AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1136420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136420 MtrunA17_Chr7g0217971 88.312 616 48 1 1 616 1 592 0.0 1081
Msa1136420 MtrunA17_Chr5g0427901 79.459 628 117 2 1 616 1 628 0.0 1021
Msa1136420 MtrunA17_Chr7g0223801 79.545 616 125 1 1 616 1 615 0.0 1009
Msa1136420 MtrunA17_Chr7g0221661 76.998 613 140 1 1 612 1 613 0.0 982
Msa1136420 MtrunA17_Chr2g0298851 77.508 618 135 4 1 615 1 617 0.0 981
Msa1136420 MtrunA17_Chr4g0040931 75.450 611 148 2 1 609 1 611 0.0 947
Msa1136420 MtrunA17_Chr2g0293581 73.667 619 159 4 1 615 1 619 0.0 944
Msa1136420 MtrunA17_Chr7g0225671 75.122 615 148 4 3 615 12 623 0.0 935
Msa1136420 MtrunA17_Chr7g0223721 73.258 617 163 2 1 615 1 617 0.0 932
Msa1136420 MtrunA17_Chr7g0233311 72.654 618 166 2 1 615 1 618 0.0 932
Msa1136420 MtrunA17_Chr2g0298861 71.905 630 163 4 1 616 1 630 0.0 928
Msa1136420 MtrunA17_Chr7g0223851 74.068 617 158 2 1 615 10 626 0.0 927
Msa1136420 MtrunA17_Chr8g0390821 71.045 670 125 7 1 616 1 655 0.0 922
Msa1136420 MtrunA17_Chr7g0223821 72.006 618 166 3 1 612 1 617 0.0 888
Msa1136420 MtrunA17_Chr7g0223821 58.333 84 32 1 532 612 620 703 1.06e-18 90.5
Msa1136420 MtrunA17_Chr2g0287631 71.567 619 173 3 1 616 1 619 0.0 885
Msa1136420 MtrunA17_Chr7g0215261 71.176 621 139 6 1 616 1 586 0.0 884
Msa1136420 MtrunA17_Chr7g0223831 71.290 620 145 6 1 616 1 591 0.0 882
Msa1136420 MtrunA17_Chr7g0233301 69.579 618 154 3 1 615 1 587 0.0 873
Msa1136420 MtrunA17_Chr4g0012541 69.530 617 177 3 1 615 1 608 0.0 862
Msa1136420 MtrunA17_Chr8g0350731 66.287 614 207 0 1 614 29 642 0.0 851
Msa1136420 MtrunA17_Chr7g0223031 67.769 605 195 0 1 605 1 605 0.0 848
Msa1136420 MtrunA17_Chr7g0228281 69.692 617 140 5 1 615 62 633 0.0 847
Msa1136420 MtrunA17_Chr7g0223711 65.041 615 214 1 1 614 1 615 0.0 846
Msa1136420 MtrunA17_Chr7g0223621 66.338 609 205 0 1 609 1 609 0.0 842
Msa1136420 MtrunA17_Chr7g0223731 66.287 614 207 0 1 614 1 614 0.0 836
Msa1136420 MtrunA17_Chr7g0223781 66.558 613 202 2 1 612 1 611 0.0 834
Msa1136420 MtrunA17_Chr7g0223751 64.495 614 218 0 1 614 1 614 0.0 833
Msa1136420 MtrunA17_Chr7g0223741 67.677 594 191 1 1 593 1 594 0.0 832
Msa1136420 MtrunA17_Chr7g0223181 65.964 617 205 4 1 614 1 615 0.0 827
Msa1136420 MtrunA17_Chr7g0262821 65.640 617 207 4 1 614 1 615 0.0 820
Msa1136420 MtrunA17_Chr7g0223291 65.154 617 210 4 1 614 1 615 0.0 819
Msa1136420 MtrunA17_Chr4g0031301 65.154 617 210 4 1 614 1 615 0.0 815
Msa1136420 MtrunA17_Chr4g0031321 64.992 617 211 4 1 614 1 615 0.0 810
Msa1136420 MtrunA17_Chr4g0073741 64.506 617 213 5 1 614 1 614 0.0 810
Msa1136420 MtrunA17_Chr7g0223631 64.821 614 202 2 1 614 1 600 0.0 806
Msa1136420 MtrunA17_Chr7g0223701 62.921 623 222 3 1 614 1 623 0.0 804
Msa1136420 MtrunA17_Chr7g0248131 64.136 619 217 4 1 614 1 619 0.0 802
Msa1136420 MtrunA17_Chr7g0248151 64.992 617 213 2 1 614 1 617 0.0 800
Msa1136420 MtrunA17_Chr2g0296391 72.538 528 143 2 1 526 1 528 0.0 799
Msa1136420 MtrunA17_Chr2g0331381 69.274 537 104 3 10 546 7 482 0.0 748
Msa1136420 MtrunA17_Chr2g0293601 69.750 519 121 3 1 517 1 485 0.0 740
Msa1136420 MtrunA17_Chr1g0166551 61.765 612 121 4 6 615 2 502 0.0 729
Msa1136420 MtrunA17_Chr7g0223541 63.469 542 197 1 74 614 31 572 0.0 717
Msa1136420 MtrunA17_Chr7g0223681 65.076 524 183 0 91 614 2 525 0.0 700
Msa1136420 MtrunA17_Chr6g0462681 56.472 618 265 3 1 616 1 616 0.0 694
Msa1136420 MtrunA17_Chr6g0462601 56.656 616 263 3 1 614 1 614 0.0 688
Msa1136420 MtrunA17_Chr6g0462711 55.772 615 264 4 9 616 10 623 0.0 658
Msa1136420 MtrunA17_Chr2g0284681 53.984 615 258 7 6 611 5 603 0.0 647
Msa1136420 MtrunA17_Chr2g0293561 79.144 374 78 0 1 374 1 374 0.0 637
Msa1136420 MtrunA17_Chr8g0388761 54.839 589 255 8 7 590 36 618 0.0 626
Msa1136420 MtrunA17_Chr6g0462771 53.821 615 275 4 9 616 9 621 0.0 625
Msa1136420 MtrunA17_Chr6g0462641 52.564 624 285 5 1 616 1 621 0.0 624
Msa1136420 MtrunA17_Chr8g0388671 54.839 589 255 8 7 590 36 618 0.0 623
Msa1136420 MtrunA17_Chr6g0462611 53.860 544 249 2 74 616 22 564 0.0 585
Msa1136420 MtrunA17_Chr2g0299921 70.305 394 113 2 3 396 1023 1412 0.0 566
Msa1136420 MtrunA17_Chr2g0299921 68.274 394 120 3 3 395 1407 1796 3.30e-169 526
Msa1136420 MtrunA17_Chr2g0293271 63.844 437 88 3 21 457 43 409 0.0 548
Msa1136420 MtrunA17_Chr2g0299821 64.631 393 135 2 1 391 1 391 0.0 526
Msa1136420 MtrunA17_Chr2g0299821 51.613 93 36 3 453 536 390 482 3.35e-17 84.7
Msa1136420 MtrunA17_Chr2g0299851 67.179 390 124 2 1 390 1030 1415 1.32e-177 541
Msa1136420 MtrunA17_Chr2g0299791 66.838 389 125 2 1 389 1034 1418 6.18e-175 534
Msa1136420 MtrunA17_Chr6g0462861 46.411 627 295 12 6 616 6 607 2.70e-170 499
Msa1136420 MtrunA17_Chr1g0151991 78.007 291 64 0 1 291 1 291 7.64e-170 484
Msa1136420 MtrunA17_Chr2g0299881 64.796 392 130 3 2 389 1031 1418 9.20e-169 519
Msa1136420 MtrunA17_Chr2g0299881 60.606 66 22 1 185 250 1414 1475 4.45e-16 82.4
Msa1136420 MtrunA17_Chr7g0245521 80.586 273 53 0 1 273 1 273 2.35e-164 470
Msa1136420 MtrunA17_Chr2g0279901 45.050 606 302 14 1 594 43 629 7.08e-160 474
Msa1136420 MtrunA17_Chr4g0049501 43.914 608 307 15 1 594 40 627 1.33e-154 460
