AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1168960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168960 MtrunA17_Chr7g0264071 90.057 352 4 2 1 345 1 328 0.0 637
Msa1168960 MtrunA17_Chr1g0181351 68.091 351 99 7 1 344 1 345 8.83e-151 428
Msa1168960 MtrunA17_Chr2g0287731 50.193 259 120 4 96 345 127 385 1.81e-85 263
Msa1168960 MtrunA17_Chr4g0065661 45.364 302 146 8 58 345 61 357 2.47e-82 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168960 AT3G09770.1 65.169 267 87 3 80 341 104 369 1.13e-119 351
Msa1168960 AT3G53410.1 56.667 300 105 7 48 345 21 297 2.72e-108 318
Msa1168960 AT5G03200.1 51.143 350 143 7 1 339 1 333 6.54e-105 311
Msa1168960 AT3G09770.2 60.169 236 88 3 80 310 104 338 4.76e-93 281
Msa1168960 AT5G19080.1 47.651 298 140 6 59 345 83 375 3.20e-85 262
Msa1168960 AT3G06140.1 45.946 296 146 6 56 345 69 356 3.83e-76 238

Find 140 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATCATCATTTCAAAATT+AGG 0.094840 7_4:+61870558 Msa1168960:five_prime_UTR
ACCTTTGATGCTGCCGTATC+TGG 0.118140 7_4:+61871005 Msa1168960:CDS
AATTGATGAGGTGCGATTTC+GGG 0.192329 7_4:-61870699 None:intergenic
GGTTTCTCCCTCATTTATTC+TGG 0.202826 7_4:+61875619 Msa1168960:three_prime_UTR
CGATCATCATTTCAAAATTA+GGG 0.236357 7_4:+61870559 Msa1168960:five_prime_UTR
TAATAATGGAATATAGAAAT+AGG 0.236799 7_4:-61870417 None:intergenic
TGGACTGTACAGGAAGTTTA+TGG 0.242147 7_4:-61875544 None:intergenic
GAATTGATGAGGTGCGATTT+CGG 0.285307 7_4:-61870700 None:intergenic
ACAACCAGTTGAAAGGCTTT+TGG 0.292916 7_4:+61875476 Msa1168960:CDS
GGATAATGCATGGGTGGGTT+AGG 0.322234 7_4:-61870747 None:intergenic
GATGATGATGGTGGGTATAA+TGG 0.341069 7_4:-61870380 None:intergenic
ATTTCGGGTTGTGGTGTTAC+CGG 0.350931 7_4:-61870684 None:intergenic
ATCTGATCCATCATGATTAC+CGG 0.362191 7_4:-61874876 None:intergenic
GTTACCGGAGGTGGTGGTGG+TGG 0.364733 7_4:-61870669 None:intergenic
TCCTCATATGGATCCTGCTT+GGG 0.365700 7_4:+61870824 Msa1168960:CDS
CAACTGGTTGTCTGCAAATC+GGG 0.370008 7_4:-61875464 None:intergenic
TCAACTGGTTGTCTGCAAAT+CGG 0.372927 7_4:-61875465 None:intergenic
TGGATCCTGCTTGGGTTTCT+CGG 0.382151 7_4:+61870832 Msa1168960:CDS
AAGGAAGAAAGGAATAATAA+TGG 0.383520 7_4:-61870431 None:intergenic
TTAGGGTACGGTGCGGCACC+AGG 0.386472 7_4:-61870729 None:intergenic
ACTTCTGTCCAAGACCTTGC+TGG 0.386692 7_4:-61874742 None:intergenic
GCTTGAGTTATCTGAGAGTT+TGG 0.387330 7_4:-61874920 None:intergenic
TATGAGCTGCAGGAGATATA+TGG 0.402009 7_4:+61875016 Msa1168960:CDS
CCTTTGATGCTGCCGTATCT+GGG 0.410660 7_4:+61871006 Msa1168960:CDS
TGGTGGTGGGTGAGTCCGTC+GGG 0.414867 7_4:-61870655 None:intergenic
ATCTCCAAAAGCCTTTCAAC+TGG 0.415200 7_4:-61875480 None:intergenic
GAAAAGGAATAATATTGAAT+CGG 0.418095 7_4:-61870502 None:intergenic
AATAATTTATTAAAATAGAA+AGG 0.418899 7_4:-61870450 None:intergenic
GGTTGTGGTGTTACCGGAGG+TGG 0.426707 7_4:-61870678 None:intergenic
AATAATGGAATATAGAAATA+GGG 0.432895 7_4:-61870416 None:intergenic
GCCTCATCATCATCCTCATA+TGG 0.433411 7_4:+61870812 Msa1168960:CDS
GGAGTCAGATTTAGTAAAGG+TGG 0.440813 7_4:+61874808 Msa1168960:CDS
TGTTCACCCCTGCCGACATA+TGG 0.446468 7_4:+61875126 Msa1168960:CDS
ATTACCCATTGATAGATAGA+TGG 0.446614 7_4:-61870586 None:intergenic
TTACCGGAGGTGGTGGTGGT+GGG 0.450767 7_4:-61870668 None:intergenic
GATCGTTGCTGCATAGGTTA+TGG 0.451609 7_4:-61870541 None:intergenic
GTGGTGGTGGGTGAGTCCGT+CGG 0.453546 7_4:-61870656 None:intergenic
CTTGGTCTAAAATCAGCTAT+AGG 0.457520 7_4:+61875692 Msa1168960:three_prime_UTR
TTTAGACAGCAAGCTGGAAC+TGG 0.459183 7_4:+61874764 Msa1168960:CDS
GATAATGCATGGGTGGGTTA+GGG 0.461186 7_4:-61870746 None:intergenic
TCACCTGATGAGGAAAATCC+TGG 0.463626 7_4:+61870963 Msa1168960:CDS
ATCCTCATATGGATCCTGCT+TGG 0.463662 7_4:+61870823 Msa1168960:CDS
GCGGTGTTTGAGAAGGAAAA+AGG 0.465111 7_4:+61874941 Msa1168960:CDS
ATTAAAATAGAAAGGAAGAA+AGG 0.465413 7_4:-61870442 None:intergenic
TGTGGTGTTACCGGAGGTGG+TGG 0.469980 7_4:-61870675 None:intergenic
TGAAAATACCAGAATAAATG+AGG 0.476423 7_4:-61875627 None:intergenic
CTGCAGGAGATATATGGTAT+TGG 0.477865 7_4:+61875022 Msa1168960:CDS
GTACAATTCCAGCAAGGTCT+TGG 0.478019 7_4:+61874734 Msa1168960:CDS
AAAAGGAATAATATTGAATC+GGG 0.483382 7_4:-61870501 None:intergenic
GGTGTTACCGGAGGTGGTGG+TGG 0.484755 7_4:-61870672 None:intergenic
TGAGGTGCGATTTCGGGTTG+TGG 0.485233 7_4:-61870693 None:intergenic
TTCTTTGCAAAAGAAGATGA+AGG 0.485414 7_4:+61874665 Msa1168960:CDS
TGGGTGAGTCCGTCGGGAAG+CGG 0.486665 7_4:-61870649 None:intergenic
AAATGATGTTAATATTAAGA+AGG 0.487123 7_4:+61870926 Msa1168960:CDS
TGAATATACCATATGTCGGC+AGG 0.487759 7_4:-61875134 None:intergenic
GGAGATAAAGGTAGGGACTG+AGG 0.488255 7_4:+61875497 Msa1168960:CDS
AAATCGGGCATCTATTTGTC+TGG 0.489041 7_4:-61875449 None:intergenic
TTATTACAGTTGGACTGTAC+AGG 0.489581 7_4:-61875554 None:intergenic
CCCAGATACGGCAGCATCAA+AGG 0.490547 7_4:-61871006 None:intergenic
TTCTGTTGGGATGATGATGG+TGG 0.493481 7_4:-61870389 None:intergenic
TACAGTCACAGGTGCAAGAT+GGG 0.494387 7_4:-61874714 None:intergenic
GCTTTCTGATGCTCAACAAA+AGG 0.497062 7_4:-61870891 None:intergenic
TCACCCACCACCACCACCTC+CGG 0.498207 7_4:+61870665 Msa1168960:CDS
AAGCAGATCTTGTCGGTGAA+TGG 0.499467 7_4:+61874986 Msa1168960:CDS
TCGACGACGGTTGTGTCCGC+CGG 0.500495 7_4:-61870619 None:intergenic
TGAGGAGTCAGATTTAGTAA+AGG 0.513325 7_4:+61874805 Msa1168960:CDS
CAAAGTATAATTATTACAGT+TGG 0.516174 7_4:-61875564 None:intergenic
AAAAGTGCTTAATTCATCAA+TGG 0.517205 7_4:+61870326 Msa1168960:five_prime_UTR
TGATGCTCAACAAAAGGTGC+AGG 0.520299 7_4:-61870885 None:intergenic
TCTGTTGGGATGATGATGGT+GGG 0.523242 7_4:-61870388 None:intergenic
AGTTGTTAAGCAGATCTTGT+CGG 0.530254 7_4:+61874979 Msa1168960:CDS
