AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1023450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023450 MtrunA17_Chr2g0331211 76.364 275 22 2 1 232 1 275 5.51e-145 408
Msa1023450 MtrunA17_Chr3g0077231 40.370 270 118 3 5 232 6 274 4.00e-64 202
Msa1023450 MtrunA17_Chr3g0077221 40.370 270 118 3 5 232 10 278 1.88e-61 196
Msa1023450 MtrunA17_Chr8g0363831 40.304 263 115 3 5 226 9 270 2.92e-59 190
Msa1023450 MtrunA17_Chr8g0364051 39.850 266 118 3 5 229 8 272 3.34e-59 190
Msa1023450 MtrunA17_Chr4g0039311 37.918 269 124 3 5 231 11 278 3.52e-56 182
Msa1023450 MtrunA17_Chr1g0155411 35.424 271 130 5 5 231 8 277 3.63e-54 177
Msa1023450 MtrunA17_Chr4g0039321 37.546 269 125 3 5 231 9 276 4.66e-54 177
Msa1023450 MtrunA17_Chr1g0155431 34.317 271 133 4 5 231 8 277 7.54e-51 169
Msa1023450 MtrunA17_Chr5g0431311 36.496 274 123 4 5 232 5 273 1.43e-50 167
Msa1023450 MtrunA17_Chr4g0002661 35.587 281 127 5 4 237 12 285 2.23e-50 167
Msa1023450 MtrunA17_Chr5g0423551 36.431 269 128 3 4 230 3 270 1.22e-49 165
Msa1023450 MtrunA17_Chr3g0106111 36.131 274 132 4 1 232 1 273 1.55e-48 162
Msa1023450 MtrunA17_Chr7g0245671 34.173 278 135 5 4 234 7 283 5.48e-48 161
Msa1023450 MtrunA17_Chr4g0048961 34.164 281 130 5 4 231 13 291 2.12e-47 160
Msa1023450 MtrunA17_Chr4g0002961 35.000 280 130 5 4 237 12 285 5.83e-47 158
Msa1023450 MtrunA17_Chr7g0245741 33.824 272 135 5 4 231 7 277 1.97e-46 157
Msa1023450 MtrunA17_Chr7g0245641 33.094 278 138 5 4 234 44 320 5.33e-46 157
Msa1023450 MtrunA17_Chr7g0245691 33.333 279 137 6 4 234 7 284 2.20e-44 152
Msa1023450 MtrunA17_Chr2g0333781 38.290 269 117 6 5 231 20 281 2.15e-42 147
Msa1023450 MtrunA17_Chr7g0245631 35.316 269 129 6 4 228 7 274 6.28e-42 145
Msa1023450 MtrunA17_Chr7g0245731 32.721 272 138 5 4 231 57 327 1.04e-41 146
Msa1023450 MtrunA17_Chr4g0042101 32.270 282 128 6 4 225 23 301 1.29e-39 140
Msa1023450 MtrunA17_Chr4g0001321 36.059 269 123 6 5 231 17 278 5.32e-39 138
Msa1023450 MtrunA17_Chr2g0291541 30.769 273 138 6 5 230 10 278 1.03e-36 132
Msa1023450 MtrunA17_Chr4g0010991 28.148 270 147 6 5 228 8 276 1.33e-29 113
Msa1023450 MtrunA17_Chr7g0245711 28.692 237 125 4 38 231 4 239 3.80e-28 108
Msa1023450 MtrunA17_Chr7g0275521 28.125 288 144 9 3 228 5 291 5.52e-24 98.6
Msa1023450 MtrunA17_Chr6g0450211 27.027 296 163 9 5 250 55 347 9.28e-23 95.5
Msa1023450 MtrunA17_Chr2g0282001 26.389 288 150 6 2 228 4 290 2.02e-22 94.4
Msa1023450 MtrunA17_Chr2g0281991 24.739 287 154 5 3 228 6 291 3.84e-21 90.5
Msa1023450 MtrunA17_Chr2g0282011 35.294 136 87 1 3 138 6 140 4.28e-20 87.8
Msa1023450 MtrunA17_Chr4g0039331 28.571 147 95 2 88 234 2 138 2.14e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023450 AT4G35420.1 58.456 272 69 3 4 232 7 277 3.34e-107 313
Msa1023450 AT1G51410.1 40.293 273 120 3 2 232 6 277 2.87e-59 191
Msa1023450 AT5G19440.1 41.481 270 115 4 5 232 10 278 5.46e-59 190
Msa1023450 AT1G09480.2 39.394 264 117 5 5 226 8 270 2.25e-57 186
Msa1023450 AT1G09480.1 39.394 264 117 5 5 226 55 317 6.90e-57 186
Msa1023450 AT5G58490.1 38.686 274 117 4 5 232 9 277 9.23e-56 181
Msa1023450 AT5G42800.1 38.745 271 121 6 5 231 8 277 1.95e-54 180
Msa1023450 AT1G09510.1 37.324 284 132 6 5 244 8 289 4.95e-54 177
