Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008660 | XP_003621459.2 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.51e-78 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008660 | sp|O82089|CCH_ARATH | 80.303 | 66 | 13 | 0 | 3 | 68 | 2 | 67 | 1.22e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008660 | B7FJ81 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 1.20e-78 | 237 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1008660 | Msa1008690 | 0.981510 | 9.155469e-153 | -8.615850e-47 |
| Msa1008660 | Msa1012180 | 0.833645 | 4.735667e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008660 | MtrunA17_Chr7g0218981 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.31e-82 | 237 |
| Msa1008660 | MtrunA17_Chr1g0198341 | 66.667 | 81 | 25 | 2 | 1 | 81 | 1 | 79 | 3.69e-30 | 103 |
| Msa1008660 | MtrunA17_Chr4g0050571 | 47.692 | 65 | 33 | 1 | 4 | 68 | 101 | 164 | 1.43e-16 | 71.6 |
| Msa1008660 | MtrunA17_Chr1g0189221 | 37.349 | 83 | 51 | 1 | 1 | 83 | 50 | 131 | 8.19e-15 | 67.0 |
| Msa1008660 | MtrunA17_Chr1g0182101 | 44.776 | 67 | 36 | 1 | 2 | 68 | 183 | 248 | 1.04e-14 | 68.2 |
| Msa1008660 | MtrunA17_Chr1g0192131 | 41.667 | 72 | 41 | 1 | 1 | 71 | 12 | 83 | 1.24e-14 | 68.9 |
| Msa1008660 | MtrunA17_Chr8g0382721 | 50.000 | 64 | 32 | 0 | 5 | 68 | 30 | 93 | 1.80e-14 | 65.5 |
| Msa1008660 | MtrunA17_Chr3g0145621 | 48.485 | 66 | 33 | 1 | 4 | 68 | 26 | 91 | 2.06e-14 | 65.5 |
| Msa1008660 | MtrunA17_Chr7g0263491 | 40.000 | 85 | 44 | 2 | 2 | 86 | 207 | 284 | 6.28e-14 | 66.2 |
| Msa1008660 | MtrunA17_Chr2g0325601 | 44.615 | 65 | 36 | 0 | 8 | 72 | 6 | 70 | 6.31e-14 | 63.9 |
| Msa1008660 | MtrunA17_Chr3g0115421 | 44.444 | 63 | 35 | 0 | 6 | 68 | 28 | 90 | 6.77e-14 | 63.9 |
| Msa1008660 | MtrunA17_Chr4g0030661 | 46.154 | 65 | 34 | 1 | 4 | 68 | 212 | 275 | 8.94e-14 | 65.9 |
| Msa1008660 | MtrunA17_Chr3g0124411 | 47.692 | 65 | 34 | 0 | 4 | 68 | 30 | 94 | 1.42e-13 | 63.2 |
| Msa1008660 | MtrunA17_Chr7g0269081 | 39.706 | 68 | 41 | 0 | 1 | 68 | 19 | 86 | 3.15e-13 | 64.7 |
| Msa1008660 | MtrunA17_Chr1g0160201 | 43.077 | 65 | 37 | 0 | 4 | 68 | 25 | 89 | 4.61e-13 | 62.0 |
| Msa1008660 | MtrunA17_Chr2g0287751 | 42.424 | 66 | 38 | 0 | 7 | 72 | 13 | 78 | 1.12e-12 | 63.5 |
| Msa1008660 | MtrunA17_Chr3g0111541 | 35.484 | 93 | 60 | 0 | 1 | 93 | 9 | 101 | 1.88e-12 | 61.6 |
| Msa1008660 | MtrunA17_Chr0c22g0493881 | 40.909 | 66 | 39 | 0 | 7 | 72 | 13 | 78 | 4.58e-12 | 61.6 |
| Msa1008660 | MtrunA17_Chr7g0251491 | 48.485 | 66 | 33 | 1 | 4 | 68 | 48 | 113 | 4.96e-12 | 59.7 |
| Msa1008660 | MtrunA17_Chr4g0065621 | 40.909 | 66 | 39 | 0 | 7 | 72 | 13 | 78 | 6.01e-12 | 61.2 |
| Msa1008660 | MtrunA17_Chr5g0422891 | 36.923 | 65 | 41 | 0 | 4 | 68 | 25 | 89 | 9.47e-12 | 58.5 |
| Msa1008660 | MtrunA17_Chr1g0208301 | 40.000 | 65 | 39 | 0 | 4 | 68 | 13 | 77 | 1.32e-11 | 60.1 |
| Msa1008660 | MtrunA17_Chr5g0405811 | 43.939 | 66 | 36 | 1 | 4 | 68 | 29 | 94 | 1.73e-11 | 57.8 |
| Msa1008660 | MtrunA17_Chr8g0390711 | 38.462 | 65 | 39 | 1 | 4 | 68 | 66 | 129 | 1.98e-11 | 57.4 |
| Msa1008660 | MtrunA17_Chr4g0036931 | 45.455 | 66 | 35 | 1 | 4 | 68 | 28 | 93 | 2.10e-11 | 57.8 |
| Msa1008660 | MtrunA17_Chr5g0407821 | 37.363 | 91 | 55 | 1 | 4 | 92 | 23 | 113 | 2.27e-11 | 57.4 |
| Msa1008660 | MtrunA17_Chr7g0272571 | 37.500 | 72 | 43 | 1 | 4 | 75 | 33 | 102 | 2.55e-11 | 59.3 |