TAACCAGGGTAATGATATTG+AGG 0.535672 7_4:-61870768 None:intergenic
GCATCATCCGGTAATCATGA+TGG 0.536466 7_4:+61874869 Msa1168960:CDS
ACCCAAGCAGGATCCATATG+AGG 0.538916 7_4:-61870825 None:intergenic
TGGAATGCGGTATGAGCTGC+AGG 0.539501 7_4:+61875006 Msa1168960:CDS
TTTGCAGACAACCAGTTGAA+AGG 0.542468 7_4:+61875469 Msa1168960:CDS
GAGTCAGATTTAGTAAAGGT+GGG 0.543543 7_4:+61874809 Msa1168960:CDS
CATTGTAATTTCACCTGATG+AGG 0.545895 7_4:+61870953 Msa1168960:CDS
GTTTCTCGGTACTACCCTTG+TGG 0.547007 7_4:+61870846 Msa1168960:CDS
GAAAACTAACCTCCCAGATA+CGG 0.551062 7_4:-61871018 None:intergenic
GCAAGATGGGTTACCTTGGT+CGG 0.553514 7_4:-61874701 None:intergenic
GTGAAGGCAGATGCATCATC+CGG 0.554451 7_4:+61874857 Msa1168960:CDS
TTTAGTAAAGGTGGGTGACA+TGG 0.558071 7_4:+61874817 Msa1168960:CDS
TGCTGGAATTGTACAGTCAC+AGG 0.558091 7_4:-61874725 None:intergenic
GCATCTGCCTTCACTGCTAG+AGG 0.560301 7_4:-61874848 None:intergenic
TGAGGATGATGATGAGGCAT+AGG 0.565184 7_4:-61870807 None:intergenic
AACTCAAGCGGTGTTTGAGA+AGG 0.567507 7_4:+61874934 Msa1168960:CDS
TGCATGGGTGGGTTAGGGTA+CGG 0.569196 7_4:-61870741 None:intergenic
AAGCGGTGGCGTGTCGACGA+CGG 0.569497 7_4:-61870632 None:intergenic
TGATGATGAGGCATAGGTAT+TGG 0.570267 7_4:-61870801 None:intergenic
TGATTCACCACGGGTCCACA+AGG 0.574272 7_4:-61870861 None:intergenic
ATGGGTAATATCTCAAGCAC+CGG 0.578879 7_4:+61870600 Msa1168960:CDS
ATTGGTGGTGGATAATAACC+AGG 0.584398 7_4:-61870783 None:intergenic
TGTTTACCCTCTAGCAGTGA+AGG 0.588610 7_4:+61874841 Msa1168960:CDS
TGATGAGGCATAGGTATTGG+TGG 0.589183 7_4:-61870798 None:intergenic
GAATATACCATATGTCGGCA+GGG 0.589767 7_4:-61875133 None:intergenic
GTACTACCCTTGTGGACCCG+TGG 0.593118 7_4:+61870854 Msa1168960:CDS
CATCAAAGGTAAACGAAACA+AGG 0.594203 7_4:-61870992 None:intergenic
GTGAGTCCGTCGGGAAGCGG+TGG 0.599821 7_4:-61870646 None:intergenic
CTCATCAGGTGAAATTACAA+TGG 0.602365 7_4:-61870952 None:intergenic
CCTCATCAATTCGTTTACCC+TGG 0.603106 7_4:+61870711 Msa1168960:CDS
TCCATATGAGGATGATGATG+AGG 0.604041 7_4:-61870813 None:intergenic
CTGCATCCTCACACCGACCA+AGG 0.607910 7_4:+61874688 Msa1168960:CDS
TATCCTCAATATCATTACCC+TGG 0.611148 7_4:+61870765 Msa1168960:CDS
GACACGCCACCGCTTCCCGA+CGG 0.612325 7_4:+61870640 Msa1168960:CDS
CAGAAGTTTAGACAGCAAGC+TGG 0.612738 7_4:+61874758 Msa1168960:CDS
GGTGGAATTTATATGACACT+TGG 0.616058 7_4:+61875674 Msa1168960:three_prime_UTR
GTACAGTCACAGGTGCAAGA+TGG 0.616443 7_4:-61874715 None:intergenic
AATGATGATCGTTGCTGCAT+AGG 0.617132 7_4:-61870547 None:intergenic
GAAAATACCAGAATAAATGA+GGG 0.619393 7_4:-61875626 None:intergenic
TCGGGTTGTGGTGTTACCGG+AGG 0.619613 7_4:-61870681 None:intergenic
AATATACCATATGTCGGCAG+GGG 0.619940 7_4:-61875132 None:intergenic
ATGCTGAATATACCATATGT+CGG 0.621925 7_4:-61875138 None:intergenic
ATATGGTATTGGAAATTCAG+TGG 0.622521 7_4:+61875033 Msa1168960:CDS
GGTAATATCTCAAGCACCGG+CGG 0.625709 7_4:+61870603 Msa1168960:CDS
GATGATGGTGGGTATAATGG+AGG 0.628710 7_4:-61870377 None:intergenic
GGTGCAGGTTGATTCACCAC+GGG 0.630188 7_4:-61870870 None:intergenic
CATCTGCCTTCACTGCTAGA+GGG 0.633223 7_4:-61874847 None:intergenic
AGGTGCAAGATGGGTTACCT+TGG 0.637199 7_4:-61874705 None:intergenic
TATTGAGGATAATGCATGGG+TGG 0.640046 7_4:-61870753 None:intergenic
TAGTACCGAGAAACCCAAGC+AGG 0.641166 7_4:-61870837 None:intergenic
TGATATTGAGGATAATGCAT+GGG 0.642567 7_4:-61870756 None:intergenic
AAACTCTCAGATAACTCAAG+CGG 0.648497 7_4:+61874922 Msa1168960:CDS
TGAGGCATAGGTATTGGTGG+TGG 0.650004 7_4:-61870795 None:intergenic
ATGATATTGAGGATAATGCA+TGG 0.652411 7_4:-61870757 None:intergenic
CCAGGGTAAACGAATTGATG+AGG 0.654862 7_4:-61870711 None:intergenic
ATTGAGGATAATGCATGGGT+GGG 0.663150 7_4:-61870752 None:intergenic
GGGTGAACAATTGTGTCGCG+AGG 0.663631 7_4:-61875112 None:intergenic
GGGTTACCTTGGTCGGTGTG+AGG 0.665482 7_4:-61874694 None:intergenic
AGGTGCAGGTTGATTCACCA+CGG 0.673012 7_4:-61870871 None:intergenic
CATGTGTAGTGGATGTGCAA+AGG 0.675895 7_4:+61875416 Msa1168960:CDS
TTGATGCTGCCGTATCTGGG+AGG 0.677621 7_4:+61871009 Msa1168960:CDS
AAATTCAGTGGAGAGTGATG+TGG 0.682565 7_4:+61875045 Msa1168960:CDS
GGTTGCGTATATTTCAACTG+AGG 0.693278 7_4:-61870356 None:intergenic
GTGACTGTACAATTCCAGCA+AGG 0.698948 7_4:+61874728 Msa1168960:CDS
TCTTGTCGGTGAATGGAATG+CGG 0.716236 7_4:+61874993 Msa1168960:CDS
GGGTGGGTTAGGGTACGGTG+CGG 0.722461 7_4:-61870736 None:intergenic
GATGTGGATGACAATGAACA+AGG 0.723839 7_4:+61875061 Msa1168960:CDS
GATTCACCACGGGTCCACAA+GGG 0.725292 7_4:-61870860 None:intergenic
TTGGTGGTGGATAATAACCA+GGG 0.728249 7_4:-61870782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTAAAAAAAATAA+AGG + chr7_4:61870302-61870321 Msa1168960:five_prime_UTR 0.0%
!! GTATATATACATAATATAAT+AGG - chr7_4:61872692-61872711 None:intergenic 10.0%
!! AAAAAAAATATAATGAACTT+CGG - chr7_4:61873240-61873259 None:intergenic 10.0%
!!! AATAATGGAATATAGAAATA+GGG - chr7_4:61870419-61870438 None:intergenic 15.0%
!!! TAATAATGGAATATAGAAAT+AGG - chr7_4:61870420-61870439 None:intergenic 15.0%
!! AAATGATGTTAATATTAAGA+AGG + chr7_4:61870926-61870945 Msa1168960:CDS 15.0%
!!! AATGTGTTATTTTAATGTTT+TGG + chr7_4:61871067-61871086 Msa1168960:intron 15.0%
!!! ATGTGTTATTTTAATGTTTT+GGG + chr7_4:61871068-61871087 Msa1168960:intron 15.0%
!!! TGTTTTATAATAAAGTTTAC+AGG + chr7_4:61871201-61871220 Msa1168960:intron 15.0%
!! TTTCTTGAAGAATTTATTAA+TGG + chr7_4:61871300-61871319 Msa1168960:intron 15.0%
!! TAATTTCTATGAGATATTAA+GGG - chr7_4:61871533-61871552 None:intergenic 15.0%
!! TTAATATCTCATAGAAATTA+GGG + chr7_4:61871533-61871552 Msa1168960:intron 15.0%
!!! AGTTTATTTTTCTTGATTAA+AGG + chr7_4:61872389-61872408 Msa1168960:intron 15.0%
!!! GTTTATTTTTCTTGATTAAA+GGG + chr7_4:61872390-61872409 Msa1168960:intron 15.0%