Msa1023450 AT1G09490.1 38.346 266 121 5 5 228 8 272 2.38e-53 175
Msa1023450 AT1G66800.1 37.970 266 118 5 5 228 8 268 1.03e-52 173
Msa1023450 AT1G09500.3 36.364 264 126 3 5 226 8 271 4.69e-51 168
Msa1023450 AT1G09500.1 36.364 264 126 3 5 226 8 271 1.37e-50 168
Msa1023450 AT1G68540.1 34.944 269 128 4 7 230 6 272 1.56e-49 165
Msa1023450 AT1G25460.1 37.079 267 123 7 7 230 6 270 8.18e-46 155
Msa1023450 AT1G61720.1 32.734 278 132 4 4 228 12 287 1.02e-44 153
Msa1023450 AT2G02400.1 33.459 266 132 4 5 228 6 268 5.14e-44 151
Msa1023450 AT4G27250.2 32.601 273 123 6 6 225 14 278 2.59e-41 144
Msa1023450 AT2G33590.1 33.333 291 148 5 4 250 8 296 6.15e-41 143
Msa1023450 AT1G76470.1 35.484 279 135 5 4 238 6 283 8.15e-41 143
Msa1023450 AT2G33600.1 33.210 271 138 5 4 232 8 277 4.12e-40 141
Msa1023450 AT4G27250.1 31.317 281 126 6 6 225 14 288 5.87e-40 141
Msa1023450 AT2G45400.2 33.214 280 131 7 5 231 40 316 1.22e-39 140
Msa1023450 AT2G45400.1 33.214 280 131 7 5 231 40 316 1.71e-39 140
Msa1023450 AT1G09490.2 34.483 232 109 5 39 228 11 241 1.72e-37 133
Msa1023450 AT1G15950.5 36.000 275 127 7 5 237 13 280 4.55e-37 132
Msa1023450 AT1G15950.6 36.431 269 122 7 5 231 13 274 6.02e-37 131
Msa1023450 AT1G15950.3 36.431 269 122 7 5 231 13 274 1.71e-36 132
Msa1023450 AT1G15950.1 36.431 269 122 7 5 231 13 274 1.71e-36 132
Msa1023450 AT1G15950.4 36.431 269 122 7 5 231 13 274 1.94e-36 130
Msa1023450 AT1G15950.2 36.431 269 122 7 5 231 13 274 3.13e-36 131
Msa1023450 AT1G09500.2 32.759 232 114 3 39 228 8 239 2.08e-35 128
Msa1023450 AT1G80820.2 34.201 269 128 6 5 231 8 269 1.14e-33 123
Msa1023450 AT1G80820.1 34.201 269 128 6 5 231 8 269 3.40e-33 123
Msa1023450 AT2G45400.4 33.333 207 94 4 5 169 40 244 7.92e-27 104
Msa1023450 AT2G45400.3 30.081 246 118 7 37 231 17 259 8.65e-27 105
Msa1023450 AT2G23910.2 24.436 266 157 5 6 231 11 272 1.74e-23 96.3
Msa1023450 AT2G23910.3 24.436 266 157 5 6 231 11 272 2.06e-23 96.3
Msa1023450 AT2G23910.1 24.436 266 157 5 6 231 11 272 2.83e-23 96.3
Msa1023450 AT1G68540.2 35.455 110 58 2 132 230 58 165 2.72e-17 78.2
Msa1023450 AT1G15950.7 37.037 108 59 2 133 231 69 176 5.42e-11 61.2

Find 53 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATAAAGTTGAACATTTA+TGG 0.085081 7_1:+51206431 Msa1023450:CDS
ATTAGAACAGTTAGAGATTT+AGG 0.154769 7_1:+51206311 Msa1023450:CDS
TAGCTTCGACAATGCGATTA+TGG 0.197247 7_1:+51206513 Msa1023450:CDS
ATTCTACCATCATTCATAAT+TGG 0.235090 7_1:+51207280 Msa1023450:CDS
ACTAGTCCAAGCTGATTTAA+TGG 0.254779 7_1:+51206483 Msa1023450:CDS
CGCAAGGACACTCTACCTTT+TGG 0.261628 7_1:-51207635 None:intergenic
CCTTTGCAGTTCAGCAATAA+TGG 0.265699 7_1:+51207559 Msa1023450:CDS
TATGAGAACAAAGCCTCTTA+TGG 0.319877 7_1:+51207530 Msa1023450:CDS
AGTTGAACATTTATGGAAGT+TGG 0.340616 7_1:+51206438 Msa1023450:CDS
AGGATCATTTGATATATGAT+TGG 0.357612 7_1:-51206572 None:intergenic
CATAAATATGTTGGCAAGCT+AGG 0.359702 7_1:-51207304 None:intergenic
CAAAATACAGGCAGAAATCT+TGG 0.360481 7_1:+51206751 Msa1023450:intron
GAATGCAAAGTATGTGTAAC+AGG 0.368238 7_1:+51206227 Msa1023450:CDS
AGCTTCGACAATGCGATTAT+GGG 0.388369 7_1:+51206514 Msa1023450:CDS
AATAATGGATAATGATGATT+TGG 0.393430 7_1:+51207574 Msa1023450:CDS
GGATCATTTGATATATGATT+GGG 0.413478 7_1:-51206571 None:intergenic