| Msa1008660 | MtrunA17_Chr6g0485081 | 37.143 | 70 | 43 | 1 | 4 | 73 | 65 | 133 | 2.62e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008660 | AT3G56240.3 | 80.303 | 66 | 13 | 0 | 3 | 68 | 2 | 67 | 1.24e-33 | 114 |
| Msa1008660 | AT3G56240.1 | 80.303 | 66 | 13 | 0 | 3 | 68 | 2 | 67 | 1.24e-33 | 114 |
| Msa1008660 | AT1G66240.1 | 74.242 | 66 | 17 | 0 | 3 | 68 | 32 | 97 | 1.93e-31 | 108 |
| Msa1008660 | AT3G56240.2 | 82.456 | 57 | 10 | 0 | 12 | 68 | 1 | 57 | 1.46e-29 | 103 |
| Msa1008660 | AT1G66240.2 | 75.439 | 57 | 14 | 0 | 12 | 68 | 1 | 57 | 9.98e-27 | 94.7 |
| Msa1008660 | AT2G37390.2 | 45.588 | 68 | 36 | 1 | 4 | 71 | 180 | 246 | 9.63e-17 | 73.9 |
| Msa1008660 | AT2G37390.1 | 45.588 | 68 | 36 | 1 | 4 | 71 | 181 | 247 | 9.65e-17 | 73.9 |
| Msa1008660 | AT1G06330.1 | 43.478 | 69 | 39 | 0 | 5 | 73 | 3 | 71 | 3.81e-15 | 67.8 |
| Msa1008660 | AT2G18196.1 | 33.333 | 90 | 60 | 0 | 1 | 90 | 43 | 132 | 1.14e-14 | 67.0 |
| Msa1008660 | AT3G53530.1 | 44.444 | 72 | 37 | 2 | 2 | 71 | 166 | 236 | 3.21e-14 | 67.0 |
| Msa1008660 | AT5G02600.2 | 44.928 | 69 | 37 | 1 | 2 | 70 | 248 | 315 | 4.19e-14 | 67.4 |
| Msa1008660 | AT5G02600.1 | 44.928 | 69 | 37 | 1 | 2 | 70 | 248 | 315 | 4.19e-14 | 67.4 |
| Msa1008660 | AT5G27690.1 | 39.706 | 68 | 41 | 0 | 1 | 68 | 27 | 94 | 6.83e-14 | 67.0 |
| Msa1008660 | AT1G71050.1 | 44.615 | 65 | 36 | 0 | 4 | 68 | 28 | 92 | 2.18e-13 | 63.2 |
| Msa1008660 | AT3G56891.1 | 42.424 | 66 | 38 | 0 | 8 | 73 | 20 | 85 | 2.85e-13 | 63.2 |
| Msa1008660 | AT5G17450.1 | 46.154 | 65 | 35 | 0 | 4 | 68 | 26 | 90 | 3.53e-13 | 62.4 |
| Msa1008660 | AT3G06130.2 | 40.000 | 80 | 46 | 1 | 1 | 78 | 7 | 86 | 4.07e-13 | 64.7 |
| Msa1008660 | AT3G53530.2 | 43.836 | 73 | 37 | 3 | 2 | 71 | 166 | 237 | 1.67e-12 | 62.4 |
| Msa1008660 | AT3G56891.2 | 41.935 | 62 | 36 | 0 | 12 | 73 | 1 | 62 | 2.01e-12 | 60.5 |
| Msa1008660 | AT4G08570.1 | 42.424 | 66 | 37 | 1 | 4 | 68 | 26 | 91 | 2.46e-12 | 60.5 |
| Msa1008660 | AT4G38580.1 | 48.485 | 66 | 33 | 1 | 4 | 68 | 26 | 91 | 1.04e-11 | 58.9 |
| Msa1008660 | AT4G38580.2 | 48.485 | 66 | 33 | 1 | 4 | 68 | 26 | 91 | 1.04e-11 | 58.9 |
| Msa1008660 | AT3G06130.1 | 40.000 | 80 | 46 | 1 | 1 | 78 | 7 | 86 | 2.54e-11 | 59.7 |
| Msa1008660 | AT2G28660.1 | 41.538 | 65 | 37 | 1 | 4 | 68 | 183 | 246 | 2.75e-11 | 59.3 |
| Msa1008660 | AT5G19090.5 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 3.83e-11 | 59.3 |
| Msa1008660 | AT5G19090.4 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 3.83e-11 | 59.3 |
| Msa1008660 | AT5G19090.1 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 3.83e-11 | 59.3 |
| Msa1008660 | AT5G19090.2 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 4.49e-11 | 59.3 |
| Msa1008660 | AT5G19090.3 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 4.49e-11 | 59.3 |
| Msa1008660 | AT5G66110.3 | 43.939 | 66 | 36 | 1 | 4 | 68 | 19 | 84 | 5.50e-11 | 56.6 |
| Msa1008660 | AT5G66110.1 | 43.939 | 66 | 36 | 1 | 4 | 68 | 19 | 84 | 5.50e-11 | 56.6 |
| Msa1008660 | AT4G10465.1 | 37.037 | 81 | 51 | 0 | 1 | 81 | 48 | 128 | 6.36e-11 | 57.4 |
| Msa1008660 | AT2G18196.2 | 37.705 | 61 | 38 | 0 | 12 | 72 | 1 | 61 | 8.57e-11 | 55.8 |
| Msa1008660 | AT3G24450.1 | 37.500 | 64 | 39 | 1 | 8 | 71 | 78 | 140 | 9.21e-11 | 56.2 |
Find 33 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTGTTTCCAAAAC+TGG | 0.256325 | 7_1:+9206979 | Msa1008660:CDS |
| CTGGAAAGAAAACTGAATTC+TGG | 0.285081 | 7_1:+9206998 | Msa1008660:CDS |
