Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004910 | XP_013447820.1 | 95.479 | 376 | 10 | 2 | 1 | 375 | 1 | 370 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004910 | sp|Q84L31|RD23C_ARATH | 60.757 | 423 | 114 | 8 | 1 | 375 | 1 | 419 | 9.57e-162 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004910 | A0A072TVG7 | 95.479 | 376 | 10 | 2 | 1 | 375 | 1 | 370 | 0.0 | 706 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070740 | Msa1004910 | -0.800175 | 1.630606e-48 | -8.615850e-47 |
| Msa1004910 | Msa1168960 | 0.802410 | 5.684849e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004910 | MtrunA17_Chr7g0214981 | 95.479 | 376 | 10 | 2 | 1 | 375 | 1 | 370 | 0.0 | 706 |
| Msa1004910 | MtrunA17_Chr1g0209971 | 64.160 | 399 | 116 | 6 | 1 | 375 | 1 | 396 | 4.18e-166 | 470 |
| Msa1004910 | MtrunA17_Chr2g0334051 | 56.201 | 379 | 149 | 6 | 1 | 375 | 1 | 366 | 5.12e-131 | 380 |
| Msa1004910 | MtrunA17_Chr1g0146801 | 60.714 | 84 | 32 | 1 | 1 | 83 | 1 | 84 | 8.91e-26 | 100 |
| Msa1004910 | MtrunA17_Chr7g0226581 | 60.526 | 76 | 30 | 0 | 1 | 76 | 205 | 280 | 3.27e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1004910 | AT3G02540.3 | 59.770 | 435 | 98 | 9 | 1 | 375 | 1 | 418 | 7.31e-163 | 463 |
| Msa1004910 | AT3G02540.1 | 60.757 | 423 | 114 | 8 | 1 | 375 | 1 | 419 | 9.73e-163 | 462 |
| Msa1004910 | AT5G38470.1 | 67.277 | 382 | 113 | 7 | 1 | 375 | 1 | 377 | 3.39e-162 | 459 |
| Msa1004910 | AT1G79650.2 | 55.091 | 383 | 146 | 6 | 1 | 375 | 1 | 365 | 1.99e-132 | 384 |
| Msa1004910 | AT1G79650.1 | 53.213 | 389 | 150 | 7 | 1 | 375 | 1 | 371 | 9.66e-132 | 382 |
| Msa1004910 | AT1G79650.4 | 52.840 | 405 | 151 | 9 | 1 | 375 | 1 | 395 | 3.59e-129 | 376 |
| Msa1004910 | AT1G16190.1 | 52.618 | 382 | 160 | 6 | 1 | 375 | 1 | 368 | 5.73e-129 | 375 |
| Msa1004910 | AT5G38470.2 | 64.526 | 327 | 103 | 7 | 1 | 319 | 1 | 322 | 4.05e-124 | 361 |
| Msa1004910 | AT1G16190.2 | 52.101 | 357 | 150 | 6 | 26 | 375 | 3 | 345 | 6.13e-117 | 343 |
| Msa1004910 | AT1G79650.3 | 48.843 | 389 | 147 | 8 | 1 | 375 | 1 | 351 | 1.22e-113 | 335 |
| Msa1004910 | AT3G02540.2 | 54.785 | 303 | 91 | 5 | 1 | 261 | 1 | 299 | 9.09e-95 | 285 |
| Msa1004910 | AT5G16090.1 | 56.579 | 76 | 33 | 0 | 1 | 76 | 1 | 76 | 1.16e-21 | 91.3 |
| Msa1004910 | AT5G16090.1 | 45.833 | 96 | 52 | 0 | 274 | 369 | 74 | 169 | 3.24e-18 | 81.6 |
Find 128 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATGGCCTCGTTCTCTTC+TGG | 0.133988 | 7_1:-2614087 | None:intergenic |
| ACTAATCATCAAACTCATTT+TGG | 0.167094 | 7_1:-2614531 | None:intergenic |
| TAATCAGGGCATTCCCAATT+TGG | 0.173680 | 7_1:+2613302 | Msa1004910:intron |
| TGCTGGAGCTTCAGCTTGTT+CGG | 0.253567 | 7_1:-2613083 | None:intergenic |
| TTCTTTGCAGCCCATGCTTC+AGG | 0.263564 | 7_1:+2613577 | Msa1004910:intron |
| GAATGGCCTCGTTCTCTTCT+GGG | 0.275717 | 7_1:-2614086 | None:intergenic |
| TAGATATTCAACAGCTCTTT+CGG | 0.288694 | 7_1:-2612532 | None:intergenic |
| TGTTTGTGTCCTAAACTCTT+TGG | 0.298373 | 7_1:+2614622 | Msa1004910:three_prime_UTR |
| GCTGGAGCTTCAGCTTGTTC+GGG | 0.312279 | 7_1:-2613082 | None:intergenic |
| AGAGGGACAGTTGGGTGCTT+TGG | 0.326637 | 7_1:+2614041 | Msa1004910:CDS |
| AGATATTCAACAGCTCTTTC+GGG | 0.333255 | 7_1:-2612531 | None:intergenic |
| TATCCAACAAATTCTAGAAA+TGG | 0.339571 | 7_1:+2612449 | Msa1004910:CDS |
| TGGATGAGTTCCATTAGGTT+TGG | 0.345262 | 7_1:-2613617 | None:intergenic |
| AACCAGCTGTGCCTGCTGTT+GGG | 0.345512 | 7_1:+2613164 | Msa1004910:CDS |
| TCTAGAATTTGTTGGATAGT+TGG | 0.348951 | 7_1:-2612444 | None:intergenic |
| ATCCAACAAATTCTAGAAAT+GGG | 0.348997 | 7_1:+2612450 | Msa1004910:CDS |
| AAGTTCAGTGGGTTGGTGTT+AGG | 0.351972 | 7_1:-2613187 | None:intergenic |
| CAACCAGCTGTGCCTGCTGT+TGG | 0.357460 | 7_1:+2613163 | Msa1004910:CDS |
| AGGCAAAGAACTTGCAGGTT+GGG | 0.363767 | 7_1:-2611985 | None:intergenic |
| AATCAGGGCATTCCCAATTT+GGG | 0.364424 | 7_1:+2613303 | Msa1004910:intron |
| AACAGCAGGCACAGCTGGTT+GGG | 0.370179 | 7_1:-2613161 | None:intergenic |
| GCTCTTGGATGAGTTCCATT+AGG | 0.373949 | 7_1:-2613622 | None:intergenic |
| ATCACTTCTCCAAAGAGTTT+AGG | 0.374572 | 7_1:-2614631 | None:intergenic |
| TACAGGACCTTGCGCAAGAT+TGG | 0.377380 | 7_1:-2612148 | None:intergenic |
| AATAACTGTAAATAAATCTA+TGG | 0.378769 | 7_1:-2614736 | None:intergenic |
| TGGGCTGGAGGCTGAGCTGA+AGG | 0.382041 | 7_1:-2613142 | None:intergenic |
| TACGTAGTGGGAGGAGTTAC+AGG | 0.385358 | 7_1:-2612165 | None:intergenic |
| GCTGAATCTAATCTCATTGC+TGG | 0.395901 | 7_1:+2612408 | Msa1004910:CDS |
| GCAGGCACAGCTGGTTGGGC+TGG | 0.396304 | 7_1:-2613157 | None:intergenic |
| CAGCCCATGCTTCAGGAACT+AGG | 0.397520 | 7_1:+2613584 | Msa1004910:intron |
| TGTCGTGATCATGTTGTCTA+AGG | 0.399055 | 7_1:+2610888 | Msa1004910:CDS |
| AACCAAGCTGAGAAGATTGC+GGG | 0.400142 | 7_1:+2614822 | Msa1004910:three_prime_UTR |
| TCATCAAGGAAAAGTGCTTA+AGG | 0.402026 | 7_1:+2610822 | Msa1004910:CDS |
| GCACCATTGTTCTCAAGGCT+TGG | 0.405554 | 7_1:-2613464 | None:intergenic |
| AAAACAAAATCCAAACCTAA+TGG | 0.410836 | 7_1:+2613607 | Msa1004910:CDS |
| GATTAACGTGAAGACTCTTA+AGG | 0.418379 | 7_1:+2609706 | Msa1004910:CDS |
| TGCTTGCACCATTGTTCTCA+AGG | 0.420679 | 7_1:-2613469 | None:intergenic |
| TCTGGCAGCCAACTACCTAT+TGG | 0.424230 | 7_1:+2614504 | Msa1004910:CDS |
| GGCACAGCTGGTTGGGCTGG+AGG | 0.426558 | 7_1:-2613154 | None:intergenic |
| CAATTCTAATTTCTAGTCAA+TGG | 0.433095 | 7_1:-2614701 | None:intergenic |
| GAAACTTCACAGCAGAACTT+TGG | 0.435391 | 7_1:-2609591 | None:intergenic |
| ATGGTGATTTACAGATACTT+TGG | 0.436103 | 7_1:-2614682 | None:intergenic |
