Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012180 | AFK48403.1 | 68.831 | 77 | 21 | 2 | 14 | 87 | 58 | 134 | 1.75e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012180 | I3T7B1 | 68.831 | 77 | 21 | 2 | 14 | 87 | 58 | 134 | 8.36e-22 | 93.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa1012180 | 0.804602 | 1.996481e-49 | -8.615850e-47 |
| Msa0213360 | Msa1012180 | 0.807657 | 4.542266e-50 | -8.615850e-47 |
| Msa0988010 | Msa1012180 | 0.837543 | 4.885793e-57 | -8.615850e-47 |
| Msa1008660 | Msa1012180 | 0.833645 | 4.735667e-56 | -8.615850e-47 |
| Msa1008690 | Msa1012180 | 0.833227 | 6.018699e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012180 | MtrunA17_Chr8g0337441 | 61.176 | 85 | 30 | 2 | 14 | 95 | 58 | 142 | 3.98e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012180 | AT2G32600.1 | 54.878 | 82 | 34 | 2 | 14 | 92 | 58 | 139 | 4.68e-19 | 80.1 |
Find 34 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATAAGAGGAATGTTAAT+TGG | 0.286633 | 7_1:+17244069 | Msa1012180:CDS |
| AGAGATCTTTGCTTGGTATC+AGG | 0.323464 | 7_1:-17244240 | None:intergenic |
| GGTATTAAGTAAGTTCTATA+AGG | 0.327374 | 7_1:+17246822 | Msa1012180:three_prime_UTR |
| AATGTTAATTGGAAGAAAAC+TGG | 0.366636 | 7_1:+17244080 | Msa1012180:CDS |
| TTATGGTTGTAGTTAAGATT+TGG | 0.367910 | 7_1:+17244190 | Msa1012180:intron |
| GCAGCACACTTAGCAAGATT+TGG | 0.369330 | 7_1:-17244011 | None:intergenic |
| CTCCGTTCTAGTTTCTTAAG+AGG | 0.374795 | 7_1:+17246751 | Msa1012180:three_prime_UTR |
| TATTGTAGGTTTGCTTTACT+AGG | 0.380164 | 7_1:+17246543 | Msa1012180:intron |
| GTTTGCTTTACTAGGATGTC+AGG | 0.381932 | 7_1:+17246551 | Msa1012180:CDS |
| GCTTTCCCTGTGTACGAGTA+AGG | 0.429313 | 7_1:-17243979 | None:intergenic |
| CTCAACCTCCGTCTCATAAG+AGG | 0.446436 | 7_1:+17244057 | Msa1012180:CDS |
| AACTATTGATGACTTAGGCT+TGG | 0.462072 | 7_1:-17246799 | None:intergenic |
| TAGTTAAGATTTGGAGGCAT+GGG | 0.470200 | 7_1:+17244199 | Msa1012180:intron |
| CAATCTTTGAATCATATTTG+AGG | 0.477529 | 7_1:-17246716 | None:intergenic |
| TGGTTGTAGTTAAGATTTGG+AGG | 0.494182 | 7_1:+17244193 | Msa1012180:intron |
| AAATTTCAGAAGATTAAGAA+TGG | 0.497382 | 7_1:+17246590 | Msa1012180:CDS |
| ATACCAACTATTGATGACTT+AGG | 0.521181 | 7_1:-17246804 | None:intergenic |
| GTAGTTAAGATTTGGAGGCA+TGG | 0.523345 | 7_1:+17244198 | Msa1012180:intron |
| GAGCACAATGAATCCACAAC+AGG | 0.535727 | 7_1:+17246614 | Msa1012180:CDS |
| AAGCCTAAGTCATCAATAGT+TGG | 0.541811 | 7_1:+17246801 | Msa1012180:three_prime_UTR |
| CTTTGAATCATATTTGAGGC+CGG | 0.545057 | 7_1:-17246712 | None:intergenic |
| TTTGCTTTACTAGGATGTCA+GGG | 0.545993 | 7_1:+17246552 | Msa1012180:CDS |
| AAGGAACCTTACTCGTACAC+AGG | 0.548430 | 7_1:+17243973 | Msa1012180:CDS |
| GTTCTATAAGGATAAGAGCT+TGG | 0.551288 | 7_1:+17246834 | Msa1012180:three_prime_UTR |
| TTAACATTCCTCTTATGAGA+CGG | 0.582419 | 7_1:-17244065 | None:intergenic |
| TTAAGAAACTAGAACGGAGA+AGG | 0.582678 | 7_1:-17246747 | None:intergenic |
| TACAAACTAACAAAGCTACA+TGG | 0.599307 | 7_1:-17246859 | None:intergenic |
| CTCACTCTTCACAACAACGA+AGG | 0.627623 | 7_1:+17243954 | Msa1012180:CDS |
| CTCCTCTTAAGAAACTAGAA+CGG | 0.632518 | 7_1:-17246753 | None:intergenic |
| ACATTCCTCTTATGAGACGG+AGG | 0.649011 | 7_1:-17244062 | None:intergenic |
| ACAACCGCTGAAGTGTGTAC+CGG | 0.651271 | 7_1:+17246693 | Msa1012180:three_prime_UTR |
| ATCTTGTAGACGAGTGACAG+TGG | 0.658091 | 7_1:+17246645 | Msa1012180:exon |
| AGGAACCTTACTCGTACACA+GGG | 0.668638 | 7_1:+17243974 | Msa1012180:CDS |
| GAGGCCGGTACACACTTCAG+CGG | 0.680988 | 7_1:-17246697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTTTTGTGT+TGG | + | chr7_1:17244167-17244186 | Msa1012180:intron | 10.0% |
| !! | AAGTATATTATAATTCTTAA+TGG | - | chr7_1:17246472-17246491 | None:intergenic | 10.0% |
| !! | AATAATTAAACAAGAATGAA+GGG | - | chr7_1:17244121-17244140 | None:intergenic | 15.0% |
| !! | AAATAATTAAACAAGAATGA+AGG | - | chr7_1:17244122-17244141 | None:intergenic | 15.0% |
| !!! | AAATCAAGTCAAAATATTTT+TGG | + | chr7_1:17244550-17244569 | Msa1012180:intron | 15.0% |
| !!! | TTTTATCATTTTTATTCTTG+AGG | + | chr7_1:17245322-17245341 | Msa1012180:intron | 15.0% |
| !!! | AAACATTTTTTAACAATTTC+TGG | + | chr7_1:17245429-17245448 | Msa1012180:intron | 15.0% |
| !!! | AACATTTTTTAACAATTTCT+GGG | + | chr7_1:17245430-17245449 | Msa1012180:intron | 15.0% |
| !! | GAAATTGTAATTATTATTGT+AGG | + | chr7_1:17246529-17246548 | Msa1012180:intron | 15.0% |
| !!! | TTTTTTTTTTGTGTTGGTTA+TGG | + | chr7_1:17244173-17244192 | Msa1012180:intron | 20.0% |
| !!! | TATATGTGAAATTGTTTTTG+TGG | + | chr7_1:17244371-17244390 | Msa1012180:intron | 20.0% |
| !! | ATTATAATGAATCAGTGATT+AGG | + | chr7_1:17244410-17244429 | Msa1012180:intron | 20.0% |
| !! | TTATAATGAATCAGTGATTA+GGG | + | chr7_1:17244411-17244430 | Msa1012180:intron | 20.0% |
| !! | ATTTAATAGGACTTAAACTT+GGG | + | chr7_1:17244434-17244453 | Msa1012180:intron | 20.0% |
| !! | TGCAATCAATTTGTAAAATT+AGG | + | chr7_1:17244851-17244870 | Msa1012180:intron | 20.0% |
| !! | ATTTCAGCATAAATATAGAA+GGG | - | chr7_1:17245388-17245407 | None:intergenic | 20.0% |