!!! TTTATTTTTCTTGATTAAAG+GGG + chr7_4:61872391-61872410 Msa1168960:intron 15.0%
!! AAGATACATATATATATGAA+AGG - chr7_4:61872475-61872494 None:intergenic 15.0%
!!! AAATTGTACTTTTATAATGA+AGG - chr7_4:61872565-61872584 None:intergenic 15.0%
!!! GGTCTTATAAAAAAATTAAT+TGG + chr7_4:61872941-61872960 Msa1168960:intron 15.0%
!! GCAAAGAATTAATAATAAAT+TGG - chr7_4:61872967-61872986 None:intergenic 15.0%
!! ACAAATTAGTAGTATTAATT+AGG + chr7_4:61873452-61873471 Msa1168960:intron 15.0%
!! CAAATTAGTAGTATTAATTA+GGG + chr7_4:61873453-61873472 Msa1168960:intron 15.0%
!! AAATTAGTAGTATTAATTAG+GGG + chr7_4:61873454-61873473 Msa1168960:intron 15.0%
!! TAAAATCATAATGATGATTA+TGG + chr7_4:61874569-61874588 Msa1168960:intron 15.0%
!! ATTAAAATAGAAAGGAAGAA+AGG - chr7_4:61870445-61870464 None:intergenic 20.0%
!! AAAAGGAATAATATTGAATC+GGG - chr7_4:61870504-61870523 None:intergenic 20.0%
!! GAAAAGGAATAATATTGAAT+CGG - chr7_4:61870505-61870524 None:intergenic 20.0%
!! TAAATTCTTCAAGAAACATT+TGG - chr7_4:61871296-61871315 None:intergenic 20.0%
!!! TTGTATGTTTTGTTTAAGAA+TGG + chr7_4:61871363-61871382 Msa1168960:intron 20.0%
!! CTAATTTCTATGAGATATTA+AGG - chr7_4:61871534-61871553 None:intergenic 20.0%
!! CTTAATATCTCATAGAAATT+AGG + chr7_4:61871532-61871551 Msa1168960:intron 20.0%
!!! TTATTTTTCTTGATTAAAGG+GGG + chr7_4:61872392-61872411 Msa1168960:intron 20.0%
!!! TTTAAAATAGGGTTAATTCA+GGG - chr7_4:61872903-61872922 None:intergenic 20.0%
!!! ATTTAAAATAGGGTTAATTC+AGG - chr7_4:61872904-61872923 None:intergenic 20.0%
!! TTTATTACACATACAAACAA+AGG - chr7_4:61873411-61873430 None:intergenic 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr7_4:61873536-61873555 Msa1168960:intron 20.0%
!! TACACAAAAATAGCAAAATA+CGG - chr7_4:61873619-61873638 None:intergenic 20.0%
!!! TTTTTTGAAGCACTTATATT+TGG - chr7_4:61874088-61874107 None:intergenic 20.0%
!!! TTCTTTTGCAAAGAAAAATA+TGG - chr7_4:61874660-61874679 None:intergenic 20.0%
!!! TATTAACTTTTCAATGTTTG+AGG + chr7_4:61874787-61874806 Msa1168960:CDS 20.0%
!! CGAAAAATTTCATTCAAAAA+AGG - chr7_4:61875164-61875183 None:intergenic 20.0%
!!! TTTGAAACAATTTCAGTTTT+AGG + chr7_4:61875287-61875306 Msa1168960:intron 20.0%
!!! TAATTTTCAGCAGTTAAATT+TGG - chr7_4:61875339-61875358 None:intergenic 20.0%
!! CAAAGTATAATTATTACAGT+TGG - chr7_4:61875567-61875586 None:intergenic 20.0%
!! TAAAAAATGAAAAGAAAGCA+GGG - chr7_4:61875598-61875617 None:intergenic 20.0%
!! ATAAAAAATGAAAAGAAAGC+AGG - chr7_4:61875599-61875618 None:intergenic 20.0%
!!! TGCTTTCTTTTCATTTTTTA+TGG + chr7_4:61875598-61875617 Msa1168960:three_prime_UTR 20.0%
!!! AAAAGTGCTTAATTCATCAA+TGG + chr7_4:61870326-61870345 Msa1168960:five_prime_UTR 25.0%
! AAGGAAGAAAGGAATAATAA+TGG - chr7_4:61870434-61870453 None:intergenic 25.0%
! ACGATCATCATTTCAAAATT+AGG + chr7_4:61870558-61870577 Msa1168960:five_prime_UTR 25.0%
! CGATCATCATTTCAAAATTA+GGG + chr7_4:61870559-61870578 Msa1168960:five_prime_UTR 25.0%
!! TTTTCCATCTATCTATCAAT+GGG + chr7_4:61870582-61870601 Msa1168960:exon 25.0%
! AACACAACAATATACAAAGA+GGG - chr7_4:61871122-61871141 None:intergenic 25.0%
! AAACACAACAATATACAAAG+AGG - chr7_4:61871123-61871142 None:intergenic 25.0%
!!! ATGTTTTGTTTAAGAATGGA+TGG + chr7_4:61871367-61871386 Msa1168960:intron 25.0%
!!! TGTTTTGTTTAAGAATGGAT+GGG + chr7_4:61871368-61871387 Msa1168960:intron 25.0%
!!! CATTACGAACTGATTTTATA+GGG - chr7_4:61871574-61871593 None:intergenic 25.0%
!!! ACATTACGAACTGATTTTAT+AGG - chr7_4:61871575-61871594 None:intergenic 25.0%
! TGAATGACAAAAGATATTGT+TGG + chr7_4:61871666-61871685 Msa1168960:intron 25.0%
! CAAAATAGAGACTACAATTA+AGG - chr7_4:61871700-61871719 None:intergenic 25.0%
!! CTTAATTGTAGTCTCTATTT+TGG + chr7_4:61871698-61871717 Msa1168960:intron 25.0%
! CATCCTGATTACTAAAAATA+TGG + chr7_4:61871761-61871780 Msa1168960:intron 25.0%
!!! TAGCCATATTTTTAGTAATC+AGG - chr7_4:61871767-61871786 None:intergenic 25.0%
! TAAAAATATGGCTAAGTAGT+AGG + chr7_4:61871773-61871792 Msa1168960:intron 25.0%
! ACTCTGTTGAACTTATAATA+CGG + chr7_4:61872074-61872093 Msa1168960:intron 25.0%
! ATATGAAAGGAAACAAAACA+AGG - chr7_4:61872462-61872481 None:intergenic 25.0%
! TTATAAATGCTCACAATGTT+CGG - chr7_4:61872503-61872522 None:intergenic 25.0%
! ACATTGTGAGCATTTATAAT+TGG + chr7_4:61872504-61872523 Msa1168960:intron 25.0%
! TTTATAATGAAGGAGGATAT+TGG - chr7_4:61872555-61872574 None:intergenic 25.0%
!! TTGTACTTTTATAATGAAGG+AGG - chr7_4:61872562-61872581 None:intergenic 25.0%
!!! AGTATAATGAACTTTTTGGT+GGG - chr7_4:61873282-61873301 None:intergenic 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG - chr7_4:61873328-61873347 None:intergenic 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG - chr7_4:61873329-61873348 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr7_4:61873464-61873483 Msa1168960:intron 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr7_4:61873500-61873519 Msa1168960:intron 25.0%
! TTGAAAAGGAGTTTACATTT+AGG + chr7_4:61873514-61873533 Msa1168960:intron 25.0%
! TGAAAAGGAGTTTACATTTA+GGG + chr7_4:61873515-61873534 Msa1168960:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr7_4:61873535-61873554 Msa1168960:intron 25.0%
! AGCAAAATACGGAAAATTAA+AGG - chr7_4:61873608-61873627 None:intergenic 25.0%
! ATGTTGTTAATCTCATATAG+CGG - chr7_4:61873750-61873769 None:intergenic 25.0%
! ATTATAGACAAAATATGACG+AGG - chr7_4:61873890-61873909 None:intergenic 25.0%
! CTTAATCGGTAATGTATATT+AGG - chr7_4:61874326-61874345 None:intergenic 25.0%
! TGCTCTTAAGTTTACTTAAT+CGG - chr7_4:61874340-61874359 None:intergenic 25.0%
! TACATAATACTCCTTGATAT+GGG - chr7_4:61874450-61874469 None:intergenic 25.0%
