Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008690 | XP_003621459.2 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.51e-78 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008690 | sp|O82089|CCH_ARATH | 80.303 | 66 | 13 | 0 | 3 | 68 | 2 | 67 | 1.22e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008690 | B7FJ81 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 1.20e-78 | 237 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1008660 | Msa1008690 | 0.981510 | 9.155469e-153 | -8.615850e-47 |
| Msa1008690 | Msa1012180 | 0.833227 | 6.018699e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008690 | MtrunA17_Chr7g0218981 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.31e-82 | 237 |
| Msa1008690 | MtrunA17_Chr1g0198341 | 66.667 | 81 | 25 | 2 | 1 | 81 | 1 | 79 | 3.69e-30 | 103 |
| Msa1008690 | MtrunA17_Chr4g0050571 | 47.692 | 65 | 33 | 1 | 4 | 68 | 101 | 164 | 1.43e-16 | 71.6 |
| Msa1008690 | MtrunA17_Chr1g0189221 | 37.349 | 83 | 51 | 1 | 1 | 83 | 50 | 131 | 8.19e-15 | 67.0 |
| Msa1008690 | MtrunA17_Chr1g0182101 | 44.776 | 67 | 36 | 1 | 2 | 68 | 183 | 248 | 1.04e-14 | 68.2 |
| Msa1008690 | MtrunA17_Chr1g0192131 | 41.667 | 72 | 41 | 1 | 1 | 71 | 12 | 83 | 1.24e-14 | 68.9 |
| Msa1008690 | MtrunA17_Chr8g0382721 | 50.000 | 64 | 32 | 0 | 5 | 68 | 30 | 93 | 1.80e-14 | 65.5 |
| Msa1008690 | MtrunA17_Chr3g0145621 | 48.485 | 66 | 33 | 1 | 4 | 68 | 26 | 91 | 2.06e-14 | 65.5 |
| Msa1008690 | MtrunA17_Chr7g0263491 | 40.000 | 85 | 44 | 2 | 2 | 86 | 207 | 284 | 6.28e-14 | 66.2 |
| Msa1008690 | MtrunA17_Chr2g0325601 | 44.615 | 65 | 36 | 0 | 8 | 72 | 6 | 70 | 6.31e-14 | 63.9 |
| Msa1008690 | MtrunA17_Chr3g0115421 | 44.444 | 63 | 35 | 0 | 6 | 68 | 28 | 90 | 6.77e-14 | 63.9 |
| Msa1008690 | MtrunA17_Chr4g0030661 | 46.154 | 65 | 34 | 1 | 4 | 68 | 212 | 275 | 8.94e-14 | 65.9 |
| Msa1008690 | MtrunA17_Chr3g0124411 | 47.692 | 65 | 34 | 0 | 4 | 68 | 30 | 94 | 1.42e-13 | 63.2 |
| Msa1008690 | MtrunA17_Chr7g0269081 | 39.706 | 68 | 41 | 0 | 1 | 68 | 19 | 86 | 3.15e-13 | 64.7 |
| Msa1008690 | MtrunA17_Chr1g0160201 | 43.077 | 65 | 37 | 0 | 4 | 68 | 25 | 89 | 4.61e-13 | 62.0 |
| Msa1008690 | MtrunA17_Chr2g0287751 | 42.424 | 66 | 38 | 0 | 7 | 72 | 13 | 78 | 1.12e-12 | 63.5 |
| Msa1008690 | MtrunA17_Chr3g0111541 | 35.484 | 93 | 60 | 0 | 1 | 93 | 9 | 101 | 1.88e-12 | 61.6 |
| Msa1008690 | MtrunA17_Chr0c22g0493881 | 40.909 | 66 | 39 | 0 | 7 | 72 | 13 | 78 | 4.58e-12 | 61.6 |
| Msa1008690 | MtrunA17_Chr7g0251491 | 48.485 | 66 | 33 | 1 | 4 | 68 | 48 | 113 | 4.96e-12 | 59.7 |
| Msa1008690 | MtrunA17_Chr4g0065621 | 40.909 | 66 | 39 | 0 | 7 | 72 | 13 | 78 | 6.01e-12 | 61.2 |
| Msa1008690 | MtrunA17_Chr5g0422891 | 36.923 | 65 | 41 | 0 | 4 | 68 | 25 | 89 | 9.47e-12 | 58.5 |
| Msa1008690 | MtrunA17_Chr1g0208301 | 40.000 | 65 | 39 | 0 | 4 | 68 | 13 | 77 | 1.32e-11 | 60.1 |
| Msa1008690 | MtrunA17_Chr5g0405811 | 43.939 | 66 | 36 | 1 | 4 | 68 | 29 | 94 | 1.73e-11 | 57.8 |
| Msa1008690 | MtrunA17_Chr8g0390711 | 38.462 | 65 | 39 | 1 | 4 | 68 | 66 | 129 | 1.98e-11 | 57.4 |
| Msa1008690 | MtrunA17_Chr4g0036931 | 45.455 | 66 | 35 | 1 | 4 | 68 | 28 | 93 | 2.10e-11 | 57.8 |
| Msa1008690 | MtrunA17_Chr5g0407821 | 37.363 | 91 | 55 | 1 | 4 | 92 | 23 | 113 | 2.27e-11 | 57.4 |
| Msa1008690 | MtrunA17_Chr7g0272571 | 37.500 | 72 | 43 | 1 | 4 | 75 | 33 | 102 | 2.55e-11 | 59.3 |
| Msa1008690 | MtrunA17_Chr6g0485081 | 37.143 | 70 | 43 | 1 | 4 | 73 | 65 | 133 | 2.62e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008690 | AT3G56240.3 | 80.303 | 66 | 13 | 0 | 3 | 68 | 2 | 67 | 1.24e-33 | 114 |
| Msa1008690 | AT3G56240.1 | 80.303 | 66 | 13 | 0 | 3 | 68 | 2 | 67 | 1.24e-33 | 114 |
| Msa1008690 | AT1G66240.1 | 74.242 | 66 | 17 | 0 | 3 | 68 | 32 | 97 | 1.93e-31 | 108 |
| Msa1008690 | AT3G56240.2 | 82.456 | 57 | 10 | 0 | 12 | 68 | 1 | 57 | 1.46e-29 | 103 |
| Msa1008690 | AT1G66240.2 | 75.439 | 57 | 14 | 0 | 12 | 68 | 1 | 57 | 9.98e-27 | 94.7 |
| Msa1008690 | AT2G37390.2 | 45.588 | 68 | 36 | 1 | 4 | 71 | 180 | 246 | 9.63e-17 | 73.9 |
| Msa1008690 | AT2G37390.1 | 45.588 | 68 | 36 | 1 | 4 | 71 | 181 | 247 | 9.65e-17 | 73.9 |
| Msa1008690 | AT1G06330.1 | 43.478 | 69 | 39 | 0 | 5 | 73 | 3 | 71 | 3.81e-15 | 67.8 |
| Msa1008690 | AT2G18196.1 | 33.333 | 90 | 60 | 0 | 1 | 90 | 43 | 132 | 1.14e-14 | 67.0 |
| Msa1008690 | AT3G53530.1 | 44.444 | 72 | 37 | 2 | 2 | 71 | 166 | 236 | 3.21e-14 | 67.0 |
| Msa1008690 | AT5G02600.2 | 44.928 | 69 | 37 | 1 | 2 | 70 | 248 | 315 | 4.19e-14 | 67.4 |
| Msa1008690 | AT5G02600.1 | 44.928 | 69 | 37 | 1 | 2 | 70 | 248 | 315 | 4.19e-14 | 67.4 |
| Msa1008690 | AT5G27690.1 | 39.706 | 68 | 41 | 0 | 1 | 68 | 27 | 94 | 6.83e-14 | 67.0 |
| Msa1008690 | AT1G71050.1 | 44.615 | 65 | 36 | 0 | 4 | 68 | 28 | 92 | 2.18e-13 | 63.2 |
| Msa1008690 | AT3G56891.1 | 42.424 | 66 | 38 | 0 | 8 | 73 | 20 | 85 | 2.85e-13 | 63.2 |
| Msa1008690 | AT5G17450.1 | 46.154 | 65 | 35 | 0 | 4 | 68 | 26 | 90 | 3.53e-13 | 62.4 |
| Msa1008690 | AT3G06130.2 | 40.000 | 80 | 46 | 1 | 1 | 78 | 7 | 86 | 4.07e-13 | 64.7 |
| Msa1008690 | AT3G53530.2 | 43.836 | 73 | 37 | 3 | 2 | 71 | 166 | 237 | 1.67e-12 | 62.4 |
| Msa1008690 | AT3G56891.2 | 41.935 | 62 | 36 | 0 | 12 | 73 | 1 | 62 | 2.01e-12 | 60.5 |
| Msa1008690 | AT4G08570.1 | 42.424 | 66 | 37 | 1 | 4 | 68 | 26 | 91 | 2.46e-12 | 60.5 |