| AGAAGTCAGCTTGATGCTCT+TGG | 0.439778 | 7_1:-2613637 | None:intergenic |
| AGCAAACCCTCAAATCTTGC+AGG | 0.441602 | 7_1:+2613488 | Msa1004910:CDS |
| TTCTTCCTGCCCAACATTGG+TGG | 0.442898 | 7_1:-2613116 | None:intergenic |
| ACTAGAAATTAGAATTGTGT+TGG | 0.448282 | 7_1:+2614707 | Msa1004910:three_prime_UTR |
| GGCCCAACAGCAGGCACAGC+TGG | 0.453907 | 7_1:-2613166 | None:intergenic |
| CCGTATCTTGAGCGTTCACT+TGG | 0.457398 | 7_1:-2609745 | None:intergenic |
| ATTAACGTGAAGACTCTTAA+GGG | 0.458211 | 7_1:+2609707 | Msa1004910:CDS |
| ATGATACCTGCAAGATTTGA+GGG | 0.458359 | 7_1:-2613494 | None:intergenic |
| CTAGAAATTAGAATTGTGTT+GGG | 0.462802 | 7_1:+2614708 | Msa1004910:three_prime_UTR |
| GGGCTGGAGGCTGAGCTGAA+GGG | 0.463910 | 7_1:-2613141 | None:intergenic |
| TTGGTGATCCAATAGGTAGT+TGG | 0.464218 | 7_1:-2614512 | None:intergenic |
| ATAAGCATTTGTTGTGCAGC+AGG | 0.465256 | 7_1:-2610799 | None:intergenic |
| CACCGCGCACACGGTGGAGG+AGG | 0.470373 | 7_1:-2609651 | None:intergenic |
| TCAGCTTGGCCGTATGTGTC+AGG | 0.471237 | 7_1:-2612390 | None:intergenic |
| GATGATACCTGCAAGATTTG+AGG | 0.473748 | 7_1:-2613495 | None:intergenic |
| TGCTGCTTCAGCTGCCCCAC+CGG | 0.476716 | 7_1:+2611659 | Msa1004910:CDS |
| TTGGTGGATGCAGCAACTGC+TGG | 0.482507 | 7_1:-2613100 | None:intergenic |
| AACCCGCAATCTTCTCAGCT+TGG | 0.482634 | 7_1:-2614824 | None:intergenic |
| AGAGAACGAGGCCATTCAAC+GGG | 0.484161 | 7_1:+2614092 | Msa1004910:CDS |
| TTTCCTAGTTCCTGAAGCAT+GGG | 0.485024 | 7_1:-2613587 | None:intergenic |
| TTGCTGCATCCACCAATGTT+GGG | 0.488460 | 7_1:+2613107 | Msa1004910:CDS |
| TAATCTTACTCTTCGCCTCC+AGG | 0.493950 | 7_1:-2613677 | None:intergenic |
| CAACAGCAGGCACAGCTGGT+TGG | 0.493994 | 7_1:-2613162 | None:intergenic |
| GAGGCAAAGAACTTGCAGGT+TGG | 0.500324 | 7_1:-2611986 | None:intergenic |
| GAGGCTGAGGTGTTGACGAA+GGG | 0.503739 | 7_1:-2612010 | None:intergenic |
| TTACGTCTTATAAATGAGCC+TGG | 0.509014 | 7_1:+2613659 | Msa1004910:CDS |
| TGCATCCACCAATGTTGGGC+AGG | 0.512054 | 7_1:+2613111 | Msa1004910:CDS |
| CCCCTCCTCCACCGTGTGCG+CGG | 0.514081 | 7_1:+2609649 | Msa1004910:five_prime_UTR |
| GTTGCTGCATCCACCAATGT+TGG | 0.517414 | 7_1:+2613106 | Msa1004910:CDS |
| CCCACTGAACTTGTTCCCTC+AGG | 0.518809 | 7_1:+2613198 | Msa1004910:CDS |
| ATTTCTGCGAAACAGTCAAC+AGG | 0.524257 | 7_1:+2613353 | Msa1004910:CDS |
| ACAGTTGATGCAGGAGGCTG+AGG | 0.524763 | 7_1:-2612023 | None:intergenic |
| CTCTTCTGGGGTGATAGTAA+TGG | 0.530516 | 7_1:-2614073 | None:intergenic |
| CAACAAATGCTTATTCATCA+AGG | 0.532343 | 7_1:+2610808 | Msa1004910:CDS |
| TCACTAGCTTACCCGTTGAA+TGG | 0.535651 | 7_1:-2614103 | None:intergenic |
| AGGAACCTAGAGGGACAGTT+GGG | 0.536808 | 7_1:+2614033 | Msa1004910:intron |
| ATGTCAGATGCTTACGTAGT+GGG | 0.537334 | 7_1:-2612177 | None:intergenic |
| TACTGTCCGACAGTTGATGC+AGG | 0.540212 | 7_1:-2612032 | None:intergenic |
| CGACCGAGATCTTGTGTTGG+AGG | 0.543876 | 7_1:+2614453 | Msa1004910:CDS |
| AATGGCCTCGTTCTCTTCTG+GGG | 0.544654 | 7_1:-2614085 | None:intergenic |
| CCAAGTGAACGCTCAAGATA+CGG | 0.549415 | 7_1:+2609745 | Msa1004910:CDS |
| AAATGAAAATGCAGGTGACT+TGG | 0.550169 | 7_1:+2613329 | Msa1004910:CDS |
| ACCGCGCACACGGTGGAGGA+GGG | 0.551093 | 7_1:-2609650 | None:intergenic |
| GGAGGCTGAGGTGTTGACGA+AGG | 0.552268 | 7_1:-2612011 | None:intergenic |
| CAATGAGATTAGATTCAGCT+TGG | 0.553063 | 7_1:-2612404 | None:intergenic |
| CAGGAACCTAGAGGGACAGT+TGG | 0.559902 | 7_1:+2614032 | Msa1004910:intron |
| TGGGGCAGCTGAAGCAGCAG+AGG | 0.565661 | 7_1:-2611655 | None:intergenic |
| AAGCACCCAACTGTCCCTCT+AGG | 0.566429 | 7_1:-2614038 | None:intergenic |
| TCCAACAAATTCTAGAAATG+GGG | 0.567601 | 7_1:+2612451 | Msa1004910:CDS |
| GCTTAAGGATGAGACTACCT+TGG | 0.575347 | 7_1:+2610837 | Msa1004910:CDS |
| TTGGTGTTAGGCCCAACAGC+AGG | 0.576242 | 7_1:-2613175 | None:intergenic |
| AGGGAACAAGTTCAGTGGGT+TGG | 0.582012 | 7_1:-2613194 | None:intergenic |
| TTTGGCAGCTTGAGGATATG+GGG | 0.582461 | 7_1:+2614428 | Msa1004910:intron |
| CAGAATAAGGTATCATCAAG+TGG | 0.584643 | 7_1:+2611630 | Msa1004910:intron |
| CCGCGCACACGGTGGAGGAG+GGG | 0.598059 | 7_1:-2609649 | None:intergenic |
| TATATGCAGCACGAAGAGCT+CGG | 0.599886 | 7_1:-2612503 | None:intergenic |
| TAAGCATTTGTTGTGCAGCA+GGG | 0.603329 | 7_1:-2610798 | None:intergenic |
| CCAACAAATTCTAGAAATGG+GGG | 0.603400 | 7_1:+2612452 | Msa1004910:CDS |
| CTGGAGCTTCAGCTTGTTCG+GGG | 0.603945 | 7_1:-2613081 | None:intergenic |
| GGCTGAGGTGTTGACGAAGG+GGG | 0.612458 | 7_1:-2612008 | None:intergenic |
| CAGCCTCCTGCATCAACTGT+CGG | 0.612796 | 7_1:+2612026 | Msa1004910:CDS |
| AGGCTGAGGTGTTGACGAAG+GGG | 0.612893 | 7_1:-2612009 | None:intergenic |
| GAATTGTATATTTCAGTGCG+TGG | 0.614207 | 7_1:+2614762 | Msa1004910:three_prime_UTR |
| ACACCTCCAACACAAGATCT+CGG | 0.615119 | 7_1:-2614456 | None:intergenic |
| AAGAGAACGAGGCCATTCAA+CGG | 0.619236 | 7_1:+2614091 | Msa1004910:CDS |
| GTTCGACCGAGATCTTGTGT+TGG | 0.621206 | 7_1:+2614450 | Msa1004910:CDS |
| AGAAATCACCACCGCGCACA+CGG | 0.622074 | 7_1:-2609660 | None:intergenic |
| GGAGAATCCAATCTTGCGCA+AGG | 0.625254 | 7_1:+2612141 | Msa1004910:CDS |
| ACCTGAGGGAACAAGTTCAG+TGG | 0.626835 | 7_1:-2613199 | None:intergenic |
| CCTGAGGGAACAAGTTCAGT+GGG | 0.627488 | 7_1:-2613198 | None:intergenic |
| CTCCTCCACCGTGTGCGCGG+TGG | 0.629121 | 7_1:+2609652 | Msa1004910:five_prime_UTR |
| TAACCAAGCTGAGAAGATTG+CGG | 0.629188 | 7_1:+2614821 | Msa1004910:three_prime_UTR |
| TTGGGTGCAAATGAAAATGC+AGG | 0.634420 | 7_1:+2613321 | Msa1004910:CDS |