! TTACATAATACTCCTTGATA+TGG - chr7_4:61874451-61874470 None:intergenic 25.0%
! ACTGAAATTGTTTCAAAAGA+AGG - chr7_4:61875284-61875303 None:intergenic 25.0%
! ACTGCTGAAAATTACTTATT+TGG + chr7_4:61875345-61875364 Msa1168960:intron 25.0%
! AAAAAATGAAAAGAAAGCAG+GGG - chr7_4:61875597-61875616 None:intergenic 25.0%
! GAAAATACCAGAATAAATGA+GGG - chr7_4:61875629-61875648 None:intergenic 25.0%
! TGAAAATACCAGAATAAATG+AGG - chr7_4:61875630-61875649 None:intergenic 25.0%
!! TTATTCTGGTATTTTCAATG+AGG + chr7_4:61875633-61875652 Msa1168960:three_prime_UTR 25.0%
!! TATTCTGGTATTTTCAATGA+GGG + chr7_4:61875634-61875653 Msa1168960:three_prime_UTR 25.0%
!!! GAAATAGGGTTTTTTCTGTT+GGG - chr7_4:61870405-61870424 None:intergenic 30.0%
!!! AGAAATAGGGTTTTTTCTGT+TGG - chr7_4:61870406-61870425 None:intergenic 30.0%
! GTTTTCCATCTATCTATCAA+TGG + chr7_4:61870581-61870600 Msa1168960:exon 30.0%
ATTACCCATTGATAGATAGA+TGG - chr7_4:61870589-61870608 None:intergenic 30.0%
TGATATTGAGGATAATGCAT+GGG - chr7_4:61870759-61870778 None:intergenic 30.0%
ATGATATTGAGGATAATGCA+TGG - chr7_4:61870760-61870779 None:intergenic 30.0%
! AAGACACAGTTTTTCTTGTA+TGG + chr7_4:61871157-61871176 Msa1168960:intron 30.0%
! AATGGTGTCAAAATAAGAGT+TGG + chr7_4:61871318-61871337 Msa1168960:intron 30.0%
!!! GTTTTGTTTAAGAATGGATG+GGG + chr7_4:61871369-61871388 Msa1168960:intron 30.0%
ATCAAAGATTGTGCTAGTTA+TGG - chr7_4:61871488-61871507 None:intergenic 30.0%
TGAGATATTAAGGGTAGAAA+AGG - chr7_4:61871524-61871543 None:intergenic 30.0%
ATCTCATAGAAATTAGGGTT+AGG + chr7_4:61871538-61871557 Msa1168960:intron 30.0%
TCTCATAGAAATTAGGGTTA+GGG + chr7_4:61871539-61871558 Msa1168960:intron 30.0%
! CTGATTTTATAGGGTTTAGT+GGG - chr7_4:61871565-61871584 None:intergenic 30.0%
!! ACTGATTTTATAGGGTTTAG+TGG - chr7_4:61871566-61871585 None:intergenic 30.0%
TAAAATCAGTTCGTAATGTG+AGG + chr7_4:61871576-61871595 Msa1168960:intron 30.0%
AATAGAGACTACAATTAAGG+AGG - chr7_4:61871697-61871716 None:intergenic 30.0%
!! ATTTTGGCAAATAGAACCAT+TGG + chr7_4:61871714-61871733 Msa1168960:intron 30.0%
ATTCAGAGTTTACATAGACA+TGG - chr7_4:61871896-61871915 None:intergenic 30.0%
CGTGTTTATGTTTCAAAGTA+AGG + chr7_4:61872015-61872034 Msa1168960:intron 30.0%
! TTCCATTCAATTAGCTTACT+TGG - chr7_4:61872141-61872160 None:intergenic 30.0%
AGTAAGCTAATTGAATGGAA+AGG + chr7_4:61872141-61872160 Msa1168960:intron 30.0%
CACTAAAAAGTCTAAGTGAA+AGG + chr7_4:61872184-61872203 Msa1168960:intron 30.0%
AAGTAGCGTTTGTATTAAGT+TGG + chr7_4:61872293-61872312 Msa1168960:intron 30.0%
! AAAACAAGGTAGAACCTTTT+CGG - chr7_4:61872448-61872467 None:intergenic 30.0%
AAGCTCTCTAACATAGAAAA+CGG + chr7_4:61872593-61872612 Msa1168960:intron 30.0%
!! TTTTGCTGCTTACTTTATCA+AGG + chr7_4:61872645-61872664 Msa1168960:intron 30.0%
ACACTAAAAAGATCTATAGC+TGG - chr7_4:61872714-61872733 None:intergenic 30.0%
! ATTCTTTGCAAACACGTTTT+AGG + chr7_4:61872978-61872997 Msa1168960:intron 30.0%
! GAGTATAATGAACTTTTTGG+TGG - chr7_4:61873283-61873302 None:intergenic 30.0%
!! AGGGAGTATAATGAACTTTT+TGG - chr7_4:61873286-61873305 None:intergenic 30.0%
AAATGTGAAAAAAGCAAAGG+GGG - chr7_4:61873326-61873345 None:intergenic 30.0%
GAAATGTGAAAAAAGCAAAG+GGG - chr7_4:61873327-61873346 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - chr7_4:61873402-61873421 None:intergenic 30.0%
TCAAATGGGTGTTTAGATAT+AGG + chr7_4:61873550-61873569 Msa1168960:intron 30.0%
CAAATGGGTGTTTAGATATA+GGG + chr7_4:61873551-61873570 Msa1168960:intron 30.0%
! CTATACTCTATAGCAGTTTT+GGG + chr7_4:61873708-61873727 Msa1168960:intron 30.0%
! TATACTCTATAGCAGTTTTG+GGG + chr7_4:61873709-61873728 Msa1168960:intron 30.0%
! AACATGTTTTCTGTCAAATG+TGG + chr7_4:61873859-61873878 Msa1168960:intron 30.0%
! ACATGTTTTCTGTCAAATGT+GGG + chr7_4:61873860-61873879 Msa1168960:intron 30.0%
AAAATCCCAAGATTCAACAA+TGG + chr7_4:61874104-61874123 Msa1168960:intron 30.0%
TCATTCCATTGTTGAATCTT+GGG - chr7_4:61874112-61874131 None:intergenic 30.0%
ATCATTCCATTGTTGAATCT+TGG - chr7_4:61874113-61874132 None:intergenic 30.0%
ATCAAATCGATGTTCAAATC+AGG + chr7_4:61874259-61874278 Msa1168960:intron 30.0%
CATAATGATGATTATGGATG+TGG + chr7_4:61874575-61874594 Msa1168960:intron 30.0%
CTTTACTTTAGTTGTTCTGA+AGG + chr7_4:61874602-61874621 Msa1168960:intron 30.0%
TTCTTTGCAAAAGAAGATGA+AGG + chr7_4:61874665-61874684 Msa1168960:CDS 30.0%
! ATATGGTATTGGAAATTCAG+TGG + chr7_4:61875033-61875052 Msa1168960:CDS 30.0%
ATGCTGAATATACCATATGT+CGG - chr7_4:61875141-61875160 None:intergenic 30.0%
AGTTGATTGAATGATACTGA+TGG + chr7_4:61875190-61875209 Msa1168960:intron 30.0%
! ATTCTGGTATTTTCAATGAG+GGG + chr7_4:61875635-61875654 Msa1168960:three_prime_UTR 30.0%
! TTTTTCTGTTGGGATGATGA+TGG - chr7_4:61870395-61870414 None:intergenic 35.0%
! TTTTGTGGAAAGAGCAGAAA+AGG - chr7_4:61870521-61870540 None:intergenic 35.0%
TATCCTCAATATCATTACCC+TGG + chr7_4:61870765-61870784 Msa1168960:CDS 35.0%
TAACCAGGGTAATGATATTG+AGG - chr7_4:61870771-61870790 None:intergenic 35.0%
CTCATCAGGTGAAATTACAA+TGG - chr7_4:61870955-61870974 None:intergenic 35.0%
CATTGTAATTTCACCTGATG+AGG + chr7_4:61870953-61870972 Msa1168960:CDS 35.0%
AACGAAACAAGGAAAAAACC+AGG - chr7_4:61870984-61871003 None:intergenic 35.0%
CATCAAAGGTAAACGAAACA+AGG - chr7_4:61870995-61871014 None:intergenic 35.0%
TGAACTTGATGAACTTGGTA+TGG + chr7_4:61871225-61871244 Msa1168960:intron 35.0%
GTATGGTAGGACAGAATAAT+CGG + chr7_4:61871242-61871261 Msa1168960:intron 35.0%
TGGTTACCTCCAAAATAGTT+TGG + chr7_4:61871413-61871432 Msa1168960:intron 35.0%
! AACAGACTGCCAAACTATTT+TGG - chr7_4:61871425-61871444 None:intergenic 35.0%
! ATAGTTTGGCAGTCTGTTTT+AGG + chr7_4:61871427-61871446 Msa1168960:intron 35.0%