Msa1136420 MtrunA17_Chr7g0223761 61.497 374 101 3 244 615 6 338 3.11e-154 447
Msa1136420 MtrunA17_Chr7g0245531 69.775 311 93 1 305 614 2 312 2.65e-150 436
Msa1136420 MtrunA17_Chr1g0152001 71.284 296 83 2 315 609 1 295 5.31e-147 427
Msa1136420 MtrunA17_Chr2g0277021 45.893 560 281 11 8 560 70 614 1.48e-146 441
Msa1136420 MtrunA17_Chr1g0188611 61.953 297 104 3 322 616 1 290 1.15e-111 336
Msa1136420 MtrunA17_Chr1g0188601 79.581 191 39 0 92 282 1 191 6.74e-110 328
Msa1136420 MtrunA17_Chr7g0223671 73.545 189 50 0 74 262 8 196 3.14e-102 308
Msa1136420 MtrunA17_Chr6g0462631 51.582 316 104 5 100 411 22 292 2.51e-97 299
Msa1136420 MtrunA17_Chr6g0462751 47.578 351 124 4 67 414 12 305 4.35e-97 300
Msa1136420 MtrunA17_Chr7g0223771 78.431 153 33 0 93 245 1 153 6.14e-84 260
Msa1136420 MtrunA17_Chr7g0245541 61.809 199 75 1 417 614 1 199 6.84e-78 245
Msa1136420 MtrunA17_Chr5g0394391 34.930 501 302 12 9 493 29 521 1.14e-76 254
Msa1136420 MtrunA17_Chr4g0046881 77.305 141 29 1 135 275 14 151 3.07e-73 231
Msa1136420 MtrunA17_Chr2g0331901 34.491 403 257 5 10 410 4 401 1.41e-71 247
Msa1136420 MtrunA17_Chr4g0004331 34.491 403 257 5 10 410 4 401 3.51e-71 246
Msa1136420 MtrunA17_Chr6g0462791 63.068 176 64 1 108 283 1 175 1.07e-70 226
Msa1136420 MtrunA17_Chr7g0223861 79.389 131 27 0 78 208 4 134 2.72e-69 221
Msa1136420 MtrunA17_Chr5g0444001 32.634 429 277 6 10 431 4 427 1.41e-68 232
Msa1136420 MtrunA17_Chr3g0098761 32.619 420 277 5 10 428 4 418 1.96e-68 237
Msa1136420 MtrunA17_Chr3g0120101 30.472 466 296 8 12 454 29 489 8.74e-62 220
Msa1136420 MtrunA17_Chr4g0064621 32.819 518 304 16 9 495 140 644 2.74e-57 205
Msa1136420 MtrunA17_Chr6g0481391 74.590 122 28 1 38 159 13 131 5.02e-57 188
Msa1136420 MtrunA17_Chr6g0462701 51.462 171 59 1 100 270 22 168 1.23e-48 167
Msa1136420 MtrunA17_Chr5g0394221 37.627 295 163 8 300 586 70 351 2.75e-48 172
Msa1136420 MtrunA17_Chr4g0060241 29.191 507 317 16 10 495 21 506 5.80e-48 176
Msa1136420 MtrunA17_Chr4g0046871 75.000 100 25 0 336 435 6 105 1.89e-44 154
Msa1136420 MtrunA17_Chr6g0462691 54.930 142 63 1 322 462 1 142 2.25e-44 155
Msa1136420 MtrunA17_Chr7g0223791 60.769 130 43 2 441 570 58 179 2.32e-41 148
Msa1136420 MtrunA17_Chr7g0223791 71.250 80 15 3 56 135 18 89 6.44e-28 110
Msa1136420 MtrunA17_Chr5g0442171 32.523 329 200 9 170 486 1 319 1.27e-40 150
Msa1136420 MtrunA17_Chr6g0481381 75.758 99 23 1 514 611 75 173 2.09e-40 145
Msa1136420 MtrunA17_Chr6g0481381 83.784 74 12 0 176 249 1 74 1.01e-35 132
Msa1136420 MtrunA17_Chr5g0394231 36.283 226 93 4 74 298 5 180 6.09e-39 141
Msa1136420 MtrunA17_Chr1g0188591 82.192 73 13 0 1 73 1 73 5.34e-36 130
Msa1136420 MtrunA17_Chr7g0223871 59.055 127 51 1 490 615 7 133 8.19e-36 131
Msa1136420 MtrunA17_Chr7g0223691 78.082 73 16 0 1 73 1 73 4.92e-35 126
Msa1136420 MtrunA17_Chr7g0223881 78.481 79 16 1 284 362 5 82 2.39e-33 122
Msa1136420 MtrunA17_Chr6g0462621 69.863 73 20 1 1 73 1 71 1.10e-27 106
Msa1136420 MtrunA17_Chr7g0223661 43.103 116 23 1 315 430 1 73 1.15e-20 86.7
Msa1136420 MtrunA17_Chr2g0284661 55.422 83 36 1 368 449 61 143 3.94e-20 87.0
Msa1136420 MtrunA17_Chr7g0221651 47.619 84 44 0 215 298 1 84 4.47e-20 85.1
Msa1136420 MtrunA17_Chr6g0462801 60.606 66 21 1 322 382 1 66 2.39e-18 79.7
Msa1136420 MtrunA17_Chr2g0299891 74.419 43 11 0 315 357 1 43 6.74e-17 75.5
Msa1136420 MtrunA17_Chr5g0442161 32.026 153 97 4 9 157 28 177 4.58e-14 70.9
Msa1136420 MtrunA17_Chr4g0064651 40.217 92 53 2 397 486 29 120 1.55e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136420 AT3G12580.1 65.478 617 208 4 1 614 1 615 0.0 823
Msa1136420 AT5G02500.1 64.668 617 213 4 1 614 1 615 0.0 816
Msa1136420 AT5G02490.1 64.344 617 215 4 1 614 1 615 0.0 809
Msa1136420 AT3G09440.1 64.506 617 214 4 1 614 1 615 0.0 802
Msa1136420 AT3G09440.4 64.506 617 214 4 1 614 1 615 0.0 802
Msa1136420 AT3G09440.2 64.506 617 214 4 1 614 1 615 0.0 802
Msa1136420 AT3G09440.3 64.506 617 214 4 1 614 1 615 0.0 802
Msa1136420 AT1G56410.1 64.668 617 211 5 1 614 1 613 0.0 800
Msa1136420 AT1G16030.1 62.561 617 225 5 1 614 1 614 0.0 789
Msa1136420 AT5G28540.1 54.501 611 267 8 7 612 35 639 0.0 639
Msa1136420 AT5G42020.1 54.501 611 267 8 7 612 35 639 0.0 638
Msa1136420 AT5G42020.3 54.501 611 267 8 7 612 40 644 0.0 637
Msa1136420 AT1G09080.1 53.909 614 272 8 7 616 50 656 0.0 617
Msa1136420 AT1G09080.2 53.909 614 272 8 7 616 40 646 0.0 616
Msa1136420 AT5G02500.2 74.036 389 99 1 1 389 1 387 0.0 614
Msa1136420 AT5G42020.2 58.420 481 190 7 7 483 35 509 0.0 550
Msa1136420 AT5G09590.1 46.101 577 286 14 10 579 60 618 1.40e-152 456
Msa1136420 AT4G37910.1 45.000 580 290 13 10 580 55 614 4.49e-147 441
Msa1136420 AT4G37910.2 45.000 580 290 13 10 580 55 614 4.49e-147 441
Msa1136420 AT4G24280.1 45.179 560 285 11 8 560 79 623 1.20e-145 439
Msa1136420 AT5G49910.1 45.357 560 284 11 8 560 79 623 2.78e-145 438
Msa1136420 AT1G79930.2 34.739 403 256 5 10 410 4 401 2.20e-74 254
Msa1136420 AT1G79930.1 34.739 403 256 5 10 410 4 401 5.06e-74 253
Msa1136420 AT1G79920.1 34.739 403 256 5 10 410 4 401 1.07e-73 251
Msa1136420 AT1G79920.3 34.739 403 256 5 10 410 4 401 1.18e-73 251