| AAAATTTGTACTTACCGGTG+GGG | 0.638126 | 7_1:-2611673 | None:intergenic |
| GTTCCAAGCCTTGAGAACAA+TGG | 0.641500 | 7_1:+2613461 | Msa1004910:intron |
| TGTATGACCAGGAACCTAGA+GGG | 0.644106 | 7_1:+2614024 | Msa1004910:intron |
| GCGCGGTGGTGATTTCTGAT+CGG | 0.654664 | 7_1:+2609666 | Msa1004910:five_prime_UTR |
| AGTGTGGTGCCTGACACATA+CGG | 0.655452 | 7_1:+2612381 | Msa1004910:intron |
| TCAGATGCTTACGTAGTGGG+AGG | 0.672680 | 7_1:-2612174 | None:intergenic |
| GGGGTGATAGTAATGGTCTG+AGG | 0.673723 | 7_1:-2614066 | None:intergenic |
| CAACAAATTCTAGAAATGGG+GGG | 0.675087 | 7_1:+2612453 | Msa1004910:CDS |
| TGTCCGACAGTTGATGCAGG+AGG | 0.687879 | 7_1:-2612029 | None:intergenic |
| AATCACCACCGCGCACACGG+TGG | 0.697495 | 7_1:-2609657 | None:intergenic |
| TTGTATGACCAGGAACCTAG+AGG | 0.704847 | 7_1:+2614023 | Msa1004910:intron |
| CGTCTTATAAATGAGCCTGG+AGG | 0.725357 | 7_1:+2613662 | Msa1004910:CDS |
| TATCACCCCAGAAGAGAACG+AGG | 0.729383 | 7_1:+2614080 | Msa1004910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAATTCAATTTTTTTTT+AGG | + | chr7_1:2609790-2609809 | Msa1004910:intron | 10.0% |
| !! | CAATAAAATTTAAACAATAA+TGG | + | chr7_1:2613250-2613269 | Msa1004910:intron | 10.0% |
| !!! | TTTTTTTGTTTTTTTTAATC+AGG | + | chr7_1:2613287-2613306 | Msa1004910:intron | 10.0% |
| !!! | TTTTTTGTTTTTTTTAATCA+GGG | + | chr7_1:2613288-2613307 | Msa1004910:intron | 10.0% |
| !! | ATAAATAATGAAAACTAATA+TGG | - | chr7_1:2613414-2613433 | None:intergenic | 10.0% |
| !! | TATGATATAGAAAAAATGAT+TGG | - | chr7_1:2611226-2611245 | None:intergenic | 15.0% |
| !!! | ATTGTATTATCTTTTAAGAT+CGG | - | chr7_1:2612800-2612819 | None:intergenic | 15.0% |
| !! | AAAGATAATACAATGAATAA+CGG | + | chr7_1:2612806-2612825 | Msa1004910:intron | 15.0% |
| !!! | ATTTGAATAACTATATCTTT+TGG | - | chr7_1:2613787-2613806 | None:intergenic | 15.0% |
| !! | AATAAACCATATATTAATCT+AGG | + | chr7_1:2613943-2613962 | Msa1004910:intron | 15.0% |
| !! | ATAAACCATATATTAATCTA+GGG | + | chr7_1:2613944-2613963 | Msa1004910:intron | 15.0% |
| !!! | TTATTACTTTTTGTTGTTTT+CGG | + | chr7_1:2614656-2614675 | Msa1004910:three_prime_UTR | 15.0% |
| !! | AATAACTGTAAATAAATCTA+TGG | - | chr7_1:2614739-2614758 | None:intergenic | 15.0% |
| !!! | CTTAATATTTTTTTATTTCG+TGG | + | chr7_1:2614791-2614810 | Msa1004910:three_prime_UTR | 15.0% |
| !! | TTGGTTGAAATAAATTGTTT+CGG | + | chr7_1:2609869-2609888 | Msa1004910:intron | 20.0% |
| !!! | TTTGAATGTTAAGTTGTTTA+TGG | + | chr7_1:2610388-2610407 | Msa1004910:intron | 20.0% |
| !!! | GATGATGTTATTTTAATGAT+TGG | + | chr7_1:2610927-2610946 | Msa1004910:intron | 20.0% |
| !!! | AGTATTTAAGTTAATTCAGT+TGG | + | chr7_1:2610986-2611005 | Msa1004910:intron | 20.0% |
| !!! | GTATTTAAGTTAATTCAGTT+GGG | + | chr7_1:2610987-2611006 | Msa1004910:intron | 20.0% |
| !!! | TATTTAAGTTAATTCAGTTG+GGG | + | chr7_1:2610988-2611007 | Msa1004910:intron | 20.0% |
| !!! | ACCTTTAATTCAATTTTTTG+TGG | + | chr7_1:2611050-2611069 | Msa1004910:intron | 20.0% |
| !! | TCCACAAAAAATTGAATTAA+AGG | - | chr7_1:2611054-2611073 | None:intergenic | 20.0% |
| !!! | TTTTTGATGTTTAAATGTGT+GGG | + | chr7_1:2611403-2611422 | Msa1004910:intron | 20.0% |
| !!! | AATTTTTGACAAAGATTGTA+AGG | - | chr7_1:2611714-2611733 | None:intergenic | 20.0% |
| !! | AAAATAGTGAAATTTCACAA+TGG | - | chr7_1:2611922-2611941 | None:intergenic | 20.0% |
| !! | AAAATATGAACTATATGATG+TGG | - | chr7_1:2612903-2612922 | None:intergenic | 20.0% |
| !!! | TATAGTTCATATTTTATCAC+AGG | + | chr7_1:2612908-2612927 | Msa1004910:intron | 20.0% |
| !! | ACACACAAATTATTATATTC+AGG | - | chr7_1:2612938-2612957 | None:intergenic | 20.0% |
| !!! | TTATGGTTTTGTATTAAGAA+TGG | + | chr7_1:2612972-2612991 | Msa1004910:intron | 20.0% |
| !! | CATGTATAATTTAACTGATA+GGG | + | chr7_1:2613055-2613074 | Msa1004910:intron | 20.0% |
| !!! | TTGTTTAAATTTTATTGCAC+AGG | - | chr7_1:2613247-2613266 | None:intergenic | 20.0% |
| !!! | AAGAGTAAGATTACTATTTT+AGG | + | chr7_1:2613687-2613706 | Msa1004910:intron | 20.0% |
| !!! | AAGATGGTTAGAAAATATTT+TGG | + | chr7_1:2613967-2613986 | Msa1004910:intron | 20.0% |
| !!! | AAAATTCTAGATTTTAACAC+TGG | + | chr7_1:2614555-2614574 | Msa1004910:three_prime_UTR | 20.0% |
| !!! | TATTACTTTTTGTTGTTTTC+GGG | + | chr7_1:2614657-2614676 | Msa1004910:three_prime_UTR | 20.0% |
| ! | TAATTATTGGGTTATGTTGT+TGG | + | chr7_1:2609835-2609854 | Msa1004910:intron | 25.0% |
| ! | GTTGTTGGTATAAAAAAAGT+TGG | + | chr7_1:2609850-2609869 | Msa1004910:intron | 25.0% |
| !! | AATGTTAAGTTGTTTATGGT+TGG | + | chr7_1:2610392-2610411 | Msa1004910:intron | 25.0% |
| ! | CTTCAAATTTGAATCAATTC+TGG | + | chr7_1:2610473-2610492 | Msa1004910:intron | 25.0% |
| !!! | TTGAGAAGTTTAAGTTTTTG+TGG | + | chr7_1:2610687-2610706 | Msa1004910:intron | 25.0% |
| !! | TATGTATGTTTGTTTCTTGA+TGG | + | chr7_1:2610718-2610737 | Msa1004910:intron | 25.0% |
| !! | TTTGTTTCTTGATGGATATT+AGG | + | chr7_1:2610726-2610745 | Msa1004910:intron | 25.0% |
| ! | TGATGTGAAGAAAAATATAG+AGG | + | chr7_1:2610753-2610772 | Msa1004910:CDS | 25.0% |
| ! | GATGTGAAGAAAAATATAGA+GGG | + | chr7_1:2610754-2610773 | Msa1004910:CDS | 25.0% |
| !!! | AGCTTTAATTTTCCATGTAA+TGG | + | chr7_1:2611173-2611192 | Msa1004910:intron | 25.0% |
| !!! | GCTTTAATTTTCCATGTAAT+GGG | + | chr7_1:2611174-2611193 | Msa1004910:intron | 25.0% |
| ! | TAGAAAAAATGATTGGATGT+TGG | - | chr7_1:2611219-2611238 | None:intergenic | 25.0% |
| !! | AACTGCATATTTGAAATTGA+TGG | - | chr7_1:2611249-2611268 | None:intergenic | 25.0% |
| ! | AAATATGCAGTTACAAAAGT+GGG | + | chr7_1:2611257-2611276 | Msa1004910:intron | 25.0% |
