intron | 25.0% |
| !!! | TCCATCTTTTGAAGAAATTA+AGG | + | chr7_1:1875039-1875058 | None:intergenic | 25.0% |
| ! | ATCATATGATTGAATTTGCA+GGG | + | chr7_1:1875092-1875111 | None:intergenic | 25.0% |
| !!! | TCTTTACTGTTTTTTAGAAG+CGG | + | chr7_1:1875264-1875283 | None:intergenic | 25.0% |
| !!! | GTGTCCTATTTTTTGAAAAT+GGG | + | chr7_1:1876058-1876077 | None:intergenic | 25.0% |
| !!! | AGTGTCCTATTTTTTGAAAA+TGG | + | chr7_1:1876059-1876078 | None:intergenic | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | - | chr7_1:1876267-1876286 | Msa1004390:CDS | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | - | chr7_1:1876268-1876287 | Msa1004390:CDS | 25.0% |
| ! | AATTTAAGCAATTGCTATAC+TGG | + | chr7_1:1876414-1876433 | None:intergenic | 25.0% |
| ! | CATTGTGAATGAAATACTTA+CGG | + | chr7_1:1876902-1876921 | None:intergenic | 25.0% |
| !! | AAAAACTTCAAGTTAACTTC+TGG | - | chr7_1:1877057-1877076 | Msa1004390:intron | 25.0% |
| !!! | AAGTTTTGTTGTTTGAGATA+AGG | - | chr7_1:1877521-1877540 | Msa1004390:intron | 25.0% |
| ! | GCATTATAAGATTATTACCA+AGG | + | chr7_1:1877729-1877748 | None:intergenic | 25.0% |
| !! | AGGTTATTTCCAATTCAATA+TGG | - | chr7_1:1877776-1877795 | Msa1004390:intron | 25.0% |
| ! | TATAGAAAGCCATATTGAAT+TGG | + | chr7_1:1877788-1877807 | None:intergenic | 25.0% |
| ! | AACCTCATATTATCTTTACT+TGG | - | chr7_1:1877826-1877845 | Msa1004390:intron | 25.0% |
| ! | ATCCAAGTAAAGATAATATG+AGG | + | chr7_1:1877831-1877850 | None:intergenic | 25.0% |
| ! | ACGTAATCTACAAATTACAA+AGG | + | chr7_1:1877876-1877895 | None:intergenic | 25.0% |
| ! | TCATGTCTGTATAACAATAT+TGG | + | chr7_1:1878278-1878297 | None:intergenic | 25.0% |
| !! | TCAGAAATCAATGGTTTTTA+AGG | - | chr7_1:1878377-1878396 | Msa1004390:intron | 25.0% |
| ! | AGTGATAATTGAACAATTAC+CGG | + | chr7_1:1878498-1878517 | None:intergenic | 25.0% |
| ! | GTATGACTAACATGTTATAT+TGG | - | chr7_1:1878550-1878569 | Msa1004390:intron | 25.0% |
| TCAACGACTATTATCCTTAA+CGG | + | chr7_1:1875004-1875023 | None:intergenic | 30.0% | |
| GATCATATGATTGAATTTGC+AGG | + | chr7_1:1875093-1875112 | None:intergenic | 30.0% | |
| ! | CATTTCGTTAAAGTATCACT+TGG | + | chr7_1:1875135-1875154 | None:intergenic | 30.0% |
| CGAAATGTAACTATATGTGT+TGG | - | chr7_1:1875148-1875167 | Msa1004390:CDS | 30.0% | |
| AATGTAACTATATGTGTTGG+TGG | - | chr7_1:1875151-1875170 | Msa1004390:CDS | 30.0% | |
| AAGACACAAATCGTGTAAAA+CGG | - | chr7_1:1875280-1875299 | Msa1004390:intron | 30.0% | |
| TGATATACAACTATCTCTGA+TGG | + | chr7_1:1875311-1875330 | None:intergenic | 30.0% | |
| TGGATTTGATATTGTGATTG+TGG | + | chr7_1:1875507-1875526 | None:intergenic | 30.0% | |
| ! | TCGCTAATCTAAGGATTTTT+GGG | - | chr7_1:1875785-1875804 | Msa1004390:intron | 30.0% |
| AAGACACATTTCTTCGAATT+TGG | + | chr7_1:1875859-1875878 | None:intergenic | 30.0% | |
| TCGAAGAAATGTGTCTTTAA+TGG | - | chr7_1:1875862-1875881 | Msa1004390:CDS | 30.0% | |
| ! | GAATATTGTTAAGCCTTTTG+AGG | + | chr7_1:1875936-1875955 | None:intergenic | 30.0% |
| ! | CGATCCCATTTTCAAAAAAT+AGG | - | chr7_1:1876051-1876070 | Msa1004390:intron | 30.0% |