Msa1136420 AT1G79920.2 34.739 403 256 5 10 410 4 401 1.18e-73 251
Msa1136420 AT1G79920.4 34.739 403 256 5 10 410 4 401 1.18e-73 251
Msa1136420 AT1G11660.4 34.406 404 257 5 10 410 4 402 1.03e-71 246
Msa1136420 AT1G11660.3 34.406 404 257 5 10 410 4 402 1.03e-71 246
Msa1136420 AT1G11660.1 34.406 404 257 5 10 410 4 402 1.03e-71 246
Msa1136420 AT2G32120.1 33.852 514 305 14 9 506 30 524 1.35e-69 236
Msa1136420 AT2G32120.2 33.852 514 305 14 9 506 30 524 1.35e-69 236
Msa1136420 AT1G11660.2 34.877 367 233 4 47 410 2 365 8.61e-66 229
Msa1136420 AT4G16660.2 29.299 471 304 7 6 453 47 511 1.39e-58 211
Msa1136420 AT4G16660.1 29.299 471 304 7 6 453 23 487 1.52e-58 211

Find 108 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCATTCAAGGTCATTTC+TGG 0.133232 7_4:-4893902 Msa1136420:CDS
TGCAATAGTTGTTGTACTTT+TGG 0.196868 7_4:+4893131 None:intergenic
TTAGATGCAAAGAGGTTAAT+TGG 0.272649 7_4:-4893968 Msa1136420:intron
TGATTATCCGCATAATATTA+AGG 0.281715 7_4:+4893669 None:intergenic
TGCTTTACTATCAATGAAAA+TGG 0.291437 7_4:-4892741 Msa1136420:CDS
CGAAGTTAATGATGATATAA+TGG 0.293776 7_4:-4892955 Msa1136420:CDS
CCAGATGAGGCTGTTGCTTA+TGG 0.314371 7_4:-4893068 Msa1136420:CDS
CCATAAGCAACAGCCTCATC+TGG 0.337884 7_4:+4893068 None:intergenic
ACATCTTGCATCACCAAGTT+TGG 0.348190 7_4:+4892999 None:intergenic
GATGTTGCTCCTTTGTCTCT+TGG 0.351484 7_4:-4892981 Msa1136420:CDS
TGCTGAAGAAATCTCATCTA+TGG 0.352104 7_4:-4893822 Msa1136420:CDS
CGATAAGGTCTTTCAAGTTA+AGG 0.355272 7_4:-4893522 Msa1136420:CDS
GAATGACAAACCCTTGATTT+CGG 0.363835 7_4:-4893876 Msa1136420:CDS
ATAGATGCTGGTGCTATTGC+TGG 0.363983 7_4:-4893692 Msa1136420:CDS
CATTGATGAGGACCGAAGTT+TGG 0.365408 7_4:+4892862 None:intergenic
TTCATCTTTGACTTGGGTGG+TGG 0.368513 7_4:-4893575 Msa1136420:CDS
GAACATCTATTTCACTCTGT+TGG 0.372500 7_4:+4892418 None:intergenic
GCATACACTCAAGCTCCTTC+AGG 0.372973 7_4:+4892385 None:intergenic
GGGGAGAGGACATTGATAAT+AGG 0.379857 7_4:-4893475 Msa1136420:CDS
GAGGTAGATTCTTTATTTCA+AGG 0.387226 7_4:-4893314 Msa1136420:CDS
CATATTTATTTCCTCAAACT+TGG 0.388911 7_4:+4893262 None:intergenic
ATAGTAAAGCATACCTCTAA+AGG 0.391561 7_4:+4892753 None:intergenic
AGACCTTATCGTTAATTGTA+AGG 0.410835 7_4:+4893534 None:intergenic
TTGTCTTGCTGATGCCAAAA+TGG 0.411935 7_4:-4893204 Msa1136420:CDS
CGCCGTTCTCAACCTCCTTA+AGG 0.413742 7_4:+4893385 None:intergenic
AACATCTATTTCACTCTGTT+GGG 0.414811 7_4:+4892419 None:intergenic
CTGCCGGAAACACTCATCTT+GGG 0.417956 7_4:-4893496 Msa1136420:CDS
AAAAGTACAACAACTATTGC+AGG 0.418027 7_4:-4893129 Msa1136420:CDS
CAAGTTTGAGGAAATAAATA+TGG 0.420382 7_4:-4893261 Msa1136420:CDS
CGTGCAGTGGGAATCGATCT+TGG 0.426595 7_4:-4894330 Msa1136420:CDS
TCCTCGTGGTCACCCTTTAG+AGG 0.432662 7_4:-4892766 Msa1136420:CDS
CTTGTACTTAACCGAAATCA+AGG 0.441866 7_4:+4893865 None:intergenic
CAGATTTGTTTATAATGAGT+TGG 0.444830 7_4:+4892361 None:intergenic
GAAGTTAATGATGATATAAT+GGG 0.446738 7_4:-4892954 Msa1136420:CDS
GGTCCTCATCAATGTTTATG+AGG 0.452138 7_4:-4892853 Msa1136420:CDS
TATGATGCTCTGGCCATTCA+AGG 0.452525 7_4:-4893912 Msa1136420:CDS
TTTCACTGATGATCAAAGAT+TGG 0.454039 7_4:-4894208 Msa1136420:CDS
CTTGATTTCGGTTAAGTACA+AGG 0.455898 7_4:-4893864 Msa1136420:CDS
ACTGCCGGAAACACTCATCT+TGG 0.457028 7_4:-4893497 Msa1136420:CDS
TCATCTTTGACTTGGGTGGT+GGG 0.462409 7_4:-4893574 Msa1136420:CDS
CAAGCTGCTTTGTTGAGTGA+AGG 0.468563 7_4:-4893035 Msa1136420:CDS
GTGAGAACGCAAGAGCCTTA+AGG 0.472864 7_4:-4893400 Msa1136420:CDS
CCTCCTTACAATTAACGATA+AGG 0.474695 7_4:-4893537 Msa1136420:CDS
AATCACTCGTGCCAAGTTTG+AGG 0.476109 7_4:-4893273 Msa1136420:CDS
ATGCAAAGAGGTTAATTGGT+AGG 0.490498 7_4:-4893964 Msa1136420:CDS
ATTCCTATCAAGAAAACAAA+AGG 0.491929 7_4:-4892906 Msa1136420:CDS
CGCTGTCATCACCACCATTG+AGG 0.494719 7_4:-4893333 Msa1136420:CDS
ACTCCAGAAATGACCTTGAA+TGG 0.496023 7_4:+4893899 None:intergenic
TAGTAAAGCATACCTCTAAA+GGG 0.502926 7_4:+4892754 None:intergenic
TTCGGTTAAGTACAAGGGAC+AGG 0.503303 7_4:-4893858 Msa1136420:CDS
ATCTAATGCATTCATTACAT+TGG 0.506285 7_4:+4892563 None:intergenic
TTCAAAACGATATGATGCTC+TGG 0.506462 7_4:-4893922 Msa1136420:CDS
AAATAAAGAATCTACCTCAA+TGG 0.513375 7_4:+4893319 None:intergenic
ATACATGATGTCGTCCTTGT+CGG 0.521036 7_4:-4893170 Msa1136420:CDS
GTAACAACTGCATTCTTGAC+AGG 0.522397 7_4:+4893755 None:intergenic
ATTAGATTATTGTGTTTACA+AGG 0.523212 7_4:-4892547 Msa1136420:CDS
ATCATTGAAATAAGCAGGTA+CGG 0.536914 7_4:+4893733 None:intergenic
ATGAGATTTCTTCAGCACAT+AGG 0.544260 7_4:+4893828 None:intergenic
CGGAAAGCCACAATAGATGC+TGG 0.544288 7_4:-4893704 Msa1136420:CDS
GAGGGTGAGAGAGCAAGAGC+TGG 0.548107 7_4:-4892834 Msa1136420:CDS
ACTGATGATCAAAGATTGGT+TGG 0.548819 7_4:-4894204 Msa1136420:CDS
ACTGCTGCAGCTATTGCGTA+TGG 0.555701 7_4:-4893638 Msa1136420:CDS
TGAGCATCATTGAAATAAGC+AGG 0.555903 7_4:+4893728 None:intergenic
CTTATCGTTAATTGTAAGGA+GGG 0.556954 7_4:+4893538 None:intergenic
GCTGGTGACAACAATCTGCT+TGG 0.565424 7_4:-4892816 Msa1136420:CDS
TTTCAAGTTAAGGCTACTGC+CGG 0.565897 7_4:-4893512 Msa1136420:CDS
TGCAGCTATTGCGTATGGAC+TGG 0.573148 7_4:-4893633 Msa1136420:CDS
GGGTGACCACGAGGAGCACG+TGG 0.575978 7_4:+4892774 None:intergenic
TGCCGGAAACACTCATCTTG+GGG 0.576405 7_4:-4893495 Msa1136420:CDS
CATAAGCAACAGCCTCATCT+GGG 0.576751 7_4:+4893069 None:intergenic