| GGCTTGTTAGTAGGCTCAAC+AGG | 0.298886 | 7_1:-9207102 | None:intergenic |
| ATGTCATGCTCAGGGTGTTC+TGG | 0.301912 | 7_1:+9206638 | Msa1008660:CDS |
| CTTTCAATGTAATGTGTTAC+TGG | 0.309944 | 7_1:+9207275 | Msa1008660:three_prime_UTR |
| TATTCTCAATTGGATGGTTA+TGG | 0.311408 | 7_1:-9205584 | None:intergenic |
| GTTTCAGAAGGCTTGTTCTC+AGG | 0.371880 | 7_1:-9207156 | None:intergenic |
| TGGAATGAGGGTTGTGGTAA+TGG | 0.374060 | 7_1:-9205564 | None:intergenic |
| GTTTCAGATGGCTTGTTAGT+AGG | 0.387494 | 7_1:-9207111 | None:intergenic |
| ATAATGAGTAATTAGCAATA+AGG | 0.392516 | 7_1:-9207392 | None:intergenic |
| GCCTCAGTTGTAGTTTCTGT+TGG | 0.393904 | 7_1:-9207039 | None:intergenic |
| TGGAAAGAAAACTGAATTCT+GGG | 0.412510 | 7_1:+9206999 | Msa1008660:CDS |
| GGTGTTCTGGAGCAGTCAAT+AGG | 0.414189 | 7_1:+9206651 | Msa1008660:CDS |
| AGGTAGAATGTATTCTCAAT+TGG | 0.460923 | 7_1:-9205594 | None:intergenic |
| AATTGGATGGTTATGGAATG+AGG | 0.473841 | 7_1:-9205577 | None:intergenic |
| GTGTTCTGGAGCAGTCAATA+GGG | 0.483895 | 7_1:+9206652 | Msa1008660:CDS |
| TGGAGCAGTCAATAGGGTCT+TGG | 0.484572 | 7_1:+9206658 | Msa1008660:CDS |
| TGAGTCTTATGCAGCAATAG+TGG | 0.519716 | 7_1:-9207181 | None:intergenic |
| ATGTAATGTGTTACTGGTGG+TGG | 0.529064 | 7_1:+9207281 | Msa1008660:three_prime_UTR |
| ACAACTGTGGCAGTTTCAGA+TGG | 0.563103 | 7_1:-9207123 | None:intergenic |
| GCAATAGTGGCAGTTTCAGA+AGG | 0.563446 | 7_1:-9207168 | None:intergenic |
| AGAATGTATTCTCAATTGGA+TGG | 0.565238 | 7_1:-9205590 | None:intergenic |
| TGGTTATGGAATGAGGGTTG+TGG | 0.570007 | 7_1:-9205570 | None:intergenic |
| ATTAAGCACCTCAGAAGACA+TGG | 0.603016 | 7_1:-9205649 | None:intergenic |
| TGAGGGTTGTGGTAATGGAG+TGG | 0.609964 | 7_1:-9205559 | None:intergenic |
| GCCAACAGAAACTACAACTG+AGG | 0.613014 | 7_1:+9207038 | Msa1008660:CDS |
| ATTGGATGGTTATGGAATGA+GGG | 0.624285 | 7_1:-9205576 | None:intergenic |
| ACTCATAACCATGTCTTCTG+AGG | 0.637871 | 7_1:+9205641 | Msa1008660:exon |
| ATTGCTGCATAAGACTCATG+TGG | 0.676195 | 7_1:+9207186 | Msa1008660:exon |
| AAAGAAAACTGAATTCTGGG+TGG | 0.688074 | 7_1:+9207002 | Msa1008660:CDS |
| GCTTGTTAGTAGGCTCAACA+GGG | 0.689513 | 7_1:-9207101 | None:intergenic |
| TCAATGTAATGTGTTACTGG+TGG | 0.697193 | 7_1:+9207278 | Msa1008660:three_prime_UTR |
| AGGCTCAATAGAGACAACTG+TGG | 0.783127 | 7_1:-9207136 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATTCTTAGAAAATT+TGG | + | chr7_1:9205887-9205906 | Msa1008660:intron | 10.0% |
| !!! | GTAAATATCATTTTTTATAA+AGG | - | chr7_1:9206561-9206580 | None:intergenic | 10.0% |
| !! | TTAATAATTCTTAGAAAATT+TGG | + | chr7_1:9205887-9205906 | Msa1008660:intron | 10.0% |
| !!! | GTAAATATCATTTTTTATAA+AGG | - | chr7_1:9206561-9206580 | None:intergenic | 10.0% |
| !! | TAAACAAAATACAAAAAAGT+AGG | - | chr7_1:9205870-9205889 | None:intergenic | 15.0% |
| !!! | AAATCTTTAGTTTTACTTTT+AGG | + | chr7_1:9206130-9206149 | Msa1008660:intron | 15.0% |
| !! | ATTAGAAATTCATATTGATA+AGG | + | chr7_1:9206368-9206387 | Msa1008660:intron | 15.0% |
| !! | AATGATATTTACTATGAATT+TGG | + | chr7_1:9206569-9206588 | Msa1008660:intron | 15.0% |
| !! | TAAACAAAATACAAAAAAGT+AGG | - | chr7_1:9205870-9205889 | None:intergenic | 15.0% |
| !!! | AAATCTTTAGTTTTACTTTT+AGG | + | chr7_1:9206130-9206149 | Msa1008660:intron | 15.0% |
| !! | ATTAGAAATTCATATTGATA+AGG | + | chr7_1:9206368-9206387 | Msa1008660:intron | 15.0% |
| !! | AATGATATTTACTATGAATT+TGG | + | chr7_1:9206569-9206588 | Msa1008660:intron | 15.0% |