! TAGTTTGGCAGTCTGTTTTA+GGG + chr7_4:61871428-61871447 Msa1168960:intron 35.0%
!! TTAGGGTTTTATGTTGTTCG+CGG + chr7_4:61871445-61871464 Msa1168960:intron 35.0%
TTTATGTTGTTCGCGGTATT+CGG + chr7_4:61871452-61871471 Msa1168960:intron 35.0%
TAGCTAGAGTTTACGACTTT+AGG + chr7_4:61871841-61871860 Msa1168960:intron 35.0%
GAGTTTACATAGACATGGTT+TGG - chr7_4:61871891-61871910 None:intergenic 35.0%
TGATTCTGTGCAAATCTATG+AGG - chr7_4:61871927-61871946 None:intergenic 35.0%
TAGATTTGCACAGAATCACA+TGG + chr7_4:61871929-61871948 Msa1168960:intron 35.0%
TTGAGGATGATTTGAATGCA+TGG + chr7_4:61871952-61871971 Msa1168960:intron 35.0%
!! AGCGTTTGTATTAAGTTGGT+TGG + chr7_4:61872297-61872316 Msa1168960:intron 35.0%
TATGTTAGAGAGCTTCAAAG+TGG - chr7_4:61872588-61872607 None:intergenic 35.0%
GCTTACTTTATCAAGGTAGT+TGG + chr7_4:61872652-61872671 Msa1168960:intron 35.0%
TTAAAGAGTTGTGGCTATCA+TGG + chr7_4:61872807-61872826 Msa1168960:intron 35.0%
GTTAATTCAGGGATTTCAGT+TGG - chr7_4:61872892-61872911 None:intergenic 35.0%
!! ACCCTATTTTAAATGCTGTC+TGG + chr7_4:61872910-61872929 Msa1168960:intron 35.0%
! CCCAGACAGCATTTAAAATA+GGG - chr7_4:61872914-61872933 None:intergenic 35.0%
!! CCCTATTTTAAATGCTGTCT+GGG + chr7_4:61872911-61872930 Msa1168960:intron 35.0%
!! CCTATTTTAAATGCTGTCTG+GGG + chr7_4:61872912-61872931 Msa1168960:intron 35.0%
!!! CGACGTTCATTTTTTTCCTT+TGG + chr7_4:61873084-61873103 Msa1168960:intron 35.0%
AATGTGAAAAAAGCAAAGGG+GGG - chr7_4:61873325-61873344 None:intergenic 35.0%
! GCTATACTCTATAGCAGTTT+TGG + chr7_4:61873707-61873726 Msa1168960:intron 35.0%
TGAGAGTCTACATAATTGCA+CGG - chr7_4:61874007-61874026 None:intergenic 35.0%
! ACTCTCAAGTTTTACAATCC+TGG + chr7_4:61874020-61874039 Msa1168960:intron 35.0%
TCTTGTAGACTTATTCTACC+AGG - chr7_4:61874041-61874060 None:intergenic 35.0%
GCACTTATATTTGGCATGTA+TGG - chr7_4:61874079-61874098 None:intergenic 35.0%
ATGGAATGATAAGTCTGTGT+AGG + chr7_4:61874123-61874142 Msa1168960:intron 35.0%
TGGAATGATAAGTCTGTGTA+GGG + chr7_4:61874124-61874143 Msa1168960:intron 35.0%
TGATGTTGTATTGAGTCTTG+TGG + chr7_4:61874234-61874253 Msa1168960:intron 35.0%
CTAATTTCTAAACCGTGAGT+CGG + chr7_4:61874293-61874312 Msa1168960:intron 35.0%
TACACAAGTGAGTGTTTACT+TGG + chr7_4:61874377-61874396 Msa1168960:intron 35.0%
ACACAAGTGAGTGTTTACTT+GGG + chr7_4:61874378-61874397 Msa1168960:intron 35.0%
! AAGTGACAGCTTTAGTTACA+AGG + chr7_4:61874405-61874424 Msa1168960:intron 35.0%
!! TCAAGGAGTATTATGTAAGC+TGG + chr7_4:61874453-61874472 Msa1168960:intron 35.0%
TTATGACAATCACTCACACA+TGG - chr7_4:61874552-61874571 None:intergenic 35.0%
TGAGGAGTCAGATTTAGTAA+AGG + chr7_4:61874805-61874824 Msa1168960:CDS 35.0%
GAGTCAGATTTAGTAAAGGT+GGG + chr7_4:61874809-61874828 Msa1168960:CDS 35.0%
ATCTGATCCATCATGATTAC+CGG - chr7_4:61874879-61874898 None:intergenic 35.0%
AAACTCTCAGATAACTCAAG+CGG + chr7_4:61874922-61874941 Msa1168960:CDS 35.0%
AGAAGGAAAAAGGAGAATTC+CGG + chr7_4:61874951-61874970 Msa1168960:CDS 35.0%
! TCTGCTTAACAACTTTTACC+CGG - chr7_4:61874973-61874992 None:intergenic 35.0%
AGTTGTTAAGCAGATCTTGT+CGG + chr7_4:61874979-61874998 Msa1168960:CDS 35.0%
AATTCAGCCAAAGTATGTCA+CGG - chr7_4:61875378-61875397 None:intergenic 35.0%
!! TGAAAGGCTTTTGGAGATAA+AGG + chr7_4:61875485-61875504 Msa1168960:CDS 35.0%
TTATTACAGTTGGACTGTAC+AGG - chr7_4:61875557-61875576 None:intergenic 35.0%
ATGAGGGGAAAAAATAGAGA+AGG + chr7_4:61875650-61875669 Msa1168960:three_prime_UTR 35.0%
TGAGGGGAAAAAATAGAGAA+GGG + chr7_4:61875651-61875670 Msa1168960:three_prime_UTR 35.0%
GGTGGAATTTATATGACACT+TGG + chr7_4:61875674-61875693 Msa1168960:three_prime_UTR 35.0%
! CTTGGTCTAAAATCAGCTAT+AGG + chr7_4:61875692-61875711 Msa1168960:three_prime_UTR 35.0%
GGTTGCGTATATTTCAACTG+AGG - chr7_4:61870359-61870378 None:intergenic 40.0%
!! GATGATGATGGTGGGTATAA+TGG - chr7_4:61870383-61870402 None:intergenic 40.0%
!! CTGCATAGGTTATGGTTTTG+TGG - chr7_4:61870536-61870555 None:intergenic 40.0%
AATGATGATCGTTGCTGCAT+AGG - chr7_4:61870550-61870569 None:intergenic 40.0%
ATGGGTAATATCTCAAGCAC+CGG + chr7_4:61870600-61870619 Msa1168960:CDS 40.0%
AATTGATGAGGTGCGATTTC+GGG - chr7_4:61870702-61870721 None:intergenic 40.0%
GAATTGATGAGGTGCGATTT+CGG - chr7_4:61870703-61870722 None:intergenic 40.0%
ATTGAGGATAATGCATGGGT+GGG - chr7_4:61870755-61870774 None:intergenic 40.0%
TATTGAGGATAATGCATGGG+TGG - chr7_4:61870756-61870775 None:intergenic 40.0%
!! TTGGTGGTGGATAATAACCA+GGG - chr7_4:61870785-61870804 None:intergenic 40.0%
!! ATTGGTGGTGGATAATAACC+AGG - chr7_4:61870786-61870805 None:intergenic 40.0%
! TGATGATGAGGCATAGGTAT+TGG - chr7_4:61870804-61870823 None:intergenic 40.0%
! TCCATATGAGGATGATGATG+AGG - chr7_4:61870816-61870835 None:intergenic 40.0%
GCTTTCTGATGCTCAACAAA+AGG - chr7_4:61870894-61870913 None:intergenic 40.0%
! AAACCAGGATTTTCCTCATC+AGG - chr7_4:61870969-61870988 None:intergenic 40.0%
GAAAACTAACCTCCCAGATA+CGG - chr7_4:61871021-61871040 None:intergenic 40.0%
! CAGGTTGAACTTGATGAACT+TGG + chr7_4:61871220-61871239 Msa1168960:intron 40.0%
CTTGATGAACTTGGTATGGT+AGG + chr7_4:61871229-61871248 Msa1168960:intron 40.0%
TTGTTTAAGAATGGATGGGG+AGG + chr7_4:61871372-61871391 Msa1168960:intron 40.0%
GGCATGTTAAAAGGAGAAAG+TGG + chr7_4:61871393-61871412 Msa1168960:intron 40.0%
!! AGACTGCCAAACTATTTTGG+AGG - chr7_4:61871422-61871441 None:intergenic 40.0%
! GGACTGTCTAAGCAAGTTTT+TGG + chr7_4:61871597-61871616 Msa1168960:intron 40.0%
TAGCACGATAGTCTTTCCAA+TGG - chr7_4:61871733-61871752 None:intergenic 40.0%
GGCCAAGTAAGCTAATTGAA+TGG + chr7_4:61872136-61872155 Msa1168960:intron 40.0%
GTGAAAGGTGACTACTAAAG+AGG + chr7_4:61872199-61872218 Msa1168960:intron 40.0%
GTAGCTAAAGGGAGAGAAAA+AGG + chr7_4:61872250-61872269 Msa1168960:intron 40.0%