GTCCTCATCAATGTTTATGA+GGG 0.581089 7_4:-4892852 Msa1136420:CDS
TTGTACTTAACCGAAATCAA+GGG 0.581463 7_4:+4893866 None:intergenic
AAGTATGAAGGACGTGCAGT+GGG 0.586872 7_4:-4894342 Msa1136420:CDS
AAAGTATGAAGGACGTGCAG+TGG 0.587167 7_4:-4894343 Msa1136420:CDS
AGAGGACATTGATAATAGGA+TGG 0.589461 7_4:-4893471 Msa1136420:CDS
TCAGTGAAAGCAACACAAGA+AGG 0.593151 7_4:+4894222 None:intergenic
CCTTATCGTTAATTGTAAGG+AGG 0.593274 7_4:+4893537 None:intergenic
AGCCTTAAGGAGGTTGAGAA+CGG 0.603861 7_4:-4893387 Msa1136420:CDS
AATCTCATTCGTATTACCAG+TGG 0.603979 7_4:+4892689 None:intergenic
TTGCTGGCCTTAATATTATG+CGG 0.610596 7_4:-4893676 Msa1136420:CDS
AATAGCACCAGCATCTATTG+TGG 0.610874 7_4:+4893697 None:intergenic
TGTTCTTGAAAATCACCTGA+AGG 0.620051 7_4:-4892400 Msa1136420:CDS
CATGATGTCGTCCTTGTCGG+TGG 0.620265 7_4:-4893167 Msa1136420:CDS
TTGATTTCGGTTAAGTACAA+GGG 0.625025 7_4:-4893863 Msa1136420:CDS
GGTACTATCAAGTAAACTTG+TGG 0.625691 7_4:+4892440 None:intergenic
GAGATTATTCACAATGACCA+AGG 0.627593 7_4:-4894258 Msa1136420:CDS
TAAAGAATCTACCTCAATGG+TGG 0.633251 7_4:+4893322 None:intergenic
GAAAGCAACACAAGAAGGTG+TGG 0.633341 7_4:+4894227 None:intergenic
TCTGTCCCACGTGCTCCTCG+TGG 0.633549 7_4:-4892780 Msa1136420:CDS
TTCTAGAAGAGCCACCGACA+AGG 0.635048 7_4:+4893156 None:intergenic
TAAGAGCATCAACCCAGATG+AGG 0.638791 7_4:-4893081 Msa1136420:CDS
GATGGTGAACTACTTTGCAA+AGG 0.639669 7_4:-4893453 Msa1136420:CDS
AGCTGAAAATTACCGTGTTG+AGG 0.641959 7_4:-4892607 Msa1136420:CDS
GTCTAGTGATAACCAAACTT+CGG 0.642260 7_4:-4892874 Msa1136420:CDS
GATCAATTCTGCAATCACAA+AGG 0.649185 7_4:-4892463 Msa1136420:CDS
AGAACGCAAGAGCCTTAAGG+AGG 0.653331 7_4:-4893397 Msa1136420:CDS
GGACAAGAGAACTAATTGTG+TGG 0.654792 7_4:-4893612 Msa1136420:CDS
ACTTCGATACCAAGAGACAA+AGG 0.657738 7_4:+4892972 None:intergenic
TACGCAATAGCTGCAGCAGT+AGG 0.659113 7_4:+4893641 None:intergenic
CACCCTCATAAACATTGATG+AGG 0.662378 7_4:+4892850 None:intergenic
CAAGAGAACTAATTGTGTGG+AGG 0.667224 7_4:-4893609 Msa1136420:CDS
ACCTCTAAAGGGTGACCACG+AGG 0.674303 7_4:+4892765 None:intergenic
CGTATTCGTGCGTTGCTGTG+TGG 0.676152 7_4:-4894302 Msa1136420:CDS
GCCGGAAACACTCATCTTGG+GGG 0.680495 7_4:-4893494 Msa1136420:CDS
AAAGATGCGTGAGACTGCAG+AGG 0.681002 7_4:-4893792 Msa1136420:CDS
GGAGTTTAAGAAGAAGAACA+AGG 0.688545 7_4:-4893432 Msa1136420:CDS
CTTATTTCAATGATGCTCAG+CGG 0.693840 7_4:-4893724 Msa1136420:CDS
GGTGACCACGAGGAGCACGT+GGG 0.763247 7_4:+4892775 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAATTAAATTCTGATCA+GGG + chr7_4:4892704-4892723 None:intergenic 20.0%
!! TAGTAAATTAAATTCTGATC+AGG + chr7_4:4892705-4892724 None:intergenic 20.0%
!!! TAATATTTTCATCTTTGACT+TGG - chr7_4:4893125-4893144 Msa1136420:CDS 20.0%
!!! AATATTTTCATCTTTGACTT+GGG - chr7_4:4893126-4893145 Msa1136420:CDS 20.0%
!! GAAGTTAATGATGATATAAT+GGG - chr7_4:4893753-4893772 Msa1136420:CDS 20.0%
!!! GATCATTTTTGTAATTTCTT+GGG + chr7_4:4894075-4894094 None:intergenic 20.0%
!!! TGATCATTTTTGTAATTTCT+TGG + chr7_4:4894076-4894095 None:intergenic 20.0%
!! ATTAGATTATTGTGTTTACA+AGG - chr7_4:4894160-4894179 Msa1136420:CDS 20.0%
!! AGTAAATTAAATTCTGATCA+GGG + chr7_4:4892704-4892723 None:intergenic 20.0%
!! TAGTAAATTAAATTCTGATC+AGG + chr7_4:4892705-4892724 None:intergenic 20.0%
!!! TAATATTTTCATCTTTGACT+TGG - chr7_4:4893125-4893144 Msa1136420:CDS 20.0%
!!! AATATTTTCATCTTTGACTT+GGG - chr7_4:4893126-4893145 Msa1136420:CDS 20.0%
!! GAAGTTAATGATGATATAAT+GGG - chr7_4:4893753-4893772 Msa1136420:CDS 20.0%
!!! GATCATTTTTGTAATTTCTT+GGG + chr7_4:4894075-4894094 None:intergenic 20.0%
!!! TGATCATTTTTGTAATTTCT+TGG + chr7_4:4894076-4894095 None:intergenic 20.0%
!! ATTAGATTATTGTGTTTACA+AGG - chr7_4:4894160-4894179 Msa1136420:CDS 20.0%
!!! TTATTTTGTTAGATGCAAAG+AGG - chr7_4:4892731-4892750 Msa1136420:CDS 25.0%
! TGATTATCCGCATAATATTA+AGG + chr7_4:4893041-4893060 None:intergenic 25.0%
! AAATAAAGAATCTACCTCAA+TGG + chr7_4:4893391-4893410 None:intergenic 25.0%
! CATATTTATTTCCTCAAACT+TGG + chr7_4:4893448-4893467 None:intergenic 25.0%
! CAAGTTTGAGGAAATAAATA+TGG - chr7_4:4893446-4893465 Msa1136420:CDS 25.0%
!! CTTTAAAAATGTACCAAACT+TGG - chr7_4:4893695-4893714 Msa1136420:CDS 25.0%
! CGAAGTTAATGATGATATAA+TGG - chr7_4:4893752-4893771 Msa1136420:CDS 25.0%
! ATTCCTATCAAGAAAACAAA+AGG - chr7_4:4893801-4893820 Msa1136420:CDS 25.0%
!!! TAACCTTTTGTTTTCTTGAT+AGG + chr7_4:4893807-4893826 None:intergenic 25.0%
! TGCTTTACTATCAATGAAAA+TGG - chr7_4:4893966-4893985 Msa1136420:CDS 25.0%
! TTGAGGATGAAAAATTTCTA+AGG - chr7_4:4894117-4894136 Msa1136420:intron 25.0%
! ATCTAATGCATTCATTACAT+TGG + chr7_4:4894147-4894166 None:intergenic 25.0%
!! CAGATTTGTTTATAATGAGT+TGG + chr7_4:4894349-4894368 None:intergenic 25.0%
!!! TTATTTTGTTAGATGCAAAG+AGG - chr7_4:4892731-4892750 Msa1136420:CDS 25.0%
! TGATTATCCGCATAATATTA+AGG + chr7_4:4893041-4893060 None:intergenic 25.0%
! AAATAAAGAATCTACCTCAA+TGG + chr7_4:4893391-4893410 None:intergenic 25.0%
! CATATTTATTTCCTCAAACT+TGG + chr7_4:4893448-4893467 None:intergenic 25.0%
! CAAGTTTGAGGAAATAAATA+TGG - chr7_4:4893446-4893465 Msa1136420:CDS 25.0%
!! CTTTAAAAATGTACCAAACT+TGG - chr7_4:4893695-4893714 Msa1136420:CDS 25.0%