| ATTGTGTGAGAGATAAAAGT+TGG | - | chr7_1:1876253-1876272 | Msa1004390:CDS | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | - | chr7_1:1876277-1876296 | Msa1004390:CDS | 30.0% | |
| !!! | TTTGAAACATTTTGAAACGG+AGG | - | chr7_1:1876383-1876402 | Msa1004390:intron | 30.0% |
| !!! | TTGAAACATTTTGAAACGGA+GGG | - | chr7_1:1876384-1876403 | Msa1004390:intron | 30.0% |
| TAAATGCTAAGAAAACCTTG+AGG | + | chr7_1:1876581-1876600 | None:intergenic | 30.0% | |
| !!! | AACCTTTCCATGTTTTTTTC+AGG | - | chr7_1:1876611-1876630 | Msa1004390:intron | 30.0% |
| !!! | ACCTTTCCATGTTTTTTTCA+GGG | - | chr7_1:1876612-1876631 | Msa1004390:intron | 30.0% |
| !!! | ATTCAAGTTTTGATTCCAAC+TGG | - | chr7_1:1876642-1876661 | Msa1004390:intron | 30.0% |
| TATTGAGATTTGTAACCAGT+TGG | + | chr7_1:1876660-1876679 | None:intergenic | 30.0% | |
| TCAATATGAAAAGGTCATTG+AGG | - | chr7_1:1876674-1876693 | Msa1004390:intron | 30.0% | |
| CAGAAAGTTGCTTAAAGTAT+AGG | + | chr7_1:1876709-1876728 | None:intergenic | 30.0% | |
| CTATACTTTAAGCAACTTTC+TGG | - | chr7_1:1876707-1876726 | Msa1004390:CDS | 30.0% | |
| AACATAAGTTCAAGCTAATC+TGG | - | chr7_1:1876763-1876782 | Msa1004390:CDS | 30.0% | |
| TACGAAAAACAGTGTTTCAA+TGG | - | chr7_1:1877095-1877114 | Msa1004390:intron | 30.0% | |
| TTATCAAGTTCAGCAATGAA+AGG | - | chr7_1:1877257-1877276 | Msa1004390:intron | 30.0% | |
| ! | ATGTCACTTCAAATGTTGTT+AGG | - | chr7_1:1877406-1877425 | Msa1004390:intron | 30.0% |
| ! | TGTCACTTCAAATGTTGTTA+GGG | - | chr7_1:1877407-1877426 | Msa1004390:intron | 30.0% |
| !! | TTGTTGTTTGAGATAAGGTT+AGG | - | chr7_1:1877526-1877545 | Msa1004390:intron | 30.0% |
| ATGTGTACACAAACCTTTAA+TGG | - | chr7_1:1877676-1877695 | Msa1004390:intron | 30.0% | |
| ATCAAACTGAGATCCATTAA+AGG | + | chr7_1:1877692-1877711 | None:intergenic | 30.0% | |
| TTGAAAAAGTTAACTCAACC+AGG | - | chr7_1:1877917-1877936 | Msa1004390:intron | 30.0% | |
| ! | TGTATAACAATATTGGTGAC+AGG | + | chr7_1:1878271-1878290 | None:intergenic | 30.0% |
| CTCATATGATACAACATTTC+AGG | - | chr7_1:1878305-1878324 | Msa1004390:intron | 30.0% | |
| !!! | CAATGGTTTTTAAGGTGAAA+TGG | - | chr7_1:1878385-1878404 | Msa1004390:intron | 30.0% |
| GTTAAAGAGAAGTTATCAGA+AGG | + | chr7_1:1878651-1878670 | None:intergenic | 30.0% | |
| TGGATATATTAAACGTACCA+AGG | + | chr7_1:1878691-1878710 | None:intergenic | 30.0% | |
| TAATCAAGCCAATGTCAAAT+TGG | + | chr7_1:1878711-1878730 | None:intergenic | 30.0% | |
| AATTCAATATCTCACCACCA+TGG | - | chr7_1:1874622-1874641 | Msa1004390:CDS | 35.0% | |
| GGCTCATTTCCATTTAGTTA+TGG | - | chr7_1:1874763-1874782 | Msa1004390:intron | 35.0% | |
| ! | ATTTTGTTCACTCTCCGTTA+AGG | - | chr7_1:1874987-1875006 | Msa1004390:intron | 35.0% |
| TGCAACGTAGATAAGAATCA+AGG | - | chr7_1:1875205-1875224 | Msa1004390:CDS | 35.0% | |
| GCAACGTAGATAAGAATCAA+GGG | - | chr7_1:1875206-1875225 | Msa1004390:CDS | 35.0% | |
| TCACATATCATCCTATGCTT+TGG | + | chr7_1:1875392-1875411 | None:intergenic | 35.0% | |
| ! | GTTGAGGACAAAGCATTTAA+GGG | + | chr7_1:1875441-1875460 | None:intergenic | 35.0% |
| ! | TGTTGAGGACAAAGCATTTA+AGG | + | chr7_1:1875442-1875461 | None:intergenic | 35.0% |