AGTGAAAGGCGAATTAGGAA+GGG + chr7_4:61872328-61872347 Msa1168960:intron 40.0%
AACTCTTTAATGTGCATCGC+TGG - chr7_4:61872797-61872816 None:intergenic 40.0%
CGATGCACATTAAAGAGTTG+TGG + chr7_4:61872798-61872817 Msa1168960:intron 40.0%
! CCCCAGACAGCATTTAAAAT+AGG - chr7_4:61872915-61872934 None:intergenic 40.0%
! AAATGCTGTCTGGGGTATAT+TGG + chr7_4:61872920-61872939 Msa1168960:intron 40.0%
!! CTTTGCAAACACGTTTTAGG+AGG + chr7_4:61872981-61873000 Msa1168960:intron 40.0%
TCCTTTCTTTCTATGCACGA+AGG + chr7_4:61873137-61873156 Msa1168960:intron 40.0%
TCCTTCGTGCATAGAAAGAA+AGG - chr7_4:61873141-61873160 None:intergenic 40.0%
TGGGTGTTTAGATATAGGGA+CGG + chr7_4:61873555-61873574 Msa1168960:intron 40.0%
TGTTTAGATATAGGGACGGA+GGG + chr7_4:61873559-61873578 Msa1168960:intron 40.0%
TGAAAGTCATCCACAAGTTC+TGG + chr7_4:61873816-61873835 Msa1168960:intron 40.0%
!! CACAAATGCTTCTAAAGTCC+CGG + chr7_4:61874184-61874203 Msa1168960:intron 40.0%
CATTATCCTCCTTCGCATAT+AGG - chr7_4:61874216-61874235 None:intergenic 40.0%
CGACTCACGGTTTAGAAATT+AGG - chr7_4:61874295-61874314 None:intergenic 40.0%
TTAGGATAAGATCCGACTCA+CGG - chr7_4:61874308-61874327 None:intergenic 40.0%
CACAAGTGAGTGTTTACTTG+GGG + chr7_4:61874379-61874398 Msa1168960:intron 40.0%
GGAGTCAGATTTAGTAAAGG+TGG + chr7_4:61874808-61874827 Msa1168960:CDS 40.0%
TTTAGTAAAGGTGGGTGACA+TGG + chr7_4:61874817-61874836 Msa1168960:CDS 40.0%
GCTTGAGTTATCTGAGAGTT+TGG - chr7_4:61874923-61874942 None:intergenic 40.0%
GAAGGAAAAAGGAGAATTCC+GGG + chr7_4:61874952-61874971 Msa1168960:CDS 40.0%
TATGAGCTGCAGGAGATATA+TGG + chr7_4:61875016-61875035 Msa1168960:CDS 40.0%
CTGCAGGAGATATATGGTAT+TGG + chr7_4:61875022-61875041 Msa1168960:CDS 40.0%
AAATTCAGTGGAGAGTGATG+TGG + chr7_4:61875045-61875064 Msa1168960:CDS 40.0%
GATGTGGATGACAATGAACA+AGG + chr7_4:61875061-61875080 Msa1168960:CDS 40.0%
AATATACCATATGTCGGCAG+GGG - chr7_4:61875135-61875154 None:intergenic 40.0%
GAATATACCATATGTCGGCA+GGG - chr7_4:61875136-61875155 None:intergenic 40.0%
TGAATATACCATATGTCGGC+AGG - chr7_4:61875137-61875156 None:intergenic 40.0%
! TTTTTGCAGTGCATGTGTAG+TGG + chr7_4:61875405-61875424 Msa1168960:intron 40.0%
AAATCGGGCATCTATTTGTC+TGG - chr7_4:61875452-61875471 None:intergenic 40.0%
TCAACTGGTTGTCTGCAAAT+CGG - chr7_4:61875468-61875487 None:intergenic 40.0%
TTTGCAGACAACCAGTTGAA+AGG + chr7_4:61875469-61875488 Msa1168960:CDS 40.0%
! ACAACCAGTTGAAAGGCTTT+TGG + chr7_4:61875476-61875495 Msa1168960:CDS 40.0%
ATCTCCAAAAGCCTTTCAAC+TGG - chr7_4:61875483-61875502 None:intergenic 40.0%
!! AGGCTTTTGGAGATAAAGGT+AGG + chr7_4:61875489-61875508 Msa1168960:CDS 40.0%
!! GGCTTTTGGAGATAAAGGTA+GGG + chr7_4:61875490-61875509 Msa1168960:CDS 40.0%
TGGACTGTACAGGAAGTTTA+TGG - chr7_4:61875547-61875566 None:intergenic 40.0%
GGTTTCTCCCTCATTTATTC+TGG + chr7_4:61875619-61875638 Msa1168960:three_prime_UTR 40.0%
GAGGGGAAAAAATAGAGAAG+GGG + chr7_4:61875652-61875671 Msa1168960:three_prime_UTR 40.0%
AGGGGAAAAAATAGAGAAGG+GGG + chr7_4:61875653-61875672 Msa1168960:three_prime_UTR 40.0%
!! GATGATGGTGGGTATAATGG+AGG - chr7_4:61870380-61870399 None:intergenic 45.0%
!! TCTGTTGGGATGATGATGGT+GGG - chr7_4:61870391-61870410 None:intergenic 45.0%
!! TTCTGTTGGGATGATGATGG+TGG - chr7_4:61870392-61870411 None:intergenic 45.0%
GATCGTTGCTGCATAGGTTA+TGG - chr7_4:61870544-61870563 None:intergenic 45.0%
!! ATTTCGGGTTGTGGTGTTAC+CGG - chr7_4:61870687-61870706 None:intergenic 45.0%
CCAGGGTAAACGAATTGATG+AGG - chr7_4:61870714-61870733 None:intergenic 45.0%
CCTCATCAATTCGTTTACCC+TGG + chr7_4:61870711-61870730 Msa1168960:CDS 45.0%
!! GATAATGCATGGGTGGGTTA+GGG - chr7_4:61870749-61870768 None:intergenic 45.0%
!! TGATGAGGCATAGGTATTGG+TGG - chr7_4:61870801-61870820 None:intergenic 45.0%
! TGAGGATGATGATGAGGCAT+AGG - chr7_4:61870810-61870829 None:intergenic 45.0%
GCCTCATCATCATCCTCATA+TGG + chr7_4:61870812-61870831 Msa1168960:CDS 45.0%
ATCCTCATATGGATCCTGCT+TGG + chr7_4:61870823-61870842 Msa1168960:CDS 45.0%
TCCTCATATGGATCCTGCTT+GGG + chr7_4:61870824-61870843 Msa1168960:CDS 45.0%
! TGATGCTCAACAAAAGGTGC+AGG - chr7_4:61870888-61870907 None:intergenic 45.0%
TCACCTGATGAGGAAAATCC+TGG + chr7_4:61870963-61870982 Msa1168960:CDS 45.0%
!!! GCAAGTTTTTGGAACTGCAC+CGG + chr7_4:61871608-61871627 Msa1168960:intron 45.0%
TGCACAGAATCACATGGTTG+AGG + chr7_4:61871935-61871954 Msa1168960:intron 45.0%
GGTGACTACTAAAGAGGAAG+AGG + chr7_4:61872205-61872224 Msa1168960:intron 45.0%
GACTACTAAAGAGGAAGAGG+TGG + chr7_4:61872208-61872227 Msa1168960:intron 45.0%
AAGAGGTGGAGAGTAAGAAG+TGG + chr7_4:61872222-61872241 Msa1168960:intron 45.0%
TGGAGAGTAAGAAGTGGAGA+GGG + chr7_4:61872228-61872247 Msa1168960:intron 45.0%
AAGTGGAGAGGGTAGCTAAA+GGG + chr7_4:61872239-61872258 Msa1168960:intron 45.0%
GTTGCAGTGAAAGGCGAATT+AGG + chr7_4:61872323-61872342 Msa1168960:intron 45.0%
CAGTGAAAGGCGAATTAGGA+AGG + chr7_4:61872327-61872346 Msa1168960:intron 45.0%
AAAGGCGAATTAGGAAGGGA+TGG + chr7_4:61872332-61872351 Msa1168960:intron 45.0%
AAGGCGAATTAGGAAGGGAT+GGG + chr7_4:61872333-61872352 Msa1168960:intron 45.0%
TAGTGAGATTGCGTGTGAGT+TGG + chr7_4:61872421-61872440 Msa1168960:intron 45.0%
AGTGAGATTGCGTGTGAGTT+GGG + chr7_4:61872422-61872441 Msa1168960:intron 45.0%
CATGATTTCGCTGCTATGTG+CGG - chr7_4:61872833-61872852 None:intergenic 45.0%
ATAGTTTCGCAGGCGCTATT+AGG + chr7_4:61872862-61872881 Msa1168960:intron 45.0%
TAGTTTCGCAGGCGCTATTA+GGG + chr7_4:61872863-61872882 Msa1168960:intron 45.0%
TCGTAGCAACAAACAGCAGA+AGG - chr7_4:61873067-61873086 None:intergenic 45.0%
GGAAAGCAACAGAACAGAGA+AGG - chr7_4:61873120-61873139 None:intergenic 45.0%