GTATGTGTAACAGGAGCTTC+AGG 0.422762 7_1:+51206236 Msa1023450:CDS
TTTCTTCCATTAAATCAGCT+TGG 0.450929 7_1:-51206489 None:intergenic
AGAAATTTCAATGGCATGGA+AGG 0.468480 7_1:+51207459 Msa1023450:intron
GCAAAGGTACCTACCATAAG+AGG 0.475649 7_1:-51207543 None:intergenic
AACACAACTCGAACAAGGGC+TGG 0.477786 7_1:-51206824 None:intergenic
TTTGATATATGATTGGGTAC+TGG 0.478192 7_1:-51206565 None:intergenic
ATGCTAGCAAATCGTTATCC+TGG 0.493557 7_1:+51207602 Msa1023450:CDS
TAGAGTGTCCTTGCGATTCA+CGG 0.496749 7_1:+51207643 Msa1023450:CDS
AGGCTTTGTTCTCATAAAGA+AGG 0.497165 7_1:-51207523 None:intergenic
ATTTCAATGGCATGGAAGGA+TGG 0.500563 7_1:+51207463 Msa1023450:CDS
TTTAGCGTACCTTGGACCGC+TGG 0.513714 7_1:-51206776 None:intergenic
TTTCAATGGCATGGAAGGAT+GGG 0.514191 7_1:+51207464 Msa1023450:CDS
TCATATATCAAATGATCCTA+AGG 0.522536 7_1:+51206576 Msa1023450:CDS
CCTGGTTTCCCATTCCCAAA+AGG 0.524676 7_1:+51207620 Msa1023450:CDS
ACATAGAAATTTCAATGGCA+TGG 0.525082 7_1:+51207455 Msa1023450:intron
GCAACACATTTAGCGTACCT+TGG 0.529211 7_1:-51206784 None:intergenic
TGGGAATATTGCAATGAGAA+AGG 0.533022 7_1:+51207241 Msa1023450:CDS
CTAGGTCCAATTATGAATGA+TGG 0.539988 7_1:-51207286 None:intergenic
GGGAAACATAGAAATTTCAA+TGG 0.546835 7_1:+51207450 Msa1023450:intron
GCAGTGGAACATAAATATGT+TGG 0.548336 7_1:-51207313 None:intergenic
TGAACATTTATGGAAGTTGG+AGG 0.548932 7_1:+51206441 Msa1023450:CDS
CCATTATTGCTGAACTGCAA+AGG 0.550463 7_1:-51207559 None:intergenic
CAATGAGAAAGGAATAGACT+TGG 0.556122 7_1:+51207252 Msa1023450:CDS
CGGCTAACACAACTCGAACA+AGG 0.563967 7_1:-51206829 None:intergenic
ATCTTGGAACCAGCGGTCCA+AGG 0.581499 7_1:+51206767 Msa1023450:CDS
ACTAGTTCGAGTCTTTCTGT+TGG 0.581772 7_1:-51206466 None:intergenic
GGCTAACACAACTCGAACAA+GGG 0.585276 7_1:-51206828 None:intergenic
GCCTAGCACATCAGATGCAG+TGG 0.588657 7_1:-51207329 None:intergenic
AGGATAACGATTTGCTAGCA+TGG 0.597463 7_1:-51207600 None:intergenic
GAACATTTATGGAAGTTGGA+GGG 0.598986 7_1:+51206442 Msa1023450:CDS
AATGCGATTATGGGATGCAA+AGG 0.600616 7_1:+51206523 Msa1023450:CDS
AGAACAAAGCCTCTTATGGT+AGG 0.618367 7_1:+51207534 Msa1023450:CDS
GTGAACCACCGTGAATCGCA+AGG 0.626333 7_1:-51207651 None:intergenic
TATATGATTGGGTACTGGAG+AGG 0.647630 7_1:-51206560 None:intergenic
GGCAGAAATCTTGGAACCAG+CGG 0.649586 7_1:+51206760 Msa1023450:intron
AGTGTCCTTGCGATTCACGG+TGG 0.704946 7_1:+51207646 Msa1023450:CDS
ACTAACAGCTGAAGATGACG+CGG 0.706152 7_1:-51206849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCATTTATATTTTTCAT+AGG + chr7_1:51206605-51206624 Msa1023450:intron 10.0%
!!! ATTTCATTTATATTTTTCAT+AGG + chr7_1:51206605-51206624 Msa1023450:intron 10.0%
!! TACAAATATATAATTACTTG+AGG - chr7_1:51206963-51206982 None:intergenic 15.0%
!! GTAATAGTAATACTATAAAA+GGG - chr7_1:51207046-51207065 None:intergenic 15.0%
!! AGTAATAGTAATACTATAAA+AGG - chr7_1:51207047-51207066 None:intergenic 15.0%
!!! TGTTAGTTTAATTAGAAATA+TGG - chr7_1:51207429-51207448 None:intergenic 15.0%
!!! ATATTTCTAATTAAACTAAC+AGG + chr7_1:51207428-51207447 Msa1023450:intron 15.0%
!!! TATTTCTAATTAAACTAACA+GGG + chr7_1:51207429-51207448 Msa1023450:intron 15.0%
!! TACAAATATATAATTACTTG+AGG - chr7_1:51206963-51206982 None:intergenic 15.0%
!! GTAATAGTAATACTATAAAA+GGG - chr7_1:51207046-51207065 None:intergenic 15.0%