| !! | TGTGGATTTTTATTGGATAT+TGG | + | chr7_1:2611295-2611314 | Msa1004910:intron | 25.0% |
| !! | GTTTTTGATGTTTAAATGTG+TGG | + | chr7_1:2611402-2611421 | Msa1004910:intron | 25.0% |
| !!! | AACCTTCCTTCATTATTTTT+TGG | + | chr7_1:2611463-2611482 | Msa1004910:intron | 25.0% |
| !!! | ACCTTCCTTCATTATTTTTT+GGG | + | chr7_1:2611464-2611483 | Msa1004910:intron | 25.0% |
| !! | TTCTATTGCTTCCTTTTAAT+GGG | + | chr7_1:2611512-2611531 | Msa1004910:intron | 25.0% |
| ! | ACAAGAAAATTTGTACTTAC+CGG | - | chr7_1:2611681-2611700 | None:intergenic | 25.0% |
| ! | CCTAAATAATCATGCAAAAT+TGG | - | chr7_1:2611875-2611894 | None:intergenic | 25.0% |
| !! | CCAATTTTGCATGATTATTT+AGG | + | chr7_1:2611872-2611891 | Msa1004910:intron | 25.0% |
| !!! | TAAGTTCACATTTGTTTCTA+TGG | + | chr7_1:2612053-2612072 | Msa1004910:intron | 25.0% |
| ! | TTAAATTCATCTCACTTTCA+GGG | + | chr7_1:2612119-2612138 | Msa1004910:intron | 25.0% |
| ! | ATAAAACACTATCTACACAA+GGG | - | chr7_1:2612254-2612273 | None:intergenic | 25.0% |
| ! | AATAAAACACTATCTACACA+AGG | - | chr7_1:2612255-2612274 | None:intergenic | 25.0% |
| !! | TATCCAACAAATTCTAGAAA+TGG | + | chr7_1:2612449-2612468 | Msa1004910:CDS | 25.0% |
| !! | ATCCAACAAATTCTAGAAAT+GGG | + | chr7_1:2612450-2612469 | Msa1004910:CDS | 25.0% |
| ! | AATATTTGAGTGTCAAACAA+TGG | + | chr7_1:2612848-2612867 | Msa1004910:intron | 25.0% |
| ! | CCTATCAGTTAAATTATACA+TGG | - | chr7_1:2613057-2613076 | None:intergenic | 25.0% |
| ! | CCATGTATAATTTAACTGAT+AGG | + | chr7_1:2613054-2613073 | Msa1004910:intron | 25.0% |
| !! | TTTAATTGTGTTTTCTACAG+AGG | + | chr7_1:2613379-2613398 | Msa1004910:intron | 25.0% |
| !! | CTCCATTACTATAATTTTCT+AGG | + | chr7_1:2613533-2613552 | Msa1004910:intron | 25.0% |
| ! | GTCCTAGAAAATTATAGTAA+TGG | - | chr7_1:2613538-2613557 | None:intergenic | 25.0% |
| ! | AAAACAAAATCCAAACCTAA+TGG | + | chr7_1:2613607-2613626 | Msa1004910:CDS | 25.0% |
| !! | ACTATATCTTTTGGTGAAAA+TGG | - | chr7_1:2613778-2613797 | None:intergenic | 25.0% |
| ! | TATCCTTTGTATTATAACCA+AGG | - | chr7_1:2613921-2613940 | None:intergenic | 25.0% |
| ! | ATCTTCCCTAGATTAATATA+TGG | - | chr7_1:2613952-2613971 | None:intergenic | 25.0% |
| ! | ATATATTAATCTAGGGAAGA+TGG | + | chr7_1:2613951-2613970 | Msa1004910:intron | 25.0% |
| ! | TCACAATTAAAACAGCTTAA+TGG | - | chr7_1:2614138-2614157 | None:intergenic | 25.0% |
| ! | TTATTACATTATTGTGCAAG+AGG | - | chr7_1:2614390-2614409 | None:intergenic | 25.0% |
| !! | ACTAATCATCAAACTCATTT+TGG | - | chr7_1:2614534-2614553 | None:intergenic | 25.0% |
| !!! | CAATTCTAATTTCTAGTCAA+TGG | - | chr7_1:2614704-2614723 | None:intergenic | 25.0% |
| ! | ACTAGAAATTAGAATTGTGT+TGG | + | chr7_1:2614707-2614726 | Msa1004910:three_prime_UTR | 25.0% |
| ! | CTAGAAATTAGAATTGTGTT+GGG | + | chr7_1:2614708-2614727 | Msa1004910:three_prime_UTR | 25.0% |
| ATTAACGTGAAGACTCTTAA+GGG | + | chr7_1:2609707-2609726 | Msa1004910:CDS | 30.0% | |
| TTGAATGTAGTTACATGTGT+CGG | + | chr7_1:2609968-2609987 | Msa1004910:intron | 30.0% | |
| GTTCTTTAAACTAAACTGGA+AGG | - | chr7_1:2610076-2610095 | None:intergenic | 30.0% | |
| GTCAGTTCTTTAAACTAAAC+TGG | - | chr7_1:2610080-2610099 | None:intergenic | 30.0% | |
| ! | TGCAATATTAGTGCATGTTT+TGG | + | chr7_1:2610325-2610344 | Msa1004910:intron | 30.0% |
| CAAATTTGAATCAATTCTGG+AGG | + | chr7_1:2610476-2610495 | Msa1004910:intron | 30.0% | |
| ! | TTTCTTGATGGATATTAGGT+TGG | + | chr7_1:2610730-2610749 | Msa1004910:intron | 30.0% |
| CAACAAATGCTTATTCATCA+AGG | + | chr7_1:2610808-2610827 | Msa1004910:CDS | 30.0% | |
| CATTGAATGTCAATGGATAA+CGG | - | chr7_1:2611148-2611167 | None:intergenic | 30.0% | |
| CAAATATGCAGTTACAAAAG+TGG | + | chr7_1:2611256-2611275 | Msa1004910:intron | 30.0% | |
| AATATGCAGTTACAAAAGTG+GGG | + | chr7_1:2611258-2611277 | Msa1004910:intron | 30.0% | |
| ! | GCAGAATTGTGGATTTTTAT+TGG | + | chr7_1:2611288-2611307 | Msa1004910:intron | 30.0% |
| AGGAAGGTTAAAAGACATAA+AGG | - | chr7_1:2611452-2611471 | None:intergenic | 30.0% | |
| ACCCAAAAAATAATGAAGGA+AGG | - | chr7_1:2611468-2611487 | None:intergenic | 30.0% | |
| TAGCACCCAAAAAATAATGA+AGG | - | chr7_1:2611472-2611491 | None:intergenic | 30.0% | |
| ! | CTTCTATTGCTTCCTTTTAA+TGG | + | chr7_1:2611511-2611530 | Msa1004910:intron | 30.0% |
| ! | TCTATTGCTTCCTTTTAATG+GGG | + | chr7_1:2611513-2611532 | Msa1004910:intron | 30.0% |
| ! | TTTTCTTGTTCCCCATTAAA+AGG | - | chr7_1:2611526-2611545 | None:intergenic | 30.0% |
| TGGACAGAATATTACAACTT+AGG | - | chr7_1:2611571-2611590 | None:intergenic | 30.0% | |
| AGTTGTAATATTCTGTCCAT+TGG | + | chr7_1:2611572-2611591 | Msa1004910:intron | 30.0% | |
| AAAGTTTAGAAGTGAACCAA+TGG | - | chr7_1:2611591-2611610 | None:intergenic | 30.0% | |
| ATGATACCTTATTCTGCAAA+GGG | - | chr7_1:2611626-2611645 | None:intergenic | 30.0% | |
| CAAAATTGGATATTGTGAAG+AGG | - | chr7_1:2611861-2611880 | None:intergenic | 30.0% | |
| TGCTCGCTATTTATATATGT+AGG | + | chr7_1:2611959-2611978 | Msa1004910:intron | 30.0% | |
| GTTAAATTCATCTCACTTTC+AGG | + | chr7_1:2612118-2612137 | Msa1004910:intron | 30.0% | |
| TAAATTCATCTCACTTTCAG+GGG | + | chr7_1:2612120-2612139 | Msa1004910:intron | 30.0% | |
| ACATAAATATGCATCAGTTG+TGG | + | chr7_1:2612226-2612245 | Msa1004910:intron | 30.0% | |
| ATGCCTAAGAATAAGAGAAT+AGG | - | chr7_1:2612288-2612307 | None:intergenic | 30.0% | |
| !! | TCTAGAATTTGTTGGATAGT+TGG | - | chr7_1:2612447-2612466 | None:intergenic | 30.0% |
| ! | TCCAACAAATTCTAGAAATG+GGG | + | chr7_1:2612451-2612470 | Msa1004910:CDS | 30.0% |