| !! | AATAAAATATGATAGCAACA+AGG | - | chr7_1:17245644-17245663 | None:intergenic | 20.0% |
| !!! | TTGTTGCTATCATATTTTAT+TGG | + | chr7_1:17245643-17245662 | Msa1012180:intron | 20.0% |
| !!! | AGACATGATAAATCTTTTTT+TGG | + | chr7_1:17245767-17245786 | Msa1012180:intron | 20.0% |
| !!! | TCAAATGATAATGGTATAAT+AGG | - | chr7_1:17246088-17246107 | None:intergenic | 20.0% |
| !! | TATTATACCATTATCATTTG+AGG | + | chr7_1:17246087-17246106 | Msa1012180:intron | 20.0% |
| !! | ATTATACCATTATCATTTGA+GGG | + | chr7_1:17246088-17246107 | Msa1012180:intron | 20.0% |
| !!! | CAATTGCAAGTATTTTAATT+AGG | - | chr7_1:17246501-17246520 | None:intergenic | 20.0% |
| !! | AAATTTCAGAAGATTAAGAA+TGG | + | chr7_1:17246590-17246609 | Msa1012180:CDS | 20.0% |
| !! | AGAGTGAGATTTTTATGAAT+CGG | - | chr7_1:17243942-17243961 | None:intergenic | 25.0% |
| ! | AATGTTAATTGGAAGAAAAC+TGG | + | chr7_1:17244080-17244099 | Msa1012180:CDS | 25.0% |
| ! | TTATGGTTGTAGTTAAGATT+TGG | + | chr7_1:17244190-17244209 | Msa1012180:intron | 25.0% |
| !!! | ATCTTCTTTAAAGTTTGAAG+TGG | + | chr7_1:17244284-17244303 | Msa1012180:intron | 25.0% |
| ! | GATTTAATAGGACTTAAACT+TGG | + | chr7_1:17244433-17244452 | Msa1012180:intron | 25.0% |
| ! | TTGCAAATATTCATTTCACT+TGG | - | chr7_1:17244836-17244855 | None:intergenic | 25.0% |
| ! | AATCATTCAAAACAAAAGTG+AGG | - | chr7_1:17245067-17245086 | None:intergenic | 25.0% |
| ! | AACAAATATAAATAAGCCTG+TGG | - | chr7_1:17245170-17245189 | None:intergenic | 25.0% |
| !!! | TAATTGATATTGGTTCTTAC+TGG | + | chr7_1:17245213-17245232 | Msa1012180:intron | 25.0% |
| ! | GATTTCAGCATAAATATAGA+AGG | - | chr7_1:17245389-17245408 | None:intergenic | 25.0% |
| ! | AAATCATCCATAACAAGATT+GGG | + | chr7_1:17245404-17245423 | Msa1012180:intron | 25.0% |
| ! | CACTATAAACTTTGGATTAT+AGG | + | chr7_1:17245475-17245494 | Msa1012180:intron | 25.0% |
| ! | AAACTTTGGATTATAGGATA+CGG | + | chr7_1:17245481-17245500 | Msa1012180:intron | 25.0% |
| !!! | GGTTCTTTTATTTACACAAT+TGG | + | chr7_1:17245788-17245807 | Msa1012180:intron | 25.0% |
| ! | ATTTACACAATTGGATAACA+CGG | + | chr7_1:17245797-17245816 | Msa1012180:intron | 25.0% |
| !!! | ATGTTAAACCTACTTTTACA+TGG | + | chr7_1:17246221-17246240 | Msa1012180:intron | 25.0% |
| !!! | TTGTTGATGAGATTTCTTTT+AGG | + | chr7_1:17246257-17246276 | Msa1012180:intron | 25.0% |
| ! | TACAATAACAAAACACAACA+GGG | - | chr7_1:17246299-17246318 | None:intergenic | 25.0% |
| ! | CAATCTTTGAATCATATTTG+AGG | - | chr7_1:17246719-17246738 | None:intergenic | 25.0% |
| ! | GGTATTAAGTAAGTTCTATA+AGG | + | chr7_1:17246822-17246841 | Msa1012180:three_prime_UTR | 25.0% |
| TTAACATTCCTCTTATGAGA+CGG | - | chr7_1:17244068-17244087 | None:intergenic | 30.0% | |
| CTCATAAGAGGAATGTTAAT+TGG | + | chr7_1:17244069-17244088 | Msa1012180:CDS | 30.0% | |
| TCAGTGATTAGGGATTTAAT+AGG | + | chr7_1:17244421-17244440 | Msa1012180:intron | 30.0% | |
| ! | TTTGTTGCTTATAGCAGAAA+AGG | + | chr7_1:17244727-17244746 | Msa1012180:intron | 30.0% |
| ! | TTGTTGCTTATAGCAGAAAA+GGG | + | chr7_1:17244728-17244747 | Msa1012180:intron | 30.0% |
| TGAAGCTTGCATTAACTTTA+TGG | + | chr7_1:17245126-17245145 | Msa1012180:intron | 30.0% | |
| TGTCACTCACTAATTGATAT+TGG | + | chr7_1:17245203-17245222 | Msa1012180:intron | 30.0% | |
| ACTGGATAAATGAACACTAA+AGG | + | chr7_1:17245231-17245250 | Msa1012180:intron | 30.0% | |
| TGCTTGACTTAGATAATGAT+TGG | + | chr7_1:17245269-17245288 | Msa1012180:intron | 30.0% | |
| ACTACACCATATAAGCAAAT+CGG | - | chr7_1:17245361-17245380 | None:intergenic | 30.0% | |
| GAAATCATCCATAACAAGAT+TGG | + | chr7_1:17245403-17245422 | Msa1012180:intron | 30.0% | |
| ! | TGTTTTTCCCAATCTTGTTA+TGG | - | chr7_1:17245414-17245433 | None:intergenic | 30.0% |
| !!! | TGCTTCTTGTTTGTTTTTTG+TGG | + | chr7_1:17245539-17245558 | Msa1012180:intron | 30.0% |
| ! | TGTTGTTTAGTTAACATGTC+AGG | + | chr7_1:17245569-17245588 | Msa1012180:intron | 30.0% |
| !! | GCTTTTAAAGAGTTTCAAAG+AGG | + | chr7_1:17245848-17245867 | Msa1012180:intron | 30.0% |
| ATTAGTCCCTCAAATGATAA+TGG | - | chr7_1:17246097-17246116 | None:intergenic | 30.0% | |
| CTACAATAACAAAACACAAC+AGG | - | chr7_1:17246300-17246319 | None:intergenic | 30.0% | |
| !!! | CTGTTGTGTTTTGTTATTGT+AGG | + | chr7_1:17246298-17246317 | Msa1012180:intron | 30.0% |
| !!! | GTTTTGTTATTGTAGGATGT+AGG | + | chr7_1:17246305-17246324 | Msa1012180:intron | 30.0% |
| ! | TATTGTAGGTTTGCTTTACT+AGG | + | chr7_1:17246543-17246562 | Msa1012180:intron | 30.0% |
| ! | ATACCAACTATTGATGACTT+AGG | - | chr7_1:17246807-17246826 | None:intergenic | 30.0% |
| TACAAACTAACAAAGCTACA+TGG | - | chr7_1:17246862-17246881 | None:intergenic | 30.0% | |
| TGGTTGTAGTTAAGATTTGG+AGG | + | chr7_1:17244193-17244212 | Msa1012180:intron | 35.0% | |
| ! | TAGTTAAGATTTGGAGGCAT+GGG | + | chr7_1:17244199-17244218 | Msa1012180:intron | 35.0% |
| AAAAAGCAGAGATCTTTGCT+TGG | - | chr7_1:17244250-17244269 | None:intergenic | 35.0% | |
| !! | AGAGCTTAGTTTGTAGCTTA+TGG | + | chr7_1:17244471-17244490 | Msa1012180:intron | 35.0% |
| AGTTGTTACATAAGCTCTCT+AGG | - | chr7_1:17244605-17244624 | None:intergenic | 35.0% | |