!! AGTAATAGTAATACTATAAA+AGG - chr7_1:51207047-51207066 None:intergenic 15.0%
!!! TGTTAGTTTAATTAGAAATA+TGG - chr7_1:51207429-51207448 None:intergenic 15.0%
!!! ATATTTCTAATTAAACTAAC+AGG + chr7_1:51207428-51207447 Msa1023450:intron 15.0%
!!! TATTTCTAATTAAACTAACA+GGG + chr7_1:51207429-51207448 Msa1023450:intron 15.0%
!! ACAAACATGTTATTGAATTA+TGG + chr7_1:51207177-51207196 Msa1023450:intron 20.0%
!! ATTTCTAATTAAACTAACAG+GGG + chr7_1:51207430-51207449 Msa1023450:intron 20.0%
!!! AATAATGGATAATGATGATT+TGG + chr7_1:51207574-51207593 Msa1023450:CDS 20.0%
!! ACAAACATGTTATTGAATTA+TGG + chr7_1:51207177-51207196 Msa1023450:intron 20.0%
!! ATTTCTAATTAAACTAACAG+GGG + chr7_1:51207430-51207449 Msa1023450:intron 20.0%
!!! AATAATGGATAATGATGATT+TGG + chr7_1:51207574-51207593 Msa1023450:CDS 20.0%
! ATTAGAACAGTTAGAGATTT+AGG + chr7_1:51206311-51206330 Msa1023450:CDS 25.0%
! GTGAAAAGTGAAAATACATT+TGG - chr7_1:51206357-51206376 None:intergenic 25.0%
! CCTGCAAGTATATATAAAAA+TGG - chr7_1:51206406-51206425 None:intergenic 25.0%
!!! CCATTTTTATATATACTTGC+AGG + chr7_1:51206403-51206422 Msa1023450:intron 25.0%
! AGCATAAAGTTGAACATTTA+TGG + chr7_1:51206431-51206450 Msa1023450:CDS 25.0%
! GGATCATTTGATATATGATT+GGG - chr7_1:51206574-51206593 None:intergenic 25.0%
! AGGATCATTTGATATATGAT+TGG - chr7_1:51206575-51206594 None:intergenic 25.0%
! TCATATATCAAATGATCCTA+AGG + chr7_1:51206576-51206595 Msa1023450:CDS 25.0%
! TAAATGAAATATCACACCTT+AGG - chr7_1:51206595-51206614 None:intergenic 25.0%
!! TCAATTTTTGTCCAAAATAC+AGG + chr7_1:51206739-51206758 Msa1023450:intron 25.0%
! AGATAATGAAATGTAATTCG+AGG + chr7_1:51207098-51207117 Msa1023450:intron 25.0%
! ATTCTACCATCATTCATAAT+TGG + chr7_1:51207280-51207299 Msa1023450:CDS 25.0%
! ATTAGAACAGTTAGAGATTT+AGG + chr7_1:51206311-51206330 Msa1023450:CDS 25.0%
! GTGAAAAGTGAAAATACATT+TGG - chr7_1:51206357-51206376 None:intergenic 25.0%
! CCTGCAAGTATATATAAAAA+TGG - chr7_1:51206406-51206425 None:intergenic 25.0%
!!! CCATTTTTATATATACTTGC+AGG + chr7_1:51206403-51206422 Msa1023450:intron 25.0%
! AGCATAAAGTTGAACATTTA+TGG + chr7_1:51206431-51206450 Msa1023450:CDS 25.0%
! GGATCATTTGATATATGATT+GGG - chr7_1:51206574-51206593 None:intergenic 25.0%
! AGGATCATTTGATATATGAT+TGG - chr7_1:51206575-51206594 None:intergenic 25.0%
! TCATATATCAAATGATCCTA+AGG + chr7_1:51206576-51206595 Msa1023450:CDS 25.0%
! TAAATGAAATATCACACCTT+AGG - chr7_1:51206595-51206614 None:intergenic 25.0%
!! TCAATTTTTGTCCAAAATAC+AGG + chr7_1:51206739-51206758 Msa1023450:intron 25.0%
! AGATAATGAAATGTAATTCG+AGG + chr7_1:51207098-51207117 Msa1023450:intron 25.0%
! ATTCTACCATCATTCATAAT+TGG + chr7_1:51207280-51207299 Msa1023450:CDS 25.0%
AGTTGAACATTTATGGAAGT+TGG + chr7_1:51206438-51206457 Msa1023450:CDS 30.0%
TTTCTTCCATTAAATCAGCT+TGG - chr7_1:51206492-51206511 None:intergenic 30.0%
TTTGATATATGATTGGGTAC+TGG - chr7_1:51206568-51206587 None:intergenic 30.0%
TGATTAATGCATGAGCTTAT+AGG - chr7_1:51206647-51206666 None:intergenic 30.0%
TAATCAAAATCCTCACATCA+TGG + chr7_1:51206661-51206680 Msa1023450:intron 30.0%
CATGTTATTGAATTATGGCA+TGG + chr7_1:51207182-51207201 Msa1023450:intron 30.0%
GGGAAACATAGAAATTTCAA+TGG + chr7_1:51207450-51207469 Msa1023450:intron 30.0%