| !! | TTGTTGATCTTGAATTAATA+TGG | + | chr7_1:9205696-9205715 | Msa1008660:intron | 20.0% |
| !! | TAATCATTATTGCTTTCTTA+GGG | - | chr7_1:9206091-9206110 | None:intergenic | 20.0% |
| !! | ATAATCATTATTGCTTTCTT+AGG | - | chr7_1:9206092-9206111 | None:intergenic | 20.0% |
| !!! | GTTTGATTTTGTTTTTTTGA+TGG | + | chr7_1:9206207-9206226 | Msa1008660:intron | 20.0% |
| !! | AAAAGAATAAGAAAAAAGCA+GGG | - | chr7_1:9206322-9206341 | None:intergenic | 20.0% |
| !! | TAAAAGAATAAGAAAAAAGC+AGG | - | chr7_1:9206323-9206342 | None:intergenic | 20.0% |
| !! | AATGGAAAATAATTTGAACA+TGG | - | chr7_1:9206505-9206524 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTACGT+CGG | - | chr7_1:9206786-9206805 | None:intergenic | 20.0% |
| !! | ACATAATTTAGTGTAATCAT+AGG | + | chr7_1:9206811-9206830 | Msa1008660:intron | 20.0% |
| !! | TTTGATACAATATTCAAAGA+GGG | - | chr7_1:9206863-9206882 | None:intergenic | 20.0% |
| !!! | TTTTGATACAATATTCAAAG+AGG | - | chr7_1:9206864-9206883 | None:intergenic | 20.0% |
| !! | ATAATGAGTAATTAGCAATA+AGG | - | chr7_1:9207395-9207414 | None:intergenic | 20.0% |
| !! | TTGTTGATCTTGAATTAATA+TGG | + | chr7_1:9205696-9205715 | Msa1008660:intron | 20.0% |
| !! | TAATCATTATTGCTTTCTTA+GGG | - | chr7_1:9206091-9206110 | None:intergenic | 20.0% |
| !! | ATAATCATTATTGCTTTCTT+AGG | - | chr7_1:9206092-9206111 | None:intergenic | 20.0% |
| !!! | GTTTGATTTTGTTTTTTTGA+TGG | + | chr7_1:9206207-9206226 | Msa1008660:intron | 20.0% |
| !! | AAAAGAATAAGAAAAAAGCA+GGG | - | chr7_1:9206322-9206341 | None:intergenic | 20.0% |
| !! | TAAAAGAATAAGAAAAAAGC+AGG | - | chr7_1:9206323-9206342 | None:intergenic | 20.0% |
| !! | AATGGAAAATAATTTGAACA+TGG | - | chr7_1:9206505-9206524 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTACGT+CGG | - | chr7_1:9206786-9206805 | None:intergenic | 20.0% |
| !! | ACATAATTTAGTGTAATCAT+AGG | + | chr7_1:9206811-9206830 | Msa1008660:intron | 20.0% |
| !! | TTTGATACAATATTCAAAGA+GGG | - | chr7_1:9206863-9206882 | None:intergenic | 20.0% |
| !!! | TTTTGATACAATATTCAAAG+AGG | - | chr7_1:9206864-9206883 | None:intergenic | 20.0% |
| !! | ATAATGAGTAATTAGCAATA+AGG | - | chr7_1:9207395-9207414 | None:intergenic | 20.0% |
| ! | AAGAAAAGTGAACAAAAAAG+AGG | - | chr7_1:9205617-9205636 | None:intergenic | 25.0% |
| ! | CAAAATACAAAAAAGTAGGA+AGG | - | chr7_1:9205866-9205885 | None:intergenic | 25.0% |
| ! | CTAAAGATTTGTAACAAACA+AGG | - | chr7_1:9206120-9206139 | None:intergenic | 25.0% |
| ! | ACTAATAACATCGCAAATTT+AGG | - | chr7_1:9206189-9206208 | None:intergenic | 25.0% |
| ! | ATAACACATTTGTTCTTTAC+AGG | + | chr7_1:9206883-9206902 | Msa1008660:intron | 25.0% |
| ! | AAGAAAAGTGAACAAAAAAG+AGG | - | chr7_1:9205617-9205636 | None:intergenic | 25.0% |
| ! | CAAAATACAAAAAAGTAGGA+AGG | - | chr7_1:9205866-9205885 | None:intergenic | 25.0% |
| ! | CTAAAGATTTGTAACAAACA+AGG | - | chr7_1:9206120-9206139 | None:intergenic | 25.0% |
| ! | ACTAATAACATCGCAAATTT+AGG | - | chr7_1:9206189-9206208 | None:intergenic | 25.0% |
| ! | ATAACACATTTGTTCTTTAC+AGG | + | chr7_1:9206883-9206902 | Msa1008660:intron | 25.0% |
| TATTCTCAATTGGATGGTTA+TGG | - | chr7_1:9205587-9205606 | None:intergenic | 30.0% | |
| AGAATGTATTCTCAATTGGA+TGG | - | chr7_1:9205593-9205612 | None:intergenic | 30.0% | |
| AGGTAGAATGTATTCTCAAT+TGG | - | chr7_1:9205597-9205616 | None:intergenic | 30.0% | |
| AAACAAGGAACTATAGATCA+AGG | - | chr7_1:9205789-9205808 | None:intergenic | 30.0% | |