| TAGATATTCAACAGCTCTTT+CGG | - | chr7_1:2612535-2612554 | None:intergenic | 30.0% | |
| !!! | GGGTGTTTTTGCTATTAATT+TGG | + | chr7_1:2612612-2612631 | Msa1004910:intron | 30.0% |
| GCAAATCATTAAAACTGTAC+TGG | - | chr7_1:2612763-2612782 | None:intergenic | 30.0% | |
| AATACAATGAATAACGGTGA+AGG | + | chr7_1:2612812-2612831 | Msa1004910:intron | 30.0% | |
| ! | GTTCATATTTTATCACAGGA+TGG | + | chr7_1:2612912-2612931 | Msa1004910:intron | 30.0% |
| ! | TTTTCATTTGCACCCAAATT+GGG | - | chr7_1:2613318-2613337 | None:intergenic | 30.0% |
| ! | ATTTTCATTTGCACCCAAAT+TGG | - | chr7_1:2613319-2613338 | None:intergenic | 30.0% |
| !!! | GAAAATGGTTTTAGTCAAGT+TGG | - | chr7_1:2613763-2613782 | None:intergenic | 30.0% |
| GAGCAAACAAATGTCTTAAT+AGG | - | chr7_1:2613993-2614012 | None:intergenic | 30.0% | |
| ! | ACTTTTGTATTTGTATGACC+AGG | + | chr7_1:2614013-2614032 | Msa1004910:intron | 30.0% |
| ATGGTGATTTACAGATACTT+TGG | - | chr7_1:2614685-2614704 | None:intergenic | 30.0% | |
| GATTAACGTGAAGACTCTTA+AGG | + | chr7_1:2609706-2609725 | Msa1004910:CDS | 35.0% | |
| ACCAGATACGATACTAAGAT+AGG | + | chr7_1:2610106-2610125 | Msa1004910:intron | 35.0% | |
| ACCTATCTTAGTATCGTATC+TGG | - | chr7_1:2610110-2610129 | None:intergenic | 35.0% | |
| ! | TGCATGTCTAGAATCAATTC+TGG | + | chr7_1:2610546-2610565 | Msa1004910:intron | 35.0% |
| AGTATGACTAAGCCTGTATT+TGG | - | chr7_1:2610589-2610608 | None:intergenic | 35.0% | |
| ! | AAAAATATAGAGGGAGCACA+GGG | + | chr7_1:2610763-2610782 | Msa1004910:CDS | 35.0% |
| !! | TCATCAAGGAAAAGTGCTTA+AGG | + | chr7_1:2610822-2610841 | Msa1004910:CDS | 35.0% |
| ! | AGCAACTTGATTTTCTTCCA+AGG | - | chr7_1:2610857-2610876 | None:intergenic | 35.0% |
| CTTCTCTCATTGAATGTCAA+TGG | - | chr7_1:2611155-2611174 | None:intergenic | 35.0% | |
| GACATAGAAAACCCATTACA+TGG | - | chr7_1:2611188-2611207 | None:intergenic | 35.0% | |
| CAGTGAAACACAATAGACAA+AGG | - | chr7_1:2611352-2611371 | None:intergenic | 35.0% | |
| GTTAGTAAGACATTAACAGC+AGG | + | chr7_1:2611425-2611444 | Msa1004910:intron | 35.0% | |
| TGGGGAACAAGAAAAATCAT+TGG | + | chr7_1:2611531-2611550 | Msa1004910:intron | 35.0% | |
| GATGATACCTTATTCTGCAA+AGG | - | chr7_1:2611627-2611646 | None:intergenic | 35.0% | |
| ! | CAGAATAAGGTATCATCAAG+TGG | + | chr7_1:2611630-2611649 | Msa1004910:intron | 35.0% |
| AAAATTTGTACTTACCGGTG+GGG | - | chr7_1:2611676-2611695 | None:intergenic | 35.0% | |
| GAAAATTTGTACTTACCGGT+GGG | - | chr7_1:2611677-2611696 | None:intergenic | 35.0% | |
| AGAAAATTTGTACTTACCGG+TGG | - | chr7_1:2611678-2611697 | None:intergenic | 35.0% | |
| AGATGGGTAATGCAATGATT+TGG | + | chr7_1:2611802-2611821 | Msa1004910:intron | 35.0% | |
| CCTAAGAATAAGAGAATAGG+CGG | - | chr7_1:2612285-2612304 | None:intergenic | 35.0% | |
| ATACGTTGTTTATTGCAGTG+TGG | + | chr7_1:2612365-2612384 | Msa1004910:intron | 35.0% | |
| CAATGAGATTAGATTCAGCT+TGG | - | chr7_1:2612407-2612426 | None:intergenic | 35.0% | |
| ! | CCAACAAATTCTAGAAATGG+GGG | + | chr7_1:2612452-2612471 | Msa1004910:CDS | 35.0% |
| ! | CAACAAATTCTAGAAATGGG+GGG | + | chr7_1:2612453-2612472 | Msa1004910:CDS | 35.0% |
| AGATATTCAACAGCTCTTTC+GGG | - | chr7_1:2612534-2612553 | None:intergenic | 35.0% | |
| ATGGGAAAGCTAGATTATGT+GGG | - | chr7_1:2612576-2612595 | None:intergenic | 35.0% | |
| TACTACAAGCATAAGTTGTG+CGG | - | chr7_1:2612725-2612744 | None:intergenic | 35.0% | |
| AAATGAAAATGCAGGTGACT+TGG | + | chr7_1:2613329-2613348 | Msa1004910:CDS | 35.0% | |
| ATGATACCTGCAAGATTTGA+GGG | - | chr7_1:2613497-2613516 | None:intergenic | 35.0% | |
| TTACGTCTTATAAATGAGCC+TGG | + | chr7_1:2613659-2613678 | Msa1004910:CDS | 35.0% | |
| ! | TAGGGTCATCATTTTATCAC+TGG | + | chr7_1:2613894-2613913 | Msa1004910:intron | 35.0% |
| ! | ATCATTTTATCACTGGACCT+TGG | + | chr7_1:2613901-2613920 | Msa1004910:intron | 35.0% |
| GGACCTTGGTTATAATACAA+AGG | + | chr7_1:2613915-2613934 | Msa1004910:intron | 35.0% | |
| TCTATGTATTTGCTTGTCCA+TGG | + | chr7_1:2614173-2614192 | Msa1004910:intron | 35.0% | |
| CAACATTACTAAACATGCCA+TGG | - | chr7_1:2614193-2614212 | None:intergenic | 35.0% | |
| ! | AGAGTGCAAAACCAGTATTT+TGG | - | chr7_1:2614269-2614288 | None:intergenic | 35.0% |
| ATTCTTCATGCATCTTTCTC+AGG | + | chr7_1:2614310-2614329 | Msa1004910:intron | 35.0% | |
| ! | CATAACTGACCATGACATTT+TGG | + | chr7_1:2614410-2614429 | Msa1004910:intron | 35.0% |
| CTTTGCTTGCAATAAAAACG+AGG | + | chr7_1:2614480-2614499 | Msa1004910:CDS | 35.0% | |
| TTGCAATAAAAACGAGGATC+TGG | + | chr7_1:2614486-2614505 | Msa1004910:CDS | 35.0% | |
| !! | ACTCATTTTGGTGATCCAAT+AGG | - | chr7_1:2614522-2614541 | None:intergenic | 35.0% |
| TGTTTGTGTCCTAAACTCTT+TGG | + | chr7_1:2614622-2614641 | Msa1004910:three_prime_UTR | 35.0% | |
| ATCACTTCTCCAAAGAGTTT+AGG | - | chr7_1:2614634-2614653 | None:intergenic | 35.0% | |
| GAATTGTATATTTCAGTGCG+TGG | + | chr7_1:2614762-2614781 | Msa1004910:three_prime_UTR | 35.0% | |
| GAAACTTCACAGCAGAACTT+TGG | - | chr7_1:2609594-2609613 | None:intergenic | 40.0% | |
| GAGATATCCACGTCTATTGT+CGG | + | chr7_1:2610045-2610064 | Msa1004910:intron | 40.0% | |
| TTCGATACATGTCAGTGTCT+GGG | - | chr7_1:2610215-2610234 | None:intergenic | 40.0% | |
| ACACTGACATGTATCGAACA+CGG | + | chr7_1:2610217-2610236 | Msa1004910:intron | 40.0% | |
| ! | GAACACGGGATTTAAAGTGT+TGG | + | chr7_1:2610232-2610251 | Msa1004910:intron | 40.0% |
| !! | AGTGTTGGTACTTTCTGACT+AGG | + | chr7_1:2610247-2610266 | Msa1004910:intron | 40.0% |
| ! | GTGTTGGTACTTTCTGACTA+GGG | + | chr7_1:2610248-2610267 | Msa1004910:intron | 40.0% |