ACATAGAAATTTCAATGGCA+TGG + chr7_1:51207455-51207474 Msa1023450:intron 30.0%
AGTTGAACATTTATGGAAGT+TGG + chr7_1:51206438-51206457 Msa1023450:CDS 30.0%
TTTCTTCCATTAAATCAGCT+TGG - chr7_1:51206492-51206511 None:intergenic 30.0%
TTTGATATATGATTGGGTAC+TGG - chr7_1:51206568-51206587 None:intergenic 30.0%
TGATTAATGCATGAGCTTAT+AGG - chr7_1:51206647-51206666 None:intergenic 30.0%
TAATCAAAATCCTCACATCA+TGG + chr7_1:51206661-51206680 Msa1023450:intron 30.0%
CATGTTATTGAATTATGGCA+TGG + chr7_1:51207182-51207201 Msa1023450:intron 30.0%
GGGAAACATAGAAATTTCAA+TGG + chr7_1:51207450-51207469 Msa1023450:intron 30.0%
ACATAGAAATTTCAATGGCA+TGG + chr7_1:51207455-51207474 Msa1023450:intron 30.0%
GAATGCAAAGTATGTGTAAC+AGG + chr7_1:51206227-51206246 Msa1023450:CDS 35.0%
! ATGAAGCGACTTCTTTTGTT+TGG + chr7_1:51206278-51206297 Msa1023450:CDS 35.0%
TGAACATTTATGGAAGTTGG+AGG + chr7_1:51206441-51206460 Msa1023450:CDS 35.0%
GAACATTTATGGAAGTTGGA+GGG + chr7_1:51206442-51206461 Msa1023450:CDS 35.0%
! ACTAGTCCAAGCTGATTTAA+TGG + chr7_1:51206483-51206502 Msa1023450:CDS 35.0%
! CAAGATTTCTGCCTGTATTT+TGG - chr7_1:51206753-51206772 None:intergenic 35.0%
CAAAATACAGGCAGAAATCT+TGG + chr7_1:51206751-51206770 Msa1023450:intron 35.0%
TGGGAATATTGCAATGAGAA+AGG + chr7_1:51207241-51207260 Msa1023450:CDS 35.0%
CAATGAGAAAGGAATAGACT+TGG + chr7_1:51207252-51207271 Msa1023450:CDS 35.0%
CTAGGTCCAATTATGAATGA+TGG - chr7_1:51207289-51207308 None:intergenic 35.0%
CATAAATATGTTGGCAAGCT+AGG - chr7_1:51207307-51207326 None:intergenic 35.0%
GCAGTGGAACATAAATATGT+TGG - chr7_1:51207316-51207335 None:intergenic 35.0%
AGAAATTTCAATGGCATGGA+AGG + chr7_1:51207459-51207478 Msa1023450:intron 35.0%
!! AGGCTTTGTTCTCATAAAGA+AGG - chr7_1:51207526-51207545 None:intergenic 35.0%
TATGAGAACAAAGCCTCTTA+TGG + chr7_1:51207530-51207549 Msa1023450:CDS 35.0%
GAATGCAAAGTATGTGTAAC+AGG + chr7_1:51206227-51206246 Msa1023450:CDS 35.0%
! ATGAAGCGACTTCTTTTGTT+TGG + chr7_1:51206278-51206297 Msa1023450:CDS 35.0%
TGAACATTTATGGAAGTTGG+AGG + chr7_1:51206441-51206460 Msa1023450:CDS 35.0%
GAACATTTATGGAAGTTGGA+GGG + chr7_1:51206442-51206461 Msa1023450:CDS 35.0%
! ACTAGTCCAAGCTGATTTAA+TGG + chr7_1:51206483-51206502 Msa1023450:CDS 35.0%
! CAAGATTTCTGCCTGTATTT+TGG - chr7_1:51206753-51206772 None:intergenic 35.0%
CAAAATACAGGCAGAAATCT+TGG + chr7_1:51206751-51206770 Msa1023450:intron 35.0%
TGGGAATATTGCAATGAGAA+AGG + chr7_1:51207241-51207260 Msa1023450:CDS 35.0%
CAATGAGAAAGGAATAGACT+TGG + chr7_1:51207252-51207271 Msa1023450:CDS 35.0%
CTAGGTCCAATTATGAATGA+TGG - chr7_1:51207289-51207308 None:intergenic 35.0%
CATAAATATGTTGGCAAGCT+AGG - chr7_1:51207307-51207326 None:intergenic 35.0%
GCAGTGGAACATAAATATGT+TGG - chr7_1:51207316-51207335 None:intergenic 35.0%
AGAAATTTCAATGGCATGGA+AGG + chr7_1:51207459-51207478 Msa1023450:intron 35.0%
!! AGGCTTTGTTCTCATAAAGA+AGG - chr7_1:51207526-51207545 None:intergenic 35.0%
TATGAGAACAAAGCCTCTTA+TGG + chr7_1:51207530-51207549 Msa1023450:CDS 35.0%
ACTAGTTCGAGTCTTTCTGT+TGG - chr7_1:51206469-51206488 None:intergenic 40.0%
TAGCTTCGACAATGCGATTA+TGG + chr7_1:51206513-51206532 Msa1023450:CDS 40.0%
AGCTTCGACAATGCGATTAT+GGG + chr7_1:51206514-51206533 Msa1023450:CDS 40.0%