! AGGATGCTGCTCTGTTTTGT+TGG + chr7_4:61873157-61873176 Msa1168960:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG - chr7_4:61873313-61873332 None:intergenic 45.0%
AGCAAAGGGGGGTTACATTA+AGG - chr7_4:61873314-61873333 None:intergenic 45.0%
GTGTTTAGATATAGGGACGG+AGG + chr7_4:61873558-61873577 Msa1168960:intron 45.0%
GTTAATCTCATATAGCGGCG+TGG - chr7_4:61873745-61873764 None:intergenic 45.0%
! AGTCATCCACAAGTTCTGGT+TGG + chr7_4:61873820-61873839 Msa1168960:intron 45.0%
ATTCAGCCAACCAGAACTTG+TGG - chr7_4:61873829-61873848 None:intergenic 45.0%
ATTCAAGTGCTACAACTGCG+AGG - chr7_4:61874163-61874182 None:intergenic 45.0%
!! CGGGACTTTAGAAGCATTTG+TGG - chr7_4:61874186-61874205 None:intergenic 45.0%
TTCGCATATAGGTTCATGCC+GGG - chr7_4:61874205-61874224 None:intergenic 45.0%
CTTCGCATATAGGTTCATGC+CGG - chr7_4:61874206-61874225 None:intergenic 45.0%
CATGAACCTATATGCGAAGG+AGG + chr7_4:61874207-61874226 Msa1168960:intron 45.0%
CTCTTTGCTCTCCCATATCA+AGG + chr7_4:61874436-61874455 Msa1168960:intron 45.0%
TACAGTCACAGGTGCAAGAT+GGG - chr7_4:61874717-61874736 None:intergenic 45.0%
TGCTGGAATTGTACAGTCAC+AGG - chr7_4:61874728-61874747 None:intergenic 45.0%
GTGACTGTACAATTCCAGCA+AGG + chr7_4:61874728-61874747 Msa1168960:CDS 45.0%
GTACAATTCCAGCAAGGTCT+TGG + chr7_4:61874734-61874753 Msa1168960:CDS 45.0%
CAGAAGTTTAGACAGCAAGC+TGG + chr7_4:61874758-61874777 Msa1168960:CDS 45.0%
TTTAGACAGCAAGCTGGAAC+TGG + chr7_4:61874764-61874783 Msa1168960:CDS 45.0%
TGTTTACCCTCTAGCAGTGA+AGG + chr7_4:61874841-61874860 Msa1168960:CDS 45.0%
GCATCATCCGGTAATCATGA+TGG + chr7_4:61874869-61874888 Msa1168960:CDS 45.0%
AACTCAAGCGGTGTTTGAGA+AGG + chr7_4:61874934-61874953 Msa1168960:CDS 45.0%
GCGGTGTTTGAGAAGGAAAA+AGG + chr7_4:61874941-61874960 Msa1168960:CDS 45.0%
AAGCAGATCTTGTCGGTGAA+TGG + chr7_4:61874986-61875005 Msa1168960:CDS 45.0%
TCTTGTCGGTGAATGGAATG+CGG + chr7_4:61874993-61875012 Msa1168960:CDS 45.0%
!! CATGTGTAGTGGATGTGCAA+AGG + chr7_4:61875416-61875435 Msa1168960:CDS 45.0%
CAACTGGTTGTCTGCAAATC+GGG - chr7_4:61875467-61875486 None:intergenic 45.0%
GGAAAAAATAGAGAAGGGGG+TGG + chr7_4:61875656-61875675 Msa1168960:three_prime_UTR 45.0%
!! AATAATTTATTAAAATAGAA+AGG - chr7_4:61870453-61870472 None:intergenic 5.0%
!! GGTAATATCTCAAGCACCGG+CGG + chr7_4:61870603-61870622 Msa1168960:CDS 50.0%
! GGATAATGCATGGGTGGGTT+AGG - chr7_4:61870750-61870769 None:intergenic 50.0%
!! TGAGGCATAGGTATTGGTGG+TGG - chr7_4:61870798-61870817 None:intergenic 50.0%
ACCCAAGCAGGATCCATATG+AGG - chr7_4:61870828-61870847 None:intergenic 50.0%
TGGATCCTGCTTGGGTTTCT+CGG + chr7_4:61870832-61870851 Msa1168960:CDS 50.0%
! TAGTACCGAGAAACCCAAGC+AGG - chr7_4:61870840-61870859 None:intergenic 50.0%
GTTTCTCGGTACTACCCTTG+TGG + chr7_4:61870846-61870865 Msa1168960:CDS 50.0%
!! AGGTGCAGGTTGATTCACCA+CGG - chr7_4:61870874-61870893 None:intergenic 50.0%
ACCTTTGATGCTGCCGTATC+TGG + chr7_4:61871005-61871024 Msa1168960:CDS 50.0%
CCTTTGATGCTGCCGTATCT+GGG + chr7_4:61871006-61871025 Msa1168960:CDS 50.0%
! GGATGGGGAGGCATGTTAAA+AGG + chr7_4:61871384-61871403 Msa1168960:intron 50.0%
ATGTTGTTCGCGGTATTCGG+AGG + chr7_4:61871455-61871474 Msa1168960:intron 50.0%
TCCTTGACATGTGTCAACGC+CGG - chr7_4:61871630-61871649 None:intergenic 50.0%
CGCTCATACTGACGTGCATA+TGG + chr7_4:61872115-61872134 Msa1168960:intron 50.0%
GTGGAGAGTAAGAAGTGGAG+AGG + chr7_4:61872227-61872246 Msa1168960:intron 50.0%
GAAGTGGAGAGGGTAGCTAA+AGG + chr7_4:61872238-61872257 Msa1168960:intron 50.0%
!! GGTTGGTGAGTTGCAGTGAA+AGG + chr7_4:61872314-61872333 Msa1168960:intron 50.0%
AGGCGAATTAGGAAGGGATG+GGG + chr7_4:61872334-61872353 Msa1168960:intron 50.0%
GCGGCTGATTGGAGAAAGAA+GGG + chr7_4:61872363-61872382 Msa1168960:intron 50.0%
CGGCTGATTGGAGAAAGAAG+GGG + chr7_4:61872364-61872383 Msa1168960:intron 50.0%
TGTCAATCGCGCTGCTATAG+CGG + chr7_4:61872748-61872767 Msa1168960:intron 50.0%
GCCTGCGAAACTATCGAACA+GGG - chr7_4:61872856-61872875 None:intergenic 50.0%
AGCGTTTCACAGGACCAAGA+AGG - chr7_4:61873043-61873062 None:intergenic 50.0%
!! AGCAGAAGGAAGCGTTTCAC+AGG - chr7_4:61873053-61873072 None:intergenic 50.0%
AGAAGGACACTTCACGCCAA+AGG - chr7_4:61873103-61873122 None:intergenic 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr7_4:61873305-61873324 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr7_4:61873309-61873328 None:intergenic 50.0%
CGGCATGAACCTATATGCGA+AGG + chr7_4:61874204-61874223 Msa1168960:intron 50.0%
!! GCAAGATGGGTTACCTTGGT+CGG - chr7_4:61874704-61874723 None:intergenic 50.0%
!! AGGTGCAAGATGGGTTACCT+TGG - chr7_4:61874708-61874727 None:intergenic 50.0%
GTACAGTCACAGGTGCAAGA+TGG - chr7_4:61874718-61874737 None:intergenic 50.0%
ACTTCTGTCCAAGACCTTGC+TGG - chr7_4:61874745-61874764 None:intergenic 50.0%
CATCTGCCTTCACTGCTAGA+GGG - chr7_4:61874850-61874869 None:intergenic 50.0%
GTGAAGGCAGATGCATCATC+CGG + chr7_4:61874857-61874876 Msa1168960:CDS 50.0%
TCCGAGTCCGTGACATACTT+TGG + chr7_4:61875368-61875387 Msa1168960:intron 50.0%
GCCAAAGTATGTCACGGACT+CGG - chr7_4:61875372-61875391 None:intergenic 50.0%
GGAGATAAAGGTAGGGACTG+AGG + chr7_4:61875497-61875516 Msa1168960:CDS 50.0%
!! TGAGGTGCGATTTCGGGTTG+TGG - chr7_4:61870696-61870715 None:intergenic 55.0%
!! TGCATGGGTGGGTTAGGGTA+CGG - chr7_4:61870744-61870763 None:intergenic 55.0%
GATTCACCACGGGTCCACAA+GGG - chr7_4:61870863-61870882 None:intergenic 55.0%
TGATTCACCACGGGTCCACA+AGG - chr7_4:61870864-61870883 None:intergenic 55.0%
!! GGTGCAGGTTGATTCACCAC+GGG - chr7_4:61870873-61870892 None:intergenic 55.0%
CCCAGATACGGCAGCATCAA+AGG - chr7_4:61871009-61871028 None:intergenic 55.0%
TTGATGCTGCCGTATCTGGG+AGG + chr7_4:61871009-61871028 Msa1168960:CDS 55.0%