| Msa1008690 | AT4G38580.1 | 48.485 | 66 | 33 | 1 | 4 | 68 | 26 | 91 | 1.04e-11 | 58.9 |
| Msa1008690 | AT4G38580.2 | 48.485 | 66 | 33 | 1 | 4 | 68 | 26 | 91 | 1.04e-11 | 58.9 |
| Msa1008690 | AT3G06130.1 | 40.000 | 80 | 46 | 1 | 1 | 78 | 7 | 86 | 2.54e-11 | 59.7 |
| Msa1008690 | AT2G28660.1 | 41.538 | 65 | 37 | 1 | 4 | 68 | 183 | 246 | 2.75e-11 | 59.3 |
| Msa1008690 | AT5G19090.5 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 3.83e-11 | 59.3 |
| Msa1008690 | AT5G19090.4 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 3.83e-11 | 59.3 |
| Msa1008690 | AT5G19090.1 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 3.83e-11 | 59.3 |
| Msa1008690 | AT5G19090.2 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 4.49e-11 | 59.3 |
| Msa1008690 | AT5G19090.3 | 36.782 | 87 | 55 | 0 | 1 | 87 | 7 | 93 | 4.49e-11 | 59.3 |
| Msa1008690 | AT5G66110.3 | 43.939 | 66 | 36 | 1 | 4 | 68 | 19 | 84 | 5.50e-11 | 56.6 |
| Msa1008690 | AT5G66110.1 | 43.939 | 66 | 36 | 1 | 4 | 68 | 19 | 84 | 5.50e-11 | 56.6 |
| Msa1008690 | AT4G10465.1 | 37.037 | 81 | 51 | 0 | 1 | 81 | 48 | 128 | 6.36e-11 | 57.4 |
| Msa1008690 | AT2G18196.2 | 37.705 | 61 | 38 | 0 | 12 | 72 | 1 | 61 | 8.57e-11 | 55.8 |
| Msa1008690 | AT3G24450.1 | 37.500 | 64 | 39 | 1 | 8 | 71 | 78 | 140 | 9.21e-11 | 56.2 |
Find 33 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTGTTTCCAAAAC+TGG | 0.256325 | 7_1:-9246345 | Msa1008690:CDS |
| CTGGAAAGAAAACTGAATTC+TGG | 0.285081 | 7_1:-9246326 | Msa1008690:CDS |
| GGCTTGTTAGTAGGCTCAAC+AGG | 0.298886 | 7_1:+9246222 | None:intergenic |
| ATGTCATGCTCAGGGTGTTC+TGG | 0.301912 | 7_1:-9246686 | Msa1008690:CDS |
| CTTTCAATGTAATGTGTTAC+TGG | 0.309944 | 7_1:-9246049 | Msa1008690:three_prime_UTR |
| TATTCTCAATTGGATGGTTA+TGG | 0.311408 | 7_1:+9247740 | None:intergenic |
| GTTTCAGAAGGCTTGTTCTC+AGG | 0.371880 | 7_1:+9246168 | None:intergenic |
| TGGAATGAGGGTTGTGGTAA+TGG | 0.374060 | 7_1:+9247760 | None:intergenic |
| GTTTCAGATGGCTTGTTAGT+AGG | 0.387494 | 7_1:+9246213 | None:intergenic |
| ATAATGAGTAATTAGCAATA+AGG | 0.392516 | 7_1:+9245932 | None:intergenic |
| GCCTCAGTTGTAGTTTCTGT+TGG | 0.393904 | 7_1:+9246285 | None:intergenic |
| TGGAAAGAAAACTGAATTCT+GGG | 0.412510 | 7_1:-9246325 | Msa1008690:CDS |
| GGTGTTCTGGAGCAGTCAAT+AGG | 0.414189 | 7_1:-9246673 | Msa1008690:CDS |
| AGGTAGAATGTATTCTCAAT+TGG | 0.460923 | 7_1:+9247730 | None:intergenic |
| AATTGGATGGTTATGGAATG+AGG | 0.473841 | 7_1:+9247747 | None:intergenic |
| GTGTTCTGGAGCAGTCAATA+GGG | 0.483895 | 7_1:-9246672 | Msa1008690:CDS |
| TGGAGCAGTCAATAGGGTCT+TGG | 0.484572 | 7_1:-9246666 | Msa1008690:CDS |
| TGAGTCTTATGCAGCAATAG+TGG | 0.519716 | 7_1:+9246143 | None:intergenic |
| ATGTAATGTGTTACTGGTGG+TGG | 0.529064 | 7_1:-9246043 | Msa1008690:three_prime_UTR |
| ACAACTGTGGCAGTTTCAGA+TGG | 0.563103 | 7_1:+9246201 | None:intergenic |
| GCAATAGTGGCAGTTTCAGA+AGG | 0.563446 | 7_1:+9246156 | None:intergenic |
| AGAATGTATTCTCAATTGGA+TGG | 0.565238 | 7_1:+9247734 | None:intergenic |
| TGGTTATGGAATGAGGGTTG+TGG | 0.570007 | 7_1:+9247754 | None:intergenic |
| ATTAAGCACCTCAGAAGACA+TGG | 0.603016 | 7_1:+9247675 | None:intergenic |
| TGAGGGTTGTGGTAATGGAG+TGG | 0.609964 | 7_1:+9247765 | None:intergenic |
| GCCAACAGAAACTACAACTG+AGG | 0.613014 | 7_1:-9246286 | Msa1008690:CDS |
| ATTGGATGGTTATGGAATGA+GGG | 0.624285 | 7_1:+9247748 | None:intergenic |
| ACTCATAACCATGTCTTCTG+AGG | 0.637871 | 7_1:-9247683 | Msa1008690:intron |
| ATTGCTGCATAAGACTCATG+TGG | 0.676195 | 7_1:-9246138 | Msa1008690:exon |
| AAAGAAAACTGAATTCTGGG+TGG | 0.688074 | 7_1:-9246322 | Msa1008690:CDS |
| GCTTGTTAGTAGGCTCAACA+GGG | 0.689513 | 7_1:+9246223 | None:intergenic |
| TCAATGTAATGTGTTACTGG+TGG | 0.697193 | 7_1:-9246046 | Msa1008690:three_prime_UTR |
| AGGCTCAATAGAGACAACTG+TGG | 0.783127 | 7_1:+9246188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATTCTTAGAAAATT+TGG | - | chr7_1:9246237-9246256 | Msa1008690:CDS | 10.0% |
| !!! | GTAAATATCATTTTTTATAA+AGG | + | chr7_1:9246911-9246930 | None:intergenic | 10.0% |
| !! | TTAATAATTCTTAGAAAATT+TGG | - | chr7_1:9246237-9246256 | Msa1008690:CDS | 10.0% |
| !!! | GTAAATATCATTTTTTATAA+AGG | + | chr7_1:9246911-9246930 | None:intergenic | 10.0% |
| !! | TAAACAAAATACAAAAAAGT+AGG | + | chr7_1:9246220-9246239 | None:intergenic | 15.0% |
| !!! | AAATCTTTAGTTTTACTTTT+AGG | - | chr7_1:9246480-9246499 | Msa1008690:intron | 15.0% |
| !! | ATTAGAAATTCATATTGATA+AGG | - | chr7_1:9246718-9246737 | Msa1008690:intron | 15.0% |
| !! | AATGATATTTACTATGAATT+TGG | - | chr7_1:9246919-9246938 | Msa1008690:intron | 15.0% |
| !! | TAAACAAAATACAAAAAAGT+AGG | + | chr7_1:9246220-9246239 | None:intergenic | 15.0% |
| !!! | AAATCTTTAGTTTTACTTTT+AGG | - | chr7_1:9246480-9246499 | Msa1008690:intron | 15.0% |
| !! | ATTAGAAATTCATATTGATA+AGG | - | chr7_1:9246718-9246737 | Msa1008690:intron | 15.0% |
| !! | AATGATATTTACTATGAATT+TGG | - | chr7_1:9246919-9246938 | Msa1008690:intron | 15.0% |
| !! | TTGTTGATCTTGAATTAATA+TGG | - | chr7_1:9246046-9246065 | Msa1008690:three_prime_UTR | 20.0% |
| !! | TAATCATTATTGCTTTCTTA+GGG | + | chr7_1:9246441-9246460 | None:intergenic | 20.0% |
| !! | ATAATCATTATTGCTTTCTT+AGG | + | chr7_1:9246442-9246461 | None:intergenic | 20.0% |
| !!! | GTTTGATTTTGTTTTTTTGA+TGG | - | chr7_1:9246557-9246576 | Msa1008690:intron | 20.0% |
| !! | AAAAGAATAAGAAAAAAGCA+GGG | + | chr7_1:9246672-9246691 | None:intergenic | 20.0% |
| !! | TAAAAGAATAAGAAAAAAGC+AGG | + | chr7_1:9246673-9246692 | None:intergenic | 20.0% |
| !! | AATGGAAAATAATTTGAACA+TGG | + | chr7_1:9246855-9246874 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTACGT+CGG | + | chr7_1:9247136-9247155 | None:intergenic | 20.0% |
| !! | ACATAATTTAGTGTAATCAT+AGG | - | chr7_1:9247161-9247180 | Msa1008690:intron | 20.0% |
| !! | TTTGATACAATATTCAAAGA+GGG | + | chr7_1:9247213-9247232 | None:intergenic | 20.0% |
| !!! | TTTTGATACAATATTCAAAG+AGG | + | chr7_1:9247214-9247233 | None:intergenic | 20.0% |
| !! | ATAATGAGTAATTAGCAATA+AGG | + | chr7_1:9247745-9247764 | None:intergenic | 20.0% |
| !! | TTGTTGATCTTGAATTAATA+TGG | - | chr7_1:9246046-9246065 | Msa1008690:three_prime_UTR | 20.0% |
| !! | TAATCATTATTGCTTTCTTA+GGG | + | chr7_1:9246441-9246460 | None:intergenic | 20.0% |
| !! | ATAATCATTATTGCTTTCTT+AGG | + | chr7_1:9246442-9246461 | None:intergenic | 20.0% |
| !!! | GTTTGATTTTGTTTTTTTGA+TGG | - | chr7_1:9246557-9246576 | Msa1008690:intron | 20.0% |
| !! | AAAAGAATAAGAAAAAAGCA+GGG | + | chr7_1:9246672-9246691 | None:intergenic | 20.0% |
| !! | TAAAAGAATAAGAAAAAAGC+AGG | + | chr7_1:9246673-9246692 | None:intergenic | 20.0% |
| !! | AATGGAAAATAATTTGAACA+TGG | + | chr7_1:9246855-9246874 | None:intergenic | 20.0% |
| !! | TCTTAAATTATTATCTACGT+CGG | + | chr7_1:9247136-9247155 | None:intergenic | 20.0% |
| !! | ACATAATTTAGTGTAATCAT+AGG | - | chr7_1:9247161-9247180 | Msa1008690:intron | 20.0% |
| !! | TTTGATACAATATTCAAAGA+GGG | + | chr7_1:9247213-9247232 | None:intergenic | 20.0% |
| !!! | TTTTGATACAATATTCAAAG+AGG | + | chr7_1:9247214-9247233 | None:intergenic | 20.0% |
| !! | ATAATGAGTAATTAGCAATA+AGG | + | chr7_1:9247745-9247764 | None:intergenic | 20.0% |
| ! | AAGAAAAGTGAACAAAAAAG+AGG | + | chr7_1:9245967-9245986 | None:intergenic | 25.0% |
| ! | CAAAATACAAAAAAGTAGGA+AGG | + | chr7_1:9246216-9246235 | None:intergenic | 25.0% |
| ! | CTAAAGATTTGTAACAAACA+AGG | + | chr7_1:9246470-9246489 | None:intergenic | 25.0% |
| ! | ACTAATAACATCGCAAATTT+AGG | + | chr7_1:9246539-9246558 | None:intergenic | 25.0% |
| ! | ATAACACATTTGTTCTTTAC+AGG | - | chr7_1:9247233-9247252 | Msa1008690:intron | 25.0% |
| ! | AAGAAAAGTGAACAAAAAAG+AGG | + | chr7_1:9245967-9245986 | None:intergenic | 25.0% |
| ! | CAAAATACAAAAAAGTAGGA+AGG | + | chr7_1:9246216-9246235 | None:intergenic | 25.0% |
| ! | CTAAAGATTTGTAACAAACA+AGG | + | chr7_1:9246470-9246489 | None:intergenic | 25.0% |
| ! | ACTAATAACATCGCAAATTT+AGG | + | chr7_1:9246539-9246558 | None:intergenic | 25.0% |
| ! | ATAACACATTTGTTCTTTAC+AGG | - | chr7_1:9247233-9247252 | Msa1008690:intron | 25.0% |
| TATTCTCAATTGGATGGTTA+TGG | + | chr7_1:9245937-9245956 | None:intergenic | 30.0% | |
| AGAATGTATTCTCAATTGGA+TGG | + | chr7_1:9245943-9245962 | None:intergenic | 30.0% | |
| AGGTAGAATGTATTCTCAAT+TGG | + | chr7_1:9245947-9245966 | None:intergenic | 30.0% | |
| AAACAAGGAACTATAGATCA+AGG | + | chr7_1:9246139-9246158 | None:intergenic | 30.0% | |
| ! | ATCACAAAACGTCTAAAACA+AGG | + | chr7_1:9246154-9246173 | None:intergenic | 30.0% |
| TGCTTTATCAAGTTATGCTA+AGG | - | chr7_1:9246601-9246620 | Msa1008690:intron | 30.0% | |
| ATTGATAAGGTGAATAAGTG+AGG | - | chr7_1:9246731-9246750 | Msa1008690:intron | 30.0% | |
| ATTTGAGAGTTAATCTCACA+AGG | - | chr7_1:9246808-9246827 | Msa1008690:intron | 30.0% | |
| ! | AGCATGACATTTTTACTTTG+AGG | + | chr7_1:9246978-9246997 | None:intergenic | 30.0% |
| AAAGTAAAAATGTCATGCTC+AGG | - | chr7_1:9246979-9246998 | Msa1008690:intron | 30.0% | |
| AAGTAAAAATGTCATGCTCA+GGG | - | chr7_1:9246980-9246999 | Msa1008690:intron | 30.0% | |
| !! | AAGCTGAGATAATTTGCTTT+AGG | + | chr7_1:9247058-9247077 | None:intergenic | 30.0% |
| GTTGTGAAAACAGTAAAACA+CGG | - | chr7_1:9247082-9247101 | Msa1008690:intron | 30.0% | |
| ! | TTCAGTTTTCTTTCCAGTTT+TGG | + | chr7_1:9247345-9247364 | None:intergenic | 30.0% |
| TGGAAAGAAAACTGAATTCT+GGG | - | chr7_1:9247349-9247368 | Msa1008690:intron | 30.0% | |
| CTTTCAATGTAATGTGTTAC+TGG | - | chr7_1:9247625-9247644 | Msa1008690:intron | 30.0% | |
| TATTCTCAATTGGATGGTTA+TGG | + | chr7_1:9245937-9245956 | None:intergenic | 30.0% | |
| AGAATGTATTCTCAATTGGA+TGG | + | chr7_1:9245943-9245962 | None:intergenic | 30.0% | |
| AGGTAGAATGTATTCTCAAT+TGG | + | chr7_1:9245947-9245966 | None:intergenic | 30.0% | |
| AAACAAGGAACTATAGATCA+AGG | + | chr7_1:9246139-9246158 | None:intergenic | 30.0% | |
| ! | ATCACAAAACGTCTAAAACA+AGG | + | chr7_1:9246154-9246173 | None:intergenic | 30.0% |
| TGCTTTATCAAGTTATGCTA+AGG | - | chr7_1:9246601-9246620 | Msa1008690:intron | 30.0% | |
| ATTGATAAGGTGAATAAGTG+AGG | - | chr7_1:9246731-9246750 | Msa1008690:intron | 30.0% | |
| ATTTGAGAGTTAATCTCACA+AGG | - | chr7_1:9246808-9246827 | Msa1008690:intron | 30.0% | |
| ! | AGCATGACATTTTTACTTTG+AGG | + | chr7_1:9246978-9246997 | None:intergenic | 30.0% |
| AAAGTAAAAATGTCATGCTC+AGG | - | chr7_1:9246979-9246998 | Msa1008690:intron | 30.0% | |
| AAGTAAAAATGTCATGCTCA+GGG | - | chr7_1:9246980-9246999 | Msa1008690:intron | 30.0% | |
| !! | AAGCTGAGATAATTTGCTTT+AGG | + | chr7_1:9247058-9247077 | None:intergenic | 30.0% |