AATGCGATTATGGGATGCAA+AGG + chr7_1:51206523-51206542 Msa1023450:CDS 40.0%
!! TATATGATTGGGTACTGGAG+AGG - chr7_1:51206563-51206582 None:intergenic 40.0%
TGAGCTTATAGGTTGTGACA+TGG - chr7_1:51206636-51206655 None:intergenic 40.0%
TGTATAGTCTCCATGATGTG+AGG - chr7_1:51206674-51206693 None:intergenic 40.0%
GACTCGTCTATTGGTATGTT+TGG - chr7_1:51206893-51206912 None:intergenic 40.0%
TACCAATAGACGAGTCATCT+TGG + chr7_1:51206897-51206916 Msa1023450:intron 40.0%
TACTTGAGGAAATGTGTACC+TGG - chr7_1:51206949-51206968 None:intergenic 40.0%
ATTTCAATGGCATGGAAGGA+TGG + chr7_1:51207463-51207482 Msa1023450:CDS 40.0%
TTTCAATGGCATGGAAGGAT+GGG + chr7_1:51207464-51207483 Msa1023450:CDS 40.0%
AGAACAAAGCCTCTTATGGT+AGG + chr7_1:51207534-51207553 Msa1023450:CDS 40.0%
CCATTATTGCTGAACTGCAA+AGG - chr7_1:51207562-51207581 None:intergenic 40.0%
CCTTTGCAGTTCAGCAATAA+TGG + chr7_1:51207559-51207578 Msa1023450:CDS 40.0%
!! AGGATAACGATTTGCTAGCA+TGG - chr7_1:51207603-51207622 None:intergenic 40.0%
ATGCTAGCAAATCGTTATCC+TGG + chr7_1:51207602-51207621 Msa1023450:CDS 40.0%
!! ACACTCTACCTTTTGGGAAT+GGG - chr7_1:51207631-51207650 None:intergenic 40.0%
ACTAGTTCGAGTCTTTCTGT+TGG - chr7_1:51206469-51206488 None:intergenic 40.0%
TAGCTTCGACAATGCGATTA+TGG + chr7_1:51206513-51206532 Msa1023450:CDS 40.0%
AGCTTCGACAATGCGATTAT+GGG + chr7_1:51206514-51206533 Msa1023450:CDS 40.0%
AATGCGATTATGGGATGCAA+AGG + chr7_1:51206523-51206542 Msa1023450:CDS 40.0%
!! TATATGATTGGGTACTGGAG+AGG - chr7_1:51206563-51206582 None:intergenic 40.0%
TGAGCTTATAGGTTGTGACA+TGG - chr7_1:51206636-51206655 None:intergenic 40.0%
TGTATAGTCTCCATGATGTG+AGG - chr7_1:51206674-51206693 None:intergenic 40.0%
GACTCGTCTATTGGTATGTT+TGG - chr7_1:51206893-51206912 None:intergenic 40.0%
TACCAATAGACGAGTCATCT+TGG + chr7_1:51206897-51206916 Msa1023450:intron 40.0%
TACTTGAGGAAATGTGTACC+TGG - chr7_1:51206949-51206968 None:intergenic 40.0%
ATTTCAATGGCATGGAAGGA+TGG + chr7_1:51207463-51207482 Msa1023450:CDS 40.0%
TTTCAATGGCATGGAAGGAT+GGG + chr7_1:51207464-51207483 Msa1023450:CDS 40.0%
AGAACAAAGCCTCTTATGGT+AGG + chr7_1:51207534-51207553 Msa1023450:CDS 40.0%
CCATTATTGCTGAACTGCAA+AGG - chr7_1:51207562-51207581 None:intergenic 40.0%
CCTTTGCAGTTCAGCAATAA+TGG + chr7_1:51207559-51207578 Msa1023450:CDS 40.0%
!! AGGATAACGATTTGCTAGCA+TGG - chr7_1:51207603-51207622 None:intergenic 40.0%
ATGCTAGCAAATCGTTATCC+TGG + chr7_1:51207602-51207621 Msa1023450:CDS 40.0%
!! ACACTCTACCTTTTGGGAAT+GGG - chr7_1:51207631-51207650 None:intergenic 40.0%
GTATGTGTAACAGGAGCTTC+AGG + chr7_1:51206236-51206255 Msa1023450:CDS 45.0%
! AACAGGAGCTTCAGGCTTTT+TGG + chr7_1:51206244-51206263 Msa1023450:CDS 45.0%
!!! CTTCAGGCTTTTTGGCTTCT+TGG + chr7_1:51206252-51206271 Msa1023450:CDS 45.0%
GCAACACATTTAGCGTACCT+TGG - chr7_1:51206787-51206806 None:intergenic 45.0%
GGCTAACACAACTCGAACAA+GGG - chr7_1:51206831-51206850 None:intergenic 45.0%
ACTAACAGCTGAAGATGACG+CGG - chr7_1:51206852-51206871 None:intergenic 45.0%
CTCCAAGATGACTCGTCTAT+TGG - chr7_1:51206902-51206921 None:intergenic 45.0%
GGAATTGTGTGAGAAACTCC+AGG + chr7_1:51206928-51206947 Msa1023450:intron 45.0%
ACTGGCAGAAAAAGCAGCTT+GGG + chr7_1:51207222-51207241 Msa1023450:CDS 45.0%
! GATGTGCTAGGCTTGTTCAA+AGG + chr7_1:51207340-51207359 Msa1023450:intron 45.0%