| ! | ATCTAAAGTGAGTACTCTAG+AGG | - | chr7_1:1875688-1875707 | Msa1004390:intron | 35.0% |
| ATAACCTCTACATTGTGCAT+AGG | - | chr7_1:1875738-1875757 | Msa1004390:intron | 35.0% | |
| CTTAGATTAGCGAGATCAAT+GGG | + | chr7_1:1875778-1875797 | None:intergenic | 35.0% | |
| ! | CTCGCTAATCTAAGGATTTT+TGG | - | chr7_1:1875784-1875803 | Msa1004390:intron | 35.0% |
| CTGGATATATGCACATAACT+TGG | + | chr7_1:1875814-1875833 | None:intergenic | 35.0% | |
| TTATGTGCATATATCCAGTG+AGG | - | chr7_1:1875816-1875835 | Msa1004390:CDS | 35.0% | |
| CTTCGAATTTGGATCATGTT+TGG | + | chr7_1:1875848-1875867 | None:intergenic | 35.0% | |
| !!! | GACACTCATTTTGAAACAGA+GGG | + | chr7_1:1876129-1876148 | None:intergenic | 35.0% |
| TTCCTTAATCTGTGTGCAAT+TGG | + | chr7_1:1876159-1876178 | None:intergenic | 35.0% | |
| ATTGCACACAGATTAAGGAA+TGG | - | chr7_1:1876159-1876178 | Msa1004390:intron | 35.0% | |
| TCATTGCCCTGAAAAAAACA+TGG | + | chr7_1:1876621-1876640 | None:intergenic | 35.0% | |
| TAGCTTGAACTTATGTTCAG+AGG | + | chr7_1:1876760-1876779 | None:intergenic | 35.0% | |
| TTGAACTTCAAAGCTACATC+AGG | + | chr7_1:1876831-1876850 | None:intergenic | 35.0% | |
| !! | CGTTGTTGTTTAGATGTCAT+TGG | - | chr7_1:1876987-1877006 | Msa1004390:intron | 35.0% |
| TGTCATTGGATATGTACATG+AGG | - | chr7_1:1877001-1877020 | Msa1004390:intron | 35.0% | |
| ATTGGATATGTACATGAGGT+TGG | - | chr7_1:1877005-1877024 | Msa1004390:intron | 35.0% | |
| TGGTTATTGTCAAATGACTG+AGG | - | chr7_1:1877025-1877044 | Msa1004390:intron | 35.0% | |
| GGTTATTGTCAAATGACTGA+GGG | - | chr7_1:1877026-1877045 | Msa1004390:intron | 35.0% | |
| ! | ACTTCTGGCTAAAAGACTTA+AGG | - | chr7_1:1877072-1877091 | Msa1004390:intron | 35.0% |
| TACCTGTTAACTGTACTCTT+TGG | - | chr7_1:1877215-1877234 | Msa1004390:intron | 35.0% | |
| ACCTGTTAACTGTACTCTTT+GGG | - | chr7_1:1877216-1877235 | Msa1004390:intron | 35.0% | |
| GCTGAACTTGATAAACTTTG+CGG | + | chr7_1:1877251-1877270 | None:intergenic | 35.0% | |
| TATTTCAGCATCACAACGAT+AGG | + | chr7_1:1877295-1877314 | None:intergenic | 35.0% | |
| GCTGAAATATGCAAAAGTCA+AGG | - | chr7_1:1877306-1877325 | Msa1004390:intron | 35.0% | |
| GAAATATGCAAAAGTCAAGG+AGG | - | chr7_1:1877309-1877328 | Msa1004390:intron | 35.0% | |
| ATGTGTTAGTAACACTCAGT+GGG | + | chr7_1:1877438-1877457 | None:intergenic | 35.0% | |
| TATGTGTTAGTAACACTCAG+TGG | + | chr7_1:1877439-1877458 | None:intergenic | 35.0% | |
| ! | CTGAGTGTTACTAACACATA+TGG | - | chr7_1:1877439-1877458 | Msa1004390:intron | 35.0% |
| AGCCATTACTGTAATAGCTT+TGG | - | chr7_1:1877573-1877592 | Msa1004390:intron | 35.0% | |
| GTCCAAAGCTATTACAGTAA+TGG | + | chr7_1:1877578-1877597 | None:intergenic | 35.0% | |
| !! | TGCATTTAGTTTGCCTAAAC+AGG | - | chr7_1:1877627-1877646 | Msa1004390:intron | 35.0% |
| GATACTGAAGATGAAATCCT+TGG | - | chr7_1:1877709-1877728 | Msa1004390:intron | 35.0% | |
| AAAGTTAACTCAACCAGGTT+TGG | - | chr7_1:1877922-1877941 | Msa1004390:intron | 35.0% | |
| AAGTGTAATAAGGTAGCCAA+GGG | - | chr7_1:1877967-1877986 | Msa1004390:intron | 35.0% | |
| TATGATACAACATTTCAGGC+TGG | - | chr7_1:1878309-1878328 | Msa1004390:intron | 35.0% | |