| ! | ATCACAAAACGTCTAAAACA+AGG | - | chr7_1:9205804-9205823 | None:intergenic | 30.0% |
| TGCTTTATCAAGTTATGCTA+AGG | + | chr7_1:9206251-9206270 | Msa1008660:intron | 30.0% | |
| ATTGATAAGGTGAATAAGTG+AGG | + | chr7_1:9206381-9206400 | Msa1008660:intron | 30.0% | |
| ATTTGAGAGTTAATCTCACA+AGG | + | chr7_1:9206458-9206477 | Msa1008660:intron | 30.0% | |
| ! | AGCATGACATTTTTACTTTG+AGG | - | chr7_1:9206628-9206647 | None:intergenic | 30.0% |
| AAAGTAAAAATGTCATGCTC+AGG | + | chr7_1:9206629-9206648 | Msa1008660:CDS | 30.0% | |
| AAGTAAAAATGTCATGCTCA+GGG | + | chr7_1:9206630-9206649 | Msa1008660:CDS | 30.0% | |
| !! | AAGCTGAGATAATTTGCTTT+AGG | - | chr7_1:9206708-9206727 | None:intergenic | 30.0% |
| GTTGTGAAAACAGTAAAACA+CGG | + | chr7_1:9206732-9206751 | Msa1008660:intron | 30.0% | |
| ! | TTCAGTTTTCTTTCCAGTTT+TGG | - | chr7_1:9206995-9207014 | None:intergenic | 30.0% |
| TGGAAAGAAAACTGAATTCT+GGG | + | chr7_1:9206999-9207018 | Msa1008660:CDS | 30.0% | |
| CTTTCAATGTAATGTGTTAC+TGG | + | chr7_1:9207275-9207294 | Msa1008660:three_prime_UTR | 30.0% | |
| TATTCTCAATTGGATGGTTA+TGG | - | chr7_1:9205587-9205606 | None:intergenic | 30.0% | |
| AGAATGTATTCTCAATTGGA+TGG | - | chr7_1:9205593-9205612 | None:intergenic | 30.0% | |
| AGGTAGAATGTATTCTCAAT+TGG | - | chr7_1:9205597-9205616 | None:intergenic | 30.0% | |
| AAACAAGGAACTATAGATCA+AGG | - | chr7_1:9205789-9205808 | None:intergenic | 30.0% | |
| ! | ATCACAAAACGTCTAAAACA+AGG | - | chr7_1:9205804-9205823 | None:intergenic | 30.0% |
| TGCTTTATCAAGTTATGCTA+AGG | + | chr7_1:9206251-9206270 | Msa1008660:intron | 30.0% | |
| ATTGATAAGGTGAATAAGTG+AGG | + | chr7_1:9206381-9206400 | Msa1008660:intron | 30.0% | |
| ATTTGAGAGTTAATCTCACA+AGG | + | chr7_1:9206458-9206477 | Msa1008660:intron | 30.0% | |
| ! | AGCATGACATTTTTACTTTG+AGG | - | chr7_1:9206628-9206647 | None:intergenic | 30.0% |
| AAAGTAAAAATGTCATGCTC+AGG | + | chr7_1:9206629-9206648 | Msa1008660:CDS | 30.0% | |
| AAGTAAAAATGTCATGCTCA+GGG | + | chr7_1:9206630-9206649 | Msa1008660:CDS | 30.0% | |
| !! | AAGCTGAGATAATTTGCTTT+AGG | - | chr7_1:9206708-9206727 | None:intergenic | 30.0% |
| GTTGTGAAAACAGTAAAACA+CGG | + | chr7_1:9206732-9206751 | Msa1008660:intron | 30.0% | |
| ! | TTCAGTTTTCTTTCCAGTTT+TGG | - | chr7_1:9206995-9207014 | None:intergenic | 30.0% |
| TGGAAAGAAAACTGAATTCT+GGG | + | chr7_1:9206999-9207018 | Msa1008660:CDS | 30.0% | |
| CTTTCAATGTAATGTGTTAC+TGG | + | chr7_1:9207275-9207294 | Msa1008660:three_prime_UTR | 30.0% | |
| ATTGGATGGTTATGGAATGA+GGG | - | chr7_1:9205579-9205598 | None:intergenic | 35.0% | |
| AATTGGATGGTTATGGAATG+AGG | - | chr7_1:9205580-9205599 | None:intergenic | 35.0% | |
| TAGAGAAGACTCATCATCAA+TGG | + | chr7_1:9205922-9205941 | Msa1008660:intron | 35.0% | |
| CATTATTGCTTTCTTAGGGT+TGG | - | chr7_1:9206087-9206106 | None:intergenic | 35.0% | |
| ! | TCGCAAATTTAGGATCAAAC+TGG | - | chr7_1:9206179-9206198 | None:intergenic | 35.0% |
| ! | AGCAGGGCATCAAAAAAAAT+AGG | - | chr7_1:9206306-9206325 | None:intergenic | 35.0% |
| TAGTATATGCAGCAGAAACT+GGG | - | chr7_1:9206423-9206442 | None:intergenic | 35.0% | |
| ATAGTATATGCAGCAGAAAC+TGG | - | chr7_1:9206424-9206443 | None:intergenic | 35.0% | |
| CAATAGGGTCTTGGAAAAAA+TGG | + | chr7_1:9206667-9206686 | Msa1008660:CDS | 35.0% | |
| TAGTGTAATCATAGGTGTCA+TGG | + | chr7_1:9206819-9206838 | Msa1008660:intron | 35.0% | |