!! GCAAAGGTACCTACCATAAG+AGG - chr7_1:51207546-51207565 None:intergenic 45.0%
!! GACACTCTACCTTTTGGGAA+TGG - chr7_1:51207632-51207651 None:intergenic 45.0%
! GCAAGGACACTCTACCTTTT+GGG - chr7_1:51207637-51207656 None:intergenic 45.0%
! TAGAGTGTCCTTGCGATTCA+CGG + chr7_1:51207643-51207662 Msa1023450:CDS 45.0%
GTATGTGTAACAGGAGCTTC+AGG + chr7_1:51206236-51206255 Msa1023450:CDS 45.0%
! AACAGGAGCTTCAGGCTTTT+TGG + chr7_1:51206244-51206263 Msa1023450:CDS 45.0%
!!! CTTCAGGCTTTTTGGCTTCT+TGG + chr7_1:51206252-51206271 Msa1023450:CDS 45.0%
GCAACACATTTAGCGTACCT+TGG - chr7_1:51206787-51206806 None:intergenic 45.0%
GGCTAACACAACTCGAACAA+GGG - chr7_1:51206831-51206850 None:intergenic 45.0%
ACTAACAGCTGAAGATGACG+CGG - chr7_1:51206852-51206871 None:intergenic 45.0%
CTCCAAGATGACTCGTCTAT+TGG - chr7_1:51206902-51206921 None:intergenic 45.0%
GGAATTGTGTGAGAAACTCC+AGG + chr7_1:51206928-51206947 Msa1023450:intron 45.0%
ACTGGCAGAAAAAGCAGCTT+GGG + chr7_1:51207222-51207241 Msa1023450:CDS 45.0%
! GATGTGCTAGGCTTGTTCAA+AGG + chr7_1:51207340-51207359 Msa1023450:intron 45.0%
!! GCAAAGGTACCTACCATAAG+AGG - chr7_1:51207546-51207565 None:intergenic 45.0%
!! GACACTCTACCTTTTGGGAA+TGG - chr7_1:51207632-51207651 None:intergenic 45.0%
! GCAAGGACACTCTACCTTTT+GGG - chr7_1:51207637-51207656 None:intergenic 45.0%
! TAGAGTGTCCTTGCGATTCA+CGG + chr7_1:51207643-51207662 Msa1023450:CDS 45.0%
!!! TTTTTTTTATATTTTACAAA+TGG + chr7_1:51207134-51207153 Msa1023450:intron 5.0%
!!! TTTTTTTTATATTTTACAAA+TGG + chr7_1:51207134-51207153 Msa1023450:intron 5.0%
GGCAGAAATCTTGGAACCAG+CGG + chr7_1:51206760-51206779 Msa1023450:intron 50.0%
AACACAACTCGAACAAGGGC+TGG - chr7_1:51206827-51206846 None:intergenic 50.0%
CGGCTAACACAACTCGAACA+AGG - chr7_1:51206832-51206851 None:intergenic 50.0%
CGAGTCATCTTGGAGCTCAT+AGG + chr7_1:51206907-51206926 Msa1023450:intron 50.0%
GTACCCAGTCTCAAAGACAC+TGG + chr7_1:51207204-51207223 Msa1023450:intron 50.0%
!! CTGCCAGTGTCTTTGAGACT+GGG - chr7_1:51207210-51207229 None:intergenic 50.0%
!! TCTGCCAGTGTCTTTGAGAC+TGG - chr7_1:51207211-51207230 None:intergenic 50.0%
CACTGGCAGAAAAAGCAGCT+TGG + chr7_1:51207221-51207240 Msa1023450:CDS 50.0%
TCCACTGCATCTGATGTGCT+AGG + chr7_1:51207328-51207347 Msa1023450:intron 50.0%
!! CCTTTTGGGAATGGGAAACC+AGG - chr7_1:51207623-51207642 None:intergenic 50.0%
CCTGGTTTCCCATTCCCAAA+AGG + chr7_1:51207620-51207639 Msa1023450:CDS 50.0%
! CGCAAGGACACTCTACCTTT+TGG - chr7_1:51207638-51207657 None:intergenic 50.0%
GGCAGAAATCTTGGAACCAG+CGG + chr7_1:51206760-51206779 Msa1023450:intron 50.0%
AACACAACTCGAACAAGGGC+TGG - chr7_1:51206827-51206846 None:intergenic 50.0%
CGGCTAACACAACTCGAACA+AGG - chr7_1:51206832-51206851 None:intergenic 50.0%
CGAGTCATCTTGGAGCTCAT+AGG + chr7_1:51206907-51206926 Msa1023450:intron 50.0%
GTACCCAGTCTCAAAGACAC+TGG + chr7_1:51207204-51207223 Msa1023450:intron 50.0%
!! CTGCCAGTGTCTTTGAGACT+GGG - chr7_1:51207210-51207229 None:intergenic 50.0%
!! TCTGCCAGTGTCTTTGAGAC+TGG - chr7_1:51207211-51207230 None:intergenic 50.0%
CACTGGCAGAAAAAGCAGCT+TGG + chr7_1:51207221-51207240 Msa1023450:CDS 50.0%
TCCACTGCATCTGATGTGCT+AGG + chr7_1:51207328-51207347 Msa1023450:intron 50.0%
!! CCTTTTGGGAATGGGAAACC+AGG - chr7_1:51207623-51207642 None:intergenic 50.0%