| ATGATACAACATTTCAGGCT+GGG | - | chr7_1:1878310-1878329 | Msa1004390:intron | 35.0% | |
| CCAATGCTATCAATCAATGT+GGG | + | chr7_1:1878357-1878376 | None:intergenic | 35.0% | |
| ACCAATGCTATCAATCAATG+TGG | + | chr7_1:1878358-1878377 | None:intergenic | 35.0% | |
| !! | TAGCATTGGTCAGAAATCAA+TGG | - | chr7_1:1878368-1878387 | Msa1004390:intron | 35.0% |
| ATCTAAGTATCCTAATGCAC+CGG | - | chr7_1:1878476-1878495 | Msa1004390:intron | 35.0% | |
| TATTAAACGTACCAAGGACA+TGG | + | chr7_1:1878685-1878704 | None:intergenic | 35.0% | |
| AGGCTGCATAAAATAGACAA+AGG | + | chr7_1:1878793-1878812 | None:intergenic | 35.0% | |
| ! | TTTGTCTATTTTATGCAGCC+TGG | - | chr7_1:1878792-1878811 | Msa1004390:intron | 35.0% |
| ! | TTGTCTATTTTATGCAGCCT+GGG | - | chr7_1:1878793-1878812 | Msa1004390:intron | 35.0% |
| GTAGTAGATTTCTCACTCAT+AGG | + | chr7_1:1878867-1878886 | None:intergenic | 35.0% | |
| ! | TGGATGATGAATGTTTTGCA+GGG | + | chr7_1:1878986-1879005 | None:intergenic | 35.0% |
| ! | TTGGATGATGAATGTTTTGC+AGG | + | chr7_1:1878987-1879006 | None:intergenic | 35.0% |
| GACATGAATCAGTCACACAA+AGG | + | chr7_1:1874567-1874586 | None:intergenic | 40.0% | |
| GGTGGTGAGATATTGAATTG+AGG | + | chr7_1:1874621-1874640 | None:intergenic | 40.0% | |
| TTGAGTTTAATCGCCTCGTA+TGG | - | chr7_1:1874742-1874761 | Msa1004390:CDS | 40.0% | |
| AAATGGAAATGAGCCATACG+AGG | + | chr7_1:1874758-1874777 | None:intergenic | 40.0% | |
| TTCGGTCAACCAACTTGTAA+GGG | + | chr7_1:1874814-1874833 | None:intergenic | 40.0% | |
| ATTCGGTCAACCAACTTGTA+AGG | + | chr7_1:1874815-1874834 | None:intergenic | 40.0% | |
| TTACTACAATGTCTCTGTCG+AGG | - | chr7_1:1874949-1874968 | Msa1004390:CDS | 40.0% | |
| TACTACAATGTCTCTGTCGA+GGG | - | chr7_1:1874950-1874969 | Msa1004390:CDS | 40.0% | |
| !! | GCACTGACACTTTGGAATAA+AGG | + | chr7_1:1875188-1875207 | None:intergenic | 40.0% |
| TCAAGGGTTCAAGACAAAAG+CGG | - | chr7_1:1875222-1875241 | Msa1004390:CDS | 40.0% | |
| TTAGATGTCTCCGAAAGTCT+GGG | + | chr7_1:1875610-1875629 | None:intergenic | 40.0% | |
| TTTAGATGTCTCCGAAAGTC+TGG | + | chr7_1:1875611-1875630 | None:intergenic | 40.0% | |
| GCGCTATTGATCGATCAATT+TGG | - | chr7_1:1875662-1875681 | Msa1004390:CDS | 40.0% | |
| GCACAATGTAGAGGTTATAG+AGG | + | chr7_1:1875736-1875755 | None:intergenic | 40.0% | |
| TACATTGTGCATAGGAGGTT+TGG | - | chr7_1:1875746-1875765 | Msa1004390:intron | 40.0% | |
| CCTTAGATTAGCGAGATCAA+TGG | + | chr7_1:1875779-1875798 | None:intergenic | 40.0% | |
| CCATTGATCTCGCTAATCTA+AGG | - | chr7_1:1875776-1875795 | Msa1004390:intron | 40.0% | |
| TGCATATATCCAGTGAGGAT+AGG | - | chr7_1:1875821-1875840 | Msa1004390:CDS | 40.0% | |
| ! | GGACAGTTGAGTGAACTTTT+TGG | + | chr7_1:1875915-1875934 | None:intergenic | 40.0% |
| TTCACTCAACTGTCCTCAAA+AGG | - | chr7_1:1875920-1875939 | Msa1004390:CDS | 40.0% | |
| !!! | CGACACTCATTTTGAAACAG+AGG | + | chr7_1:1876130-1876149 | None:intergenic | 40.0% |
| AGCCAATTGCACACAGATTA+AGG | - | chr7_1:1876154-1876173 | Msa1004390:intron | 40.0% | |
| GCCCTGAAAAAAACATGGAA+AGG | + | chr7_1:1876616-1876635 | None:intergenic | 40.0% | |
