AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070740 MtrunA17_Chr1g0176251 98.611 216 3 0 6 221 177 392 5.65e-151 425
Msa0070740 MtrunA17_Chr4g0072191 34.239 184 106 4 46 221 234 410 6.31e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070740 AT3G11945.1 81.193 218 41 0 4 221 169 386 1.01e-124 358
Msa0070740 AT3G11945.2 81.193 218 41 0 4 221 176 393 1.88e-124 358
Msa0070740 AT2G18950.1 34.637 179 112 3 46 221 216 392 2.80e-27 107
Msa0070740 AT2G18950.2 35.922 103 63 2 46 145 216 318 1.91e-14 71.2

Find 49 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACCTTTGCTACAAAATT+AGG 0.197774 1_2:+41480650 Msa0070740:CDS
GGTGTTGTTGACAGGCTTTC+AGG 0.223817 1_2:+41480834 Msa0070740:intron
AACATTTCTTTCCTTGGTTC+TGG 0.229462 1_2:+41480680 Msa0070740:CDS
CCAGATTTCATAATGTTTCA+TGG 0.298266 1_2:+41483095 Msa0070740:three_prime_UTR
CATAAAATAGCACATGTAAA+TGG 0.313227 1_2:-41483154 None:intergenic
AGTCCAATCTGCATGGTTCT+TGG 0.313282 1_2:+41479799 Msa0070740:CDS
CATATAAATTGCTGCCAATA+TGG 0.320084 1_2:-41480729 None:intergenic
GTTATATTCTTTGCAGCAGC+TGG 0.338944 1_2:+41479821 Msa0070740:CDS
AATAGATAGTACCAAGAAAA+AGG 0.341669 1_2:-41479901 None:intergenic
CCATGAAACATTATGAAATC+TGG 0.365199 1_2:-41483095 None:intergenic
GTTCGGAACATTTCTTTCCT+TGG 0.385731 1_2:+41480674 Msa0070740:CDS
GAACTATGTTGTTACCATAT+TGG 0.406125 1_2:+41480715 Msa0070740:CDS
ATGTTGCAGGAAGCAATATC+AGG 0.410158 1_2:+41482765 Msa0070740:intron
TTGACTGTTGGATTGAACTT+TGG 0.411439 1_2:+41479848 Msa0070740:CDS
ATAATAAGAAATGCTGCAAC+AGG 0.417997 1_2:-41479953 None:intergenic
TTGCTACAAAATTAGGAGTT+CGG 0.428806 1_2:+41480657 Msa0070740:CDS
CTACGATCTCCTTCAACATC+TGG 0.428942 1_2:-41480459 None:intergenic
GCCGATCAATAAGACAAATT+CGG 0.431898 1_2:+41482914 Msa0070740:three_prime_UTR
CAGGATTCTATCGATTCATA+TGG 0.434066 1_2:+41482784 Msa0070740:CDS
AGTTCAATCCAACAGTCAAT+AGG 0.439378 1_2:-41479844 None:intergenic
CATGTAAATGGCACGCATAA+AGG 0.465771 1_2:-41483142 None:intergenic
GTTGACAGGCTTTCAGGAGA+TGG 0.469985 1_2:+41480840 Msa0070740:intron
TCTAGCAAACCGTGCTACCT+TGG 0.477091 1_2:+41482844 Msa0070740:exon
ACTGCTACATTTCTGTATGC+AGG 0.480891 1_2:-41482879 None:intergenic
AAAGATCTTCCAGATGTTGA+AGG 0.481104 1_2:+41480450 Msa0070740:CDS
AGCATTTCTTATTATTGCTA+CGG 0.484068 1_2:+41479961 Msa0070740:CDS
TCTATTCCGTTCCTCCGCTT+AGG 0.484634 1_2:+41479918 Msa0070740:CDS
TCCGAATTTGTCTTATTGAT+CGG 0.485458 1_2:-41482915 None:intergenic
GGATCCTAGTGCTTTAAAGA+TGG 0.491455 1_2:+41482935 Msa0070740:three_prime_UTR
TAACCAAGAACCATGCAGAT+TGG 0.498672 1_2:-41479802 None:intergenic
TGCTTCAAGCTTGATTTACC+AGG 0.498689 1_2:+41480889 Msa0070740:CDS
CGAACCATCTTTAAAGCACT+AGG 0.509656 1_2:-41482939 None:intergenic
TTCAATATGCAGTCTTCTCA+AGG 0.521230 1_2:+41477405 None:intergenic
GCAGCTGGCCTATTGACTGT+TGG 0.521951 1_2:+41479836 Msa0070740:CDS
GGCAGCAATTTATATGCCAC+AGG 0.528952 1_2:+41480736 Msa0070740:CDS
TACGCCACTAGAGCTGCTCT+TGG 0.549187 1_2:+41480130 Msa0070740:CDS
TTTCATCCTAAGCGGAGGAA+CGG 0.550726 1_2:-41479924 None:intergenic
AAGTCCAAGAGCAGCTCTAG+TGG 0.553924 1_2:-41480134 None:intergenic
ATCTACCTGCAGCTCTCCTG+TGG 0.565966 1_2:+41480377 Msa0070740:intron
ATCTTTCAGTCCAATCTGCA+TGG 0.572018 1_2:+41479792 Msa0070740:CDS
GAAGCAAATATTGCATGAGC+TGG 0.584720 1_2:-41480872 None:intergenic
GCCGTTGTATAGAATTCTCA+TGG 0.586685 1_2:-41483073 None:intergenic
AGCACGGTTTGCTAGATGAA+AGG 0.593888 1_2:-41482837 None:intergenic
TCAGCAAAATTCCAGAACCA+AGG 0.633793 1_2:-41480691 None:intergenic
GCCATGAGAATTCTATACAA+CGG 0.654385 1_2:+41483072 Msa0070740:three_prime_UTR
AAGCGTTTCATCCTAAGCGG+AGG 0.662812 1_2:-41479929 None:intergenic
CAGATGTTGAAGGAGATCGT+AGG 0.666387 1_2:+41480460 Msa0070740:CDS
AAGTGACTTATGCAGGTACG+AGG 0.680664 1_2:+41480082 Msa0070740:intron
GGAAAGCGTTTCATCCTAAG+CGG 0.694499 1_2:-41479932 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATTTGGTTTTAAATT+CGG + chr1_2:41478036-41478055 Msa0070740:intron 10.0%
!!! AACTTATTTTGTTTTAAATT+TGG + chr1_2:41479196-41479215 Msa0070740:intron 10.0%
!!! TATTTAATGTTATTTTTCAA+TGG - chr1_2:41482157-41482176 None:intergenic 10.0%
!!! AGTATTAACAATTTTTTTAA+TGG + chr1_2:41483000-41483019 Msa0070740:three_prime_UTR 10.0%
!!! TGATATTTGGTTTTAATATT+TGG + chr1_2:41478024-41478043 Msa0070740:intron 15.0%
!!! AAACAAGATTTTTGTTTATA+TGG + chr1_2:41478816-41478835 Msa0070740:intron 15.0%
!!! TACAATTTTGATAAATATGA+AGG + chr1_2:41478989-41479008 Msa0070740:intron 15.0%
!!! AATATCATGTTTTAAATCAA+GGG - chr1_2:41479025-41479044 None:intergenic 15.0%