| GAACAAAAAGTGACTGTGAA+AGG | + | chr7_1:9206934-9206953 | Msa1008660:CDS | 35.0% | |
| ACAGTGTCAAAAACATCTTG+TGG | - | chr7_1:9206970-9206989 | None:intergenic | 35.0% | |
| TTTGACACTGTTTCCAAAAC+TGG | + | chr7_1:9206979-9206998 | Msa1008660:CDS | 35.0% | |
| CTGGAAAGAAAACTGAATTC+TGG | + | chr7_1:9206998-9207017 | Msa1008660:CDS | 35.0% | |
| AAAGAAAACTGAATTCTGGG+TGG | + | chr7_1:9207002-9207021 | Msa1008660:CDS | 35.0% | |
| ! | TCAATGTAATGTGTTACTGG+TGG | + | chr7_1:9207278-9207297 | Msa1008660:three_prime_UTR | 35.0% |
| ATTGGATGGTTATGGAATGA+GGG | - | chr7_1:9205579-9205598 | None:intergenic | 35.0% | |
| AATTGGATGGTTATGGAATG+AGG | - | chr7_1:9205580-9205599 | None:intergenic | 35.0% | |
| TAGAGAAGACTCATCATCAA+TGG | + | chr7_1:9205922-9205941 | Msa1008660:intron | 35.0% | |
| CATTATTGCTTTCTTAGGGT+TGG | - | chr7_1:9206087-9206106 | None:intergenic | 35.0% | |
| ! | TCGCAAATTTAGGATCAAAC+TGG | - | chr7_1:9206179-9206198 | None:intergenic | 35.0% |
| ! | AGCAGGGCATCAAAAAAAAT+AGG | - | chr7_1:9206306-9206325 | None:intergenic | 35.0% |
| TAGTATATGCAGCAGAAACT+GGG | - | chr7_1:9206423-9206442 | None:intergenic | 35.0% | |
| ATAGTATATGCAGCAGAAAC+TGG | - | chr7_1:9206424-9206443 | None:intergenic | 35.0% | |
| CAATAGGGTCTTGGAAAAAA+TGG | + | chr7_1:9206667-9206686 | Msa1008660:CDS | 35.0% | |
| TAGTGTAATCATAGGTGTCA+TGG | + | chr7_1:9206819-9206838 | Msa1008660:intron | 35.0% | |
| GAACAAAAAGTGACTGTGAA+AGG | + | chr7_1:9206934-9206953 | Msa1008660:CDS | 35.0% | |
| ACAGTGTCAAAAACATCTTG+TGG | - | chr7_1:9206970-9206989 | None:intergenic | 35.0% | |
| TTTGACACTGTTTCCAAAAC+TGG | + | chr7_1:9206979-9206998 | Msa1008660:CDS | 35.0% | |
| CTGGAAAGAAAACTGAATTC+TGG | + | chr7_1:9206998-9207017 | Msa1008660:CDS | 35.0% | |
| AAAGAAAACTGAATTCTGGG+TGG | + | chr7_1:9207002-9207021 | Msa1008660:CDS | 35.0% | |
| ! | TCAATGTAATGTGTTACTGG+TGG | + | chr7_1:9207278-9207297 | Msa1008660:three_prime_UTR | 35.0% |
| ACTCATAACCATGTCTTCTG+AGG | + | chr7_1:9205641-9205660 | Msa1008660:exon | 40.0% | |
| ATTAAGCACCTCAGAAGACA+TGG | - | chr7_1:9205652-9205671 | None:intergenic | 40.0% | |
| TCTGACAGAATAGTCATGTG+TGG | - | chr7_1:9206279-9206298 | None:intergenic | 40.0% | |
| AGTATATGCAGCAGAAACTG+GGG | - | chr7_1:9206422-9206441 | None:intergenic | 40.0% | |
| CAGTCTGCAATGATCACAAT+GGG | - | chr7_1:9206601-9206620 | None:intergenic | 40.0% | |
| ACAGTCTGCAATGATCACAA+TGG | - | chr7_1:9206602-9206621 | None:intergenic | 40.0% | |
| AGGGTCTTGGAAAAAATGGA+AGG | + | chr7_1:9206671-9206690 | Msa1008660:CDS | 40.0% | |
| ! | TGTAATCATAGGTGTCATGG+TGG | + | chr7_1:9206822-9206841 | Msa1008660:intron | 40.0% |
| !!! | GTTTCTGTTGGCTTGTTTTC+AGG | - | chr7_1:9207030-9207049 | None:intergenic | 40.0% |
| !! | GCTTCTGAAGACTTGTTTTC+AGG | - | chr7_1:9207069-9207088 | None:intergenic | 40.0% |
| !! | GTTTCAGATGGCTTGTTAGT+AGG | - | chr7_1:9207114-9207133 | None:intergenic | 40.0% |
| ! | TGAGTCTTATGCAGCAATAG+TGG | - | chr7_1:9207184-9207203 | None:intergenic | 40.0% |
| ATTGCTGCATAAGACTCATG+TGG | + | chr7_1:9207186-9207205 | Msa1008660:exon | 40.0% | |
| ! | ATGTAATGTGTTACTGGTGG+TGG | + | chr7_1:9207281-9207300 | Msa1008660:three_prime_UTR | 40.0% |
| ACTCATAACCATGTCTTCTG+AGG | + | chr7_1:9205641-9205660 | Msa1008660:exon | 40.0% | |
| ATTAAGCACCTCAGAAGACA+TGG | - | chr7_1:9205652-9205671 | None:intergenic | 40.0% | |
| TCTGACAGAATAGTCATGTG+TGG | - | chr7_1:9206279-9206298 | None:intergenic | 40.0% | |