| ! | TTTAAGCAACTTTCTGGTCC+AGG | - | chr7_1:1876713-1876732 | Msa1004390:CDS | 40.0% |
| AAGTTCAAGCTAATCTGGAC+TGG | - | chr7_1:1876768-1876787 | Msa1004390:CDS | 40.0% | |
| !! | AGCTTTGAAGTTCAAACCCT+TGG | - | chr7_1:1876836-1876855 | Msa1004390:intron | 40.0% |
| ! | TCCCAAAGAGTACAGTTAAC+AGG | + | chr7_1:1877220-1877239 | None:intergenic | 40.0% |
| TGTTAACTGTACTCTTTGGG+AGG | - | chr7_1:1877219-1877238 | Msa1004390:intron | 40.0% | |
| CAAGTTCAGCAATGAAAGGA+AGG | - | chr7_1:1877261-1877280 | Msa1004390:intron | 40.0% | |
| TATGCAAAAGTCAAGGAGGA+AGG | - | chr7_1:1877313-1877332 | Msa1004390:intron | 40.0% | |
| CTGATCAAGCTGGATAATCT+CGG | + | chr7_1:1877758-1877777 | None:intergenic | 40.0% | |
| TGGAAATAACCTGATCAAGC+TGG | + | chr7_1:1877768-1877787 | None:intergenic | 40.0% | |
| !! | GGTTTGCTGCAAGTGTAATA+AGG | - | chr7_1:1877957-1877976 | Msa1004390:intron | 40.0% |
| CAAGTGTAATAAGGTAGCCA+AGG | - | chr7_1:1877966-1877985 | Msa1004390:intron | 40.0% | |
| TGTCCAGAATCACATGTGTA+TGG | + | chr7_1:1878003-1878022 | None:intergenic | 40.0% | |
| ACACTGAGACAGAAATTGTC+AGG | - | chr7_1:1878025-1878044 | Msa1004390:intron | 40.0% | |
| !!! | CAAGAGCACTTTTGTCATGT+GGG | - | chr7_1:1878164-1878183 | Msa1004390:intron | 40.0% |
| ! | CCCACATTGATTGATAGCAT+TGG | - | chr7_1:1878354-1878373 | Msa1004390:intron | 40.0% |
| TTAAGGTGAAATGGCAACCA+AGG | - | chr7_1:1878394-1878413 | Msa1004390:intron | 40.0% | |
| ! | TCTGTGGTTAGCTATAAGGA+AGG | - | chr7_1:1878429-1878448 | Msa1004390:intron | 40.0% |
| TGAACAATTACCGGTGCATT+AGG | + | chr7_1:1878489-1878508 | None:intergenic | 40.0% | |
| GTTTGTAGCGATTACACAGA+TGG | + | chr7_1:1878582-1878601 | None:intergenic | 40.0% | |
| TGTGTAATCGCTACAAACAC+AGG | - | chr7_1:1878584-1878603 | Msa1004390:intron | 40.0% | |
| TGATGATAGTACCATGTCCT+TGG | - | chr7_1:1878671-1878690 | Msa1004390:intron | 40.0% | |
| CGTTTCAACATCATTCTCAG+CGG | + | chr7_1:1878829-1878848 | None:intergenic | 40.0% | |
| TCTCACTCATAGGTGTAAGT+TGG | + | chr7_1:1878857-1878876 | None:intergenic | 40.0% | |
| AGTGAGAAATCTACTACACC+AGG | - | chr7_1:1878870-1878889 | Msa1004390:intron | 40.0% | |
| ATCATCAAACGCATCTGGTA+GGG | + | chr7_1:1878958-1878977 | None:intergenic | 40.0% | |
| TATCATCAAACGCATCTGGT+AGG | + | chr7_1:1878959-1878978 | None:intergenic | 40.0% | |
| GTGATATCATCAAACGCATC+TGG | + | chr7_1:1878963-1878982 | None:intergenic | 40.0% | |
| ! | GGATGATGAATGTTTTGCAG+GGG | + | chr7_1:1878985-1879004 | None:intergenic | 40.0% |
| TTTGATGAGCTTGACTCTCT+TGG | + | chr7_1:1879006-1879025 | None:intergenic | 40.0% | |
| ! | CTGACACATTTTGTCCATGG+TGG | + | chr7_1:1874639-1874658 | None:intergenic | 45.0% |
| ! | GCTCTGACACATTTTGTCCA+TGG | + | chr7_1:1874642-1874661 | None:intergenic | 45.0% |
| TGGACAAAATGTGTCAGAGC+CGG | - | chr7_1:1874642-1874661 | Msa1004390:CDS | 45.0% | |
| ! | TACTGGTTGATCAGACAGTC+CGG | + | chr7_1:1874664-1874683 | None:intergenic | 45.0% |
| ! | GGTGCACTGAGTGCTATTAA+GGG | + | chr7_1:1875071-1875090 | None:intergenic | 45.0% |
| ! | TCTACGTTGCACTGACACTT+TGG | + | chr7_1:1875196-1875215 | None:intergenic | 45.0% |