| ! | ATAAGCTTTTCACCGAAACA+AGG | - | chr7_1:17244707-17244726 | None:intergenic | 35.0% |
| CTCTAGTGTGGTTAAATTTG+AGG | + | chr7_1:17244891-17244910 | Msa1012180:intron | 35.0% | |
| !! | TGTTTTGAATGATTCAACGC+AGG | + | chr7_1:17245073-17245092 | Msa1012180:intron | 35.0% |
| !! | GTTTTGAATGATTCAACGCA+GGG | + | chr7_1:17245074-17245093 | Msa1012180:intron | 35.0% |
| ! | TCTCTTCCGATTTGCTTATA+TGG | + | chr7_1:17245352-17245371 | Msa1012180:intron | 35.0% |
| !! | CAATTTCTGGGCAAATTTTG+TGG | + | chr7_1:17245442-17245461 | Msa1012180:intron | 35.0% |
| !! | GATGGAAGCACTATAAACTT+TGG | + | chr7_1:17245467-17245486 | Msa1012180:intron | 35.0% |
| TTTGGATTATAGGATACGGT+TGG | + | chr7_1:17245485-17245504 | Msa1012180:intron | 35.0% | |
| AACATGTCAGGAAGATTAAC+AGG | + | chr7_1:17245581-17245600 | Msa1012180:intron | 35.0% | |
| GCAATTGGAACATAATCATC+TGG | - | chr7_1:17245677-17245696 | None:intergenic | 35.0% | |
| TTGTTAAGTGAGTCATTAGC+AGG | + | chr7_1:17245903-17245922 | Msa1012180:intron | 35.0% | |
| ! | ACTTGGTAGTTTGATCTTCA+AGG | - | chr7_1:17246000-17246019 | None:intergenic | 35.0% |
| !! | ATAATAGGAAGTACCTTGCA+AGG | - | chr7_1:17246073-17246092 | None:intergenic | 35.0% |
| AAATATGACCGAGATGATAG+CGG | + | chr7_1:17246193-17246212 | Msa1012180:intron | 35.0% | |
| TTTGCTTTACTAGGATGTCA+GGG | + | chr7_1:17246552-17246571 | Msa1012180:CDS | 35.0% | |
| !! | AAGATTTTGATGACCTGTTG+TGG | - | chr7_1:17246630-17246649 | None:intergenic | 35.0% |
| ! | CTTTGAATCATATTTGAGGC+CGG | - | chr7_1:17246715-17246734 | None:intergenic | 35.0% |
| TTAAGAAACTAGAACGGAGA+AGG | - | chr7_1:17246750-17246769 | None:intergenic | 35.0% | |
| CTCCTCTTAAGAAACTAGAA+CGG | - | chr7_1:17246756-17246775 | None:intergenic | 35.0% | |
| ! | AACTATTGATGACTTAGGCT+TGG | - | chr7_1:17246802-17246821 | None:intergenic | 35.0% |
| AAGCCTAAGTCATCAATAGT+TGG | + | chr7_1:17246801-17246820 | Msa1012180:three_prime_UTR | 35.0% | |
| GTTCTATAAGGATAAGAGCT+TGG | + | chr7_1:17246834-17246853 | Msa1012180:three_prime_UTR | 35.0% | |
| GTAGTTAAGATTTGGAGGCA+TGG | + | chr7_1:17244198-17244217 | Msa1012180:intron | 40.0% | |
| AGAGATCTTTGCTTGGTATC+AGG | - | chr7_1:17244243-17244262 | None:intergenic | 40.0% | |
| !!! | GCAAAGATCTCTGCTTTTTC+AGG | + | chr7_1:17244251-17244270 | Msa1012180:CDS | 40.0% |
| ACTTAAACTTGGGCTGTGTT+TGG | + | chr7_1:17244444-17244463 | Msa1012180:intron | 40.0% | |
| TTGTTGTGAGAGTGAGACTT+AGG | + | chr7_1:17244681-17244700 | Msa1012180:intron | 40.0% | |