CCTGGTTTCCCATTCCCAAA+AGG + chr7_1:51207620-51207639 Msa1023450:CDS 50.0%
! CGCAAGGACACTCTACCTTT+TGG - chr7_1:51207638-51207657 None:intergenic 50.0%
ATCTTGGAACCAGCGGTCCA+AGG + chr7_1:51206767-51206786 Msa1023450:CDS 55.0%
TTTAGCGTACCTTGGACCGC+TGG - chr7_1:51206779-51206798 None:intergenic 55.0%
GCCTAGCACATCAGATGCAG+TGG - chr7_1:51207332-51207351 None:intergenic 55.0%
AGTGTCCTTGCGATTCACGG+TGG + chr7_1:51207646-51207665 Msa1023450:CDS 55.0%
GTGAACCACCGTGAATCGCA+AGG - chr7_1:51207654-51207673 None:intergenic 55.0%
ATCTTGGAACCAGCGGTCCA+AGG + chr7_1:51206767-51206786 Msa1023450:CDS 55.0%
TTTAGCGTACCTTGGACCGC+TGG - chr7_1:51206779-51206798 None:intergenic 55.0%
GCCTAGCACATCAGATGCAG+TGG - chr7_1:51207332-51207351 None:intergenic 55.0%
AGTGTCCTTGCGATTCACGG+TGG + chr7_1:51207646-51207665 Msa1023450:CDS 55.0%
GTGAACCACCGTGAATCGCA+AGG - chr7_1:51207654-51207673 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 51206224 51207697 51206224 ID=Msa1023450;Name=Msa1023450
chr7_1 mRNA 51206224 51207697 51206224 ID=Msa1023450-mRNA-1;Parent=Msa1023450;Name=Msa1023450-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|0.5|0.8|5|0|250
chr7_1 exon 51206224 51206332 51206224 ID=Msa1023450-mRNA-1:exon:10063;Parent=Msa1023450-mRNA-1
chr7_1 exon 51206425 51206597 51206425 ID=Msa1023450-mRNA-1:exon:10064;Parent=Msa1023450-mRNA-1
chr7_1 exon 51206761 51206871 51206761 ID=Msa1023450-mRNA-1:exon:10065;Parent=Msa1023450-mRNA-1
chr7_1 exon 51207220 51207342 51207220 ID=Msa1023450-mRNA-1:exon:10066;Parent=Msa1023450-mRNA-1
chr7_1 exon 51207461 51207697 51207461 ID=Msa1023450-mRNA-1:exon:10067;Parent=Msa1023450-mRNA-1
chr7_1 CDS 51206224 51206332 51206224 ID=Msa1023450-mRNA-1:cds;Parent=Msa1023450-mRNA-1
chr7_1 CDS 51206425 51206597 51206425 ID=Msa1023450-mRNA-1:cds;Parent=Msa1023450-mRNA-1
chr7_1 CDS 51206761 51206871 51206761 ID=Msa1023450-mRNA-1:cds;Parent=Msa1023450-mRNA-1
chr7_1 CDS 51207220 51207342 51207220 ID=Msa1023450-mRNA-1:cds;Parent=Msa1023450-mRNA-1
chr7_1 CDS 51207461 51207697 51207461 ID=Msa1023450-mRNA-1:cds;Parent=Msa1023450-mRNA-1
Gene Sequence

>Msa1023450

ATGGAATGCAAAGTATGTGTAACAGGAGCTTCAGGCTTTTTGGCTTCTTGGCTTATGAAGCGACTTCTTTTGTTTGGATATCATGTCATTAGAACAGTTAGAGATTTAGGTAAGAAGCATAAAGTTGAACATTTATGGAAGTTGGAGGGACCAACAGAAAGACTCGAACTAGTCCAAGCTGATTTAATGGAAGAAAATAGCTTCGACAATGCGATTATGGGATGCAAAGGCGTCTTTCACATTGCCTCTCCAGTACCCAATCATATATCAAATGATCCTAAGGCAGAAATCTTGGAACCAGCGGTCCAAGGTACGCTAAATGTGTTGCGTTCTTGTCGAAAGAATCCAGCCCTTGTTCGAGTTGTGTTAGCCGCGTCATCTTCAGCTGTTAGTACACTGGCAGAAAAAGCAGCTTGGGAATATTGCAATGAGAAAGGAATAGACTTGGTGACTATTCTACCATCATTCATAATTGGACCTAGCTTGCCAACATATTTATGTTCCACTGCATCTGATAAATTTCAATGGCATGGAAGGATGGGATATGTTCATATTGATGATATTGCATTTAGTCACATCCTTCTTTATGAGAACAAAGCCTCTTATGGTAGGTACCTTTGCAGTTCAGCAATAATGGATAATGATGATTTGGTTGCCATGCTAGCAAATCGTTATCCTGGTTTCCCATTCCCAAAAGGTAGAGTGTCCTTGCGATTCACGGTGGTTCACAATTCAGCTCTCCTAAAATTGTGA

Protein sequence

>Msa1023450

MECKVCVTGASGFLASWLMKRLLLFGYHVIRTVRDLGKKHKVEHLWKLEGPTERLELVQADLMEENSFDNAIMGCKGVFHIASPVPNHISNDPKAEILEPAVQGTLNVLRSCRKNPALVRVVLAASSSAVSTLAEKAAWEYCNEKGIDLVTILPSFIIGPSLPTYLCSTASDKFQWHGRMGYVHIDDIAFSHILLYENKASYGRYLCSSAIMDNDDLVAMLANRYPGFPFPKGRVSLRFTVVHNSALLKL*