| GAGAGTGAAAGCCAAAGCAT+AGG | - | chr7_1:1875378-1875397 | Msa1004390:CDS | 45.0% | |
| !! | GTTGATGGTAGAAGTGAGAG+TGG | + | chr7_1:1875527-1875546 | None:intergenic | 45.0% |
| ACGATCAAAGCGACAGTTGA+TGG | + | chr7_1:1875542-1875561 | None:intergenic | 45.0% | |
| ! | GAAAGTGGTGTCAATAGAGG+AGG | + | chr7_1:1875573-1875592 | None:intergenic | 45.0% |
| ! | GAGGAAAGTGGTGTCAATAG+AGG | + | chr7_1:1875576-1875595 | None:intergenic | 45.0% |
| ACCTCTACATTGTGCATAGG+AGG | - | chr7_1:1875741-1875760 | Msa1004390:intron | 45.0% | |
| ACCTCCTATGCACAATGTAG+AGG | + | chr7_1:1875745-1875764 | None:intergenic | 45.0% | |
| ATGTTTGGACCTATCCTCAC+TGG | + | chr7_1:1875833-1875852 | None:intergenic | 45.0% | |
| TGAAGACGAAGTCATTCACC+TGG | + | chr7_1:1876734-1876753 | None:intergenic | 45.0% | |
| GGTGAATGACTTCGTCTTCA+AGG | - | chr7_1:1876734-1876753 | Msa1004390:CDS | 45.0% | |
| ! | TTCAAGCTAATCTGGACTGG+TGG | - | chr7_1:1876771-1876790 | Msa1004390:CDS | 45.0% |
| !! | AATCTGGACTGGTGGAACAA+CGG | - | chr7_1:1876779-1876798 | Msa1004390:CDS | 45.0% |
| CTGAAATAGCTGCTGGAAGA+TGG | - | chr7_1:1876859-1876878 | Msa1004390:CDS | 45.0% | |
| AGCAATGAAAGGAAGGAAGC+TGG | - | chr7_1:1877268-1877287 | Msa1004390:intron | 45.0% | |
| GCTATGCGAAGAGGTGATAA+TGG | + | chr7_1:1877556-1877575 | None:intergenic | 45.0% | |
| ACAGTAATGGCTATGCGAAG+AGG | + | chr7_1:1877565-1877584 | None:intergenic | 45.0% | |
| AGCTGGATAATCTCGGACAA+AGG | + | chr7_1:1877751-1877770 | None:intergenic | 45.0% | |
| CGAGATTATCCAGCTTGATC+AGG | - | chr7_1:1877756-1877775 | Msa1004390:intron | 45.0% | |
| TTAACTCAACCAGGTTTGGC+TGG | - | chr7_1:1877926-1877945 | Msa1004390:intron | 45.0% | |
| CAAGTAATACCAGCCAAACC+TGG | + | chr7_1:1877938-1877957 | None:intergenic | 45.0% | |
| CAGGTTTGGCTGGTATTACT+TGG | - | chr7_1:1877936-1877955 | Msa1004390:intron | 45.0% | |
| GTATGGAGGTTTATCACCCT+TGG | + | chr7_1:1877986-1878005 | None:intergenic | 45.0% | |
| CCAGAATCACATGTGTATGG+AGG | + | chr7_1:1878000-1878019 | None:intergenic | 45.0% | |
| CCTCCATACACATGTGATTC+TGG | - | chr7_1:1877997-1878016 | Msa1004390:intron | 45.0% | |
| !! | AGTGCTCTTGGTGTCTTCAT+AGG | + | chr7_1:1878154-1878173 | None:intergenic | 45.0% |
| !! | CCACATGACAAAAGTGCTCT+TGG | + | chr7_1:1878166-1878185 | None:intergenic | 45.0% |
| !!! | CCAAGAGCACTTTTGTCATG+TGG | - | chr7_1:1878163-1878182 | Msa1004390:intron | 45.0% |
| CCAACAATTGAGAGACCTCA+CGG | + | chr7_1:1878191-1878210 | None:intergenic | 45.0% | |
| CGTGAGGTCTCTCAATTGTT+GGG | - | chr7_1:1878189-1878208 | Msa1004390:intron | 45.0% | |
| GAATTTCTGCTGCTCAGCTT+AGG | - | chr7_1:1878211-1878230 | Msa1004390:intron | 45.0% | |
| GCTTAGGCTGAACATGATTG+AGG | - | chr7_1:1878227-1878246 | Msa1004390:intron | 45.0% | |
| TTCAGGCTGGGATCACTAAT+AGG | - | chr7_1:1878322-1878341 | Msa1004390:intron | 45.0% | |
| CTTATAGCTAACCACAGAGC+CGG | + | chr7_1:1878427-1878446 | None:intergenic | 45.0% | |
| AGGTTTGTCAACAACCTCAG+TGG | + | chr7_1:1878631-1878650 | None:intergenic | 45.0% | |
| GATGACTTCTGTTTGATGCC+TGG | + | chr7_1:1878891-1878910 | None:intergenic | 45.0% | |