| TGTTGGTACTTTCTGACTAG+GGG | + | chr7_1:2610249-2610268 | Msa1004910:intron | 40.0% | |
| ! | AATTCTGGCTACTCCAAACA+AGG | + | chr7_1:2610561-2610580 | Msa1004910:intron | 40.0% |
| ! | GAAAAATATAGAGGGAGCAC+AGG | + | chr7_1:2610762-2610781 | Msa1004910:CDS | 40.0% |
| !! | TAAGCATTTGTTGTGCAGCA+GGG | - | chr7_1:2610801-2610820 | None:intergenic | 40.0% |
| !! | ATAAGCATTTGTTGTGCAGC+AGG | - | chr7_1:2610802-2610821 | None:intergenic | 40.0% |
| TGTCGTGATCATGTTGTCTA+AGG | + | chr7_1:2610888-2610907 | Msa1004910:CDS | 40.0% | |
| GTTACAAAAGTGGGGTGATA+TGG | + | chr7_1:2611266-2611285 | Msa1004910:intron | 40.0% | |
| GATCTTCCCTTTGCAGAATA+AGG | + | chr7_1:2611617-2611636 | Msa1004910:intron | 40.0% | |
| TTAGTGACTGTGAAGCTAGA+TGG | + | chr7_1:2611785-2611804 | Msa1004910:intron | 40.0% | |
| TAGTGACTGTGAAGCTAGAT+GGG | + | chr7_1:2611786-2611805 | Msa1004910:intron | 40.0% | |
| ATGTCAGATGCTTACGTAGT+GGG | - | chr7_1:2612180-2612199 | None:intergenic | 40.0% | |
| TATGTCAGATGCTTACGTAG+TGG | - | chr7_1:2612181-2612200 | None:intergenic | 40.0% | |
| CCGCCTATTCTCTTATTCTT+AGG | + | chr7_1:2612282-2612301 | Msa1004910:intron | 40.0% | |
| GCTGAATCTAATCTCATTGC+TGG | + | chr7_1:2612408-2612427 | Msa1004910:CDS | 40.0% | |
| !! | CCCCCATTTCTAGAATTTGT+TGG | - | chr7_1:2612455-2612474 | None:intergenic | 40.0% |
| CATGGGAAAGCTAGATTATG+TGG | - | chr7_1:2612577-2612596 | None:intergenic | 40.0% | |
| CCATACTCGATACTTCACAT+GGG | - | chr7_1:2612594-2612613 | None:intergenic | 40.0% | |
| !! | CCATGTGAAGTATCGAGTAT+GGG | + | chr7_1:2612592-2612611 | Msa1004910:intron | 40.0% |
| ACTACAAGCATAAGTTGTGC+GGG | - | chr7_1:2612724-2612743 | None:intergenic | 40.0% | |
| TTTGTGTGTTTGCAGCAAAG+TGG | + | chr7_1:2612949-2612968 | Msa1004910:intron | 40.0% | |
| TGTTTGCAGCAAAGTGGTTA+TGG | + | chr7_1:2612955-2612974 | Msa1004910:intron | 40.0% | |
| ! | TAATCAGGGCATTCCCAATT+TGG | + | chr7_1:2613302-2613321 | Msa1004910:intron | 40.0% |
| ! | AATCAGGGCATTCCCAATTT+GGG | + | chr7_1:2613303-2613322 | Msa1004910:intron | 40.0% |
| TTGGGTGCAAATGAAAATGC+AGG | + | chr7_1:2613321-2613340 | Msa1004910:CDS | 40.0% | |
| ATTTCTGCGAAACAGTCAAC+AGG | + | chr7_1:2613353-2613372 | Msa1004910:CDS | 40.0% | |
| GATGATACCTGCAAGATTTG+AGG | - | chr7_1:2613498-2613517 | None:intergenic | 40.0% | |
| TTTCCTAGTTCCTGAAGCAT+GGG | - | chr7_1:2613590-2613609 | None:intergenic | 40.0% | |
| ! | TTTTCCTAGTTCCTGAAGCA+TGG | - | chr7_1:2613591-2613610 | None:intergenic | 40.0% |
| TGGATGAGTTCCATTAGGTT+TGG | - | chr7_1:2613620-2613639 | None:intergenic | 40.0% | |
| TACACAGATGACGAGCTTAA+TGG | + | chr7_1:2613810-2613829 | Msa1004910:intron | 40.0% | |
| GTAGAGCTCAACCAAAATAC+TGG | + | chr7_1:2614255-2614274 | Msa1004910:intron | 40.0% | |
| !! | ATTTTGGCAGCTTGAGGATA+TGG | + | chr7_1:2614426-2614445 | Msa1004910:intron | 40.0% |
| ! | TTTTGGCAGCTTGAGGATAT+GGG | + | chr7_1:2614427-2614446 | Msa1004910:intron | 40.0% |
| ! | TTGGTGATCCAATAGGTAGT+TGG | - | chr7_1:2614515-2614534 | None:intergenic | 40.0% |
| ! | AGGGGTTTTTGCTTCGGTTT+GGG | - | chr7_1:2609634-2609653 | None:intergenic | 45.0% |
| CCAAGTGAACGCTCAAGATA+CGG | + | chr7_1:2609745-2609764 | Msa1004910:CDS | 45.0% | |
| ! | GTAGTTACATGTGTCGGTGT+CGG | + | chr7_1:2609974-2609993 | Msa1004910:intron | 45.0% |
| AAGTGTCAGTGCTTTAGTGC+TGG | + | chr7_1:2610020-2610039 | Msa1004910:intron | 45.0% | |
| AGTGTCAGTGCTTTAGTGCT+GGG | + | chr7_1:2610021-2610040 | Msa1004910:intron | 45.0% | |
| GTTCGATACATGTCAGTGTC+TGG | - | chr7_1:2610216-2610235 | None:intergenic | 45.0% | |
| CACTGACATGTATCGAACAC+GGG | + | chr7_1:2610218-2610237 | Msa1004910:intron | 45.0% | |
| ! | CCTGTATTTGGCTCCTTGTT+TGG | - | chr7_1:2610577-2610596 | None:intergenic | 45.0% |
| CCAAACAAGGAGCCAAATAC+AGG | + | chr7_1:2610574-2610593 | Msa1004910:intron | 45.0% | |
| GCTTAAGGATGAGACTACCT+TGG | + | chr7_1:2610837-2610856 | Msa1004910:CDS | 45.0% | |
| GTTGGGGAAGCTAGAAAACA+AGG | + | chr7_1:2611004-2611023 | Msa1004910:intron | 45.0% | |
| AGGCAAAGAACTTGCAGGTT+GGG | - | chr7_1:2611988-2612007 | None:intergenic | 45.0% | |
| ! | CAAATTCTAGAAATGGGGGG+AGG | + | chr7_1:2612456-2612475 | Msa1004910:CDS | 45.0% |
| TATATGCAGCACGAAGAGCT+CGG | - | chr7_1:2612506-2612525 | None:intergenic | 45.0% | |
| !! | CCCATGTGAAGTATCGAGTA+TGG | + | chr7_1:2612591-2612610 | Msa1004910:intron | 45.0% |
| CCCATACTCGATACTTCACA+TGG | - | chr7_1:2612595-2612614 | None:intergenic | 45.0% | |
| CAATGAATAACGGTGAAGGC+AGG | + | chr7_1:2612816-2612835 | Msa1004910:intron | 45.0% | |
| TTGCTGCATCCACCAATGTT+GGG | + | chr7_1:2613107-2613126 | Msa1004910:CDS | 45.0% | |
| ! | GTTTTCTTCCTGCCCAACAT+TGG | - | chr7_1:2613122-2613141 | None:intergenic | 45.0% |
| !! | AAGTTCAGTGGGTTGGTGTT+AGG | - | chr7_1:2613190-2613209 | None:intergenic | 45.0% |
| AGTTCACAGTACACACCTGA+GGG | - | chr7_1:2613216-2613235 | None:intergenic | 45.0% | |
| GTTCCAAGCCTTGAGAACAA+TGG | + | chr7_1:2613461-2613480 | Msa1004910:intron | 45.0% | |
| TGCTTGCACCATTGTTCTCA+AGG | - | chr7_1:2613472-2613491 | None:intergenic | 45.0% | |
| AGCAAACCCTCAAATCTTGC+AGG | + | chr7_1:2613488-2613507 | Msa1004910:CDS | 45.0% | |
| GCTCTTGGATGAGTTCCATT+AGG | - | chr7_1:2613625-2613644 | None:intergenic | 45.0% | |
| AGAAGTCAGCTTGATGCTCT+TGG | - | chr7_1:2613640-2613659 | None:intergenic | 45.0% | |
| CGTCTTATAAATGAGCCTGG+AGG | + | chr7_1:2613662-2613681 | Msa1004910:CDS | 45.0% | |
| TAATCTTACTCTTCGCCTCC+AGG | - | chr7_1:2613680-2613699 | None:intergenic | 45.0% | |
| ACACCACAAGCAGATGCATA+GGG | + | chr7_1:2613876-2613895 | Msa1004910:intron | 45.0% | |