| ACTTCTCTTACTCTCTAGTG+TGG | + | chr7_1:17244879-17244898 | Msa1012180:intron | 40.0% | |
| ! | GCAAAATTGTCTTGCTGACT+TGG | + | chr7_1:17244925-17244944 | Msa1012180:intron | 40.0% |
| !!! | TGTCTTGCTGACTTGGTTTT+AGG | + | chr7_1:17244932-17244951 | Msa1012180:intron | 40.0% |
| !! | GTAGACCTACTTTCAAGTTG+AGG | + | chr7_1:17244964-17244983 | Msa1012180:intron | 40.0% |
| CACATCCTCAACTTGAAAGT+AGG | - | chr7_1:17244972-17244991 | None:intergenic | 40.0% | |
| ! | CTTTGTTGTGAATAAGCCAC+AGG | + | chr7_1:17245151-17245170 | Msa1012180:intron | 40.0% |
| ! | TTTCTGGGCAAATTTTGTGG+CGG | + | chr7_1:17245445-17245464 | Msa1012180:intron | 40.0% |
| TCCAATTGCATGCTTAGCTT+AGG | + | chr7_1:17245688-17245707 | Msa1012180:intron | 40.0% | |
| CATGCTTAGCTTAGGCTATT+TGG | + | chr7_1:17245696-17245715 | Msa1012180:intron | 40.0% | |
| CCTGTCATCATTGTGTAAAC+TGG | - | chr7_1:17245827-17245846 | None:intergenic | 40.0% | |
| CCAGTTTACACAATGATGAC+AGG | + | chr7_1:17245824-17245843 | Msa1012180:intron | 40.0% | |
| TAAGTGAGTCATTAGCAGGA+AGG | + | chr7_1:17245907-17245926 | Msa1012180:intron | 40.0% | |
| AAGTGAGTCATTAGCAGGAA+GGG | + | chr7_1:17245908-17245927 | Msa1012180:intron | 40.0% | |
| ! | CACATGAAGTGCTTGAAACT+TGG | - | chr7_1:17246017-17246036 | None:intergenic | 40.0% |
| AATATGACCGAGATGATAGC+GGG | + | chr7_1:17246194-17246213 | Msa1012180:intron | 40.0% | |
| ! | CATTTTTCCCGCTATCATCT+CGG | - | chr7_1:17246204-17246223 | None:intergenic | 40.0% |
| ! | TTGGGTGTTGTGTAAACCAA+AGG | + | chr7_1:17246351-17246370 | Msa1012180:intron | 40.0% |
| CTTTCTTGTACAACACAGTC+AGG | - | chr7_1:17246379-17246398 | None:intergenic | 40.0% | |
| GTTTGCTTTACTAGGATGTC+AGG | + | chr7_1:17246551-17246570 | Msa1012180:CDS | 40.0% | |
| !! | CTCCGTTCTAGTTTCTTAAG+AGG | + | chr7_1:17246751-17246770 | Msa1012180:three_prime_UTR | 40.0% |
| CTCACTCTTCACAACAACGA+AGG | + | chr7_1:17243954-17243973 | Msa1012180:CDS | 45.0% | |
| AAGGAACCTTACTCGTACAC+AGG | + | chr7_1:17243973-17243992 | Msa1012180:CDS | 45.0% | |
| AGGAACCTTACTCGTACACA+GGG | + | chr7_1:17243974-17243993 | Msa1012180:CDS | 45.0% | |
| GCAGCACACTTAGCAAGATT+TGG | - | chr7_1:17244014-17244033 | None:intergenic | 45.0% | |
| ACATTCCTCTTATGAGACGG+AGG | - | chr7_1:17244065-17244084 | None:intergenic | 45.0% | |
| !! | GTGAGACTTAGGCCTTGTTT+CGG | + | chr7_1:17244692-17244711 | Msa1012180:intron | 45.0% |
| TTCACTTGGACACGTCACAA+TGG | - | chr7_1:17244822-17244841 | None:intergenic | 45.0% | |
| GCCTAAGCTAAGCATGCAAT+TGG | - | chr7_1:17245692-17245711 | None:intergenic | 45.0% | |