| AGTATATGCAGCAGAAACTG+GGG | - | chr7_1:9206422-9206441 | None:intergenic | 40.0% | |
| CAGTCTGCAATGATCACAAT+GGG | - | chr7_1:9206601-9206620 | None:intergenic | 40.0% | |
| ACAGTCTGCAATGATCACAA+TGG | - | chr7_1:9206602-9206621 | None:intergenic | 40.0% | |
| AGGGTCTTGGAAAAAATGGA+AGG | + | chr7_1:9206671-9206690 | Msa1008660:CDS | 40.0% | |
| ! | TGTAATCATAGGTGTCATGG+TGG | + | chr7_1:9206822-9206841 | Msa1008660:intron | 40.0% |
| !!! | GTTTCTGTTGGCTTGTTTTC+AGG | - | chr7_1:9207030-9207049 | None:intergenic | 40.0% |
| !! | GCTTCTGAAGACTTGTTTTC+AGG | - | chr7_1:9207069-9207088 | None:intergenic | 40.0% |
| !! | GTTTCAGATGGCTTGTTAGT+AGG | - | chr7_1:9207114-9207133 | None:intergenic | 40.0% |
| ! | TGAGTCTTATGCAGCAATAG+TGG | - | chr7_1:9207184-9207203 | None:intergenic | 40.0% |
| ATTGCTGCATAAGACTCATG+TGG | + | chr7_1:9207186-9207205 | Msa1008660:exon | 40.0% | |
| ! | ATGTAATGTGTTACTGGTGG+TGG | + | chr7_1:9207281-9207300 | Msa1008660:three_prime_UTR | 40.0% |
| TGGAATGAGGGTTGTGGTAA+TGG | - | chr7_1:9205567-9205586 | None:intergenic | 45.0% | |
| TGGTTATGGAATGAGGGTTG+TGG | - | chr7_1:9205573-9205592 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGTGTC+CGG | + | chr7_1:9206388-9206407 | Msa1008660:intron | 45.0% |
| !! | GTGTTCTGGAGCAGTCAATA+GGG | + | chr7_1:9206652-9206671 | Msa1008660:CDS | 45.0% |
| TATTATCTACGTCGGTGTGC+TGG | - | chr7_1:9206778-9206797 | None:intergenic | 45.0% | |
| GCCAACAGAAACTACAACTG+AGG | + | chr7_1:9207038-9207057 | Msa1008660:CDS | 45.0% | |
| GCCTCAGTTGTAGTTTCTGT+TGG | - | chr7_1:9207042-9207061 | None:intergenic | 45.0% | |
| ! | GCTTGTTAGTAGGCTCAACA+GGG | - | chr7_1:9207104-9207123 | None:intergenic | 45.0% |
| ACAACTGTGGCAGTTTCAGA+TGG | - | chr7_1:9207126-9207145 | None:intergenic | 45.0% | |
| AGGCTCAATAGAGACAACTG+TGG | - | chr7_1:9207139-9207158 | None:intergenic | 45.0% | |
| ! | GTTTCAGAAGGCTTGTTCTC+AGG | - | chr7_1:9207159-9207178 | None:intergenic | 45.0% |
| GCAATAGTGGCAGTTTCAGA+AGG | - | chr7_1:9207171-9207190 | None:intergenic | 45.0% | |
| TGGAATGAGGGTTGTGGTAA+TGG | - | chr7_1:9205567-9205586 | None:intergenic | 45.0% | |
| TGGTTATGGAATGAGGGTTG+TGG | - | chr7_1:9205573-9205592 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGTGTC+CGG | + | chr7_1:9206388-9206407 | Msa1008660:intron | 45.0% |
| !! | GTGTTCTGGAGCAGTCAATA+GGG | + | chr7_1:9206652-9206671 | Msa1008660:CDS | 45.0% |
| TATTATCTACGTCGGTGTGC+TGG | - | chr7_1:9206778-9206797 | None:intergenic | 45.0% | |
| GCCAACAGAAACTACAACTG+AGG | + | chr7_1:9207038-9207057 | Msa1008660:CDS | 45.0% | |
| GCCTCAGTTGTAGTTTCTGT+TGG | - | chr7_1:9207042-9207061 | None:intergenic | 45.0% | |
| ! | GCTTGTTAGTAGGCTCAACA+GGG | - | chr7_1:9207104-9207123 | None:intergenic | 45.0% |
| ACAACTGTGGCAGTTTCAGA+TGG | - | chr7_1:9207126-9207145 | None:intergenic | 45.0% | |
| AGGCTCAATAGAGACAACTG+TGG | - | chr7_1:9207139-9207158 | None:intergenic | 45.0% | |
| ! | GTTTCAGAAGGCTTGTTCTC+AGG | - | chr7_1:9207159-9207178 | None:intergenic | 45.0% |
| GCAATAGTGGCAGTTTCAGA+AGG | - | chr7_1:9207171-9207190 | None:intergenic | 45.0% | |
| !!! | GTATTTTTTATTTTATTTTT+TGG | + | chr7_1:9205739-9205758 | Msa1008660:intron | 5.0% |
| !!! | AATTGAATTTAATTTAAAAA+TGG | - | chr7_1:9206523-9206542 | None:intergenic | 5.0% |
| !!! | GTATTTTTTATTTTATTTTT+TGG | + | chr7_1:9205739-9205758 | Msa1008660:intron | 5.0% |
| !!! | AATTGAATTTAATTTAAAAA+TGG | - | chr7_1:9206523-9206542 | None:intergenic | 5.0% |
| !! | TGAGGGTTGTGGTAATGGAG+TGG | - | chr7_1:9205562-9205581 | None:intergenic | 50.0% |
| ! | GGTGAATAAGTGAGGTGTCC+GGG | + | chr7_1:9206389-9206408 | Msa1008660:intron | 50.0% |
| ! | GTGAATAAGTGAGGTGTCCG+GGG | + | chr7_1:9206390-9206409 | Msa1008660:intron | 50.0% |
| ! | ATGTCATGCTCAGGGTGTTC+TGG | + | chr7_1:9206638-9206657 | Msa1008660:CDS | 50.0% |
| !! | GGTGTTCTGGAGCAGTCAAT+AGG | + | chr7_1:9206651-9206670 | Msa1008660:CDS | 50.0% |
| TGGAGCAGTCAATAGGGTCT+TGG | + | chr7_1:9206658-9206677 | Msa1008660:CDS | 50.0% | |
| AAACACGGACACAGACACGA+CGG | + | chr7_1:9206747-9206766 | Msa1008660:intron | 50.0% | |
| ! | CATAGGTGTCATGGTGGTGT+CGG | + | chr7_1:9206828-9206847 | Msa1008660:intron | 50.0% |
| !! | GGCTTGTTAGTAGGCTCAAC+AGG | - | chr7_1:9207105-9207124 | None:intergenic | 50.0% |
| !! | TGAGGGTTGTGGTAATGGAG+TGG | - | chr7_1:9205562-9205581 | None:intergenic | 50.0% |
| ! | GGTGAATAAGTGAGGTGTCC+GGG | + | chr7_1:9206389-9206408 | Msa1008660:intron | 50.0% |
| ! | GTGAATAAGTGAGGTGTCCG+GGG | + | chr7_1:9206390-9206409 | Msa1008660:intron | 50.0% |
| ! | ATGTCATGCTCAGGGTGTTC+TGG | + | chr7_1:9206638-9206657 | Msa1008660:CDS | 50.0% |
| !! | GGTGTTCTGGAGCAGTCAAT+AGG | + | chr7_1:9206651-9206670 | Msa1008660:CDS | 50.0% |
| TGGAGCAGTCAATAGGGTCT+TGG | + | chr7_1:9206658-9206677 | Msa1008660:CDS | 50.0% | |
| AAACACGGACACAGACACGA+CGG | + | chr7_1:9206747-9206766 | Msa1008660:intron | 50.0% | |
| ! | CATAGGTGTCATGGTGGTGT+CGG | + | chr7_1:9206828-9206847 | Msa1008660:intron | 50.0% |
| !! | GGCTTGTTAGTAGGCTCAAC+AGG | - | chr7_1:9207105-9207124 | None:intergenic | 50.0% |
| AGAAACTGGGGTTCGAACCC+CGG | - | chr7_1:9206410-9206429 | None:intergenic | 55.0% | |
| AACACGGACACAGACACGAC+GGG | + | chr7_1:9206748-9206767 | Msa1008660:intron | 55.0% | |
| AGAAACTGGGGTTCGAACCC+CGG | - | chr7_1:9206410-9206429 | None:intergenic | 55.0% | |
| AACACGGACACAGACACGAC+GGG | + | chr7_1:9206748-9206767 | Msa1008660:intron | 55.0% | |
| ACACGGACACAGACACGACG+GGG | + | chr7_1:9206749-9206768 | Msa1008660:intron | 60.0% | |
| ACACGGACACAGACACGACG+GGG | + | chr7_1:9206749-9206768 | Msa1008660:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 9205557 | 9207439 | 9205557 | ID=Msa1008660;Name=Msa1008660 |
| chr7_1 | mRNA | 9205557 | 9207439 | 9205557 | ID=Msa1008660-mRNA-1;Parent=Msa1008660;Name=Msa1008660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|3|242|126 |
| chr7_1 | exon | 9205557 | 9205662 | 9205557 | ID=Msa1008660-mRNA-1:exon:2635;Parent=Msa1008660-mRNA-1 |
| chr7_1 | exon | 9206617 | 9206692 | 9206617 | ID=Msa1008660-mRNA-1:exon:2636;Parent=Msa1008660-mRNA-1 |
| chr7_1 | exon | 9206905 | 9207439 | 9206905 | ID=Msa1008660-mRNA-1:exon:2637;Parent=Msa1008660-mRNA-1 |
| chr7_1 | five_prime_UTR | 9205557 | 9205650 | 9205557 | ID=Msa1008660-mRNA-1:five_prime_utr;Parent=Msa1008660-mRNA-1 |
| chr7_1 | CDS | 9205651 | 9205662 | 9205651 | ID=Msa1008660-mRNA-1:cds;Parent=Msa1008660-mRNA-1 |
| chr7_1 | CDS | 9206617 | 9206692 | 9206617 | ID=Msa1008660-mRNA-1:cds;Parent=Msa1008660-mRNA-1 |
| chr7_1 | CDS | 9206905 | 9207197 | 9206905 | ID=Msa1008660-mRNA-1:cds;Parent=Msa1008660-mRNA-1 |
| chr7_1 | three_prime_UTR | 9207198 | 9207439 | 9207198 | ID=Msa1008660-mRNA-1:three_prime_utr;Parent=Msa1008660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