! CGAAGTTAATGATGATATAA+TGG - chr7_4:4893752-4893771 Msa1136420:CDS 25.0%
! ATTCCTATCAAGAAAACAAA+AGG - chr7_4:4893801-4893820 Msa1136420:CDS 25.0%
!!! TAACCTTTTGTTTTCTTGAT+AGG + chr7_4:4893807-4893826 None:intergenic 25.0%
! TGCTTTACTATCAATGAAAA+TGG - chr7_4:4893966-4893985 Msa1136420:CDS 25.0%
! TTGAGGATGAAAAATTTCTA+AGG - chr7_4:4894117-4894136 Msa1136420:intron 25.0%
! ATCTAATGCATTCATTACAT+TGG + chr7_4:4894147-4894166 None:intergenic 25.0%
!! CAGATTTGTTTATAATGAGT+TGG + chr7_4:4894349-4894368 None:intergenic 25.0%
TTTCACTGATGATCAAAGAT+TGG - chr7_4:4892499-4892518 Msa1136420:CDS 30.0%
! TACCAAAAACAGTGTTTTCA+GGG + chr7_4:4892559-4892578 None:intergenic 30.0%
! TTACCAAAAACAGTGTTTTC+AGG + chr7_4:4892560-4892579 None:intergenic 30.0%
TTAGATGCAAAGAGGTTAAT+TGG - chr7_4:4892739-4892758 Msa1136420:CDS 30.0%
TTGTACTTAACCGAAATCAA+GGG + chr7_4:4892844-4892863 None:intergenic 30.0%
TTGATTTCGGTTAAGTACAA+GGG - chr7_4:4892844-4892863 Msa1136420:CDS 30.0%
ATCATTGAAATAAGCAGGTA+CGG + chr7_4:4892977-4892996 None:intergenic 30.0%
CTTATCGTTAATTGTAAGGA+GGG + chr7_4:4893172-4893191 None:intergenic 30.0%
AGACCTTATCGTTAATTGTA+AGG + chr7_4:4893176-4893195 None:intergenic 30.0%
! GAGGTAGATTCTTTATTTCA+AGG - chr7_4:4893393-4893412 Msa1136420:CDS 30.0%
! TATAGCACTTTTGTCCATTT+TGG + chr7_4:4893520-4893539 None:intergenic 30.0%
! TGCAATAGTTGTTGTACTTT+TGG + chr7_4:4893579-4893598 None:intergenic 30.0%
! AAAAGTACAACAACTATTGC+AGG - chr7_4:4893578-4893597 Msa1136420:CDS 30.0%
TAGTAAAGCATACCTCTAAA+GGG + chr7_4:4893956-4893975 None:intergenic 30.0%
ATAGTAAAGCATACCTCTAA+AGG + chr7_4:4893957-4893976 None:intergenic 30.0%
! GAAATTTTTCATCCTCAACA+CGG + chr7_4:4894115-4894134 None:intergenic 30.0%
! GGATGAAAAATTTCTAAGGA+AGG - chr7_4:4894121-4894140 Msa1136420:intron 30.0%
AACATCTATTTCACTCTGTT+GGG + chr7_4:4894291-4894310 None:intergenic 30.0%
TTTCACTGATGATCAAAGAT+TGG - chr7_4:4892499-4892518 Msa1136420:CDS 30.0%
! TACCAAAAACAGTGTTTTCA+GGG + chr7_4:4892559-4892578 None:intergenic 30.0%
! TTACCAAAAACAGTGTTTTC+AGG + chr7_4:4892560-4892579 None:intergenic 30.0%
TTAGATGCAAAGAGGTTAAT+TGG - chr7_4:4892739-4892758 Msa1136420:CDS 30.0%
TTGTACTTAACCGAAATCAA+GGG + chr7_4:4892844-4892863 None:intergenic 30.0%
TTGATTTCGGTTAAGTACAA+GGG - chr7_4:4892844-4892863 Msa1136420:CDS 30.0%
ATCATTGAAATAAGCAGGTA+CGG + chr7_4:4892977-4892996 None:intergenic 30.0%
CTTATCGTTAATTGTAAGGA+GGG + chr7_4:4893172-4893191 None:intergenic 30.0%
AGACCTTATCGTTAATTGTA+AGG + chr7_4:4893176-4893195 None:intergenic 30.0%
! GAGGTAGATTCTTTATTTCA+AGG - chr7_4:4893393-4893412 Msa1136420:CDS 30.0%
! TATAGCACTTTTGTCCATTT+TGG + chr7_4:4893520-4893539 None:intergenic 30.0%
! TGCAATAGTTGTTGTACTTT+TGG + chr7_4:4893579-4893598 None:intergenic 30.0%
! AAAAGTACAACAACTATTGC+AGG - chr7_4:4893578-4893597 Msa1136420:CDS 30.0%
TAGTAAAGCATACCTCTAAA+GGG + chr7_4:4893956-4893975 None:intergenic 30.0%
ATAGTAAAGCATACCTCTAA+AGG + chr7_4:4893957-4893976 None:intergenic 30.0%
! GAAATTTTTCATCCTCAACA+CGG + chr7_4:4894115-4894134 None:intergenic 30.0%
! GGATGAAAAATTTCTAAGGA+AGG - chr7_4:4894121-4894140 Msa1136420:intron 30.0%
AACATCTATTTCACTCTGTT+GGG + chr7_4:4894291-4894310 None:intergenic 30.0%
GAGATTATTCACAATGACCA+AGG - chr7_4:4892449-4892468 Msa1136420:CDS 35.0%
ACTGATGATCAAAGATTGGT+TGG - chr7_4:4892503-4892522 Msa1136420:CDS 35.0%
! AACCCTGAAAACACTGTTTT+TGG - chr7_4:4892554-4892573 Msa1136420:CDS 35.0%
! ATACGATGTGTTGATACTGT+TGG - chr7_4:4892660-4892679 Msa1136420:CDS 35.0%
ATGCAAAGAGGTTAATTGGT+AGG - chr7_4:4892743-4892762 Msa1136420:CDS 35.0%
TTCAAAACGATATGATGCTC+TGG - chr7_4:4892785-4892804 Msa1136420:CDS 35.0%
GAATGACAAACCCTTGATTT+CGG - chr7_4:4892831-4892850 Msa1136420:CDS 35.0%
CTTGTACTTAACCGAAATCA+AGG + chr7_4:4892845-4892864 None:intergenic 35.0%
CTTGATTTCGGTTAAGTACA+AGG - chr7_4:4892843-4892862 Msa1136420:CDS 35.0%
ATGAGATTTCTTCAGCACAT+AGG + chr7_4:4892882-4892901 None:intergenic 35.0%
TGCTGAAGAAATCTCATCTA+TGG - chr7_4:4892885-4892904 Msa1136420:CDS 35.0%
TGAGCATCATTGAAATAAGC+AGG + chr7_4:4892982-4893001 None:intergenic 35.0%
CTTATTTCAATGATGCTCAG+CGG - chr7_4:4892983-4893002 Msa1136420:CDS 35.0%
!! TTGCTGGCCTTAATATTATG+CGG - chr7_4:4893031-4893050 Msa1136420:CDS 35.0%
!!! ATTTTCATCTTTGACTTGGG+TGG - chr7_4:4893129-4893148 Msa1136420:CDS 35.0%
CCTTATCGTTAATTGTAAGG+AGG + chr7_4:4893173-4893192 None:intergenic 35.0%
CCTCCTTACAATTAACGATA+AGG - chr7_4:4893170-4893189 Msa1136420:CDS 35.0%
!! CGATAAGGTCTTTCAAGTTA+AGG - chr7_4:4893185-4893204 Msa1136420:CDS 35.0%
! AGAGGACATTGATAATAGGA+TGG - chr7_4:4893236-4893255 Msa1136420:CDS 35.0%
GGAGTTTAAGAAGAAGAACA+AGG - chr7_4:4893275-4893294 Msa1136420:CDS 35.0%
TAAAGAATCTACCTCAATGG+TGG + chr7_4:4893388-4893407 None:intergenic 35.0%
! TATTGCAGGAATTTTTCGCA+GGG - chr7_4:4893592-4893611 Msa1136420:CDS 35.0%
GTCTAGTGATAACCAAACTT+CGG - chr7_4:4893833-4893852 Msa1136420:CDS 35.0%
GTCCTCATCAATGTTTATGA+GGG - chr7_4:4893855-4893874 Msa1136420:CDS 35.0%
TCTGCAAATGAAAAATCCAC+TGG - chr7_4:4894002-4894021 Msa1136420:intron 35.0%
AATCTCATTCGTATTACCAG+TGG + chr7_4:4894021-4894040 None:intergenic 35.0%
GATCAATTCTGCAATCACAA+AGG - chr7_4:4894244-4894263 Msa1136420:CDS 35.0%