| GCTTAGCTTAGGCTATTTGG+AGG | + | chr7_1:17245699-17245718 | Msa1012180:intron | 45.0% | |
| TTGCAAGGTCTGAAGAGAAG+TGG | - | chr7_1:17246058-17246077 | None:intergenic | 45.0% | |
| ACTTCTCTTCAGACCTTGCA+AGG | + | chr7_1:17246057-17246076 | Msa1012180:intron | 45.0% | |
| CGCTTACGCCATGTAAAAGT+AGG | - | chr7_1:17246232-17246251 | None:intergenic | 45.0% | |
| ! | TGTAGGATGTAGGCTTTGTG+TGG | + | chr7_1:17246315-17246334 | Msa1012180:intron | 45.0% |
| TGTGGTGTGTGTTTCCTGTT+GGG | + | chr7_1:17246333-17246352 | Msa1012180:intron | 45.0% | |
| TGGTTTACACAACACCCAAC+AGG | - | chr7_1:17246350-17246369 | None:intergenic | 45.0% | |
| ACAACACAGTCAGGATCCTT+TGG | - | chr7_1:17246370-17246389 | None:intergenic | 45.0% | |
| GAGCACAATGAATCCACAAC+AGG | + | chr7_1:17246614-17246633 | Msa1012180:CDS | 45.0% | |
| ATCTTGTAGACGAGTGACAG+TGG | + | chr7_1:17246645-17246664 | Msa1012180:exon | 45.0% | |
| GCTTTCCCTGTGTACGAGTA+AGG | - | chr7_1:17243982-17244001 | None:intergenic | 50.0% | |
| CTCAACCTCCGTCTCATAAG+AGG | + | chr7_1:17244057-17244076 | Msa1012180:CDS | 50.0% | |
| !! | TGGGCAAATTTTGTGGCGGA+TGG | + | chr7_1:17245449-17245468 | Msa1012180:intron | 50.0% |
| GTGTGGTGTGTGTTTCCTGT+TGG | + | chr7_1:17246332-17246351 | Msa1012180:intron | 50.0% | |
| ACAACCGCTGAAGTGTGTAC+CGG | + | chr7_1:17246693-17246712 | Msa1012180:three_prime_UTR | 50.0% | |
| GAGGCCGGTACACACTTCAG+CGG | - | chr7_1:17246700-17246719 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 17243915 | 17246922 | 17243915 | ID=Msa1012180;Name=Msa1012180 |
| chr7_1 | mRNA | 17243915 | 17246922 | 17243915 | ID=Msa1012180-mRNA-1;Parent=Msa1012180;Name=Msa1012180-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0.33|0.33|1|1|3|261|122 |
| chr7_1 | exon | 17243915 | 17244101 | 17243915 | ID=Msa1012180-mRNA-1:exon:4319;Parent=Msa1012180-mRNA-1 |
| chr7_1 | exon | 17244202 | 17244272 | 17244202 | ID=Msa1012180-mRNA-1:exon:4320;Parent=Msa1012180-mRNA-1 |
| chr7_1 | exon | 17246551 | 17246922 | 17246551 | ID=Msa1012180-mRNA-1:exon:4321;Parent=Msa1012180-mRNA-1 |
| chr7_1 | CDS | 17243915 | 17244101 | 17243915 | ID=Msa1012180-mRNA-1:cds;Parent=Msa1012180-mRNA-1 |
| chr7_1 | CDS | 17244202 | 17244272 | 17244202 | ID=Msa1012180-mRNA-1:cds;Parent=Msa1012180-mRNA-1 |
| chr7_1 | CDS | 17246551 | 17246661 | 17246551 | ID=Msa1012180-mRNA-1:cds;Parent=Msa1012180-mRNA-1 |
| chr7_1 | three_prime_UTR | 17246662 | 17246922 | 17246662 | ID=Msa1012180-mRNA-1:three_prime_utr;Parent=Msa1012180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