!!! AAATATCATGTTTTAAATCA+AGG - chr1_2:41479026-41479045 None:intergenic 15.0%
!!! AAATGCTAAAATATCATTTT+CGG - chr1_2:41479278-41479297 None:intergenic 15.0%
!!! AAATGATATTTTAGCATTTA+TGG + chr1_2:41479279-41479298 Msa0070740:intron 15.0%
!! TGAAATATAAGAATAACTTA+GGG - chr1_2:41479730-41479749 None:intergenic 15.0%
!! ATGAAATATAAGAATAACTT+AGG - chr1_2:41479731-41479750 None:intergenic 15.0%
!!! TATTCTTATATTTCATTTTC+AGG + chr1_2:41479735-41479754 Msa0070740:intron 15.0%
!!! ATTCTTATATTTCATTTTCA+GGG + chr1_2:41479736-41479755 Msa0070740:intron 15.0%
!! ATAACAGAAAATGATTAATA+AGG - chr1_2:41480985-41481004 None:intergenic 15.0%
!! TCTGTTATAAAATATTTGTT+CGG + chr1_2:41480997-41481016 Msa0070740:intron 15.0%
!!! GATTTATTTTCTTATATTTC+AGG + chr1_2:41481206-41481225 Msa0070740:intron 15.0%
!! ATCAATGATATAATCAATAA+GGG + chr1_2:41481655-41481674 Msa0070740:intron 15.0%
!! GAATGATAAAAATAAATCAA+TGG - chr1_2:41482231-41482250 None:intergenic 15.0%
!!! ATTTTTTATCGATTGTCTTT+TGG + chr1_2:41477571-41477590 Msa0070740:intron 20.0%
!!! TTTTTTATCGATTGTCTTTT+GGG + chr1_2:41477572-41477591 Msa0070740:intron 20.0%
!!! AAATGAGATTTTTGCTTTTA+TGG + chr1_2:41477655-41477674 Msa0070740:intron 20.0%
!! ACATAATATTTGAACCTATT+TGG + chr1_2:41477735-41477754 Msa0070740:intron 20.0%
!! ATTCGGTAAATATAAAGTAT+TGG + chr1_2:41477764-41477783 Msa0070740:intron 20.0%
!!! TTCGGTAAATATAAAGTATT+GGG + chr1_2:41477765-41477784 Msa0070740:intron 20.0%
!! ATTCGGTAAAATGAAAATAT+TGG + chr1_2:41478350-41478369 Msa0070740:intron 20.0%
!! ACATATCATGTTTCATATTA+AGG - chr1_2:41478589-41478608 None:intergenic 20.0%
!! AATATTATGTTATGCATCAA+AGG - chr1_2:41478737-41478756 None:intergenic 20.0%
!! ACATAATATTTGAACCTATT+TGG + chr1_2:41477735-41477754 Msa0070740:intron 20.0%
!! TATCAAAATTGTAACCAAAT+AGG - chr1_2:41478982-41479001 None:intergenic 20.0%
!!! AAATGAGATTTTAGCTTATA+TGG + chr1_2:41479104-41479123 Msa0070740:intron 20.0%
!! AATATCATGTTTCGTAAAAA+GGG - chr1_2:41479174-41479193 None:intergenic 20.0%
!! AAATATCATGTTTCGTAAAA+AGG - chr1_2:41479175-41479194 None:intergenic 20.0%
!! TACAAAAATGATAAATGAGA+AGG + chr1_2:41479303-41479322 Msa0070740:intron 20.0%
!! TGTATCATGTATATGTAATA+TGG + chr1_2:41480593-41480612 Msa0070740:intron 20.0%
!! TGCATGTAATAATTAATTAC+AGG + chr1_2:41480618-41480637 Msa0070740:intron 20.0%
!!! TAAGGTTTATTTTCAAATGT+AGG - chr1_2:41480804-41480823 None:intergenic 20.0%
!!! ATTTTTGAAAAATAAAGACG+TGG - chr1_2:41481151-41481170 None:intergenic 20.0%
!! AGAAAAAGCAAATTATACAA+AGG + chr1_2:41481239-41481258 Msa0070740:CDS 20.0%
!!! ATATGTTATCATCTTTTGTA+TGG + chr1_2:41481265-41481284 Msa0070740:intron 20.0%
!! TAAAACAAACAGAAGAAAAA+TGG - chr1_2:41481507-41481526 None:intergenic 20.0%
!! ATTGATTATATCATTGATGT+GGG - chr1_2:41481653-41481672 None:intergenic 20.0%
!!! TATTGATTATATCATTGATG+TGG - chr1_2:41481654-41481673 None:intergenic 20.0%
!! CATCAATGATATAATCAATA+AGG + chr1_2:41481654-41481673 Msa0070740:intron 20.0%
!! TCAATGATATAATCAATAAG+GGG + chr1_2:41481656-41481675 Msa0070740:intron 20.0%
!! ATTGATTATATCATTGAAGA+GGG - chr1_2:41481851-41481870 None:intergenic 20.0%
!!! TATTGATTATATCATTGAAG+AGG - chr1_2:41481852-41481871 None:intergenic 20.0%
!!! ATTCACAAAATTCATACTTT+TGG + chr1_2:41482247-41482266 Msa0070740:intron 20.0%
!! ATTAATTAGAAGTAAGACTT+GGG - chr1_2:41482338-41482357 None:intergenic 20.0%
!! AATTAATTAGAAGTAAGACT+TGG - chr1_2:41482339-41482358 None:intergenic 20.0%
! CTCGAAAACTAAAAAACAAA+TGG - chr1_2:41477499-41477518 None:intergenic 25.0%
! TGGTTACATGTTTGATAAAT+TGG + chr1_2:41477675-41477694 Msa0070740:intron 25.0%
! AATATTATGTTACGCATCAA+GGG - chr1_2:41477725-41477744 None:intergenic 25.0%
! AAATATTATGTTACGCATCA+AGG - chr1_2:41477726-41477745 None:intergenic 25.0%
! AACCTATTTGGTTGTAAATT+CGG + chr1_2:41477747-41477766 Msa0070740:intron 25.0%
!! AAATGCGATTTTATCCTTTA+TGG + chr1_2:41477805-41477824 Msa0070740:intron 25.0%
! TATCAAACTTGTAACCATAA+AGG - chr1_2:41477822-41477841 None:intergenic 25.0%
! ATGGTTACAAGTTTGATAAA+TGG + chr1_2:41477824-41477843 Msa0070740:intron 25.0%
! TGGTTACAAGTTTGATAAAT+GGG + chr1_2:41477825-41477844 Msa0070740:intron 25.0%
!!! CACATCATGTTTTAAATCAA+AGG - chr1_2:41477865-41477884 None:intergenic 25.0%
!!! AACCTATTTGGTTTTGTATT+CGG + chr1_2:41477885-41477904 Msa0070740:intron 25.0%
! TACAAGTTTGATGAATTTGA+AGG + chr1_2:41477966-41477985 Msa0070740:intron 25.0%
!!! AAACGAGATTTTAGCTTATA+TGG + chr1_2:41478093-41478112 Msa0070740:intron 25.0%
!! AACCTATTTGGTTTCATATT+CGG + chr1_2:41478185-41478204 Msa0070740:intron 25.0%
!!! AACCTATTTGGTTTTGTATT+CGG + chr1_2:41477885-41477904 Msa0070740:intron 25.0%
!!! AACCTATTTGGTTTTGTATT+CGG + chr1_2:41477885-41477904 Msa0070740:intron 25.0%
!! ATTCGGTAAAATGAAAGTAT+TGG + chr1_2:41478489-41478508 Msa0070740:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG + chr1_2:41478528-41478547 Msa0070740:intron 25.0%
! TATCAAACTTCTAACCATAT+AGG - chr1_2:41478545-41478564 None:intergenic 25.0%
! TTCATATTAAGGAACATCAA+GGG - chr1_2:41478578-41478597 None:intergenic 25.0%
! TTTCATATTAAGGAACATCA+AGG - chr1_2:41478579-41478598 None:intergenic 25.0%
!!! AACCTATTTGGTTTTGTATT+CGG + chr1_2:41477885-41477904 Msa0070740:intron 25.0%
!! ATTCGGTAAAATGAAAGTAT+TGG + chr1_2:41478489-41478508 Msa0070740:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG + chr1_2:41478528-41478547 Msa0070740:intron 25.0%
!! TATCAAGCTTTTAACCATAT+AGG - chr1_2:41478684-41478703 None:intergenic 25.0%
!!! AACCTATTTGGCTTTAAATT+TGG + chr1_2:41478759-41478778 Msa0070740:intron 25.0%
!! TACCAAATTTAAAGCCAAAT+AGG - chr1_2:41478764-41478783 None:intergenic 25.0%
!!! AAATCTTGTTTTTACGACAA+AGG - chr1_2:41478807-41478826 None:intergenic 25.0%
! TACAAGTTTGATAAATACGA+AGG + chr1_2:41478840-41478859 Msa0070740:intron 25.0%
!! ACATGATATTTGAAGCTATT+TGG + chr1_2:41479035-41479054 Msa0070740:intron 25.0%
!!! AAGCTATTTGGTTTTCAATT+CGG + chr1_2:41479047-41479066 Msa0070740:intron 25.0%
! ATGGTTACAAGTTTGATAAA+TGG + chr1_2:41477824-41477843 Msa0070740:intron 25.0%
! TGGTTACAAGTTTGATAAAT+GGG + chr1_2:41477825-41477844 Msa0070740:intron 25.0%
! TCAAATAAGTCAATTCAAAC+AGG + chr1_2:41479704-41479723 Msa0070740:intron 25.0%
! GAGTAAAGCGAAAAAATAAA+AGG - chr1_2:41479875-41479894 None:intergenic 25.0%
! AATAGATAGTACCAAGAAAA+AGG - chr1_2:41479904-41479923 None:intergenic 25.0%
! AGCATTTCTTATTATTGCTA+CGG + chr1_2:41479961-41479980 Msa0070740:CDS 25.0%
! AATAAACCTTATGTAAGTTG+TGG + chr1_2:41480813-41480832 Msa0070740:intron 25.0%
! AATATAGAACTCTCAAGTAT+TGG - chr1_2:41480934-41480953 None:intergenic 25.0%
! TAAAATATTTGTTCGGAGAA+TGG + chr1_2:41481004-41481023 Msa0070740:intron 25.0%
! TGGAACTTCTTAGTATAATT+AGG + chr1_2:41481052-41481071 Msa0070740:intron 25.0%
!!! TGTTTTGAAAACTCAAAAGT+TGG + chr1_2:41481312-41481331 Msa0070740:intron 25.0%
! TGTTGTATATCATATGTAGT+CGG - chr1_2:41481365-41481384 None:intergenic 25.0%
! ACATATGATATACAACAGTT+AGG + chr1_2:41481368-41481387 Msa0070740:intron 25.0%
! AGAGAGAAAATTTAGTCAAA+AGG + chr1_2:41481453-41481472 Msa0070740:intron 25.0%
! TCTCATAAACTAAAACAAAC+AGG + chr1_2:41481621-41481640 Msa0070740:intron 25.0%
! CAATGATATAATCAATAAGG+GGG + chr1_2:41481657-41481676 Msa0070740:intron 25.0%
! TAAAAGAGAGCTTATGAAAA+CGG - chr1_2:41482625-41482644 None:intergenic 25.0%
ATGAATAAAGAGAGATGTTG+CGG - chr1_2:41477470-41477489 None:intergenic 30.0%
! AAGCAAAAATCTCATTTTCG+CGG - chr1_2:41477652-41477671 None:intergenic 30.0%
TACCGAATTTACAACCAAAT+AGG - chr1_2:41477752-41477771 None:intergenic 30.0%
TACAAGTTTGATAAATGGGA+AGG + chr1_2:41477829-41477848 Msa0070740:intron 30.0%
AAACATGATGTGAACCTATT+TGG + chr1_2:41477873-41477892 Msa0070740:intron 30.0%
AACCGAATACAAAACCAAAT+AGG - chr1_2:41477890-41477909 None:intergenic 30.0%
ATTCGGTTAAATCCAAGTAT+TGG + chr1_2:41477902-41477921 Msa0070740:intron 30.0%
!! AAATGAGATTTTGGCCTATA+TGG + chr1_2:41477942-41477961 Msa0070740:intron 30.0%
CATCAAACTTGTAACCATAT+AGG - chr1_2:41477959-41477978 None:intergenic 30.0%
AATATCATGTTTCGCATCAA+AGG - chr1_2:41478011-41478030 None:intergenic 30.0%
TTGATGCGAAACATGATATT+TGG + chr1_2:41478011-41478030 Msa0070740:intron 30.0%
ACATGATATGTGAACCTATT+TGG + chr1_2:41478173-41478192 Msa0070740:intron 30.0%
TACCGAATATGAAACCAAAT+AGG - chr1_2:41478190-41478209 None:intergenic 30.0%
! ATTCGGTAAAACGAAAGTAT+TGG + chr1_2:41478202-41478221 Msa0070740:intron 30.0%
ATGCCTACAAGTTTGATAAA+TGG + chr1_2:41478261-41478280 Msa0070740:intron 30.0%
TGCCTACAAGTTTGATAAAT+GGG + chr1_2:41478262-41478281 Msa0070740:intron 30.0%
TTCCCATTTATCAAACTTGT+AGG - chr1_2:41477830-41477849 None:intergenic 30.0%
ACATGATATGTGAACCTATT+TGG + chr1_2:41478173-41478192 Msa0070740:intron 30.0%
TACCGAATACAAAACCAAAT+AGG - chr1_2:41478338-41478357 None:intergenic 30.0%
! AAATCTCATTTTCGTGACAA+GGG - chr1_2:41478381-41478400 None:intergenic 30.0%
! AAAATCTCATTTTCGTGACA+AGG - chr1_2:41478382-41478401 None:intergenic 30.0%
! TTGTCACGAAAATGAGATTT+TGG + chr1_2:41478381-41478400 Msa0070740:intron 30.0%
ACATGATATGAGAACCTATT+TGG + chr1_2:41478460-41478479 Msa0070740:intron 30.0%
TACCGAATACAAAACCAAAT+AGG - chr1_2:41478338-41478357 None:intergenic 30.0%
ACATGATATGTGAACCTATT+TGG + chr1_2:41478173-41478192 Msa0070740:intron 30.0%
TACCGAATACAAAACCAAAT+AGG - chr1_2:41478338-41478357 None:intergenic 30.0%
!! AAAATCTCATTTTTGCGACA+AGG - chr1_2:41478659-41478678 None:intergenic 30.0%
! ACATGATATGTGAACCTTTT+TGG + chr1_2:41478896-41478915 Msa0070740:intron 30.0%
!!! AACCTTTTTGGTTTCGTATT+TGG + chr1_2:41478908-41478927 Msa0070740:intron 30.0%
TACCAAATACGAAACCAAAA+AGG - chr1_2:41478913-41478932 None:intergenic 30.0%
! AAATCTCATTTTCGCAACAA+GGG - chr1_2:41479095-41479114 None:intergenic 30.0%
! AAAATCTCATTTTCGCAACA+AGG - chr1_2:41479096-41479115 None:intergenic 30.0%
AAAATCATGTTTCGCATCAA+GGG - chr1_2:41479349-41479368 None:intergenic 30.0%
AAAAATCATGTTTCGCATCA+AGG - chr1_2:41479350-41479369 None:intergenic 30.0%
!! ATTTTTAAGCCGAGTTTGTT+TGG + chr1_2:41479364-41479383 Msa0070740:intron 30.0%
!!! ATTTTTTCGCTTTACTCCTT+CGG + chr1_2:41479878-41479897 Msa0070740:CDS 30.0%
ATAATAAGAAATGCTGCAAC+AGG - chr1_2:41479956-41479975 None:intergenic 30.0%
! ACAGTTAGTAAAGTACCATT+TGG + chr1_2:41480042-41480061 Msa0070740:intron 30.0%
AAAGTTGTGATAAAAACCAC+AGG - chr1_2:41480396-41480415 None:intergenic 30.0%
! TTTCGTAACATTTTTCGCAT+TGG + chr1_2:41480413-41480432 Msa0070740:CDS 30.0%
! TTTGGAATCATGTTGCATTA+AGG + chr1_2:41480488-41480507 Msa0070740:intron 30.0%
TTGGAATCATGTTGCATTAA+GGG + chr1_2:41480489-41480508 Msa0070740:intron 30.0%
ATACACCAACAAATAAAGAG+TGG - chr1_2:41480578-41480597 None:intergenic 30.0%
! AACTCCTAATTTTGTAGCAA+AGG - chr1_2:41480657-41480676 None:intergenic 30.0%
TTGCTACAAAATTAGGAGTT+CGG + chr1_2:41480657-41480676 Msa0070740:CDS 30.0%
GAACTATGTTGTTACCATAT+TGG + chr1_2:41480715-41480734 Msa0070740:CDS 30.0%
CATATAAATTGCTGCCAATA+TGG - chr1_2:41480732-41480751 None:intergenic 30.0%
GTTACAAGAATCGAAAATCA+AGG - chr1_2:41481339-41481358 None:intergenic 30.0%
GTTGTATATCATATGTAGTC+GGG - chr1_2:41481364-41481383 None:intergenic 30.0%
! TTCTGGTAGTTACATCTTTT+AGG + chr1_2:41481410-41481429 Msa0070740:intron 30.0%
! TCTGGTAGTTACATCTTTTA+GGG + chr1_2:41481411-41481430 Msa0070740:intron 30.0%
GAGAAAATTTAGTCAAAAGG+AGG + chr1_2:41481456-41481475 Msa0070740:intron 30.0%
!!! CTTCTGTTTGTTTTAGATTC+TGG + chr1_2:41481512-41481531 Msa0070740:intron 30.0%
! CCTTTAGTAAAAAGTGCATT+GGG - chr1_2:41481564-41481583 None:intergenic 30.0%
! TCCTTTAGTAAAAAGTGCAT+TGG - chr1_2:41481565-41481584 None:intergenic 30.0%
GAAGCTGTACTTAATTCTAT+TGG + chr1_2:41481583-41481602 Msa0070740:intron 30.0%
CTTGTGTAAAAAACAAGGTA+AGG - chr1_2:41481757-41481776 None:intergenic 30.0%
!!! TACCTTGTTTTTTACACAAG+AGG + chr1_2:41481757-41481776 Msa0070740:intron 30.0%
AACCTCTTGTGTAAAAAACA+AGG - chr1_2:41481762-41481781 None:intergenic 30.0%
! AATGTAAGTGTTGTAGATAG+CGG - chr1_2:41482080-41482099 None:intergenic 30.0%
! ATATTGATTAGTTCAAGTCG+AGG + chr1_2:41482174-41482193 Msa0070740:intron 30.0%
AAGATAAAACAAAGTGAAGC+TGG + chr1_2:41482518-41482537 Msa0070740:intron 30.0%
! TTTTCATAAGCTATCATGGA+TGG + chr1_2:41482555-41482574 Msa0070740:intron 30.0%
GACACTTAATCAAGCAATAT+TGG - chr1_2:41482737-41482756 None:intergenic 30.0%
! TCCGAATTTGTCTTATTGAT+CGG - chr1_2:41482918-41482937 None:intergenic 30.0%
CCATGAAACATTATGAAATC+TGG - chr1_2:41483098-41483117 None:intergenic 30.0%
CCAGATTTCATAATGTTTCA+TGG + chr1_2:41483095-41483114 Msa0070740:three_prime_UTR 30.0%
!! AAATCGCATTTTAGCGACAA+CGG - chr1_2:41477796-41477815 None:intergenic 35.0%
ACAAAGGTCATTCCAATACT+TGG - chr1_2:41477917-41477936 None:intergenic 35.0%
! AAATCTCATTTTCGCGACAA+AGG - chr1_2:41477933-41477952 None:intergenic 35.0%
! TTGTCGCGAAAATGAGATTT+TGG + chr1_2:41477933-41477952 Msa0070740:intron 35.0%
CATATCATGTTTCGCATCAA+AGG - chr1_2:41478163-41478182 None:intergenic 35.0%
! AAAACTCATTTTCGCGACAT+GGG - chr1_2:41478233-41478252 None:intergenic 35.0%
! AAAAACTCATTTTCGCGACA+TGG - chr1_2:41478234-41478253 None:intergenic 35.0%
! ATGTCGCGAAAATGAGTTTT+TGG + chr1_2:41478233-41478252 Msa0070740:intron 35.0%
ACATATCATGTTTGCATCCA+GGG - chr1_2:41478312-41478331 None:intergenic 35.0%
ATGCCTACAAGTTTGATGAA+TGG + chr1_2:41478409-41478428 Msa0070740:intron 35.0%
TGCCTACAAGTTTGATGAAT+GGG + chr1_2:41478410-41478429 Msa0070740:intron 35.0%
ATCCCATTCATCAAACTTGT+AGG - chr1_2:41478415-41478434 None:intergenic 35.0%
CATATCATGTTTCGCATCAA+GGG - chr1_2:41478163-41478182 None:intergenic 35.0%
TCATATCATGTTTCGCATCA+AGG - chr1_2:41478451-41478470 None:intergenic 35.0%
! AGTATTGGAATGACTATGTC+AGG + chr1_2:41478504-41478523 Msa0070740:intron 35.0%
ACATATCATGTTTCGCATCA+AGG - chr1_2:41478164-41478183 None:intergenic 35.0%
! AAATCTCGTTTTCACGACAA+GGG - chr1_2:41478956-41478975 None:intergenic 35.0%
AAACGAGATTTGAGCCTATT+TGG + chr1_2:41478965-41478984 Msa0070740:intron 35.0%
TTCGTAAAAAGGGACGTTAA+GGG - chr1_2:41479164-41479183 None:intergenic 35.0%
TTTCGTAAAAAGGGACGTTA+AGG - chr1_2:41479165-41479184 None:intergenic 35.0%
TACCGATATCCAAACAAACT+CGG - chr1_2:41479376-41479395 None:intergenic 35.0%
TTGTTTGGATATCGGTAAAC+TGG + chr1_2:41479379-41479398 Msa0070740:intron 35.0%
!! CTTATTTCTGTAAGCTCTTC+AGG - chr1_2:41479599-41479618 None:intergenic 35.0%
AATAAGCTGAAAACAGCTGA+TGG + chr1_2:41479613-41479632 Msa0070740:intron 35.0%
ATAAGCTGAAAACAGCTGAT+GGG + chr1_2:41479614-41479633 Msa0070740:intron 35.0%
AAGCACTAGTGAGATTGTTT+GGG - chr1_2:41479668-41479687 None:intergenic 35.0%
TAAGCACTAGTGAGATTGTT+TGG - chr1_2:41479669-41479688 None:intergenic 35.0%
AGTTCAATCCAACAGTCAAT+AGG - chr1_2:41479847-41479866 None:intergenic 35.0%
TTGACTGTTGGATTGAACTT+TGG + chr1_2:41479848-41479867 Msa0070740:CDS 35.0%
CAAAGATTGGGAAAAAAAGG+AGG - chr1_2:41479997-41480016 None:intergenic 35.0%
GTGCAAAGATTGGGAAAAAA+AGG - chr1_2:41480000-41480019 None:intergenic 35.0%
GTCAATCTTGTTCATCCAAA+TGG - chr1_2:41480060-41480079 None:intergenic 35.0%
! CGAGGTTTTCTACTTAACTT+TGG + chr1_2:41480100-41480119 Msa0070740:CDS 35.0%
AGTGGCTATTGTTTGATTAG+AGG + chr1_2:41480240-41480259 Msa0070740:intron 35.0%
CTATTGTTTGATTAGAGGCT+CGG + chr1_2:41480245-41480264 Msa0070740:intron 35.0%
ACAAGAACAAACGCATAAGT+TGG - chr1_2:41480355-41480374 None:intergenic 35.0%
AAAGATCTTCCAGATGTTGA+AGG + chr1_2:41480450-41480469 Msa0070740:CDS 35.0%
ATTAAGGGTTGCAAGTTCAT+TGG + chr1_2:41480504-41480523 Msa0070740:intron 35.0%
! TGCTACCACTCTTTATTTGT+TGG + chr1_2:41480570-41480589 Msa0070740:intron 35.0%
TCGACCTTTGCTACAAAATT+AGG + chr1_2:41480650-41480669 Msa0070740:CDS 35.0%
AACATTTCTTTCCTTGGTTC+TGG + chr1_2:41480680-41480699 Msa0070740:CDS 35.0%
GACAAGTTAATATTCACCTG+TGG - chr1_2:41480755-41480774 None:intergenic 35.0%
ACAACACCACAACTTACATA+AGG - chr1_2:41480822-41480841 None:intergenic 35.0%
! CTGGTAGTTACATCTTTTAG+GGG + chr1_2:41481412-41481431 Msa0070740:intron 35.0%
!! TTACATCTTTTAGGGGTTGA+AGG + chr1_2:41481419-41481438 Msa0070740:intron 35.0%
!!! CTGTTTGTTTTAGATTCTGG+TGG + chr1_2:41481515-41481534 Msa0070740:intron 35.0%
!! CCCAATGCACTTTTTACTAA+AGG + chr1_2:41481561-41481580 Msa0070740:intron 35.0%
CGTAAAATACACCAAATGGT+GGG - chr1_2:41481731-41481750 None:intergenic 35.0%
TTCTTAGTCACACAAAACAG+TGG + chr1_2:41481931-41481950 Msa0070740:intron 35.0%
GTATTTACATGGCAGATCTT+TGG + chr1_2:41482037-41482056 Msa0070740:intron 35.0%
GCTATCTACAACACTTACAT+TGG + chr1_2:41482079-41482098 Msa0070740:intron 35.0%
TCTATCTTACTGGAAGAGAA+GGG - chr1_2:41482133-41482152 None:intergenic 35.0%
! TTTCAATGGCTCTATCTTAC+TGG - chr1_2:41482143-41482162 None:intergenic 35.0%
! AGTTTAGTTTCTCTTATGCG+AGG - chr1_2:41482275-41482294 None:intergenic 35.0%
!!! TGGGCTTTCTAAAGTACTTT+TGG - chr1_2:41482319-41482338 None:intergenic 35.0%
TGTTTATCCAAGCAGAAACA+GGG - chr1_2:41482428-41482447 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCA+TGG + chr1_2:41482551-41482570 Msa0070740:intron 35.0%
!! CAGGATTCTATCGATTCATA+TGG + chr1_2:41482784-41482803 Msa0070740:CDS 35.0%
GCCGATCAATAAGACAAATT+CGG + chr1_2:41482914-41482933 Msa0070740:three_prime_UTR 35.0%
GCCATGAGAATTCTATACAA+CGG + chr1_2:41483072-41483091 Msa0070740:three_prime_UTR 35.0%
!! AATCGCATTTTAGCGACAAC+GGG - chr1_2:41477795-41477814 None:intergenic 40.0%
! AAATCTCGTTTTCGCGACAA+GGG - chr1_2:41478084-41478103 None:intergenic 40.0%
! AAAATCTCGTTTTCGCGACA+AGG - chr1_2:41478085-41478104 None:intergenic 40.0%
TTCGCATCAAAGGATATCGA+GGG - chr1_2:41478153-41478172 None:intergenic 40.0%
TTTCGCATCAAAGGATATCG+AGG - chr1_2:41478154-41478173 None:intergenic 40.0%
CACATATCATGTTTGCATCC+AGG - chr1_2:41478313-41478332 None:intergenic 40.0%
TATGCATCAAAGGACATCGA+GGG - chr1_2:41478727-41478746 None:intergenic 40.0%
TTATGCATCAAAGGACATCG+AGG - chr1_2:41478728-41478747 None:intergenic 40.0%
! CAAATCTCGTTTTCACGACA+AGG - chr1_2:41478957-41478976 None:intergenic 40.0%
! AGCCGAGTTTGTTTGGATAT+CGG + chr1_2:41479371-41479390 Msa0070740:intron 40.0%
CCTGCAGCTATAGGTAAATA+AGG - chr1_2:41479770-41479789 None:intergenic 40.0%
! CCTTATTTACCTATAGCTGC+AGG + chr1_2:41479767-41479786 Msa0070740:intron 40.0%
ATCTTTCAGTCCAATCTGCA+TGG + chr1_2:41479792-41479811 Msa0070740:CDS 40.0%
TAACCAAGAACCATGCAGAT+TGG - chr1_2:41479805-41479824 None:intergenic 40.0%
GTTATATTCTTTGCAGCAGC+TGG + chr1_2:41479821-41479840 Msa0070740:CDS 40.0%
CAGTTAGCAGTGCAAAGATT+GGG - chr1_2:41480009-41480028 None:intergenic 40.0%
ACAGTTAGCAGTGCAAAGAT+TGG - chr1_2:41480010-41480029 None:intergenic 40.0%
TTGACAGAAGTGACTTATGC+AGG + chr1_2:41480075-41480094 Msa0070740:intron 40.0%
! AACGCATAAGTTGGAGACAA+TGG - chr1_2:41480346-41480365 None:intergenic 40.0%
! AGGAGATCGTAGGTATGTTT+TGG + chr1_2:41480470-41480489 Msa0070740:intron 40.0%
GTTCGGAACATTTCTTTCCT+TGG + chr1_2:41480674-41480693 Msa0070740:CDS 40.0%
TCAGCAAAATTCCAGAACCA+AGG - chr1_2:41480694-41480713 None:intergenic 40.0%
!! TAAGTTGTGGTGTTGTTGAC+AGG + chr1_2:41480826-41480845 Msa0070740:intron 40.0%
GAAGCAAATATTGCATGAGC+TGG - chr1_2:41480875-41480894 None:intergenic 40.0%
TGCTTCAAGCTTGATTTACC+AGG + chr1_2:41480889-41480908 Msa0070740:CDS 40.0%
AGAACAACCTTTGCTTGTTC+TGG + chr1_2:41481393-41481412 Msa0070740:intron 40.0%
GTAACTACCAGAACAAGCAA+AGG - chr1_2:41481403-41481422 None:intergenic 40.0%
CCACTTAGAGTAATCAAGCA+AGG - chr1_2:41481484-41481503 None:intergenic 40.0%
CCTTGCTTGATTACTCTAAG+TGG + chr1_2:41481481-41481500 Msa0070740:intron 40.0%
GCGTAAAATACACCAAATGG+TGG - chr1_2:41481732-41481751 None:intergenic 40.0%
GCTGCGTAAAATACACCAAA+TGG - chr1_2:41481735-41481754 None:intergenic 40.0%
! AAGAGGTTGTTTCCATGACT+TGG + chr1_2:41481774-41481793 Msa0070740:intron 40.0%
TATAAAGCTCCTGTCATGGA+AGG + chr1_2:41481887-41481906 Msa0070740:intron 40.0%
TTAGTCACACAAAACAGTGG+TGG + chr1_2:41481934-41481953 Msa0070740:intron 40.0%
ATCCCTTCACAAATTGCTTG+TGG - chr1_2:41481984-41482003 None:intergenic 40.0%
ACAAGCAATTTGTGAAGGGA+TGG + chr1_2:41481983-41482002 Msa0070740:intron 40.0%
TAGCGGAAGGCAAAAAATGA+AGG - chr1_2:41482063-41482082 None:intergenic 40.0%
!! TAAGTGTTGTAGATAGCGGA+AGG - chr1_2:41482076-41482095 None:intergenic 40.0%
CTCAATGTAACAGTTGGAGT+TGG - chr1_2:41482106-41482125 None:intergenic 40.0%
CAACTCCAACTGTTACATTG+AGG + chr1_2:41482104-41482123 Msa0070740:intron 40.0%
CTATCTTACTGGAAGAGAAG+GGG - chr1_2:41482132-41482151 None:intergenic 40.0%
CTCTATCTTACTGGAAGAGA+AGG - chr1_2:41482134-41482153 None:intergenic 40.0%
! TTGATTAGTTCAAGTCGAGG+TGG + chr1_2:41482177-41482196 Msa0070740:intron 40.0%
! TGATTAGTTCAAGTCGAGGT+GGG + chr1_2:41482178-41482197 Msa0070740:intron 40.0%
!! TTTTGGCTGTTGATCAAGGT+GGG - chr1_2:41482302-41482321 None:intergenic 40.0%
!! GTACTTTTGGCTGTTGATCA+AGG - chr1_2:41482306-41482325 None:intergenic 40.0%
TTTCAAGACACCATCTTTGC+TGG + chr1_2:41482371-41482390 Msa0070740:intron 40.0%
TTCAAGACACCATCTTTGCT+GGG + chr1_2:41482372-41482391 Msa0070740:intron 40.0%
! CATCTTTGCTGGGTTTTTGT+GGG + chr1_2:41482382-41482401 Msa0070740:intron 40.0%
GTTTATCCAAGCAGAAACAG+GGG - chr1_2:41482427-41482446 None:intergenic 40.0%
CTGTTTATCCAAGCAGAAAC+AGG - chr1_2:41482429-41482448 None:intergenic 40.0%
GCTATCATGGATGGCTTATA+TGG + chr1_2:41482564-41482583 Msa0070740:intron 40.0%
GTGTCTGAACTATATGTTGC+AGG + chr1_2:41482752-41482771 Msa0070740:intron 40.0%
ATGTTGCAGGAAGCAATATC+AGG + chr1_2:41482765-41482784 Msa0070740:intron 40.0%
! GCAATTTTTCCAAGGTAGCA+CGG - chr1_2:41482856-41482875 None:intergenic 40.0%
! GCAGGTTTGCAATTTTTCCA+AGG - chr1_2:41482864-41482883 None:intergenic 40.0%
ACTGCTACATTTCTGTATGC+AGG - chr1_2:41482882-41482901 None:intergenic 40.0%
!! GGATCCTAGTGCTTTAAAGA+TGG + chr1_2:41482935-41482954 Msa0070740:three_prime_UTR 40.0%
!! CGAACCATCTTTAAAGCACT+AGG - chr1_2:41482942-41482961 None:intergenic 40.0%
GCCGTTGTATAGAATTCTCA+TGG - chr1_2:41483076-41483095 None:intergenic 40.0%
CATGTAAATGGCACGCATAA+AGG - chr1_2:41483145-41483164 None:intergenic 40.0%
TACGCATCAAGGGACTTCTA+GGG - chr1_2:41477715-41477734 None:intergenic 45.0%
TTACGCATCAAGGGACTTCT+AGG - chr1_2:41477716-41477735 None:intergenic 45.0%
TTTCGCATCAAAGGACTCGA+AGG - chr1_2:41478002-41478021 None:intergenic 45.0%
TCAAAGGATATCGAGGGACA+TGG - chr1_2:41478147-41478166 None:intergenic 45.0%
TTTGCATCCAGGGACATCAA+GGG - chr1_2:41478302-41478321 None:intergenic 45.0%
TTCGCATCAAGGAACATCGA+GGG - chr1_2:41478876-41478895 None:intergenic 45.0%
TTTCGCATCAAGGAACATCG+AGG - chr1_2:41478877-41478896 None:intergenic 45.0%
TTTCGCATCAAGGGACATCA+AGG - chr1_2:41479340-41479359 None:intergenic 45.0%
GAAAGATCTCCTGCAGCTAT+AGG - chr1_2:41479779-41479798 None:intergenic 45.0%
AGTCCAATCTGCATGGTTCT+TGG + chr1_2:41479799-41479818 Msa0070740:CDS 45.0%
! TACTCCTTCGGCCTTTTTCT+TGG + chr1_2:41479890-41479909 Msa0070740:CDS 45.0%
AGTACCAAGAAAAAGGCCGA+AGG - chr1_2:41479897-41479916 None:intergenic 45.0%
TTTCATCCTAAGCGGAGGAA+CGG - chr1_2:41479927-41479946 None:intergenic 45.0%
!! GGAAAGCGTTTCATCCTAAG+CGG - chr1_2:41479935-41479954 None:intergenic 45.0%
AAGTGACTTATGCAGGTACG+AGG + chr1_2:41480082-41480101 Msa0070740:intron 45.0%
!! CTCTTGGACTTGCTTTTGAG+TGG + chr1_2:41480146-41480165 Msa0070740:CDS 45.0%
!! TTGGACTTGCTTTTGAGTGG+AGG + chr1_2:41480149-41480168 Msa0070740:CDS 45.0%
GTTGCTTCGTACTTCGCAAT+TGG + chr1_2:41480191-41480210 Msa0070740:intron 45.0%
TGAACAACTGAGATCACGAG+TGG + chr1_2:41480222-41480241 Msa0070740:intron 45.0%
CTACGATCTCCTTCAACATC+TGG - chr1_2:41480462-41480481 None:intergenic 45.0%
CAGATGTTGAAGGAGATCGT+AGG + chr1_2:41480460-41480479 Msa0070740:CDS 45.0%
GGCAGCAATTTATATGCCAC+AGG + chr1_2:41480736-41480755 Msa0070740:CDS 45.0%
GATTTACCAGGTTCGATGAG+CGG + chr1_2:41480901-41480920 Msa0070740:intron 45.0%
ATTAATCCGCTCATCGAACC+TGG - chr1_2:41480910-41480929 None:intergenic 45.0%
CTACTGAGTTGTGTGTTGTC+TGG + chr1_2:41481032-41481051 Msa0070740:intron 45.0%
!! CATCTTTTAGGGGTTGAAGG+AGG + chr1_2:41481422-41481441 Msa0070740:intron 45.0%
TCACGTTACTGAAAGGTCAC+GGG - chr1_2:41481801-41481820 None:intergenic 45.0%
GTCACGTTACTGAAAGGTCA+CGG - chr1_2:41481802-41481821 None:intergenic 45.0%
! GGTGTTGTCACGTTACTGAA+AGG - chr1_2:41481808-41481827 None:intergenic 45.0%
ACACCTTTACTGTTGTGCCA+AGG + chr1_2:41481823-41481842 Msa0070740:intron 45.0%
TATCATTGAAGAGGGAGCCT+TGG - chr1_2:41481843-41481862 None:intergenic 45.0%
CGTCTATAAAGCTCCTGTCA+TGG + chr1_2:41481883-41481902 Msa0070740:intron 45.0%
ACACAAAACAGTGGTGGCTA+TGG + chr1_2:41481940-41481959 Msa0070740:intron 45.0%
CCTTCACAAATTGCTTGTGG+CGG - chr1_2:41481981-41482000 None:intergenic 45.0%
CGCCACAAGCAATTTGTGAA+GGG + chr1_2:41481979-41481998 Msa0070740:intron 45.0%
GCCATGTAAATACGCCATTG+CGG - chr1_2:41482030-41482049 None:intergenic 45.0%
!! CTTTTGGCTGTTGATCAAGG+TGG - chr1_2:41482303-41482322 None:intergenic 45.0%
CCACAAAAACCCAGCAAAGA+TGG - chr1_2:41482384-41482403 None:intergenic 45.0%
! CCATCTTTGCTGGGTTTTTG+TGG + chr1_2:41482381-41482400 Msa0070740:intron 45.0%
!! AGCACGGTTTGCTAGATGAA+AGG - chr1_2:41482840-41482859 None:intergenic 45.0%
AACTTGTCCCTTGATGTCCC+TGG + chr1_2:41478292-41478311 Msa0070740:intron 50.0%
GTTTGCATCCAGGGACATCA+AGG - chr1_2:41478303-41478322 None:intergenic 50.0%
TCTATTCCGTTCCTCCGCTT+AGG + chr1_2:41479918-41479937 Msa0070740:CDS 50.0%
AAGCGTTTCATCCTAAGCGG+AGG - chr1_2:41479932-41479951 None:intergenic 50.0%
! AAGTCCAAGAGCAGCTCTAG+TGG - chr1_2:41480137-41480156 None:intergenic 50.0%
AAAAACCACAGGAGAGCTGC+AGG - chr1_2:41480385-41480404 None:intergenic 50.0%
!! GGTGTTGTTGACAGGCTTTC+AGG + chr1_2:41480834-41480853 Msa0070740:intron 50.0%
GTTGACAGGCTTTCAGGAGA+TGG + chr1_2:41480840-41480859 Msa0070740:intron 50.0%
TAATCAATAAGGGGGCAGCC+CGG + chr1_2:41481665-41481684 Msa0070740:intron 50.0%
ACTAAAGCTCCCGCATACGT+AGG + chr1_2:41481691-41481710 Msa0070740:intron 50.0%
CTAAAGCTCCCGCATACGTA+GGG + chr1_2:41481692-41481711 Msa0070740:intron 50.0%
TTCCCATACCCTACGTATGC+GGG - chr1_2:41481703-41481722 None:intergenic 50.0%
CTTCCCATACCCTACGTATG+CGG - chr1_2:41481704-41481723 None:intergenic 50.0%
GCATACGTAGGGTATGGGAA+GGG + chr1_2:41481703-41481722 Msa0070740:intron 50.0%
CATACGTAGGGTATGGGAAG+GGG + chr1_2:41481704-41481723 Msa0070740:intron 50.0%
GAGCCTTGGCACAACAGTAA+AGG - chr1_2:41481829-41481848 None:intergenic 50.0%
CTCCTGTCATGGAAGGTCTA+GGG + chr1_2:41481894-41481913 Msa0070740:intron 50.0%
CCGCCACAAGCAATTTGTGA+AGG + chr1_2:41481978-41481997 Msa0070740:intron 50.0%
AAATACGCCATTGCGGCCTA+TGG - chr1_2:41482023-41482042 None:intergenic 50.0%
GCCGCAATGGCGTATTTACA+TGG + chr1_2:41482026-41482045 Msa0070740:intron 50.0%
GGGAGCCTCAATGTAACAGT+TGG - chr1_2:41482112-41482131 None:intergenic 50.0%
TTAGTTCAAGTCGAGGTGGG+TGG + chr1_2:41482181-41482200 Msa0070740:intron 50.0%
! ATGAGTTTTCCCCCTCAGGT+TGG - chr1_2:41482208-41482227 None:intergenic 50.0%
! ATGGATGAGTTTTCCCCCTC+AGG - chr1_2:41482212-41482231 None:intergenic 50.0%
TCTAGCAAACCGTGCTACCT+TGG + chr1_2:41482844-41482863 Msa0070740:exon 50.0%
! GCAGCTGGCCTATTGACTGT+TGG + chr1_2:41479836-41479855 Msa0070740:CDS 55.0%
TACGCCACTAGAGCTGCTCT+TGG + chr1_2:41480130-41480149 Msa0070740:CDS 55.0%
ATCTACCTGCAGCTCTCCTG+TGG + chr1_2:41480377-41480396 Msa0070740:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr1_2:41481687-41481706 None:intergenic 55.0%
CTCCCGCATACGTAGGGTAT+GGG + chr1_2:41481698-41481717 Msa0070740:intron 55.0%
CGCATACGTAGGGTATGGGA+AGG + chr1_2:41481702-41481721 Msa0070740:intron 55.0%
AAGGTCACGGGTCCAAGTCA+TGG - chr1_2:41481789-41481808 None:intergenic 55.0%
GCTCCTGTCATGGAAGGTCT+AGG + chr1_2:41481893-41481912 Msa0070740:intron 55.0%
GTCCCTAGACCTTCCATGAC+AGG - chr1_2:41481899-41481918 None:intergenic 55.0%
TCCAAGCAGAAACAGGGGAC+CGG - chr1_2:41482422-41482441 None:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr1_2:41481686-41481705 None:intergenic 60.0%
GCTCCCGCATACGTAGGGTA+TGG + chr1_2:41481697-41481716 Msa0070740:intron 60.0%
TGGGAAGGGGTCCCACCATT+TGG + chr1_2:41481717-41481736 Msa0070740:intron 60.0%
TTGTGAAGGGATGGCCGCCA+TGG + chr1_2:41481992-41482011 Msa0070740:intron 60.0%
GGCCTATGGCACTTCCATGG+CGG - chr1_2:41482009-41482028 None:intergenic 60.0%
TGCGGCCTATGGCACTTCCA+TGG - chr1_2:41482012-41482031 None:intergenic 60.0%
!! GGAAGTGCCATAGGCCGCAA+TGG + chr1_2:41482013-41482032 Msa0070740:intron 60.0%
AGGTGGGTGGACCAACCTGA+GGG + chr1_2:41482194-41482213 Msa0070740:intron 60.0%
!! GGCCGCCATGGAAGTGCCAT+AGG + chr1_2:41482004-41482023 Msa0070740:intron 65.0%
GAGGTGGGTGGACCAACCTG+AGG + chr1_2:41482193-41482212 Msa0070740:intron 65.0%
GGTGGGTGGACCAACCTGAG+GGG + chr1_2:41482195-41482214 Msa0070740:intron 65.0%
GTGGGTGGACCAACCTGAGG+GGG + chr1_2:41482196-41482215 Msa0070740:intron 65.0%
!! GCCGGTCCCCTGTTTCTGCT+TGG + chr1_2:41482418-41482437 Msa0070740:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 41477411 41483168 41477411 ID=Msa0070740;Name=Msa0070740
chr1_2 mRNA 41477411 41483168 41477411 ID=Msa0070740-mRNA-1;Parent=Msa0070740;Name=Msa0070740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.85|0.75|0.87|1|1|8|320|221
chr1_2 exon 41477411 41477426 41477411 ID=Msa0070740-mRNA-1:exon:12692;Parent=Msa0070740-mRNA-1
chr1_2 exon 41479789 41479982 41479789 ID=Msa0070740-mRNA-1:exon:12693;Parent=Msa0070740-mRNA-1
chr1_2 exon 41480097 41480170 41480097 ID=Msa0070740-mRNA-1:exon:12694;Parent=Msa0070740-mRNA-1
chr1_2 exon 41480389 41480481 41480389 ID=Msa0070740-mRNA-1:exon:12695;Parent=Msa0070740-mRNA-1
chr1_2 exon 41480640 41480757 41480640 ID=Msa0070740-mRNA-1:exon:12696;Parent=Msa0070740-mRNA-1
chr1_2 exon 41480848 41480910 41480848 ID=Msa0070740-mRNA-1:exon:12697;Parent=Msa0070740-mRNA-1
chr1_2 exon 41481228 41481260 41481228 ID=Msa0070740-mRNA-1:exon:12698;Parent=Msa0070740-mRNA-1
chr1_2 exon 41482774 41483168 41482774 ID=Msa0070740-mRNA-1:exon:12699;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41477411 41477426 41477411 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41479789 41479982 41479789 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41480097 41480170 41480097 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41480389 41480481 41480389 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41480640 41480757 41480640 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41480848 41480910 41480848 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41481228 41481260 41481228 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 CDS 41482774 41482848 41482774 ID=Msa0070740-mRNA-1:cds;Parent=Msa0070740-mRNA-1
chr1_2 three_prime_UTR 41482849 41483168 41482849 ID=Msa0070740-mRNA-1:three_prime_utr;Parent=Msa0070740-mRNA-1
Gene Sequence

>Msa0070740

ATGCAGTCTTCTCAAGGAGATCTTTCAGTCCAATCTGCATGGTTCTTGGTTATATTCTTTGCAGCAGCTGGCCTATTGACTGTTGGATTGAACTTTGGACCTTTTATTTTTTCGCTTTACTCCTTCGGCCTTTTTCTTGGTACTATCTATTCCGTTCCTCCGCTTAGGATGAAACGCTTTCCTGTTGCAGCATTTCTTATTATTGCTACGGTACGAGGTTTTCTACTTAACTTTGGTGTGTACTACGCCACTAGAGCTGCTCTTGGACTTGCTTTTGAGTGGAGCTCTCCTGTGGTTTTTATCACAACTTTCGTAACATTTTTCGCATTGGTAGTTGCTATAACAAAAGATCTTCCAGATGTTGAAGGAGATCGTAGGTATCAGATATCGACCTTTGCTACAAAATTAGGAGTTCGGAACATTTCTTTCCTTGGTTCTGGAATTTTGCTGATGAACTATGTTGTTACCATATTGGCAGCAATTTATATGCCACAGGCTTTCAGGAGATGGTTACTGATACCAGCTCATGCAATATTTGCTTCAAGCTTGATTTACCAGGTGCAGATATTAGAAAAAGCAAATTATACAAAGGAAGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCATTATTTCCTTTCATCTAG

Protein sequence

>Msa0070740

MQSSQGDLSVQSAWFLVIFFAAAGLLTVGLNFGPFIFSLYSFGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVVAITKDLPDVEGDRRYQISTFATKLGVRNISFLGSGILLMNYVVTILAAIYMPQAFRRWLLIPAHAIFASSLIYQVQILEKANYTKEAISGFYRFIWNLFYAEYALFPFI*