GGTACTATCAAGTAAACTTG+TGG + chr7_4:4894270-4894289 None:intergenic 35.0%
GAACATCTATTTCACTCTGT+TGG + chr7_4:4894292-4894311 None:intergenic 35.0%
TGTTCTTGAAAATCACCTGA+AGG - chr7_4:4894307-4894326 Msa1136420:CDS 35.0%
GAGATTATTCACAATGACCA+AGG - chr7_4:4892449-4892468 Msa1136420:CDS 35.0%
ACTGATGATCAAAGATTGGT+TGG - chr7_4:4892503-4892522 Msa1136420:CDS 35.0%
! AACCCTGAAAACACTGTTTT+TGG - chr7_4:4892554-4892573 Msa1136420:CDS 35.0%
! ATACGATGTGTTGATACTGT+TGG - chr7_4:4892660-4892679 Msa1136420:CDS 35.0%
ATGCAAAGAGGTTAATTGGT+AGG - chr7_4:4892743-4892762 Msa1136420:CDS 35.0%
TTCAAAACGATATGATGCTC+TGG - chr7_4:4892785-4892804 Msa1136420:CDS 35.0%
GAATGACAAACCCTTGATTT+CGG - chr7_4:4892831-4892850 Msa1136420:CDS 35.0%
CTTGTACTTAACCGAAATCA+AGG + chr7_4:4892845-4892864 None:intergenic 35.0%
CTTGATTTCGGTTAAGTACA+AGG - chr7_4:4892843-4892862 Msa1136420:CDS 35.0%
ATGAGATTTCTTCAGCACAT+AGG + chr7_4:4892882-4892901 None:intergenic 35.0%
TGCTGAAGAAATCTCATCTA+TGG - chr7_4:4892885-4892904 Msa1136420:CDS 35.0%
TGAGCATCATTGAAATAAGC+AGG + chr7_4:4892982-4893001 None:intergenic 35.0%
CTTATTTCAATGATGCTCAG+CGG - chr7_4:4892983-4893002 Msa1136420:CDS 35.0%
!! TTGCTGGCCTTAATATTATG+CGG - chr7_4:4893031-4893050 Msa1136420:CDS 35.0%
!!! ATTTTCATCTTTGACTTGGG+TGG - chr7_4:4893129-4893148 Msa1136420:CDS 35.0%
CCTTATCGTTAATTGTAAGG+AGG + chr7_4:4893173-4893192 None:intergenic 35.0%
CCTCCTTACAATTAACGATA+AGG - chr7_4:4893170-4893189 Msa1136420:CDS 35.0%
!! CGATAAGGTCTTTCAAGTTA+AGG - chr7_4:4893185-4893204 Msa1136420:CDS 35.0%
! AGAGGACATTGATAATAGGA+TGG - chr7_4:4893236-4893255 Msa1136420:CDS 35.0%
GGAGTTTAAGAAGAAGAACA+AGG - chr7_4:4893275-4893294 Msa1136420:CDS 35.0%
TAAAGAATCTACCTCAATGG+TGG + chr7_4:4893388-4893407 None:intergenic 35.0%
! TATTGCAGGAATTTTTCGCA+GGG - chr7_4:4893592-4893611 Msa1136420:CDS 35.0%
GTCTAGTGATAACCAAACTT+CGG - chr7_4:4893833-4893852 Msa1136420:CDS 35.0%
GTCCTCATCAATGTTTATGA+GGG - chr7_4:4893855-4893874 Msa1136420:CDS 35.0%
TCTGCAAATGAAAAATCCAC+TGG - chr7_4:4894002-4894021 Msa1136420:intron 35.0%
AATCTCATTCGTATTACCAG+TGG + chr7_4:4894021-4894040 None:intergenic 35.0%
GATCAATTCTGCAATCACAA+AGG - chr7_4:4894244-4894263 Msa1136420:CDS 35.0%
GGTACTATCAAGTAAACTTG+TGG + chr7_4:4894270-4894289 None:intergenic 35.0%
GAACATCTATTTCACTCTGT+TGG + chr7_4:4894292-4894311 None:intergenic 35.0%
TGTTCTTGAAAATCACCTGA+AGG - chr7_4:4894307-4894326 Msa1136420:CDS 35.0%
TCAGTGAAAGCAACACAAGA+AGG + chr7_4:4892488-4892507 None:intergenic 40.0%
!! AACAGTGTTTTCAGGGTTTG+TGG + chr7_4:4892552-4892571 None:intergenic 40.0%
ACTCCAGAAATGACCTTGAA+TGG + chr7_4:4892811-4892830 None:intergenic 40.0%
GTAACAACTGCATTCTTGAC+AGG + chr7_4:4892955-4892974 None:intergenic 40.0%
AATAGCACCAGCATCTATTG+TGG + chr7_4:4893013-4893032 None:intergenic 40.0%
GGACAAGAGAACTAATTGTG+TGG - chr7_4:4893095-4893114 Msa1136420:CDS 40.0%
CAAGAGAACTAATTGTGTGG+AGG - chr7_4:4893098-4893117 Msa1136420:CDS 40.0%
!! TTTCAAGTTAAGGCTACTGC+CGG - chr7_4:4893195-4893214 Msa1136420:CDS 40.0%
GATGGTGAACTACTTTGCAA+AGG - chr7_4:4893254-4893273 Msa1136420:CDS 40.0%
! GGATCTTTTCAACGAGTGTT+TGG - chr7_4:4893467-4893486 Msa1136420:CDS 40.0%
TTGTCTTGCTGATGCCAAAA+TGG - chr7_4:4893503-4893522 Msa1136420:CDS 40.0%
ATACATGATGTCGTCCTTGT+CGG - chr7_4:4893537-4893556 Msa1136420:CDS 40.0%
! CTATTGCAGGAATTTTTCGC+AGG - chr7_4:4893591-4893610 Msa1136420:CDS 40.0%
ACATCTTGCATCACCAAGTT+TGG + chr7_4:4893711-4893730 None:intergenic 40.0%
ACTTCGATACCAAGAGACAA+AGG + chr7_4:4893738-4893757 None:intergenic 40.0%
GGTCCTCATCAATGTTTATG+AGG - chr7_4:4893854-4893873 Msa1136420:CDS 40.0%
CACCCTCATAAACATTGATG+AGG + chr7_4:4893860-4893879 None:intergenic 40.0%
AGCTGAAAATTACCGTGTTG+AGG - chr7_4:4894100-4894119 Msa1136420:intron 40.0%
TCAGTGAAAGCAACACAAGA+AGG + chr7_4:4892488-4892507 None:intergenic 40.0%
!! AACAGTGTTTTCAGGGTTTG+TGG + chr7_4:4892552-4892571 None:intergenic 40.0%
ACTCCAGAAATGACCTTGAA+TGG + chr7_4:4892811-4892830 None:intergenic 40.0%
GTAACAACTGCATTCTTGAC+AGG + chr7_4:4892955-4892974 None:intergenic 40.0%
AATAGCACCAGCATCTATTG+TGG + chr7_4:4893013-4893032 None:intergenic 40.0%
GGACAAGAGAACTAATTGTG+TGG - chr7_4:4893095-4893114 Msa1136420:CDS 40.0%
CAAGAGAACTAATTGTGTGG+AGG - chr7_4:4893098-4893117 Msa1136420:CDS 40.0%
!! TTTCAAGTTAAGGCTACTGC+CGG - chr7_4:4893195-4893214 Msa1136420:CDS 40.0%
GATGGTGAACTACTTTGCAA+AGG - chr7_4:4893254-4893273 Msa1136420:CDS 40.0%
! GGATCTTTTCAACGAGTGTT+TGG - chr7_4:4893467-4893486 Msa1136420:CDS 40.0%
TTGTCTTGCTGATGCCAAAA+TGG - chr7_4:4893503-4893522 Msa1136420:CDS 40.0%
ATACATGATGTCGTCCTTGT+CGG - chr7_4:4893537-4893556 Msa1136420:CDS 40.0%
! CTATTGCAGGAATTTTTCGC+AGG - chr7_4:4893591-4893610 Msa1136420:CDS 40.0%
ACATCTTGCATCACCAAGTT+TGG + chr7_4:4893711-4893730 None:intergenic 40.0%
ACTTCGATACCAAGAGACAA+AGG + chr7_4:4893738-4893757 None:intergenic 40.0%
GGTCCTCATCAATGTTTATG+AGG - chr7_4:4893854-4893873 Msa1136420:CDS 40.0%
CACCCTCATAAACATTGATG+AGG + chr7_4:4893860-4893879 None:intergenic 40.0%
AGCTGAAAATTACCGTGTTG+AGG - chr7_4:4894100-4894119 Msa1136420:intron 40.0%
AAAGTATGAAGGACGTGCAG+TGG - chr7_4:4892364-4892383 Msa1136420:CDS 45.0%