| TTGTATGACCAGGAACCTAG+AGG | + | chr7_1:2614023-2614042 | Msa1004910:intron | 45.0% | |
| TGTATGACCAGGAACCTAGA+GGG | + | chr7_1:2614024-2614043 | Msa1004910:intron | 45.0% | |
| !! | CTCTTCTGGGGTGATAGTAA+TGG | - | chr7_1:2614076-2614095 | None:intergenic | 45.0% |
| AAGAGAACGAGGCCATTCAA+CGG | + | chr7_1:2614091-2614110 | Msa1004910:CDS | 45.0% | |
| ! | TCACTAGCTTACCCGTTGAA+TGG | - | chr7_1:2614106-2614125 | None:intergenic | 45.0% |
| CTCAAGCTGCCAAAATGTCA+TGG | - | chr7_1:2614422-2614441 | None:intergenic | 45.0% | |
| !! | CATGACATTTTGGCAGCTTG+AGG | + | chr7_1:2614420-2614439 | Msa1004910:intron | 45.0% |
| TTTGGCAGCTTGAGGATATG+GGG | + | chr7_1:2614428-2614447 | Msa1004910:intron | 45.0% | |
| ACACCTCCAACACAAGATCT+CGG | - | chr7_1:2614459-2614478 | None:intergenic | 45.0% | |
| !!! | TTTCTTTTAATTTTAATTAT+TGG | + | chr7_1:2609822-2609841 | Msa1004910:intron | 5.0% |
| !!! | TTCTTTTAATTTTAATTATT+GGG | + | chr7_1:2609823-2609842 | Msa1004910:intron | 5.0% |
| !!! | GGGTTTTTGCTTCGGTTTGG+GGG | - | chr7_1:2609632-2609651 | None:intergenic | 50.0% |
| !! | GGGGTTTTTGCTTCGGTTTG+GGG | - | chr7_1:2609633-2609652 | None:intergenic | 50.0% |
| ! | GAGGGGTTTTTGCTTCGGTT+TGG | - | chr7_1:2609635-2609654 | None:intergenic | 50.0% |
| ! | TGGAGGAGGGGTTTTTGCTT+CGG | - | chr7_1:2609640-2609659 | None:intergenic | 50.0% |
| CCGTATCTTGAGCGTTCACT+TGG | - | chr7_1:2609748-2609767 | None:intergenic | 50.0% | |
| CGACGTATCAGTGTCGTATC+AGG | - | chr7_1:2609916-2609935 | None:intergenic | 50.0% | |
| GGGGTGATATGGCAGAATTG+TGG | + | chr7_1:2611277-2611296 | Msa1004910:intron | 50.0% | |
| GAGGCAAAGAACTTGCAGGT+TGG | - | chr7_1:2611989-2612008 | None:intergenic | 50.0% | |
| ! | TACTGTCCGACAGTTGATGC+AGG | - | chr7_1:2612035-2612054 | None:intergenic | 50.0% |
| GGAGAATCCAATCTTGCGCA+AGG | + | chr7_1:2612141-2612160 | Msa1004910:CDS | 50.0% | |
| TACAGGACCTTGCGCAAGAT+TGG | - | chr7_1:2612151-2612170 | None:intergenic | 50.0% | |
| ! | TACGTAGTGGGAGGAGTTAC+AGG | - | chr7_1:2612168-2612187 | None:intergenic | 50.0% |
| ! | TCAGATGCTTACGTAGTGGG+AGG | - | chr7_1:2612177-2612196 | None:intergenic | 50.0% |
| AGTGTGGTGCCTGACACATA+CGG | + | chr7_1:2612381-2612400 | Msa1004910:intron | 50.0% | |
| TAGAAATGGGGGGAGGAAGT+TGG | + | chr7_1:2612463-2612482 | Msa1004910:CDS | 50.0% | |
| AGAAATGGGGGGAGGAAGTT+GGG | + | chr7_1:2612464-2612483 | Msa1004910:CDS | 50.0% | |
| ! | TGCTGGAGCTTCAGCTTGTT+CGG | - | chr7_1:2613086-2613105 | None:intergenic | 50.0% |
| GTTGCTGCATCCACCAATGT+TGG | + | chr7_1:2613106-2613125 | Msa1004910:CDS | 50.0% | |
| TTCTTCCTGCCCAACATTGG+TGG | - | chr7_1:2613119-2613138 | None:intergenic | 50.0% | |
| AGGGAACAAGTTCAGTGGGT+TGG | - | chr7_1:2613197-2613216 | None:intergenic | 50.0% | |
| CCTGAGGGAACAAGTTCAGT+GGG | - | chr7_1:2613201-2613220 | None:intergenic | 50.0% | |
| ACCTGAGGGAACAAGTTCAG+TGG | - | chr7_1:2613202-2613221 | None:intergenic | 50.0% | |
| CAGTTCACAGTACACACCTG+AGG | - | chr7_1:2613217-2613236 | None:intergenic | 50.0% | |
| GCACCATTGTTCTCAAGGCT+TGG | - | chr7_1:2613467-2613486 | None:intergenic | 50.0% | |
| CACACCACAAGCAGATGCAT+AGG | + | chr7_1:2613875-2613894 | Msa1004910:intron | 50.0% | |
| TGACCCTATGCATCTGCTTG+TGG | - | chr7_1:2613882-2613901 | None:intergenic | 50.0% | |
| AGGAACCTAGAGGGACAGTT+GGG | + | chr7_1:2614033-2614052 | Msa1004910:intron | 50.0% | |
| GGGGTGATAGTAATGGTCTG+AGG | - | chr7_1:2614069-2614088 | None:intergenic | 50.0% | |
| TATCACCCCAGAAGAGAACG+AGG | + | chr7_1:2614080-2614099 | Msa1004910:CDS | 50.0% | |
| AATGGCCTCGTTCTCTTCTG+GGG | - | chr7_1:2614088-2614107 | None:intergenic | 50.0% | |
| GAATGGCCTCGTTCTCTTCT+GGG | - | chr7_1:2614089-2614108 | None:intergenic | 50.0% | |
| TGAATGGCCTCGTTCTCTTC+TGG | - | chr7_1:2614090-2614109 | None:intergenic | 50.0% | |
| AGAGAACGAGGCCATTCAAC+GGG | + | chr7_1:2614092-2614111 | Msa1004910:CDS | 50.0% | |
| GTTCGACCGAGATCTTGTGT+TGG | + | chr7_1:2614450-2614469 | Msa1004910:CDS | 50.0% | |
| TCTGGCAGCCAACTACCTAT+TGG | + | chr7_1:2614504-2614523 | Msa1004910:CDS | 50.0% | |
| AGAAATCACCACCGCGCACA+CGG | - | chr7_1:2609663-2609682 | None:intergenic | 55.0% | |
| GCGCGGTGGTGATTTCTGAT+CGG | + | chr7_1:2609666-2609685 | Msa1004910:five_prime_UTR | 55.0% | |
| GGTGTGTCCGACAATAGACG+TGG | - | chr7_1:2610055-2610074 | None:intergenic | 55.0% | |
| !! | AGGCTGAGGTGTTGACGAAG+GGG | - | chr7_1:2612012-2612031 | None:intergenic | 55.0% |
| !! | GAGGCTGAGGTGTTGACGAA+GGG | - | chr7_1:2612013-2612032 | None:intergenic | 55.0% |
| ! | ACAGTTGATGCAGGAGGCTG+AGG | - | chr7_1:2612026-2612045 | None:intergenic | 55.0% |
| CAGCCTCCTGCATCAACTGT+CGG | + | chr7_1:2612026-2612045 | Msa1004910:CDS | 55.0% | |
| ! | TGTCCGACAGTTGATGCAGG+AGG | - | chr7_1:2612032-2612051 | None:intergenic | 55.0% |
| TCAGCTTGGCCGTATGTGTC+AGG | - | chr7_1:2612393-2612412 | None:intergenic | 55.0% | |
| ! | CTGGAGCTTCAGCTTGTTCG+GGG | - | chr7_1:2613084-2613103 | None:intergenic | 55.0% |
| ! | GCTGGAGCTTCAGCTTGTTC+GGG | - | chr7_1:2613085-2613104 | None:intergenic | 55.0% |
| ! | TTGGTGGATGCAGCAACTGC+TGG | - | chr7_1:2613103-2613122 | None:intergenic | 55.0% |
| TGCATCCACCAATGTTGGGC+AGG | + | chr7_1:2613111-2613130 | Msa1004910:CDS | 55.0% | |
| AACAGCAGGCACAGCTGGTT+GGG | - | chr7_1:2613164-2613183 | None:intergenic | 55.0% | |
| AACCAGCTGTGCCTGCTGTT+GGG | + | chr7_1:2613164-2613183 | Msa1004910:CDS | 55.0% | |
| !! | TTGGTGTTAGGCCCAACAGC+AGG | - | chr7_1:2613178-2613197 | None:intergenic | 55.0% |