TTGTTCGCGGTATTCGGAGG+TGG + chr7_4:61871458-61871477 Msa1168960:intron 55.0%
!! ACCGGCGTTGACACATGTCA+AGG + chr7_4:61871626-61871645 Msa1168960:intron 55.0%
GGCGAATTAGGAAGGGATGG+GGG + chr7_4:61872335-61872354 Msa1168960:intron 55.0%
TTAGGAAGGGATGGGGGAGA+TGG + chr7_4:61872341-61872360 Msa1168960:intron 55.0%
GGCGGCTGATTGGAGAAAGA+AGG + chr7_4:61872362-61872381 Msa1168960:intron 55.0%
!! GCTGCTATAGCGGACAATCG+CGG + chr7_4:61872758-61872777 Msa1168960:intron 55.0%
!! CTGCTATAGCGGACAATCGC+GGG + chr7_4:61872759-61872778 Msa1168960:intron 55.0%
GCCCTGTTCGATAGTTTCGC+AGG + chr7_4:61872852-61872871 Msa1168960:intron 55.0%
CGCCTGCGAAACTATCGAAC+AGG - chr7_4:61872857-61872876 None:intergenic 55.0%
AGAAGGATGTGTCGCGGTCA+AGG - chr7_4:61873026-61873045 None:intergenic 55.0%
TGACCGCGACACATCCTTCT+TGG + chr7_4:61873026-61873045 Msa1168960:intron 55.0%
GGACCAAGAAGGATGTGTCG+CGG - chr7_4:61873032-61873051 None:intergenic 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr7_4:61873306-61873325 None:intergenic 55.0%
GCATCTGCCTTCACTGCTAG+AGG - chr7_4:61874851-61874870 None:intergenic 55.0%
TGGAATGCGGTATGAGCTGC+AGG + chr7_4:61875006-61875025 Msa1168960:CDS 55.0%
GGGTGAACAATTGTGTCGCG+AGG - chr7_4:61875115-61875134 None:intergenic 55.0%
TGTTCACCCCTGCCGACATA+TGG + chr7_4:61875126-61875145 Msa1168960:CDS 55.0%
!! TTACCGGAGGTGGTGGTGGT+GGG - chr7_4:61870671-61870690 None:intergenic 60.0%
!! TGTGGTGTTACCGGAGGTGG+TGG - chr7_4:61870678-61870697 None:intergenic 60.0%
!! GGTTGTGGTGTTACCGGAGG+TGG - chr7_4:61870681-61870700 None:intergenic 60.0%
!! TCGGGTTGTGGTGTTACCGG+AGG - chr7_4:61870684-61870703 None:intergenic 60.0%
GTACTACCCTTGTGGACCCG+TGG + chr7_4:61870854-61870873 Msa1168960:CDS 60.0%
! GCGTGTGAGTTGGGCCGAAA+AGG + chr7_4:61872431-61872450 Msa1168960:intron 60.0%
CTGCATCCTCACACCGACCA+AGG + chr7_4:61874688-61874707 Msa1168960:CDS 60.0%
GGGTTACCTTGGTCGGTGTG+AGG - chr7_4:61874697-61874716 None:intergenic 60.0%
TCGACGACGGTTGTGTCCGC+CGG - chr7_4:61870622-61870641 None:intergenic 65.0%
! AAGCGGTGGCGTGTCGACGA+CGG - chr7_4:61870635-61870654 None:intergenic 65.0%
TGGGTGAGTCCGTCGGGAAG+CGG - chr7_4:61870652-61870671 None:intergenic 65.0%
!! TGGTGGTGGGTGAGTCCGTC+GGG - chr7_4:61870658-61870677 None:intergenic 65.0%
!! GTGGTGGTGGGTGAGTCCGT+CGG - chr7_4:61870659-61870678 None:intergenic 65.0%
TCACCCACCACCACCACCTC+CGG + chr7_4:61870665-61870684 Msa1168960:CDS 65.0%
!! GTTACCGGAGGTGGTGGTGG+TGG - chr7_4:61870672-61870691 None:intergenic 65.0%
! GGTGTTACCGGAGGTGGTGG+TGG - chr7_4:61870675-61870694 None:intergenic 65.0%
TAGGGTACGGTGCGGCACCA+GGG - chr7_4:61870731-61870750 None:intergenic 65.0%
TTAGGGTACGGTGCGGCACC+AGG - chr7_4:61870732-61870751 None:intergenic 65.0%
!! GGGTGGGTTAGGGTACGGTG+CGG - chr7_4:61870739-61870758 None:intergenic 65.0%
GGAAGGGATGGGGGAGATGG+CGG + chr7_4:61872344-61872363 Msa1168960:intron 65.0%
! TGGGGGAGATGGCGGCTGAT+TGG + chr7_4:61872352-61872371 Msa1168960:intron 65.0%
GACACGCCACCGCTTCCCGA+CGG + chr7_4:61870640-61870659 Msa1168960:CDS 70.0%
GTGAGTCCGTCGGGAAGCGG+TGG - chr7_4:61870649-61870668 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 61870246 61875776 61870246 ID=Msa1168960;Name=Msa1168960
chr7_4 mRNA 61870246 61875776 61870246 ID=Msa1168960-mRNA-1;Parent=Msa1168960;Name=Msa1168960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=354|1|1|1|1|1|3|252|345
chr7_4 exon 61870246 61871030 61870246 ID=Msa1168960-mRNA-1:exon:19517;Parent=Msa1168960-mRNA-1
chr7_4 exon 61874652 61875147 61874652 ID=Msa1168960-mRNA-1:exon:19518;Parent=Msa1168960-mRNA-1
chr7_4 exon 61875414 61875776 61875414 ID=Msa1168960-mRNA-1:exon:19519;Parent=Msa1168960-mRNA-1
chr7_4 five_prime_UTR 61870246 61870599 61870246 ID=Msa1168960-mRNA-1:five_prime_utr;Parent=Msa1168960-mRNA-1
chr7_4 CDS 61870600 61871030 61870600 ID=Msa1168960-mRNA-1:cds;Parent=Msa1168960-mRNA-1
chr7_4 CDS 61874652 61875147 61874652 ID=Msa1168960-mRNA-1:cds;Parent=Msa1168960-mRNA-1
chr7_4 CDS 61875414 61875524 61875414 ID=Msa1168960-mRNA-1:cds;Parent=Msa1168960-mRNA-1
chr7_4 three_prime_UTR 61875525 61875776 61875525 ID=Msa1168960-mRNA-1:three_prime_utr;Parent=Msa1168960-mRNA-1
Gene Sequence

>Msa1168960

ATGGGTAATATCTCAAGCACCGGCGGACACAACCGTCGTCGACACGCCACCGCTTCCCGACGGACTCACCCACCACCACCACCTCCGGTAACACCACAACCCGAAATCGCACCTCATCAATTCGTTTACCCTGGTGCCGCACCGTACCCTAACCCACCCATGCATTATCCTCAATATCATTACCCTGGTTATTATCCACCACCAATACCTATGCCTCATCATCATCCTCATATGGATCCTGCTTGGGTTTCTCGGTACTACCCTTGTGGACCCGTGGTGAATCAACCTGCACCTTTTGTTGAGCATCAGAAAGCTGTTACTATTAGAAATGATGTTAATATTAAGAAGGAGACCATTGTAATTTCACCTGATGAGGAAAATCCTGGTTTTTTCCTTGTTTCGTTTACCTTTGATGCTGCCGTATCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGTAACCCATCTTGCACCTGTGACTGTACAATTCCAGCAAGGTCTTGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTAGTAAAGGTGGGTGACATGGATGTTTACCCTCTAGCAGTGAAGGCAGATGCATCATCCGGTAATCATGATGGATCAGATGAAACTGAGACATCTAGTAAACCAAACTCTCAGATAACTCAAGCGGTGTTTGAGAAGGAAAAAGGAGAATTCCGGGTAAAAGTTGTTAAGCAGATCTTGTCGGTGAATGGAATGCGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGACAATGAACAAGGAAAAGAGTGTGTGATCTGCTTGTCAGAACCTCGCGACACAATTGTTCACCCCTGCCGACATATGTGCATGTGTAGTGGATGTGCAAAGGTATTAAGATTCCAGACAAATAGATGCCCGATTTGCAGACAACCAGTTGAAAGGCTTTTGGAGATAAAGGTAGGGACTGAGGAGTGA
Protein sequence

>Msa1168960

MGNISSTGGHNRRRHATASRRTHPPPPPPVTPQPEIAPHQFVYPGAAPYPNPPMHYPQYHYPGYYPPPIPMPHHHPHMDPAWVSRYYPCGPVVNQPAPFVEHQKAVTIRNDVNIKKETIVISPDEENPGFFLVSFTFDAAVSGSITIFFFAKEDEGCILTPTKVTHLAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLVKVGDMDVYPLAVKADASSGNHDGSDETETSSKPNSQITQAVFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESDVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTEE*