AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007620 MtrunA17_Chr7g0217971 87.175 616 55 1 1 616 1 592 0.0 1071
Msa1007620 MtrunA17_Chr5g0427901 79.777 628 115 2 1 616 1 628 0.0 1032
Msa1007620 MtrunA17_Chr7g0223801 79.708 616 124 1 1 616 1 615 0.0 1020
Msa1007620 MtrunA17_Chr7g0221661 77.162 613 139 1 1 612 1 613 0.0 987
Msa1007620 MtrunA17_Chr2g0298851 77.670 618 134 4 1 615 1 617 0.0 985
Msa1007620 MtrunA17_Chr2g0293581 74.152 619 156 4 1 615 1 619 0.0 952
Msa1007620 MtrunA17_Chr4g0040931 74.959 611 151 2 1 609 1 611 0.0 945
Msa1007620 MtrunA17_Chr7g0223721 73.744 617 160 2 1 615 1 617 0.0 943
Msa1007620 MtrunA17_Chr7g0233311 72.816 618 165 2 1 615 1 618 0.0 936
Msa1007620 MtrunA17_Chr8g0390821 71.343 670 123 7 1 616 1 655 0.0 931
Msa1007620 MtrunA17_Chr2g0298861 71.746 630 164 4 1 616 1 630 0.0 929
Msa1007620 MtrunA17_Chr7g0225671 74.146 615 154 4 3 615 12 623 0.0 929
Msa1007620 MtrunA17_Chr7g0223851 73.582 617 161 2 1 615 10 626 0.0 925
Msa1007620 MtrunA17_Chr7g0223821 72.006 618 166 3 1 612 1 617 0.0 893
Msa1007620 MtrunA17_Chr7g0223821 57.143 84 33 1 532 612 620 703 1.20e-18 90.1
Msa1007620 MtrunA17_Chr2g0287631 72.052 619 170 3 1 616 1 619 0.0 893
Msa1007620 MtrunA17_Chr7g0223831 70.894 615 147 5 1 612 1 586 0.0 878
Msa1007620 MtrunA17_Chr4g0012541 70.340 617 172 3 1 615 1 608 0.0 877
Msa1007620 MtrunA17_Chr7g0233301 69.579 618 154 3 1 615 1 587 0.0 876
Msa1007620 MtrunA17_Chr7g0215261 70.130 616 145 5 1 612 1 581 0.0 868
Msa1007620 MtrunA17_Chr8g0350731 67.270 608 199 0 1 608 29 636 0.0 860
Msa1007620 MtrunA17_Chr7g0223711 65.574 610 209 1 1 609 1 610 0.0 851
Msa1007620 MtrunA17_Chr7g0228281 69.368 617 142 5 1 615 62 633 0.0 849
Msa1007620 MtrunA17_Chr7g0223621 66.069 613 208 0 1 613 1 613 0.0 846
Msa1007620 MtrunA17_Chr7g0223751 64.658 614 217 0 1 614 1 614 0.0 840
Msa1007620 MtrunA17_Chr7g0223031 66.667 606 202 0 1 606 1 606 0.0 838
Msa1007620 MtrunA17_Chr7g0223741 67.677 594 191 1 1 593 1 594 0.0 837
Msa1007620 MtrunA17_Chr7g0223781 66.232 613 204 2 1 612 1 611 0.0 833
Msa1007620 MtrunA17_Chr7g0223181 65.802 617 206 4 1 614 1 615 0.0 833
Msa1007620 MtrunA17_Chr7g0223731 65.472 614 212 0 1 614 1 614 0.0 831
Msa1007620 MtrunA17_Chr7g0262821 65.478 617 208 4 1 614 1 615 0.0 824
Msa1007620 MtrunA17_Chr7g0223291 64.992 617 211 4 1 614 1 615 0.0 824
Msa1007620 MtrunA17_Chr4g0031301 64.992 617 211 4 1 614 1 615 0.0 820
Msa1007620 MtrunA17_Chr7g0223701 63.754 618 215 3 1 609 1 618 0.0 819
Msa1007620 MtrunA17_Chr4g0031321 64.830 617 212 4 1 614 1 615 0.0 816
Msa1007620 MtrunA17_Chr4g0073741 63.857 617 217 5 1 614 1 614 0.0 811
Msa1007620 MtrunA17_Chr7g0223631 65.189 609 198 2 1 609 1 595 0.0 808
Msa1007620 MtrunA17_Chr7g0248131 64.007 614 216 4 1 609 1 614 0.0 802
Msa1007620 MtrunA17_Chr7g0248151 64.668 617 215 2 1 614 1 617 0.0 801
Msa1007620 MtrunA17_Chr2g0296391 72.538 528 143 2 1 526 1 528 0.0 798
Msa1007620 MtrunA17_Chr2g0331381 69.832 537 101 4 10 546 7 482 0.0 754
Msa1007620 MtrunA17_Chr2g0293601 69.750 519 121 3 1 517 1 485 0.0 739
Msa1007620 MtrunA17_Chr1g0166551 61.438 612 123 4 6 615 2 502 0.0 728
Msa1007620 MtrunA17_Chr7g0223541 63.469 542 197 1 74 614 31 572 0.0 718
Msa1007620 MtrunA17_Chr7g0223681 65.076 524 183 0 91 614 2 525 0.0 703
Msa1007620 MtrunA17_Chr6g0462681 56.796 618 263 3 1 616 1 616 0.0 702
Msa1007620 MtrunA17_Chr6g0462601 56.818 616 262 3 1 614 1 614 0.0 693
Msa1007620 MtrunA17_Chr6g0462711 56.260 615 261 4 9 616 10 623 0.0 667
Msa1007620 MtrunA17_Chr2g0284681 54.634 615 254 7 6 611 5 603 0.0 661
Msa1007620 MtrunA17_Chr2g0293561 78.400 375 81 0 1 375 1 375 0.0 636
Msa1007620 MtrunA17_Chr6g0462771 54.309 615 272 4 9 616 9 621 0.0 632
Msa1007620 MtrunA17_Chr6g0462641 52.951 627 278 6 1 616 1 621 0.0 631
Msa1007620 MtrunA17_Chr8g0388761 54.839 589 255 8 7 590 36 618 0.0 629
Msa1007620 MtrunA17_Chr8g0388671 54.839 589 255 8 7 590 36 618 0.0 628
Msa1007620 MtrunA17_Chr6g0462611 54.228 544 247 2 74 616 22 564 0.0 588
Msa1007620 MtrunA17_Chr2g0299921 70.707 396 107 3 3 398 1023 1409 0.0 570
Msa1007620 MtrunA17_Chr2g0299921 68.782 394 118 3 3 395 1407 1796 4.34e-171 531
Msa1007620 MtrunA17_Chr2g0293271 63.387 437 90 3 21 457 43 409 0.0 547
Msa1007620 MtrunA17_Chr2g0299821 61.814 419 151 3 1 412 1 417 0.0 532
Msa1007620 MtrunA17_Chr2g0299821 51.613 93 36 3 453 536 390 482 1.45e-17 85.9
Msa1007620 MtrunA17_Chr2g0299851 67.436 390 123 2 1 390 1030 1415 4.89e-179 545
Msa1007620 MtrunA17_Chr2g0299791 67.095 389 124 2 1 389 1034 1418 2.47e-176 538
Msa1007620 MtrunA17_Chr6g0462861 47.049 627 291 12 6 616 6 607 5.04e-175 512
Msa1007620 MtrunA17_Chr2g0299881 65.051 392 129 3 2 389 1031 1418 7.98e-171 525
Msa1007620 MtrunA17_Chr2g0299881 60.606 66 22 1 185 250 1414 1475 4.19e-16 82.4
Msa1007620 MtrunA17_Chr1g0151991 77.663 291 65 0 1 291 1 291 1.81e-170 486
Msa1007620 MtrunA17_Chr7g0245521 80.586 273 53 0 1 273 1 273 4.07e-165 472
Msa1007620 MtrunA17_Chr2g0279901 44.884 606 303 14 1 594 43 629 2.00e-160 475
Msa1007620 MtrunA17_Chr4g0049501 44.613 594 300 14 10 594 54 627 1.64e-155 462
Msa1007620 MtrunA17_Chr7g0223761 61.497 374 101 3 244 615 6 338 4.95e-155 449
Msa1007620 MtrunA17_Chr2g0277021 45.893 560 281 11 8 560 70 614 2.72e-148 445
Msa1007620 MtrunA17_Chr1g0152001 70.946 296 84 2 315 609 1 295 7.85e-145 422
Msa1007620 MtrunA17_Chr7g0245531 67.524 311 100 1 305 614 2 312 2.39e-144 421
Msa1007620 MtrunA17_Chr1g0188611 60.606 297 108 3 322 616 1 290 2.04e-109 330
Msa1007620 MtrunA17_Chr1g0188601 78.534 191 41 0 92 282 1 191 1.00e-108 325
Msa1007620 MtrunA17_Chr7g0223671 72.487 189 52 0 74 262 8 196 8.04e-101 305
Msa1007620 MtrunA17_Chr6g0462631 50.779 321 109 5 100 416 22 297 6.18e-97 298
Msa1007620 MtrunA17_Chr6g0462751 48.127 347 120 4 67 410 12 301 2.81e-96 297
Msa1007620 MtrunA17_Chr7g0223771 77.778 153 34 0 93 245 1 153 3.09e-83 258
Msa1007620 MtrunA17_Chr5g0394391 35.294 510 306 12 9 502 29 530 4.12e-80 263
Msa1007620 MtrunA17_Chr7g0245541 62.312 199 74 1 417 614 1 199 1.37e-78 247
Msa1007620 MtrunA17_Chr4g0046881 78.723 141 27 1 135 275 14 151 2.34e-74 234
Msa1007620 MtrunA17_Chr4g0004331 32.334 467 285 8 10 450 4 465 3.17e-73 251
Msa1007620 MtrunA17_Chr2g0331901 33.030 439 269 8 10 431 4 434 1.19e-71 247
Msa1007620 MtrunA17_Chr6g0462791 63.068 176 64 1 108 283 1 175 2.55e-71 228
Msa1007620 MtrunA17_Chr5g0444001 33.100 429 275 7 10 431 4 427 2.09e-69 234
Msa1007620 MtrunA17_Chr7g0223861 78.626 131 28 0 78 208 4 134 1.72e-68 218
Msa1007620 MtrunA17_Chr3g0098761 31.429 420 282 5 10 428 4 418 9.30e-66 229
Msa1007620 MtrunA17_Chr3g0120101 31.377 443 277 8 12 430 29 468 1.49e-61 219
Msa1007620 MtrunA17_Chr4g0064621 32.752 516 307 15 9 495 140 644 3.12e-59 210
Msa1007620 MtrunA17_Chr6g0481391 73.770 122 29 1 38 159 13 131 2.87e-56 186
Msa1007620 MtrunA17_Chr4g0060241 29.783 507 314 16 10 495 21 506 1.43e-50 183
Msa1007620 MtrunA17_Chr6g0462701 51.462 171 59 1 100 270 22 168 4.93e-49 168
Msa1007620 MtrunA17_Chr5g0394221 37.884 293 165 8 300 586 70 351 2.03e-48 172
Msa1007620 MtrunA17_Chr4g0046871 80.000 100 20 0 336 435 6 105 1.66e-47 162
Msa1007620 MtrunA17_Chr6g0462691 55.634 142 62 1 322 462 1 142 7.10e-45 157
Msa1007620 MtrunA17_Chr6g0481381 77.778 99 21 1 514 611 75 173 5.59e-42 150
Msa1007620 MtrunA17_Chr6g0481381 83.784 74 12 0 176 249 1 74 8.85e-36 132
Msa1007620 MtrunA17_Chr5g0442171 32.827 329 199 9 170 486 1 319 5.93e-42 154
Msa1007620 MtrunA17_Chr7g0223791 74.725 91 23 0 480 570 89 179 1.62e-40 145
Msa1007620 MtrunA17_Chr7g0223791 70.000 80 16 3 56 135 18 89 3.12e-27 108
Msa1007620 MtrunA17_Chr5g0394231 36.283 226 93 4 74 298 5 180 2.44e-39 142
Msa1007620 MtrunA17_Chr7g0223691 78.082 73 16 0 1 73 1 73 3.69e-37 132
Msa1007620 MtrunA17_Chr1g0188591 82.192 73 13 0 1 73 1 73 2.90e-36 130
Msa1007620 MtrunA17_Chr7g0223871 57.480 127 53 1 490 615 7 133 1.03e-35 131
Msa1007620 MtrunA17_Chr7g0223881 77.215 79 17 1 284 362 5 82 1.77e-32 120
Msa1007620 MtrunA17_Chr6g0462621 69.863 73 20 1 1 73 1 71 4.37e-28 107
Msa1007620 MtrunA17_Chr7g0223661 42.241 116 24 1 315 430 1 73 3.48e-20 85.5
Msa1007620 MtrunA17_Chr7g0221651 47.619 84 44 0 215 298 1 84 5.02e-20 85.1
Msa1007620 MtrunA17_Chr2g0284661 54.217 83 37 1 368 449 61 143 3.55e-19 84.3
Msa1007620 MtrunA17_Chr6g0462801 62.121 66 20 1 322 382 1 66 6.88e-19 81.3
Msa1007620 MtrunA17_Chr2g0299891 72.093 43 12 0 315 357 1 43 3.47e-16 73.6
Msa1007620 MtrunA17_Chr4g0064651 41.758 91 51 2 398 486 30 120 3.36e-15 72.4
Msa1007620 MtrunA17_Chr5g0442161 32.026 153 97 4 9 157 28 177 9.07e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007620 AT3G12580.1 65.478 617 208 4 1 614 1 615 0.0 829
Msa1007620 AT5G02500.1 64.506 617 214 4 1 614 1 615 0.0 819
Msa1007620 AT5G02490.1 64.019 617 217 4 1 614 1 615 0.0 809
Msa1007620 AT3G09440.1 64.344 617 215 4 1 614 1 615 0.0 806
Msa1007620 AT3G09440.4 64.344 617 215 4 1 614 1 615 0.0 806
Msa1007620 AT3G09440.2 64.344 617 215 4 1 614 1 615 0.0 806
Msa1007620 AT3G09440.3 64.344 617 215 4 1 614 1 615 0.0 806
Msa1007620 AT1G56410.1 64.668 617 211 5 1 614 1 613 0.0 801
Msa1007620 AT1G16030.1 62.075 617 228 5 1 614 1 614 0.0 788
Msa1007620 AT5G28540.1 54.173 611 269 8 7 612 35 639 0.0 641
Msa1007620 AT5G42020.3 54.173 611 269 8 7 612 40 644 0.0 640
Msa1007620 AT5G42020.1 54.173 611 269 8 7 612 35 639 0.0 640
Msa1007620 AT5G02500.2 74.036 389 99 1 1 389 1 387 0.0 615
Msa1007620 AT5G02500.2 35.000 100 65 0 515 614 386 485 1.91e-11 67.4
Msa1007620 AT1G09080.2 53.420 614 275 8 7 616 40 646 0.0 613
Msa1007620 AT1G09080.1 53.420 614 275 8 7 616 50 656 0.0 612
Msa1007620 AT5G42020.2 49.672 610 243 9 7 612 35 584 0.0 555
Msa1007620 AT5G09590.1 46.447 577 284 14 10 579 60 618 4.41e-156 464
Msa1007620 AT4G37910.1 45.172 580 289 13 10 580 55 614 2.50e-150 450
Msa1007620 AT4G37910.2 45.172 580 289 13 10 580 55 614 2.50e-150 450
Msa1007620 AT4G24280.1 45.536 560 283 11 8 560 79 623 4.50e-148 445
Msa1007620 AT5G49910.1 45.714 560 282 11 8 560 79 623 6.56e-148 445
Msa1007620 AT1G79930.2 32.432 481 286 9 10 456 4 479 1.57e-77 262
Msa1007620 AT1G79930.1 32.432 481 286 9 10 456 4 479 3.07e-77 262
Msa1007620 AT1G79920.3 31.022 548 313 11 10 523 4 520 3.59e-77 260
Msa1007620 AT1G79920.2 31.022 548 313 11 10 523 4 520 3.59e-77 260
Msa1007620 AT1G79920.4 31.022 548 313 11 10 523 4 520 3.59e-77 260
Msa1007620 AT1G79920.1 31.022 548 313 11 10 523 4 520 4.99e-77 260
Msa1007620 AT1G11660.4 31.349 504 313 11 10 495 4 492 2.76e-72 248
Msa1007620 AT1G11660.3 31.349 504 313 11 10 495 4 492 2.76e-72 248
Msa1007620 AT1G11660.1 31.349 504 313 11 10 495 4 492 2.76e-72 248
Msa1007620 AT2G32120.1 34.047 514 304 13 9 506 30 524 2.92e-71 240
Msa1007620 AT2G32120.2 34.047 514 304 13 9 506 30 524 2.92e-71 240
Msa1007620 AT1G11660.2 31.692 467 288 10 47 495 2 455 4.32e-66 230
Msa1007620 AT4G16660.2 28.953 487 319 7 6 469 47 529 1.78e-60 217
Msa1007620 AT4G16660.1 28.953 487 319 7 6 469 23 505 2.08e-60 216

Find 115 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCATTCAAGGTCATTTC+TGG 0.133232 7_1:-7236790 Msa1007620:CDS
ACATCTTGCAGCACCAATTT+TGG 0.181506 7_1:+7235887 None:intergenic
TGCAATAGTTGTTGTACTTT+TGG 0.196868 7_1:+7236019 None:intergenic
CACGGTAATTCTCAGCTTCT+TGG 0.258316 7_1:+7235501 None:intergenic
TTAGATGCAAAGAGGTTAAT+TGG 0.272649 7_1:-7236856 Msa1007620:intron
TGCTTTACTATCAATGAAAA+TGG 0.291437 7_1:-7235629 Msa1007620:CDS
CCGGATGAGGCTGTTGCTTA+TGG 0.312351 7_1:-7235956 Msa1007620:CDS
AGTATGCTCCAACTCATTAT+AGG 0.328633 7_1:-7235257 Msa1007620:CDS
TTGTCTCGCTGATGCCAAAA+TGG 0.348246 7_1:-7236092 Msa1007620:CDS
GATGTTGCTCCTTTGTCTCT+TGG 0.351484 7_1:-7235869 Msa1007620:CDS
TGCTGAAGAAATCTCATCTA+TGG 0.352104 7_1:-7236710 Msa1007620:CDS
CGATAAGGTCTTTCAAGTTA+AGG 0.355272 7_1:-7236410 Msa1007620:CDS
GAATGACAAACCCTTGATTT+CGG 0.363835 7_1:-7236764 Msa1007620:CDS
TTCATCTTTGACTTGGGTGG+TGG 0.368513 7_1:-7236463 Msa1007620:CDS
GCATACTCTCAAGGTCCTTC+AGG 0.371494 7_1:+7235273 None:intergenic
CTTCGATGGTGGCTGAAGTT+TGG 0.371612 7_1:+7235750 None:intergenic
GAACATCTATTTCACTCTGT+TGG 0.372500 7_1:+7235306 None:intergenic
ATAGATGCTGGTGCTATTGC+TGG 0.376178 7_1:-7236580 Msa1007620:CDS
GAGGTAGATTCTTTATTTCA+AGG 0.387226 7_1:-7236202 Msa1007620:CDS
CATATTGATTTCCTCAAACT+TGG 0.390481 7_1:+7236150 None:intergenic
ATAGTAAAGCATACCTCTAA+AGG 0.391561 7_1:+7235641 None:intergenic
AGACCTTATCGTTAATTGTA+AGG 0.410835 7_1:+7236422 None:intergenic
CGCCGTTCTCAACCTCCTTA+AGG 0.413742 7_1:+7236273 None:intergenic
AACATCTATTTCACTCTGTT+GGG 0.414811 7_1:+7235307 None:intergenic
AAAAGTACAACAACTATTGC+AGG 0.418027 7_1:-7236017 Msa1007620:CDS
GGGGAGAGGACATTGATAAT+AGG 0.425160 7_1:-7236363 Msa1007620:CDS
CCATAAGCAACAGCCTCATC+CGG 0.426449 7_1:+7235956 None:intergenic
CGTGCAGTGGGAATCGATCT+TGG 0.426595 7_1:-7237218 Msa1007620:CDS
AGCCACCATCGAAGTTTATG+AGG 0.432517 7_1:-7235741 Msa1007620:CDS
TCCTCGCGGTCACCCTTTAG+AGG 0.432662 7_1:-7235654 Msa1007620:CDS
CTTGTAGTTAACCGAAATCA+AGG 0.440968 7_1:+7236753 None:intergenic
TATGATGCTCTGGCCATTCA+AGG 0.452525 7_1:-7236800 Msa1007620:CDS
TTTCACTGATGATCAAAGAT+TGG 0.454039 7_1:-7237096 Msa1007620:CDS
CAAGTTTGAGGAAATCAATA+TGG 0.456479 7_1:-7236149 Msa1007620:CDS
TCATCTTTGACTTGGGTGGT+GGG 0.462409 7_1:-7236462 Msa1007620:CDS
CTGATGATCAAAGATTGGTT+GGG 0.464698 7_1:-7237091 Msa1007620:CDS
CAAGCTGCTTTGTTGAGTGA+AGG 0.468563 7_1:-7235923 Msa1007620:CDS
CCTCCTTACAATTAACGATA+AGG 0.474695 7_1:-7236425 Msa1007620:CDS
AATCACTCGTGCCAAGTTTG+AGG 0.476109 7_1:-7236161 Msa1007620:CDS
CTTGATTTCGGTTAACTACA+AGG 0.476813 7_1:-7236752 Msa1007620:CDS
ACTGATGATCAAAGATTGGT+TGG 0.477750 7_1:-7237092 Msa1007620:CDS
CTGCCGGAAACACTCATCTC+GGG 0.486017 7_1:-7236384 Msa1007620:CDS
ATTCCTATCAAGAAAACAAA+TGG 0.487442 7_1:-7235794 Msa1007620:CDS
ATGCAAAGAGGTTAATTGGT+AGG 0.490498 7_1:-7236852 Msa1007620:CDS
CGCTGTCATCACCACCATTG+AGG 0.494719 7_1:-7236221 Msa1007620:CDS
ATACATGATGTCGTCCTTGT+TGG 0.495233 7_1:-7236058 Msa1007620:CDS
ACTCCAGAAATGACCTTGAA+TGG 0.496023 7_1:+7236787 None:intergenic
ATAGGAATGCTAGTGTTCCT+AGG 0.496798 7_1:+7235809 None:intergenic
GTGAGAACTCAAGAGCCTTA+AGG 0.498696 7_1:-7236288 Msa1007620:CDS
TAGTAAAGCATACCTCTAAA+GGG 0.502926 7_1:+7235642 None:intergenic
ATCTAATGCATTCATTACAT+TGG 0.506285 7_1:+7235451 None:intergenic
TTCAAAACGATATGATGCTC+TGG 0.506462 7_1:-7236810 Msa1007620:CDS
AAATAAAGAATCTACCTCAA+TGG 0.513375 7_1:+7236207 None:intergenic
CTCAACAGTTTCCAAACACT+CGG 0.517122 7_1:+7236117 None:intergenic
CAGATTTGCCTATAATGAGT+TGG 0.517915 7_1:+7235249 None:intergenic
TCATGAGTGTGGTAATTCCT+AGG 0.518946 7_1:-7235826 Msa1007620:CDS
GTAACAACTGCATTCTTGAC+AGG 0.522397 7_1:+7236643 None:intergenic
ATTAGATTATTGTGTTTACA+AGG 0.523212 7_1:-7235435 Msa1007620:CDS
ACTGCCGGAAACACTCATCT+CGG 0.525372 7_1:-7236385 Msa1007620:CDS
TTCGGTTAACTACAAGGGAC+AGG 0.526266 7_1:-7236746 Msa1007620:CDS
ATCATTGAAATAAGCAGGTA+CGG 0.536914 7_1:+7236621 None:intergenic
GGGTGACCGCGAGGAGCACA+TGG 0.541277 7_1:+7235662 None:intergenic
ATGAGATTTCTTCAGCACAT+AGG 0.544260 7_1:+7236716 None:intergenic
CGGAAAGCCACAATAGATGC+TGG 0.544288 7_1:-7236592 Msa1007620:CDS
TAAGAGTATCAACCCGGATG+AGG 0.553089 7_1:-7235969 Msa1007620:CDS
ACTGCTGCAGCTATTGCGTA+TGG 0.555701 7_1:-7236526 Msa1007620:CDS
TGAGCATCATTGAAATAAGC+AGG 0.555903 7_1:+7236616 None:intergenic
CTTATCGTTAATTGTAAGGA+GGG 0.556954 7_1:+7236426 None:intergenic
CATGATGTCGTCCTTGTTGG+TGG 0.557781 7_1:-7236055 Msa1007620:CDS
AATTTCATTCATACTACCAG+TGG 0.564448 7_1:+7235577 None:intergenic
TTTCAAGTTAAGGCTACTGC+CGG 0.565897 7_1:-7236400 Msa1007620:CDS
TGCAGCTATTGCGTATGGAC+TGG 0.573148 7_1:-7236521 Msa1007620:CDS
CATAAGCAACAGCCTCATCC+GGG 0.578274 7_1:+7235957 None:intergenic
TTGTAGTTAACCGAAATCAA+GGG 0.586135 7_1:+7236754 None:intergenic
AAGTATGAAGGACGTGCAGT+GGG 0.586872 7_1:-7237230 Msa1007620:CDS
AAAGTATGAAGGACGTGCAG+TGG 0.587167 7_1:-7237231 Msa1007620:CDS
AGAGGACATTGATAATAGGA+TGG 0.589461 7_1:-7236359 Msa1007620:CDS
TCAGTGAAAGCAACACAAGA+AGG 0.593151 7_1:+7237110 None:intergenic
CCTTATCGTTAATTGTAAGG+AGG 0.593274 7_1:+7236425 None:intergenic
GCTACTGACAACAATCTGCT+TGG 0.593670 7_1:-7235704 Msa1007620:CDS
GAAAACAAATGGTTATGCAA+CGG 0.593939 7_1:-7235783 Msa1007620:CDS
TTGCTGGTCTTAATATTATG+CGG 0.598677 7_1:-7236564 Msa1007620:CDS
AGCCTTAAGGAGGTTGAGAA+CGG 0.603861 7_1:-7236275 Msa1007620:CDS
CTCACCCTCATAAACTTCGA+TGG 0.605720 7_1:+7235736 None:intergenic
TTGATTTCGGTTAACTACAA+GGG 0.607351 7_1:-7236751 Msa1007620:CDS
AATAGCACCAGCATCTATTG+TGG 0.610874 7_1:+7236585 None:intergenic
TGAGTTGGAGCATACTCTCA+AGG 0.612535 7_1:+7235264 None:intergenic
GCCACCATCGAAGTTTATGA+GGG 0.613772 7_1:-7235740 Msa1007620:CDS
TGCCGGAAACACTCATCTCG+GGG 0.616852 7_1:-7236383 Msa1007620:CDS
TTTGAGATACCAAGAGACAA+AGG 0.618740 7_1:+7235860 None:intergenic
GATGGTGAACTACTTTGCAC+AGG 0.621581 7_1:-7236341 Msa1007620:CDS
TGATGATCAAAGATTGGTTG+GGG 0.623126 7_1:-7237090 Msa1007620:CDS
GGTACTATCAAGTAAACTTG+TGG 0.625691 7_1:+7235328 None:intergenic
AGCTGAGAATTACCGTGTCG+AGG 0.626673 7_1:-7235495 Msa1007620:CDS
TGTTCTTGAAAATCACCTGA+AGG 0.626869 7_1:-7235288 Msa1007620:CDS
GAGATTATTCACAATGACCA+AGG 0.627593 7_1:-7237146 Msa1007620:CDS
TAAAGAATCTACCTCAATGG+TGG 0.633251 7_1:+7236210 None:intergenic
GAAAGCAACACAAGAAGGTG+TGG 0.633341 7_1:+7237115 None:intergenic
TCTCTTGGTATCTCAAAACA+AGG 0.635360 7_1:-7235854 Msa1007620:CDS
ACAAGGTGACATCATGAGTG+TGG 0.648276 7_1:-7235837 Msa1007620:CDS
GATCAATTCTGCAATCACAA+AGG 0.649185 7_1:-7235351 Msa1007620:CDS
AGAACTCAAGAGCCTTAAGG+AGG 0.650848 7_1:-7236285 Msa1007620:CDS
GGACAAGAGAACTAATTGTG+TGG 0.654792 7_1:-7236500 Msa1007620:CDS
AAAGATGCGCGAGACTGCAG+AGG 0.655131 7_1:-7236680 Msa1007620:CDS
TACGCAATAGCTGCAGCAGT+AGG 0.659113 7_1:+7236529 None:intergenic
ACCCTCATAAACTTCGATGG+TGG 0.659298 7_1:+7235739 None:intergenic
ACCTCTAAAGGGTGACCGCG+AGG 0.662084 7_1:+7235653 None:intergenic
CAAGAGAACTAATTGTGTGG+AGG 0.667224 7_1:-7236497 Msa1007620:CDS
TCTGTCCCATGTGCTCCTCG+CGG 0.670259 7_1:-7235668 Msa1007620:CDS
TTCTAGACGAGCCACCAACA+AGG 0.672363 7_1:+7236044 None:intergenic
CGTATTCGTGCGTTGCTGTG+TGG 0.676152 7_1:-7237190 Msa1007620:CDS
TCTGTGTAAGAGTATCAACC+CGG 0.678792 7_1:-7235975 Msa1007620:CDS
CTTATTTCAATGATGCTCAG+CGG 0.693840 7_1:-7236612 Msa1007620:CDS
GGTGACCGCGAGGAGCACAT+GGG 0.694254 7_1:+7235663 None:intergenic
GCCGGAAACACTCATCTCGG+GGG 0.729190 7_1:-7236382 Msa1007620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTCATTTCTTTATTGT+TGG - chr7_1:7235482-7235501 Msa1007620:CDS 15.0%
!! TTATTTCATTTCTTTATTGT+TGG - chr7_1:7235482-7235501 Msa1007620:CDS 15.0%
!! AGTAAATTAAATTCTGATCA+GGG + chr7_1:7235592-7235611 None:intergenic 20.0%
!! TAGTAAATTAAATTCTGATC+AGG + chr7_1:7235593-7235612 None:intergenic 20.0%
!!! TAATATTTTCATCTTTGACT+TGG - chr7_1:7236013-7236032 Msa1007620:CDS 20.0%
!!! AATATTTTCATCTTTGACTT+GGG - chr7_1:7236014-7236033 Msa1007620:CDS 20.0%
!!! CTTTAAAAATGTTCCAAAAT+TGG - chr7_1:7236583-7236602 Msa1007620:CDS 20.0%
!!! GATCATTTTTGTAATTTCTT+GGG + chr7_1:7236963-7236982 None:intergenic 20.0%
!! ATTAGATTATTGTGTTTACA+AGG - chr7_1:7237048-7237067 Msa1007620:CDS 20.0%
!! AGTAAATTAAATTCTGATCA+GGG + chr7_1:7235592-7235611 None:intergenic 20.0%
!! TAGTAAATTAAATTCTGATC+AGG + chr7_1:7235593-7235612 None:intergenic 20.0%
!!! TAATATTTTCATCTTTGACT+TGG - chr7_1:7236013-7236032 Msa1007620:CDS 20.0%
!!! AATATTTTCATCTTTGACTT+GGG - chr7_1:7236014-7236033 Msa1007620:CDS 20.0%
!!! CTTTAAAAATGTTCCAAAAT+TGG - chr7_1:7236583-7236602 Msa1007620:CDS 20.0%
!!! GATCATTTTTGTAATTTCTT+GGG + chr7_1:7236963-7236982 None:intergenic 20.0%
!! ATTAGATTATTGTGTTTACA+AGG - chr7_1:7237048-7237067 Msa1007620:CDS 20.0%
!!! TTATTTTGTTAGATGCAAAG+AGG - chr7_1:7235619-7235638 Msa1007620:CDS 25.0%
! AAATAAAGAATCTACCTCAA+TGG + chr7_1:7236279-7236298 None:intergenic 25.0%
!!! TATAGCACTTTTTTCCATTT+TGG + chr7_1:7236408-7236427 None:intergenic 25.0%
! ATTCCTATCAAGAAAACAAA+TGG - chr7_1:7236689-7236708 Msa1007620:CDS 25.0%
!!! TAACCATTTGTTTTCTTGAT+AGG + chr7_1:7236695-7236714 None:intergenic 25.0%
! TGCTTTACTATCAATGAAAA+TGG - chr7_1:7236854-7236873 Msa1007620:CDS 25.0%
!!! GGATCATTTTTGTAATTTCT+TGG + chr7_1:7236964-7236983 None:intergenic 25.0%
! ATCTAATGCATTCATTACAT+TGG + chr7_1:7237035-7237054 None:intergenic 25.0%
!!! TTATTTTGTTAGATGCAAAG+AGG - chr7_1:7235619-7235638 Msa1007620:CDS 25.0%
! AAATAAAGAATCTACCTCAA+TGG + chr7_1:7236279-7236298 None:intergenic 25.0%
!!! TATAGCACTTTTTTCCATTT+TGG + chr7_1:7236408-7236427 None:intergenic 25.0%
! ATTCCTATCAAGAAAACAAA+TGG - chr7_1:7236689-7236708 Msa1007620:CDS 25.0%
!!! TAACCATTTGTTTTCTTGAT+AGG + chr7_1:7236695-7236714 None:intergenic 25.0%
! TGCTTTACTATCAATGAAAA+TGG - chr7_1:7236854-7236873 Msa1007620:CDS 25.0%
!!! GGATCATTTTTGTAATTTCT+TGG + chr7_1:7236964-7236983 None:intergenic 25.0%
! ATCTAATGCATTCATTACAT+TGG + chr7_1:7237035-7237054 None:intergenic 25.0%
TTTCACTGATGATCAAAGAT+TGG - chr7_1:7235387-7235406 Msa1007620:CDS 30.0%
! TACCAAAAACAGTGTTTTCA+GGG + chr7_1:7235447-7235466 None:intergenic 30.0%
! TTACCAAAAACAGTGTTTTC+AGG + chr7_1:7235448-7235467 None:intergenic 30.0%
TTAGATGCAAAGAGGTTAAT+TGG - chr7_1:7235627-7235646 Msa1007620:CDS 30.0%
TTGTAGTTAACCGAAATCAA+GGG + chr7_1:7235732-7235751 None:intergenic 30.0%
TTGATTTCGGTTAACTACAA+GGG - chr7_1:7235732-7235751 Msa1007620:CDS 30.0%
ATCATTGAAATAAGCAGGTA+CGG + chr7_1:7235865-7235884 None:intergenic 30.0%
!! TTGCTGGTCTTAATATTATG+CGG - chr7_1:7235919-7235938 Msa1007620:CDS 30.0%
CTTATCGTTAATTGTAAGGA+GGG + chr7_1:7236060-7236079 None:intergenic 30.0%
AGACCTTATCGTTAATTGTA+AGG + chr7_1:7236064-7236083 None:intergenic 30.0%
GGAGTTTAAGAAGAAAAACA+AGG - chr7_1:7236163-7236182 Msa1007620:CDS 30.0%
! GAGGTAGATTCTTTATTTCA+AGG - chr7_1:7236281-7236300 Msa1007620:CDS 30.0%
!! CATATTGATTTCCTCAAACT+TGG + chr7_1:7236336-7236355 None:intergenic 30.0%
CAAGTTTGAGGAAATCAATA+TGG - chr7_1:7236334-7236353 Msa1007620:CDS 30.0%
! TGCAATAGTTGTTGTACTTT+TGG + chr7_1:7236467-7236486 None:intergenic 30.0%
! AAAAGTACAACAACTATTGC+AGG - chr7_1:7236466-7236485 Msa1007620:CDS 30.0%
GAAAACAAATGGTTATGCAA+CGG - chr7_1:7236700-7236719 Msa1007620:CDS 30.0%
TAGTAAAGCATACCTCTAAA+GGG + chr7_1:7236844-7236863 None:intergenic 30.0%
ATAGTAAAGCATACCTCTAA+AGG + chr7_1:7236845-7236864 None:intergenic 30.0%
AATTTCATTCATACTACCAG+TGG + chr7_1:7236909-7236928 None:intergenic 30.0%
TCGAGGATGAAAAATTTCTA+AGG - chr7_1:7237005-7237024 Msa1007620:intron 30.0%
! GGATGAAAAATTTCTAAGGA+AGG - chr7_1:7237009-7237028 Msa1007620:intron 30.0%
AACATCTATTTCACTCTGTT+GGG + chr7_1:7237179-7237198 None:intergenic 30.0%
TTTCACTGATGATCAAAGAT+TGG - chr7_1:7235387-7235406 Msa1007620:CDS 30.0%
! TACCAAAAACAGTGTTTTCA+GGG + chr7_1:7235447-7235466 None:intergenic 30.0%
! TTACCAAAAACAGTGTTTTC+AGG + chr7_1:7235448-7235467 None:intergenic 30.0%
TTAGATGCAAAGAGGTTAAT+TGG - chr7_1:7235627-7235646 Msa1007620:CDS 30.0%
TTGTAGTTAACCGAAATCAA+GGG + chr7_1:7235732-7235751 None:intergenic 30.0%
TTGATTTCGGTTAACTACAA+GGG - chr7_1:7235732-7235751 Msa1007620:CDS 30.0%
ATCATTGAAATAAGCAGGTA+CGG + chr7_1:7235865-7235884 None:intergenic 30.0%
!! TTGCTGGTCTTAATATTATG+CGG - chr7_1:7235919-7235938 Msa1007620:CDS 30.0%
CTTATCGTTAATTGTAAGGA+GGG + chr7_1:7236060-7236079 None:intergenic 30.0%
AGACCTTATCGTTAATTGTA+AGG + chr7_1:7236064-7236083 None:intergenic 30.0%
GGAGTTTAAGAAGAAAAACA+AGG - chr7_1:7236163-7236182 Msa1007620:CDS 30.0%
! GAGGTAGATTCTTTATTTCA+AGG - chr7_1:7236281-7236300 Msa1007620:CDS 30.0%
!! CATATTGATTTCCTCAAACT+TGG + chr7_1:7236336-7236355 None:intergenic 30.0%
CAAGTTTGAGGAAATCAATA+TGG - chr7_1:7236334-7236353 Msa1007620:CDS 30.0%
! TGCAATAGTTGTTGTACTTT+TGG + chr7_1:7236467-7236486 None:intergenic 30.0%
! AAAAGTACAACAACTATTGC+AGG - chr7_1:7236466-7236485 Msa1007620:CDS 30.0%
GAAAACAAATGGTTATGCAA+CGG - chr7_1:7236700-7236719 Msa1007620:CDS 30.0%
TAGTAAAGCATACCTCTAAA+GGG + chr7_1:7236844-7236863 None:intergenic 30.0%
ATAGTAAAGCATACCTCTAA+AGG + chr7_1:7236845-7236864 None:intergenic 30.0%
AATTTCATTCATACTACCAG+TGG + chr7_1:7236909-7236928 None:intergenic 30.0%
TCGAGGATGAAAAATTTCTA+AGG - chr7_1:7237005-7237024 Msa1007620:intron 30.0%
! GGATGAAAAATTTCTAAGGA+AGG - chr7_1:7237009-7237028 Msa1007620:intron 30.0%
AACATCTATTTCACTCTGTT+GGG + chr7_1:7237179-7237198 None:intergenic 30.0%
GAGATTATTCACAATGACCA+AGG - chr7_1:7235337-7235356 Msa1007620:CDS 35.0%
ACTGATGATCAAAGATTGGT+TGG - chr7_1:7235391-7235410 Msa1007620:CDS 35.0%
! CTGATGATCAAAGATTGGTT+GGG - chr7_1:7235392-7235411 Msa1007620:CDS 35.0%
! TGATGATCAAAGATTGGTTG+GGG - chr7_1:7235393-7235412 Msa1007620:CDS 35.0%
! AACCCTGAAAACACTGTTTT+TGG - chr7_1:7235442-7235461 Msa1007620:CDS 35.0%
ATGCAAAGAGGTTAATTGGT+AGG - chr7_1:7235631-7235650 Msa1007620:CDS 35.0%
TTCAAAACGATATGATGCTC+TGG - chr7_1:7235673-7235692 Msa1007620:CDS 35.0%
GAATGACAAACCCTTGATTT+CGG - chr7_1:7235719-7235738 Msa1007620:CDS 35.0%
CTTGTAGTTAACCGAAATCA+AGG + chr7_1:7235733-7235752 None:intergenic 35.0%
CTTGATTTCGGTTAACTACA+AGG - chr7_1:7235731-7235750 Msa1007620:CDS 35.0%
ATGAGATTTCTTCAGCACAT+AGG + chr7_1:7235770-7235789 None:intergenic 35.0%
TGCTGAAGAAATCTCATCTA+TGG - chr7_1:7235773-7235792 Msa1007620:CDS 35.0%
TGAGCATCATTGAAATAAGC+AGG + chr7_1:7235870-7235889 None:intergenic 35.0%
CTTATTTCAATGATGCTCAG+CGG - chr7_1:7235871-7235890 Msa1007620:CDS 35.0%
!!! ATTTTCATCTTTGACTTGGG+TGG - chr7_1:7236017-7236036 Msa1007620:CDS 35.0%
CCTTATCGTTAATTGTAAGG+AGG + chr7_1:7236061-7236080 None:intergenic 35.0%
CCTCCTTACAATTAACGATA+AGG - chr7_1:7236058-7236077 Msa1007620:CDS 35.0%
!! CGATAAGGTCTTTCAAGTTA+AGG - chr7_1:7236073-7236092 Msa1007620:CDS 35.0%
! AGAGGACATTGATAATAGGA+TGG - chr7_1:7236124-7236143 Msa1007620:CDS 35.0%
TAAAGAATCTACCTCAATGG+TGG + chr7_1:7236276-7236295 None:intergenic 35.0%
! TATTGCAGGAATTTTTCGCA+GGG - chr7_1:7236480-7236499 Msa1007620:CDS 35.0%
! TTTGAGATACCAAGAGACAA+AGG + chr7_1:7236626-7236645 None:intergenic 35.0%
TCTCTTGGTATCTCAAAACA+AGG - chr7_1:7236629-7236648 Msa1007620:CDS 35.0%
TCTGCAAATGAAAAATCCAC+TGG - chr7_1:7236890-7236909 Msa1007620:intron 35.0%
! GAAATTTTTCATCCTCGACA+CGG + chr7_1:7237003-7237022 None:intergenic 35.0%
GATCAATTCTGCAATCACAA+AGG - chr7_1:7237132-7237151 Msa1007620:CDS 35.0%
GGTACTATCAAGTAAACTTG+TGG + chr7_1:7237158-7237177 None:intergenic 35.0%
GAACATCTATTTCACTCTGT+TGG + chr7_1:7237180-7237199 None:intergenic 35.0%
TGTTCTTGAAAATCACCTGA+AGG - chr7_1:7237195-7237214 Msa1007620:CDS 35.0%
AGTATGCTCCAACTCATTAT+AGG - chr7_1:7237226-7237245 Msa1007620:CDS 35.0%
CAGATTTGCCTATAATGAGT+TGG + chr7_1:7237237-7237256 None:intergenic 35.0%
GAGATTATTCACAATGACCA+AGG - chr7_1:7235337-7235356 Msa1007620:CDS 35.0%
ACTGATGATCAAAGATTGGT+TGG - chr7_1:7235391-7235410 Msa1007620:CDS 35.0%
! CTGATGATCAAAGATTGGTT+GGG - chr7_1:7235392-7235411 Msa1007620:CDS 35.0%
! TGATGATCAAAGATTGGTTG+GGG - chr7_1:7235393-7235412 Msa1007620:CDS 35.0%
! AACCCTGAAAACACTGTTTT+TGG - chr7_1:7235442-7235461 Msa1007620:CDS 35.0%
ATGCAAAGAGGTTAATTGGT+AGG - chr7_1:7235631-7235650 Msa1007620:CDS 35.0%
TTCAAAACGATATGATGCTC+TGG - chr7_1:7235673-7235692 Msa1007620:CDS 35.0%
GAATGACAAACCCTTGATTT+CGG - chr7_1:7235719-7235738 Msa1007620:CDS 35.0%
CTTGTAGTTAACCGAAATCA+AGG + chr7_1:7235733-7235752 None:intergenic 35.0%
CTTGATTTCGGTTAACTACA+AGG - chr7_1:7235731-7235750 Msa1007620:CDS 35.0%
ATGAGATTTCTTCAGCACAT+AGG + chr7_1:7235770-7235789 None:intergenic 35.0%
TGCTGAAGAAATCTCATCTA+TGG - chr7_1:7235773-7235792 Msa1007620:CDS 35.0%
TGAGCATCATTGAAATAAGC+AGG + chr7_1:7235870-7235889 None:intergenic 35.0%
CTTATTTCAATGATGCTCAG+CGG - chr7_1:7235871-7235890 Msa1007620:CDS 35.0%
!!! ATTTTCATCTTTGACTTGGG+TGG - chr7_1:7236017-7236036 Msa1007620:CDS 35.0%
CCTTATCGTTAATTGTAAGG+AGG + chr7_1:7236061-7236080 None:intergenic 35.0%
CCTCCTTACAATTAACGATA+AGG - chr7_1:7236058-7236077 Msa1007620:CDS 35.0%
!! CGATAAGGTCTTTCAAGTTA+AGG - chr7_1:7236073-7236092 Msa1007620:CDS 35.0%
! AGAGGACATTGATAATAGGA+TGG - chr7_1:7236124-7236143 Msa1007620:CDS 35.0%
TAAAGAATCTACCTCAATGG+TGG + chr7_1:7236276-7236295 None:intergenic 35.0%
! TATTGCAGGAATTTTTCGCA+GGG - chr7_1:7236480-7236499 Msa1007620:CDS 35.0%
! TTTGAGATACCAAGAGACAA+AGG + chr7_1:7236626-7236645 None:intergenic 35.0%
TCTCTTGGTATCTCAAAACA+AGG - chr7_1:7236629-7236648 Msa1007620:CDS 35.0%
TCTGCAAATGAAAAATCCAC+TGG - chr7_1:7236890-7236909 Msa1007620:intron 35.0%
! GAAATTTTTCATCCTCGACA+CGG + chr7_1:7237003-7237022 None:intergenic 35.0%
GATCAATTCTGCAATCACAA+AGG - chr7_1:7237132-7237151 Msa1007620:CDS 35.0%
GGTACTATCAAGTAAACTTG+TGG + chr7_1:7237158-7237177 None:intergenic 35.0%
GAACATCTATTTCACTCTGT+TGG + chr7_1:7237180-7237199 None:intergenic 35.0%
TGTTCTTGAAAATCACCTGA+AGG - chr7_1:7237195-7237214 Msa1007620:CDS 35.0%
AGTATGCTCCAACTCATTAT+AGG - chr7_1:7237226-7237245 Msa1007620:CDS 35.0%
CAGATTTGCCTATAATGAGT+TGG + chr7_1:7237237-7237256 None:intergenic 35.0%
TCAGTGAAAGCAACACAAGA+AGG + chr7_1:7235376-7235395 None:intergenic 40.0%
!! AACAGTGTTTTCAGGGTTTG+TGG + chr7_1:7235440-7235459 None:intergenic 40.0%
! ATACGATGTGTTGACACTGT+TGG - chr7_1:7235548-7235567 Msa1007620:CDS 40.0%
ACTCCAGAAATGACCTTGAA+TGG + chr7_1:7235699-7235718 None:intergenic 40.0%
GTAACAACTGCATTCTTGAC+AGG + chr7_1:7235843-7235862 None:intergenic 40.0%
AATAGCACCAGCATCTATTG+TGG + chr7_1:7235901-7235920 None:intergenic 40.0%
GGACAAGAGAACTAATTGTG+TGG - chr7_1:7235983-7236002 Msa1007620:CDS 40.0%
CAAGAGAACTAATTGTGTGG+AGG - chr7_1:7235986-7236005 Msa1007620:CDS 40.0%
!! TTTCAAGTTAAGGCTACTGC+CGG - chr7_1:7236083-7236102 Msa1007620:CDS 40.0%
CTCAACAGTTTCCAAACACT+CGG + chr7_1:7236369-7236388 None:intergenic 40.0%
ATACATGATGTCGTCCTTGT+TGG - chr7_1:7236425-7236444 Msa1007620:CDS 40.0%
! CTATTGCAGGAATTTTTCGC+AGG - chr7_1:7236479-7236498 Msa1007620:CDS 40.0%
!! TCTGTGTAAGAGTATCAACC+CGG - chr7_1:7236508-7236527 Msa1007620:CDS 40.0%
! ACATCTTGCAGCACCAATTT+TGG + chr7_1:7236599-7236618 None:intergenic 40.0%
TCATGAGTGTGGTAATTCCT+AGG - chr7_1:7236657-7236676 Msa1007620:CDS 40.0%
ATAGGAATGCTAGTGTTCCT+AGG + chr7_1:7236677-7236696 None:intergenic 40.0%
TCAGTGAAAGCAACACAAGA+AGG + chr7_1:7235376-7235395 None:intergenic 40.0%
!! AACAGTGTTTTCAGGGTTTG+TGG + chr7_1:7235440-7235459 None:intergenic 40.0%
! ATACGATGTGTTGACACTGT+TGG - chr7_1:7235548-7235567 Msa1007620:CDS 40.0%
ACTCCAGAAATGACCTTGAA+TGG + chr7_1:7235699-7235718 None:intergenic 40.0%
GTAACAACTGCATTCTTGAC+AGG + chr7_1:7235843-7235862 None:intergenic 40.0%
AATAGCACCAGCATCTATTG+TGG + chr7_1:7235901-7235920 None:intergenic 40.0%
GGACAAGAGAACTAATTGTG+TGG - chr7_1:7235983-7236002 Msa1007620:CDS 40.0%
CAAGAGAACTAATTGTGTGG+AGG - chr7_1:7235986-7236005 Msa1007620:CDS 40.0%
!! TTTCAAGTTAAGGCTACTGC+CGG - chr7_1:7236083-7236102 Msa1007620:CDS 40.0%
CTCAACAGTTTCCAAACACT+CGG + chr7_1:7236369-7236388 None:intergenic 40.0%
ATACATGATGTCGTCCTTGT+TGG - chr7_1:7236425-7236444 Msa1007620:CDS 40.0%
! CTATTGCAGGAATTTTTCGC+AGG - chr7_1:7236479-7236498 Msa1007620:CDS 40.0%
!! TCTGTGTAAGAGTATCAACC+CGG - chr7_1:7236508-7236527 Msa1007620:CDS 40.0%
! ACATCTTGCAGCACCAATTT+TGG + chr7_1:7236599-7236618 None:intergenic 40.0%
TCATGAGTGTGGTAATTCCT+AGG - chr7_1:7236657-7236676 Msa1007620:CDS 40.0%
ATAGGAATGCTAGTGTTCCT+AGG + chr7_1:7236677-7236696 None:intergenic 40.0%
AAAGTATGAAGGACGTGCAG+TGG - chr7_1:7235252-7235271 Msa1007620:CDS 45.0%
AAGTATGAAGGACGTGCAGT+GGG - chr7_1:7235253-7235272 Msa1007620:CDS 45.0%
!!! AAGGTGTGGTTTTGTTGCCT+TGG + chr7_1:7235357-7235376 None:intergenic 45.0%
GAAAGCAACACAAGAAGGTG+TGG + chr7_1:7235371-7235390 None:intergenic 45.0%
TATGATGCTCTGGCCATTCA+AGG - chr7_1:7235683-7235702 Msa1007620:CDS 45.0%
TGGCCATTCAAGGTCATTTC+TGG - chr7_1:7235693-7235712 Msa1007620:CDS 45.0%
TTCGGTTAACTACAAGGGAC+AGG - chr7_1:7235737-7235756 Msa1007620:CDS 45.0%
!! ATAGATGCTGGTGCTATTGC+TGG - chr7_1:7235903-7235922 Msa1007620:CDS 45.0%
!! TTCATCTTTGACTTGGGTGG+TGG - chr7_1:7236020-7236039 Msa1007620:CDS 45.0%
!! TCATCTTTGACTTGGGTGGT+GGG - chr7_1:7236021-7236040 Msa1007620:CDS 45.0%
! GGGGAGAGGACATTGATAAT+AGG - chr7_1:7236120-7236139 Msa1007620:CDS 45.0%
GATGGTGAACTACTTTGCAC+AGG - chr7_1:7236142-7236161 Msa1007620:CDS 45.0%
GTGAGAACTCAAGAGCCTTA+AGG - chr7_1:7236195-7236214 Msa1007620:CDS 45.0%
AGAACTCAAGAGCCTTAAGG+AGG - chr7_1:7236198-7236217 Msa1007620:CDS 45.0%
AGCCTTAAGGAGGTTGAGAA+CGG - chr7_1:7236208-7236227 Msa1007620:CDS 45.0%
AATCACTCGTGCCAAGTTTG+AGG - chr7_1:7236322-7236341 Msa1007620:CDS 45.0%
! GGATCTTTTCACCGAGTGTT+TGG - chr7_1:7236355-7236374 Msa1007620:CDS 45.0%
TTGTCTCGCTGATGCCAAAA+TGG - chr7_1:7236391-7236410 Msa1007620:CDS 45.0%
!! TAAGAGTATCAACCCGGATG+AGG - chr7_1:7236514-7236533 Msa1007620:CDS 45.0%
! CAAGCTGCTTTGTTGAGTGA+AGG - chr7_1:7236560-7236579 Msa1007620:CDS 45.0%
GATGTTGCTCCTTTGTCTCT+TGG - chr7_1:7236614-7236633 Msa1007620:CDS 45.0%
ACAAGGTGACATCATGAGTG+TGG - chr7_1:7236646-7236665 Msa1007620:CDS 45.0%
AGCCACCATCGAAGTTTATG+AGG - chr7_1:7236742-7236761 Msa1007620:CDS 45.0%
GCCACCATCGAAGTTTATGA+GGG - chr7_1:7236743-7236762 Msa1007620:CDS 45.0%
ACCCTCATAAACTTCGATGG+TGG + chr7_1:7236747-7236766 None:intergenic 45.0%
CTCACCCTCATAAACTTCGA+TGG + chr7_1:7236750-7236769 None:intergenic 45.0%
GCTACTGACAACAATCTGCT+TGG - chr7_1:7236779-7236798 Msa1007620:CDS 45.0%
CACGGTAATTCTCAGCTTCT+TGG + chr7_1:7236985-7237004 None:intergenic 45.0%
! TGAGTTGGAGCATACTCTCA+AGG + chr7_1:7237222-7237241 None:intergenic 45.0%
AAAGTATGAAGGACGTGCAG+TGG - chr7_1:7235252-7235271 Msa1007620:CDS 45.0%
AAGTATGAAGGACGTGCAGT+GGG - chr7_1:7235253-7235272 Msa1007620:CDS 45.0%
!!! AAGGTGTGGTTTTGTTGCCT+TGG + chr7_1:7235357-7235376 None:intergenic 45.0%
GAAAGCAACACAAGAAGGTG+TGG + chr7_1:7235371-7235390 None:intergenic 45.0%
TATGATGCTCTGGCCATTCA+AGG - chr7_1:7235683-7235702 Msa1007620:CDS 45.0%
TGGCCATTCAAGGTCATTTC+TGG - chr7_1:7235693-7235712 Msa1007620:CDS 45.0%
TTCGGTTAACTACAAGGGAC+AGG - chr7_1:7235737-7235756 Msa1007620:CDS 45.0%
!! ATAGATGCTGGTGCTATTGC+TGG - chr7_1:7235903-7235922 Msa1007620:CDS 45.0%
!! TTCATCTTTGACTTGGGTGG+TGG - chr7_1:7236020-7236039 Msa1007620:CDS 45.0%
!! TCATCTTTGACTTGGGTGGT+GGG - chr7_1:7236021-7236040 Msa1007620:CDS 45.0%
! GGGGAGAGGACATTGATAAT+AGG - chr7_1:7236120-7236139 Msa1007620:CDS 45.0%
GATGGTGAACTACTTTGCAC+AGG - chr7_1:7236142-7236161 Msa1007620:CDS 45.0%
GTGAGAACTCAAGAGCCTTA+AGG - chr7_1:7236195-7236214 Msa1007620:CDS 45.0%
AGAACTCAAGAGCCTTAAGG+AGG - chr7_1:7236198-7236217 Msa1007620:CDS 45.0%
AGCCTTAAGGAGGTTGAGAA+CGG - chr7_1:7236208-7236227 Msa1007620:CDS 45.0%
AATCACTCGTGCCAAGTTTG+AGG - chr7_1:7236322-7236341 Msa1007620:CDS 45.0%
! GGATCTTTTCACCGAGTGTT+TGG - chr7_1:7236355-7236374 Msa1007620:CDS 45.0%
TTGTCTCGCTGATGCCAAAA+TGG - chr7_1:7236391-7236410 Msa1007620:CDS 45.0%
!! TAAGAGTATCAACCCGGATG+AGG - chr7_1:7236514-7236533 Msa1007620:CDS 45.0%
! CAAGCTGCTTTGTTGAGTGA+AGG - chr7_1:7236560-7236579 Msa1007620:CDS 45.0%
GATGTTGCTCCTTTGTCTCT+TGG - chr7_1:7236614-7236633 Msa1007620:CDS 45.0%
ACAAGGTGACATCATGAGTG+TGG - chr7_1:7236646-7236665 Msa1007620:CDS 45.0%
AGCCACCATCGAAGTTTATG+AGG - chr7_1:7236742-7236761 Msa1007620:CDS 45.0%
GCCACCATCGAAGTTTATGA+GGG - chr7_1:7236743-7236762 Msa1007620:CDS 45.0%
ACCCTCATAAACTTCGATGG+TGG + chr7_1:7236747-7236766 None:intergenic 45.0%
CTCACCCTCATAAACTTCGA+TGG + chr7_1:7236750-7236769 None:intergenic 45.0%
GCTACTGACAACAATCTGCT+TGG - chr7_1:7236779-7236798 Msa1007620:CDS 45.0%
CACGGTAATTCTCAGCTTCT+TGG + chr7_1:7236985-7237004 None:intergenic 45.0%
! TGAGTTGGAGCATACTCTCA+AGG + chr7_1:7237222-7237241 None:intergenic 45.0%
!!! CGAGACTGCAGAGGCATTTT+TGG - chr7_1:7235812-7235831 Msa1007620:CDS 50.0%
CGGAAAGCCACAATAGATGC+TGG - chr7_1:7235891-7235910 Msa1007620:CDS 50.0%
TACGCAATAGCTGCAGCAGT+AGG + chr7_1:7235957-7235976 None:intergenic 50.0%
ACTGCTGCAGCTATTGCGTA+TGG - chr7_1:7235957-7235976 Msa1007620:CDS 50.0%
TGCAGCTATTGCGTATGGAC+TGG - chr7_1:7235962-7235981 Msa1007620:CDS 50.0%
ACTGCCGGAAACACTCATCT+CGG - chr7_1:7236098-7236117 Msa1007620:CDS 50.0%
CATGATGTCGTCCTTGTTGG+TGG - chr7_1:7236428-7236447 Msa1007620:CDS 50.0%
TTCTAGACGAGCCACCAACA+AGG + chr7_1:7236442-7236461 None:intergenic 50.0%
! GCAGGAATTTTTCGCAGGGA+AGG - chr7_1:7236484-7236503 Msa1007620:CDS 50.0%
CATAAGCAACAGCCTCATCC+GGG + chr7_1:7236529-7236548 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+CGG + chr7_1:7236530-7236549 None:intergenic 50.0%
! CTTCGATGGTGGCTGAAGTT+TGG + chr7_1:7236736-7236755 None:intergenic 50.0%
AGCTGAGAATTACCGTGTCG+AGG - chr7_1:7236988-7237007 Msa1007620:intron 50.0%
GCATACTCTCAAGGTCCTTC+AGG + chr7_1:7237213-7237232 None:intergenic 50.0%
!!! CGAGACTGCAGAGGCATTTT+TGG - chr7_1:7235812-7235831 Msa1007620:CDS 50.0%
CGGAAAGCCACAATAGATGC+TGG - chr7_1:7235891-7235910 Msa1007620:CDS 50.0%
TACGCAATAGCTGCAGCAGT+AGG + chr7_1:7235957-7235976 None:intergenic 50.0%
ACTGCTGCAGCTATTGCGTA+TGG - chr7_1:7235957-7235976 Msa1007620:CDS 50.0%
TGCAGCTATTGCGTATGGAC+TGG - chr7_1:7235962-7235981 Msa1007620:CDS 50.0%
ACTGCCGGAAACACTCATCT+CGG - chr7_1:7236098-7236117 Msa1007620:CDS 50.0%
CATGATGTCGTCCTTGTTGG+TGG - chr7_1:7236428-7236447 Msa1007620:CDS 50.0%
TTCTAGACGAGCCACCAACA+AGG + chr7_1:7236442-7236461 None:intergenic 50.0%
! GCAGGAATTTTTCGCAGGGA+AGG - chr7_1:7236484-7236503 Msa1007620:CDS 50.0%
CATAAGCAACAGCCTCATCC+GGG + chr7_1:7236529-7236548 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+CGG + chr7_1:7236530-7236549 None:intergenic 50.0%
! CTTCGATGGTGGCTGAAGTT+TGG + chr7_1:7236736-7236755 None:intergenic 50.0%
AGCTGAGAATTACCGTGTCG+AGG - chr7_1:7236988-7237007 Msa1007620:intron 50.0%
GCATACTCTCAAGGTCCTTC+AGG + chr7_1:7237213-7237232 None:intergenic 50.0%
CGTGCAGTGGGAATCGATCT+TGG - chr7_1:7235265-7235284 Msa1007620:CDS 55.0%
CGTATTCGTGCGTTGCTGTG+TGG - chr7_1:7235293-7235312 Msa1007620:CDS 55.0%
AAAGATGCGCGAGACTGCAG+AGG - chr7_1:7235803-7235822 Msa1007620:CDS 55.0%
CTGCCGGAAACACTCATCTC+GGG - chr7_1:7236099-7236118 Msa1007620:CDS 55.0%
TGCCGGAAACACTCATCTCG+GGG - chr7_1:7236100-7236119 Msa1007620:CDS 55.0%
TCCCCCGAGATGAGTGTTTC+CGG + chr7_1:7236105-7236124 None:intergenic 55.0%
AAACACTCATCTCGGGGGAG+AGG - chr7_1:7236106-7236125 Msa1007620:CDS 55.0%
CGCCGTTCTCAACCTCCTTA+AGG + chr7_1:7236213-7236232 None:intergenic 55.0%
CGCTGTCATCACCACCATTG+AGG - chr7_1:7236262-7236281 Msa1007620:CDS 55.0%
! CCGGATGAGGCTGTTGCTTA+TGG - chr7_1:7236527-7236546 Msa1007620:CDS 55.0%
CGTGCAGTGGGAATCGATCT+TGG - chr7_1:7235265-7235284 Msa1007620:CDS 55.0%
CGTATTCGTGCGTTGCTGTG+TGG - chr7_1:7235293-7235312 Msa1007620:CDS 55.0%
AAAGATGCGCGAGACTGCAG+AGG - chr7_1:7235803-7235822 Msa1007620:CDS 55.0%
CTGCCGGAAACACTCATCTC+GGG - chr7_1:7236099-7236118 Msa1007620:CDS 55.0%
TGCCGGAAACACTCATCTCG+GGG - chr7_1:7236100-7236119 Msa1007620:CDS 55.0%
TCCCCCGAGATGAGTGTTTC+CGG + chr7_1:7236105-7236124 None:intergenic 55.0%
AAACACTCATCTCGGGGGAG+AGG - chr7_1:7236106-7236125 Msa1007620:CDS 55.0%
CGCCGTTCTCAACCTCCTTA+AGG + chr7_1:7236213-7236232 None:intergenic 55.0%
CGCTGTCATCACCACCATTG+AGG - chr7_1:7236262-7236281 Msa1007620:CDS 55.0%
! CCGGATGAGGCTGTTGCTTA+TGG - chr7_1:7236527-7236546 Msa1007620:CDS 55.0%
GCCGGAAACACTCATCTCGG+GGG - chr7_1:7236101-7236120 Msa1007620:CDS 60.0%
TCTGTCCCATGTGCTCCTCG+CGG - chr7_1:7236815-7236834 Msa1007620:CDS 60.0%
TCCTCGCGGTCACCCTTTAG+AGG - chr7_1:7236829-7236848 Msa1007620:CDS 60.0%
! ACCTCTAAAGGGTGACCGCG+AGG + chr7_1:7236833-7236852 None:intergenic 60.0%
GCCGGAAACACTCATCTCGG+GGG - chr7_1:7236101-7236120 Msa1007620:CDS 60.0%
TCTGTCCCATGTGCTCCTCG+CGG - chr7_1:7236815-7236834 Msa1007620:CDS 60.0%
TCCTCGCGGTCACCCTTTAG+AGG - chr7_1:7236829-7236848 Msa1007620:CDS 60.0%
! ACCTCTAAAGGGTGACCGCG+AGG + chr7_1:7236833-7236852 None:intergenic 60.0%
! GGTGACCGCGAGGAGCACAT+GGG + chr7_1:7236823-7236842 None:intergenic 65.0%
! GGTGACCGCGAGGAGCACAT+GGG + chr7_1:7236823-7236842 None:intergenic 65.0%
! GGGTGACCGCGAGGAGCACA+TGG + chr7_1:7236824-7236843 None:intergenic 70.0%
! GGGTGACCGCGAGGAGCACA+TGG + chr7_1:7236824-7236843 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7235244 7237261 7235244 ID=Msa1007620;Name=Msa1007620
chr7_1 mRNA 7235244 7237261 7235244 ID=Msa1007620-mRNA-1;Parent=Msa1007620;Name=Msa1007620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|616
chr7_1 exon 7237042 7237261 7237042 ID=Msa1007620-mRNA-1:exon:2202;Parent=Msa1007620-mRNA-1
chr7_1 exon 7235244 7236874 7235244 ID=Msa1007620-mRNA-1:exon:2201;Parent=Msa1007620-mRNA-1
chr7_1 CDS 7237042 7237261 7237042 ID=Msa1007620-mRNA-1:cds;Parent=Msa1007620-mRNA-1
chr7_1 CDS 7235244 7236874 7235244 ID=Msa1007620-mRNA-1:cds;Parent=Msa1007620-mRNA-1
Gene Sequence

>Msa1007620

ATGGCAAAAAAGTATGAAGGACGTGCAGTGGGAATCGATCTTGGAACGACGTATTCGTGCGTTGCTGTGTGGCTAGATGAACACAACAGAGTTGAGATTATTCACAATGACCAAGGCAACAAAACCACACCTTCTTGTGTTGCTTTCACTGATGATCAAAGATTGGTTGGGGATGCAGCTAAGAATCAAGCTGCCACAAACCCTGAAAACACTGTTTTTGATGCAAAGAGGTTAATTGGTAGGAAGTTTGATGATTCTGTTGTTCAAAACGATATGATGCTCTGGCCATTCAAGGTCATTTCTGGAGTGAATGACAAACCCTTGATTTCGGTTAACTACAAGGGACAGGAGATGCACCTATGTGCTGAAGAAATCTCATCTATGGTTCTAACAAAGATGCGCGAGACTGCAGAGGCATTTTTGGAATTGCCTGTCAAGAATGCAGTTGTTACCGTACCTGCTTATTTCAATGATGCTCAGCGGAAAGCCACAATAGATGCTGGTGCTATTGCTGGTCTTAATATTATGCGGATAATCAATGAGCCTACTGCTGCAGCTATTGCGTATGGACTGGACAAGAGAACTAATTGTGTGGAGGAGCGTAATATTTTCATCTTTGACTTGGGTGGTGGGACTTTTGATGTGTCCCTCCTTACAATTAACGATAAGGTCTTTCAAGTTAAGGCTACTGCCGGAAACACTCATCTCGGGGGAGAGGACATTGATAATAGGATGGTGAACTACTTTGCACAGGAGTTTAAGAAGAAAAACAAGGTAGACATTAGTGAGAACTCAAGAGCCTTAAGGAGGTTGAGAACGGCGTGTGAAAGAGCAAAACGAATACTGTCTTTCGCTGTCATCACCACCATTGAGGTAGATTCTTTATTTCAAGGCTTTGACTTCTTTTCATCAATCACTCGTGCCAAGTTTGAGGAAATCAATATGGATCTTTTCACCGAGTGTTTGGAAACTGTTGAGAATTGTCTCGCTGATGCCAAAATGGAAAAAAGTGCTATACATGATGTCGTCCTTGTTGGTGGCTCGTCTAGAATTCCAAAAGTACAACAACTATTGCAGGAATTTTTCGCAGGGAAGGATCTGTGTAAGAGTATCAACCCGGATGAGGCTGTTGCTTATGGAGCTGCTGTGCAAGCTGCTTTGTTGAGTGAAGGCTTTAAAAATGTTCCAAAATTGGTGCTGCAAGATGTTGCTCCTTTGTCTCTTGGTATCTCAAAACAAGGTGACATCATGAGTGTGGTAATTCCTAGGAACACTAGCATTCCTATCAAGAAAACAAATGGTTATGCAACGGCTAATGATAACCAAACTTCAGCCACCATCGAAGTTTATGAGGGTGAGAGAGCAAGAGCTACTGACAACAATCTGCTTGGTTCTTTTAGTCTTTCTGTCCCATGTGCTCCTCGCGGTCACCCTTTAGAGGTATGCTTTACTATCAATGAAAATGGCATCTTAATTGTTTCTGCAAATGAAAAATCCACTGGTAGTATGAATGAAATTACAGTAACTAATGACAAAGAAAGATTGTCATCCCAAGAAATTACAAAAATGATCCAAGAAGCTGAGAATTACCGTGTCGAGGATGAAAAATTTCTAAGGAAGGCCAATGTAATGAATGCATTAGATTATTGTGTTTACAAGGTGAAAAATGCTTTGAAGAAGAAAGATGTGAATCTAAAGCTCTCTTCTCAAGAAAATGACGAGATCAATTCTGCAATCACAAAGGCCACAAGTTTACTTGATAGTACCCAACAGAGTGAAATAGATGTTCTTGAAAATCACCTGAAGGACCTTGAGAGTATGCTCCAACTCATTATAGGCAAATCTGTCTAG
Protein sequence

>Msa1007620

MAKKYEGRAVGIDLGTTYSCVAVWLDEHNRVEIIHNDQGNKTTPSCVAFTDDQRLVGDAAKNQAATNPENTVFDAKRLIGRKFDDSVVQNDMMLWPFKVISGVNDKPLISVNYKGQEMHLCAEEISSMVLTKMRETAEAFLELPVKNAVVTVPAYFNDAQRKATIDAGAIAGLNIMRIINEPTAAAIAYGLDKRTNCVEERNIFIFDLGGGTFDVSLLTINDKVFQVKATAGNTHLGGEDIDNRMVNYFAQEFKKKNKVDISENSRALRRLRTACERAKRILSFAVITTIEVDSLFQGFDFFSSITRAKFEEINMDLFTECLETVENCLADAKMEKSAIHDVVLVGGSSRIPKVQQLLQEFFAGKDLCKSINPDEAVAYGAAVQAALLSEGFKNVPKLVLQDVAPLSLGISKQGDIMSVVIPRNTSIPIKKTNGYATANDNQTSATIEVYEGERARATDNNLLGSFSLSVPCAPRGHPLEVCFTINENGILIVSANEKSTGSMNEITVTNDKERLSSQEITKMIQEAENYRVEDEKFLRKANVMNALDYCVYKVKNALKKKDVNLKLSSQENDEINSAITKATSLLDSTQQSEIDVLENHLKDLESMLQLIIGKSV*