| ! | CCCACTGAACTTGTTCCCTC+AGG | + | chr7_1:2613198-2613217 | Msa1004910:CDS | 55.0% |
| CAGCCCATGCTTCAGGAACT+AGG | + | chr7_1:2613584-2613603 | Msa1004910:intron | 55.0% | |
| CAACTGTCCCTCTAGGTTCC+TGG | - | chr7_1:2614034-2614053 | None:intergenic | 55.0% | |
| CAGGAACCTAGAGGGACAGT+TGG | + | chr7_1:2614032-2614051 | Msa1004910:intron | 55.0% | |
| AAGCACCCAACTGTCCCTCT+AGG | - | chr7_1:2614041-2614060 | None:intergenic | 55.0% | |
| AGAGGGACAGTTGGGTGCTT+TGG | + | chr7_1:2614041-2614060 | Msa1004910:CDS | 55.0% | |
| CGACCGAGATCTTGTGTTGG+AGG | + | chr7_1:2614453-2614472 | Msa1004910:CDS | 55.0% | |
| GGGGGAGGCAAAGAACTTGC+AGG | - | chr7_1:2611993-2612012 | None:intergenic | 60.0% | |
| !! | TGAGGTGTTGACGAAGGGGG+AGG | - | chr7_1:2612008-2612027 | None:intergenic | 60.0% |
| !! | GGCTGAGGTGTTGACGAAGG+GGG | - | chr7_1:2612011-2612030 | None:intergenic | 60.0% |
| !! | GGAGGCTGAGGTGTTGACGA+AGG | - | chr7_1:2612014-2612033 | None:intergenic | 60.0% |
| TGGGGGGAGGAAGTTGGGAT+CGG | + | chr7_1:2612469-2612488 | Msa1004910:CDS | 60.0% | |
| CAACAGCAGGCACAGCTGGT+TGG | - | chr7_1:2613165-2613184 | None:intergenic | 60.0% | |
| CAACCAGCTGTGCCTGCTGT+TGG | + | chr7_1:2613163-2613182 | Msa1004910:CDS | 60.0% | |
| AATCACCACCGCGCACACGG+TGG | - | chr7_1:2609660-2609679 | None:intergenic | 65.0% | |
| TGGGGCAGCTGAAGCAGCAG+AGG | - | chr7_1:2611658-2611677 | None:intergenic | 65.0% | |
| ! | TGCTGCTTCAGCTGCCCCAC+CGG | + | chr7_1:2611659-2611678 | Msa1004910:CDS | 65.0% |
| GGGGGGAGGAAGTTGGGATC+GGG | + | chr7_1:2612470-2612489 | Msa1004910:CDS | 65.0% | |
| GGGCTGGAGGCTGAGCTGAA+GGG | - | chr7_1:2613144-2613163 | None:intergenic | 65.0% | |
| ! | TGGGCTGGAGGCTGAGCTGA+AGG | - | chr7_1:2613145-2613164 | None:intergenic | 65.0% |
| ACCGCGCACACGGTGGAGGA+GGG | - | chr7_1:2609653-2609672 | None:intergenic | 70.0% | |
| ! | GGCACAGCTGGTTGGGCTGG+AGG | - | chr7_1:2613157-2613176 | None:intergenic | 70.0% |
| GCAGGCACAGCTGGTTGGGC+TGG | - | chr7_1:2613160-2613179 | None:intergenic | 70.0% | |
| GGCCCAACAGCAGGCACAGC+TGG | - | chr7_1:2613169-2613188 | None:intergenic | 70.0% | |
| CCGCGCACACGGTGGAGGAG+GGG | - | chr7_1:2609652-2609671 | None:intergenic | 75.0% | |
| CCCCTCCTCCACCGTGTGCG+CGG | + | chr7_1:2609649-2609668 | Msa1004910:five_prime_UTR | 75.0% | |
| CACCGCGCACACGGTGGAGG+AGG | - | chr7_1:2609654-2609673 | None:intergenic | 75.0% | |
| CTCCTCCACCGTGTGCGCGG+TGG | + | chr7_1:2609652-2609671 | Msa1004910:five_prime_UTR | 75.0% | |
| CACCACCGCGCACACGGTGG+AGG | - | chr7_1:2609657-2609676 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 2609581 | 2614843 | 2609581 | ID=Msa1004910;Name=Msa1004910 |
| chr7_1 | mRNA | 2609581 | 2614843 | 2609581 | ID=Msa1004910-mRNA-1;Parent=Msa1004910;Name=Msa1004910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|1|1|1|1|1|12|291|375 |
| chr7_1 | exon | 2609581 | 2609766 | 2609581 | ID=Msa1004910-mRNA-1:exon:1065;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2610748 | 2610909 | 2610748 | ID=Msa1004910-mRNA-1:exon:1066;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2611633 | 2611680 | 2611633 | ID=Msa1004910-mRNA-1:exon:1067;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2611981 | 2612051 | 2611981 | ID=Msa1004910-mRNA-1:exon:1068;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2612140 | 2612184 | 2612140 | ID=Msa1004910-mRNA-1:exon:1069;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2612383 | 2612560 | 2612383 | ID=Msa1004910-mRNA-1:exon:1070;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2613076 | 2613219 | 2613076 | ID=Msa1004910-mRNA-1:exon:1071;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2613309 | 2613374 | 2613309 | ID=Msa1004910-mRNA-1:exon:1072;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2613462 | 2613509 | 2613462 | ID=Msa1004910-mRNA-1:exon:1073;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2613587 | 2613690 | 2613587 | ID=Msa1004910-mRNA-1:exon:1074;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2614035 | 2614113 | 2614035 | ID=Msa1004910-mRNA-1:exon:1075;Parent=Msa1004910-mRNA-1 |
| chr7_1 | exon | 2614436 | 2614843 | 2614436 | ID=Msa1004910-mRNA-1:exon:1076;Parent=Msa1004910-mRNA-1 |
| chr7_1 | five_prime_UTR | 2609581 | 2609700 | 2609581 | ID=Msa1004910-mRNA-1:five_prime_utr;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2609701 | 2609766 | 2609701 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2610748 | 2610909 | 2610748 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2611633 | 2611680 | 2611633 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2611981 | 2612051 | 2611981 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2612140 | 2612184 | 2612140 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2612383 | 2612560 | 2612383 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2613076 | 2613219 | 2613076 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2613309 | 2613374 | 2613309 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2613462 | 2613509 | 2613462 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2613587 | 2613690 | 2613587 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2614035 | 2614113 | 2614035 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | CDS | 2614436 | 2614552 | 2614436 | ID=Msa1004910-mRNA-1:cds;Parent=Msa1004910-mRNA-1 |
| chr7_1 | three_prime_UTR | 2614553 | 2614843 | 2614553 | ID=Msa1004910-mRNA-1:three_prime_utr;Parent=Msa1004910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