| TCATCAAACGCATCTGGTAG+GGG | + | chr7_1:1878957-1878976 | None:intergenic | 45.0% | |
| TGCGCGAATCAACGACTTAC+TGG | + | chr7_1:1874681-1874700 | None:intergenic | 50.0% | |
| CTTGACACGCCCTTACAAGT+TGG | - | chr7_1:1874802-1874821 | Msa1004390:intron | 50.0% | |
| ! | CTGAGTGCTATTAAGGGAGG+TGG | + | chr7_1:1875065-1875084 | None:intergenic | 50.0% |
| ! | GCACTGAGTGCTATTAAGGG+AGG | + | chr7_1:1875068-1875087 | None:intergenic | 50.0% |
| ! | GGGTGCACTGAGTGCTATTA+AGG | + | chr7_1:1875072-1875091 | None:intergenic | 50.0% |
| !! | CTATATGTGTTGGTGGTGCC+AGG | - | chr7_1:1875158-1875177 | Msa1004390:CDS | 50.0% |
| !! | CTTTGGAATAAAGGCGTGCC+TGG | + | chr7_1:1875179-1875198 | None:intergenic | 50.0% |
| !! | CTCTTGAAGAGGCACTGTTG+AGG | + | chr7_1:1875457-1875476 | None:intergenic | 50.0% |
| CCAAGGTGTGTCTCTTGAAG+AGG | + | chr7_1:1875468-1875487 | None:intergenic | 50.0% | |
| CCTCTTCAAGAGACACACCT+TGG | - | chr7_1:1875465-1875484 | Msa1004390:intron | 50.0% | |
| ! | CCAGCAGCTATTTCAGCCAA+GGG | + | chr7_1:1876855-1876874 | None:intergenic | 50.0% |
| ! | TCCAGCAGCTATTTCAGCCA+AGG | + | chr7_1:1876856-1876875 | None:intergenic | 50.0% |
| GACTCTAGCTGGTCCTGTTT+AGG | + | chr7_1:1877643-1877662 | None:intergenic | 50.0% | |
| ! | GCTGACTTTGTGACTCTAGC+TGG | + | chr7_1:1877654-1877673 | None:intergenic | 50.0% |
| ! | TTTTGTCATGTGGGACCGTG+AGG | - | chr7_1:1878173-1878192 | Msa1004390:intron | 50.0% |
| CCGTGAGGTCTCTCAATTGT+TGG | - | chr7_1:1878188-1878207 | Msa1004390:intron | 50.0% | |
| AGGTGAAATGGCAACCAAGG+TGG | - | chr7_1:1878397-1878416 | Msa1004390:intron | 50.0% | |
| ! | CGGCTCTGTGGTTAGCTATA+AGG | - | chr7_1:1878425-1878444 | Msa1004390:intron | 50.0% |
| TTTGCCTGCTGAATCCACTG+AGG | - | chr7_1:1878614-1878633 | Msa1004390:intron | 50.0% | |
| ! | ACAACCTCAGTGGATTCAGC+AGG | + | chr7_1:1878621-1878640 | None:intergenic | 50.0% |
| TTTATGCAGCCTGGGCTATC+CGG | - | chr7_1:1878801-1878820 | Msa1004390:intron | 50.0% | |
| AACATCATTCTCAGCGGTGC+CGG | + | chr7_1:1878823-1878842 | None:intergenic | 50.0% | |
| CTGGCTTAGCAGGAGTGATT+TGG | + | chr7_1:1878917-1878936 | None:intergenic | 50.0% | |
| !! | GGAACAGATACTGGCTTAGC+AGG | + | chr7_1:1878927-1878946 | None:intergenic | 50.0% |
| GGCAAAGCAGGAACAGATAC+TGG | + | chr7_1:1878936-1878955 | None:intergenic | 50.0% | |
| GTGATTGTGGCTCGTAGCGA+TGG | + | chr7_1:1875494-1875513 | None:intergenic | 55.0% | |
| CCCTTGGCTGAAATAGCTGC+TGG | - | chr7_1:1876852-1876871 | Msa1004390:intron | 55.0% | |
| TGGCAACCAAGGTGGAAGAC+CGG | - | chr7_1:1878405-1878424 | Msa1004390:intron | 55.0% | |
| AGGGAGACTGCGAGCAATGC+AGG | + | chr7_1:1875422-1875441 | None:intergenic | 60.0% | |
| GAAAGTCTGGGCACACGCAC+GGG | + | chr7_1:1875598-1875617 | None:intergenic | 60.0% | |
| CGAAAGTCTGGGCACACGCA+CGG | + | chr7_1:1875599-1875618 | None:intergenic | 60.0% | |
| CGTGCGTGTGCCCAGACTTT+CGG | - | chr7_1:1875597-1875616 | Msa1004390:CDS | 60.0% | |
| ACAGAGCCGGTCTTCCACCT+TGG | + | chr7_1:1878414-1878433 | None:intergenic | 60.0% | |
| ! | AAGGTGGAAGACCGGCTCTG+TGG | - | chr7_1:1878413-1878432 | Msa1004390:intron | 60.0% |
| GCATCTGGTAGGGGCAAAGC+AGG | + | chr7_1:1878948-1878967 | None:intergenic | 60.0% | |