AAGTATGAAGGACGTGCAGT+GGG - chr7_4:4892365-4892384 Msa1136420:CDS 45.0%
!!! AAGGTGTGGTTTTGTTGCCT+TGG + chr7_4:4892469-4892488 None:intergenic 45.0%
GAAAGCAACACAAGAAGGTG+TGG + chr7_4:4892483-4892502 None:intergenic 45.0%
TATGATGCTCTGGCCATTCA+AGG - chr7_4:4892795-4892814 Msa1136420:CDS 45.0%
TGGCCATTCAAGGTCATTTC+TGG - chr7_4:4892805-4892824 Msa1136420:CDS 45.0%
TTCGGTTAAGTACAAGGGAC+AGG - chr7_4:4892849-4892868 Msa1136420:CDS 45.0%
!!! TGAGACTGCAGAGGCATTTT+TGG - chr7_4:4892924-4892943 Msa1136420:CDS 45.0%
!! ATAGATGCTGGTGCTATTGC+TGG - chr7_4:4893015-4893034 Msa1136420:CDS 45.0%
!! TTCATCTTTGACTTGGGTGG+TGG - chr7_4:4893132-4893151 Msa1136420:CDS 45.0%
!! TCATCTTTGACTTGGGTGGT+GGG - chr7_4:4893133-4893152 Msa1136420:CDS 45.0%
! GGGGAGAGGACATTGATAAT+AGG - chr7_4:4893232-4893251 Msa1136420:CDS 45.0%
AGCCTTAAGGAGGTTGAGAA+CGG - chr7_4:4893320-4893339 Msa1136420:CDS 45.0%
AATCACTCGTGCCAAGTTTG+AGG - chr7_4:4893434-4893453 Msa1136420:CDS 45.0%
!! TAAGAGCATCAACCCAGATG+AGG - chr7_4:4893626-4893645 Msa1136420:CDS 45.0%
CATAAGCAACAGCCTCATCT+GGG + chr7_4:4893641-4893660 None:intergenic 45.0%
! CAAGCTGCTTTGTTGAGTGA+AGG - chr7_4:4893672-4893691 Msa1136420:CDS 45.0%
GATGTTGCTCCTTTGTCTCT+TGG - chr7_4:4893726-4893745 Msa1136420:CDS 45.0%
CATTGATGAGGACCGAAGTT+TGG + chr7_4:4893848-4893867 None:intergenic 45.0%
AAAGTATGAAGGACGTGCAG+TGG - chr7_4:4892364-4892383 Msa1136420:CDS 45.0%
AAGTATGAAGGACGTGCAGT+GGG - chr7_4:4892365-4892384 Msa1136420:CDS 45.0%
!!! AAGGTGTGGTTTTGTTGCCT+TGG + chr7_4:4892469-4892488 None:intergenic 45.0%
GAAAGCAACACAAGAAGGTG+TGG + chr7_4:4892483-4892502 None:intergenic 45.0%
TATGATGCTCTGGCCATTCA+AGG - chr7_4:4892795-4892814 Msa1136420:CDS 45.0%
TGGCCATTCAAGGTCATTTC+TGG - chr7_4:4892805-4892824 Msa1136420:CDS 45.0%
TTCGGTTAAGTACAAGGGAC+AGG - chr7_4:4892849-4892868 Msa1136420:CDS 45.0%
!!! TGAGACTGCAGAGGCATTTT+TGG - chr7_4:4892924-4892943 Msa1136420:CDS 45.0%
!! ATAGATGCTGGTGCTATTGC+TGG - chr7_4:4893015-4893034 Msa1136420:CDS 45.0%
!! TTCATCTTTGACTTGGGTGG+TGG - chr7_4:4893132-4893151 Msa1136420:CDS 45.0%
!! TCATCTTTGACTTGGGTGGT+GGG - chr7_4:4893133-4893152 Msa1136420:CDS 45.0%
! GGGGAGAGGACATTGATAAT+AGG - chr7_4:4893232-4893251 Msa1136420:CDS 45.0%
AGCCTTAAGGAGGTTGAGAA+CGG - chr7_4:4893320-4893339 Msa1136420:CDS 45.0%
AATCACTCGTGCCAAGTTTG+AGG - chr7_4:4893434-4893453 Msa1136420:CDS 45.0%
!! TAAGAGCATCAACCCAGATG+AGG - chr7_4:4893626-4893645 Msa1136420:CDS 45.0%
CATAAGCAACAGCCTCATCT+GGG + chr7_4:4893641-4893660 None:intergenic 45.0%
! CAAGCTGCTTTGTTGAGTGA+AGG - chr7_4:4893672-4893691 Msa1136420:CDS 45.0%
GATGTTGCTCCTTTGTCTCT+TGG - chr7_4:4893726-4893745 Msa1136420:CDS 45.0%
CATTGATGAGGACCGAAGTT+TGG + chr7_4:4893848-4893867 None:intergenic 45.0%
AAAGATGCGTGAGACTGCAG+AGG - chr7_4:4892915-4892934 Msa1136420:CDS 50.0%
CGGAAAGCCACAATAGATGC+TGG - chr7_4:4893003-4893022 Msa1136420:CDS 50.0%
TACGCAATAGCTGCAGCAGT+AGG + chr7_4:4893069-4893088 None:intergenic 50.0%
ACTGCTGCAGCTATTGCGTA+TGG - chr7_4:4893069-4893088 Msa1136420:CDS 50.0%
TGCAGCTATTGCGTATGGAC+TGG - chr7_4:4893074-4893093 Msa1136420:CDS 50.0%
ACTGCCGGAAACACTCATCT+TGG - chr7_4:4893210-4893229 Msa1136420:CDS 50.0%
CTGCCGGAAACACTCATCTT+GGG - chr7_4:4893211-4893230 Msa1136420:CDS 50.0%
TGCCGGAAACACTCATCTTG+GGG - chr7_4:4893212-4893231 Msa1136420:CDS 50.0%
TCCCCCAAGATGAGTGTTTC+CGG + chr7_4:4893217-4893236 None:intergenic 50.0%
AAACACTCATCTTGGGGGAG+AGG - chr7_4:4893218-4893237 Msa1136420:CDS 50.0%
GTGAGAACGCAAGAGCCTTA+AGG - chr7_4:4893307-4893326 Msa1136420:CDS 50.0%
AGAACGCAAGAGCCTTAAGG+AGG - chr7_4:4893310-4893329 Msa1136420:CDS 50.0%
! TTCTAGAAGAGCCACCGACA+AGG + chr7_4:4893554-4893573 None:intergenic 50.0%
! GCAGGAATTTTTCGCAGGGA+AGG - chr7_4:4893596-4893615 Msa1136420:CDS 50.0%
CCATAAGCAACAGCCTCATC+TGG + chr7_4:4893642-4893661 None:intergenic 50.0%
! CCAGATGAGGCTGTTGCTTA+TGG - chr7_4:4893639-4893658 Msa1136420:CDS 50.0%
GCTGGTGACAACAATCTGCT+TGG - chr7_4:4893891-4893910 Msa1136420:CDS 50.0%
GCATACACTCAAGCTCCTTC+AGG + chr7_4:4894325-4894344 None:intergenic 50.0%
AAAGATGCGTGAGACTGCAG+AGG - chr7_4:4892915-4892934 Msa1136420:CDS 50.0%
CGGAAAGCCACAATAGATGC+TGG - chr7_4:4893003-4893022 Msa1136420:CDS 50.0%
TACGCAATAGCTGCAGCAGT+AGG + chr7_4:4893069-4893088 None:intergenic 50.0%
ACTGCTGCAGCTATTGCGTA+TGG - chr7_4:4893069-4893088 Msa1136420:CDS 50.0%
TGCAGCTATTGCGTATGGAC+TGG - chr7_4:4893074-4893093 Msa1136420:CDS 50.0%
ACTGCCGGAAACACTCATCT+TGG - chr7_4:4893210-4893229 Msa1136420:CDS 50.0%
CTGCCGGAAACACTCATCTT+GGG - chr7_4:4893211-4893230 Msa1136420:CDS 50.0%
TGCCGGAAACACTCATCTTG+GGG - chr7_4:4893212-4893231 Msa1136420:CDS 50.0%
TCCCCCAAGATGAGTGTTTC+CGG + chr7_4:4893217-4893236 None:intergenic 50.0%
AAACACTCATCTTGGGGGAG+AGG - chr7_4:4893218-4893237 Msa1136420:CDS 50.0%
GTGAGAACGCAAGAGCCTTA+AGG - chr7_4:4893307-4893326 Msa1136420:CDS 50.0%
AGAACGCAAGAGCCTTAAGG+AGG - chr7_4:4893310-4893329 Msa1136420:CDS 50.0%
! TTCTAGAAGAGCCACCGACA+AGG + chr7_4:4893554-4893573 None:intergenic 50.0%
! GCAGGAATTTTTCGCAGGGA+AGG - chr7_4:4893596-4893615 Msa1136420:CDS 50.0%
CCATAAGCAACAGCCTCATC+TGG + chr7_4:4893642-4893661 None:intergenic 50.0%