| GCTCGTAGCGATGGACGCCA+AGG | + | chr7_1:1875485-1875504 | None:intergenic | 65.0% | |
| GCACACGCACGGGAGGAAAG+TGG | + | chr7_1:1875588-1875607 | None:intergenic | 65.0% | |
| AGTCTGGGCACACGCACGGG+AGG | + | chr7_1:1875595-1875614 | None:intergenic | 70.0% | |
| ! | TCAGCGGTGCCGGATAGCCC+AGG | + | chr7_1:1878813-1878832 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 1874543 | 1879040 | 1874543 | ID=Msa1004390;Name=Msa1004390 |
| chr7_1 | mRNA | 1874543 | 1879040 | 1874543 | ID=Msa1004390-mRNA-1;Parent=Msa1004390;Name=Msa1004390-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.54|0.25|0.91|0.81|0.75|12|0|496 |
| chr7_1 | exon | 1879032 | 1879040 | 1879032 | ID=Msa1004390-mRNA-1:exon:734;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1876855 | 1876950 | 1876855 | ID=Msa1004390-mRNA-1:exon:733;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1876683 | 1876848 | 1876683 | ID=Msa1004390-mRNA-1:exon:732;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1876490 | 1876583 | 1876490 | ID=Msa1004390-mRNA-1:exon:731;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1876249 | 1876373 | 1876249 | ID=Msa1004390-mRNA-1:exon:730;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1876065 | 1876155 | 1876065 | ID=Msa1004390-mRNA-1:exon:729;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1875806 | 1875947 | 1875806 | ID=Msa1004390-mRNA-1:exon:728;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1875537 | 1875694 | 1875537 | ID=Msa1004390-mRNA-1:exon:727;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1875335 | 1875455 | 1875335 | ID=Msa1004390-mRNA-1:exon:726;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1875086 | 1875256 | 1875086 | ID=Msa1004390-mRNA-1:exon:725;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1874891 | 1874977 | 1874891 | ID=Msa1004390-mRNA-1:exon:724;Parent=Msa1004390-mRNA-1 |
| chr7_1 | exon | 1874543 | 1874773 | 1874543 | ID=Msa1004390-mRNA-1:exon:723;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1879032 | 1879040 | 1879032 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1876855 | 1876950 | 1876855 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1876683 | 1876848 | 1876683 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1876490 | 1876583 | 1876490 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1876249 | 1876373 | 1876249 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1876065 | 1876155 | 1876065 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1875806 | 1875947 | 1875806 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1875537 | 1875694 | 1875537 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1875335 | 1875455 | 1875335 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1875086 | 1875256 | 1875086 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1874891 | 1874977 | 1874891 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| chr7_1 | CDS | 1874543 | 1874773 | 1874543 | ID=Msa1004390-mRNA-1:cds;Parent=Msa1004390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