! CCAGATGAGGCTGTTGCTTA+TGG - chr7_4:4893639-4893658 Msa1136420:CDS 50.0%
GCTGGTGACAACAATCTGCT+TGG - chr7_4:4893891-4893910 Msa1136420:CDS 50.0%
GCATACACTCAAGCTCCTTC+AGG + chr7_4:4894325-4894344 None:intergenic 50.0%
CGTGCAGTGGGAATCGATCT+TGG - chr7_4:4892377-4892396 Msa1136420:CDS 55.0%
CGTATTCGTGCGTTGCTGTG+TGG - chr7_4:4892405-4892424 Msa1136420:CDS 55.0%
GCCGGAAACACTCATCTTGG+GGG - chr7_4:4893213-4893232 Msa1136420:CDS 55.0%
CGCCGTTCTCAACCTCCTTA+AGG + chr7_4:4893325-4893344 None:intergenic 55.0%
CGCTGTCATCACCACCATTG+AGG - chr7_4:4893374-4893393 Msa1136420:CDS 55.0%
CATGATGTCGTCCTTGTCGG+TGG - chr7_4:4893540-4893559 Msa1136420:CDS 55.0%
TCCTCGTGGTCACCCTTTAG+AGG - chr7_4:4893941-4893960 Msa1136420:CDS 55.0%
! ACCTCTAAAGGGTGACCACG+AGG + chr7_4:4893945-4893964 None:intergenic 55.0%
CGTGCAGTGGGAATCGATCT+TGG - chr7_4:4892377-4892396 Msa1136420:CDS 55.0%
CGTATTCGTGCGTTGCTGTG+TGG - chr7_4:4892405-4892424 Msa1136420:CDS 55.0%
GCCGGAAACACTCATCTTGG+GGG - chr7_4:4893213-4893232 Msa1136420:CDS 55.0%
CGCCGTTCTCAACCTCCTTA+AGG + chr7_4:4893325-4893344 None:intergenic 55.0%
CGCTGTCATCACCACCATTG+AGG - chr7_4:4893374-4893393 Msa1136420:CDS 55.0%
CATGATGTCGTCCTTGTCGG+TGG - chr7_4:4893540-4893559 Msa1136420:CDS 55.0%
TCCTCGTGGTCACCCTTTAG+AGG - chr7_4:4893941-4893960 Msa1136420:CDS 55.0%
! ACCTCTAAAGGGTGACCACG+AGG + chr7_4:4893945-4893964 None:intergenic 55.0%
GAGGGTGAGAGAGCAAGAGC+TGG - chr7_4:4893873-4893892 Msa1136420:CDS 60.0%
GAGGGTGAGAGAGCAAGAGC+TGG - chr7_4:4893873-4893892 Msa1136420:CDS 60.0%
TCTGTCCCACGTGCTCCTCG+TGG - chr7_4:4893927-4893946 Msa1136420:CDS 65.0%
! GGTGACCACGAGGAGCACGT+GGG + chr7_4:4893935-4893954 None:intergenic 65.0%
TCTGTCCCACGTGCTCCTCG+TGG - chr7_4:4893927-4893946 Msa1136420:CDS 65.0%
! GGTGACCACGAGGAGCACGT+GGG + chr7_4:4893935-4893954 None:intergenic 65.0%
! GGGTGACCACGAGGAGCACG+TGG + chr7_4:4893936-4893955 None:intergenic 70.0%
! GGGTGACCACGAGGAGCACG+TGG + chr7_4:4893936-4893955 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 4892356 4894373 4892356 ID=Msa1136420;Name=Msa1136420
chr7_4 mRNA 4892356 4894373 4892356 ID=Msa1136420-mRNA-1;Parent=Msa1136420;Name=Msa1136420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|616
chr7_4 exon 4894154 4894373 4894154 ID=Msa1136420-mRNA-1:exon:1305;Parent=Msa1136420-mRNA-1
chr7_4 exon 4892356 4893986 4892356 ID=Msa1136420-mRNA-1:exon:1304;Parent=Msa1136420-mRNA-1
chr7_4 CDS 4894154 4894373 4894154 ID=Msa1136420-mRNA-1:cds;Parent=Msa1136420-mRNA-1
chr7_4 CDS 4892356 4893986 4892356 ID=Msa1136420-mRNA-1:cds;Parent=Msa1136420-mRNA-1
Gene Sequence

>Msa1136420

ATGGCAAAAAAGTATGAAGGACGTGCAGTGGGAATCGATCTTGGAACGACGTATTCGTGCGTTGCTGTGTGGCTAGATGAACACATCAGAGTTGAGATTATTCACAATGACCAAGGCAACAAAACCACACCTTCTTGTGTTGCTTTCACTGATGATCAAAGATTGGTTGGTGATGCAGCTAAGAATCAAGCTGCCACAAACCCTGAAAACACTGTTTTTGATGCAAAGAGGTTAATTGGTAGGAAGTTTGATGATTCTGTTGTTCAAAACGATATGATGCTCTGGCCATTCAAGGTCATTTCTGGAGTGAATGACAAACCCTTGATTTCGGTTAAGTACAAGGGACAGGAGATGCACCTATGTGCTGAAGAAATCTCATCTATGGTTCTAACAAAGATGCGTGAGACTGCAGAGGCATTTTTGGAATTGCCTGTCAAGAATGCAGTTGTTACCGTACCTGCTTATTTCAATGATGCTCAGCGGAAAGCCACAATAGATGCTGGTGCTATTGCTGGCCTTAATATTATGCGGATAATCAATGAGCCTACTGCTGCAGCTATTGCGTATGGACTGGACAAGAGAACTAATTGTGTGGAGGAGCGTAATATTTTCATCTTTGACTTGGGTGGTGGGACTTTTGATGTGTCCCTCCTTACAATTAACGATAAGGTCTTTCAAGTTAAGGCTACTGCCGGAAACACTCATCTTGGGGGAGAGGACATTGATAATAGGATGGTGAACTACTTTGCAAAGGAGTTTAAGAAGAAGAACAAGGTAGACATTAGTGAGAACGCAAGAGCCTTAAGGAGGTTGAGAACGGCGTGTGAAAGAGCAAAACGAATACTATCTTTCGCTGTCATCACCACCATTGAGGTAGATTCTTTATTTCAAGGCTTTGACTTCTTTTCATCAATCACTCGTGCCAAGTTTGAGGAAATAAATATGGATCTTTTCAACGAGTGTTTGGAAACTGTTGAGAGTTGTCTTGCTGATGCCAAAATGGACAAAAGTGCTATACATGATGTCGTCCTTGTCGGTGGCTCTTCTAGAATTCCAAAAGTACAACAACTATTGCAGGAATTTTTCGCAGGGAAGGATCTGTGTAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTGTGCAAGCTGCTTTGTTGAGTGAAGGCTTTAAAAATGTACCAAACTTGGTGATGCAAGATGTTGCTCCTTTGTCTCTTGGTATCGAAGTTAATGATGATATAATGGGTGTTGTTATTGCTAGAAACACTAGCATTCCTATCAAGAAAACAAAAGGTTATTCAACGTCTAGTGATAACCAAACTTCGGTCCTCATCAATGTTTATGAGGGTGAGAGAGCAAGAGCTGGTGACAACAATCTGCTTGGTTCTTTTAGTCTTTCTGTCCCACGTGCTCCTCGTGGTCACCCTTTAGAGGTATGCTTTACTATCAATGAAAATGGCATCTTAATTGTTTCTGCAAATGAAAAATCCACTGGTAATACGAATGAGATTACAGTAACAAATGACAAAGAAAGATTGTCATCCCAAGAAATTACAAAAATGATCAGTGAAGCTGAAAATTACCGTGTTGAGGATGAAAAATTTCTAAGGAAGGCCAATGTAATGAATGCATTAGATTATTGTGTTTACAAGGTGAAAAATGCTTTGAAGAAGAAAGATGTGAATCTAAAGCTCTCTTCTCAAGAAAATGACGAGATCAATTCTGCAATCACAAAGGCCACAAGTTTACTTGATAGTACCCAACAGAGTGAAATAGATGTTCTTGAAAATCACCTGAAGGAGCTTGAGTGTATGCTCCAACTCATTATAAACAAATCTGTCTAG
Protein sequence

>Msa1136420

MAKKYEGRAVGIDLGTTYSCVAVWLDEHIRVEIIHNDQGNKTTPSCVAFTDDQRLVGDAAKNQAATNPENTVFDAKRLIGRKFDDSVVQNDMMLWPFKVISGVNDKPLISVKYKGQEMHLCAEEISSMVLTKMRETAEAFLELPVKNAVVTVPAYFNDAQRKATIDAGAIAGLNIMRIINEPTAAAIAYGLDKRTNCVEERNIFIFDLGGGTFDVSLLTINDKVFQVKATAGNTHLGGEDIDNRMVNYFAKEFKKKNKVDISENARALRRLRTACERAKRILSFAVITTIEVDSLFQGFDFFSSITRAKFEEINMDLFNECLETVESCLADAKMDKSAIHDVVLVGGSSRIPKVQQLLQEFFAGKDLCKSINPDEAVAYGAAVQAALLSEGFKNVPNLVMQDVAPLSLGIEVNDDIMGVVIARNTSIPIKKTKGYSTSSDNQTSVLINVYEGERARAGDNNLLGSFSLSVPRAPRGHPLEVCFTINENGILIVSANEKSTGNTNEITVTNDKERLSSQEITKMISEAENYRVEDEKFLRKANVMNALDYCVYKVKNALKKKDVNLKLSSQENDEINSAITKATSLLDSTQQSEIDVLENHLKELECMLQLIINKSV*