| GTTGTGAAAACAGTAAAACA+CGG | - | chr7_1:9247082-9247101 | Msa1008690:intron | 30.0% | |
| ! | TTCAGTTTTCTTTCCAGTTT+TGG | + | chr7_1:9247345-9247364 | None:intergenic | 30.0% |
| TGGAAAGAAAACTGAATTCT+GGG | - | chr7_1:9247349-9247368 | Msa1008690:intron | 30.0% | |
| CTTTCAATGTAATGTGTTAC+TGG | - | chr7_1:9247625-9247644 | Msa1008690:intron | 30.0% | |
| ATTGGATGGTTATGGAATGA+GGG | + | chr7_1:9245929-9245948 | None:intergenic | 35.0% | |
| AATTGGATGGTTATGGAATG+AGG | + | chr7_1:9245930-9245949 | None:intergenic | 35.0% | |
| TAGAGAAGACTCATCATCAA+TGG | - | chr7_1:9246272-9246291 | Msa1008690:CDS | 35.0% | |
| CATTATTGCTTTCTTAGGGT+TGG | + | chr7_1:9246437-9246456 | None:intergenic | 35.0% | |
| ! | TCGCAAATTTAGGATCAAAC+TGG | + | chr7_1:9246529-9246548 | None:intergenic | 35.0% |
| ! | AGCAGGGCATCAAAAAAAAT+AGG | + | chr7_1:9246656-9246675 | None:intergenic | 35.0% |
| TAGTATATGCAGCAGAAACT+GGG | + | chr7_1:9246773-9246792 | None:intergenic | 35.0% | |
| ATAGTATATGCAGCAGAAAC+TGG | + | chr7_1:9246774-9246793 | None:intergenic | 35.0% | |
| CAATAGGGTCTTGGAAAAAA+TGG | - | chr7_1:9247017-9247036 | Msa1008690:intron | 35.0% | |
| TAGTGTAATCATAGGTGTCA+TGG | - | chr7_1:9247169-9247188 | Msa1008690:intron | 35.0% | |
| GAACAAAAAGTGACTGTGAA+AGG | - | chr7_1:9247284-9247303 | Msa1008690:intron | 35.0% | |
| ACAGTGTCAAAAACATCTTG+TGG | + | chr7_1:9247320-9247339 | None:intergenic | 35.0% | |
| TTTGACACTGTTTCCAAAAC+TGG | - | chr7_1:9247329-9247348 | Msa1008690:intron | 35.0% | |
| CTGGAAAGAAAACTGAATTC+TGG | - | chr7_1:9247348-9247367 | Msa1008690:intron | 35.0% | |
| AAAGAAAACTGAATTCTGGG+TGG | - | chr7_1:9247352-9247371 | Msa1008690:intron | 35.0% | |
| ! | TCAATGTAATGTGTTACTGG+TGG | - | chr7_1:9247628-9247647 | Msa1008690:intron | 35.0% |
| ATTGGATGGTTATGGAATGA+GGG | + | chr7_1:9245929-9245948 | None:intergenic | 35.0% | |
| AATTGGATGGTTATGGAATG+AGG | + | chr7_1:9245930-9245949 | None:intergenic | 35.0% | |
| TAGAGAAGACTCATCATCAA+TGG | - | chr7_1:9246272-9246291 | Msa1008690:CDS | 35.0% | |
| CATTATTGCTTTCTTAGGGT+TGG | + | chr7_1:9246437-9246456 | None:intergenic | 35.0% | |
| ! | TCGCAAATTTAGGATCAAAC+TGG | + | chr7_1:9246529-9246548 | None:intergenic | 35.0% |
| ! | AGCAGGGCATCAAAAAAAAT+AGG | + | chr7_1:9246656-9246675 | None:intergenic | 35.0% |
| TAGTATATGCAGCAGAAACT+GGG | + | chr7_1:9246773-9246792 | None:intergenic | 35.0% | |
| ATAGTATATGCAGCAGAAAC+TGG | + | chr7_1:9246774-9246793 | None:intergenic | 35.0% | |
| CAATAGGGTCTTGGAAAAAA+TGG | - | chr7_1:9247017-9247036 | Msa1008690:intron | 35.0% | |
| TAGTGTAATCATAGGTGTCA+TGG | - | chr7_1:9247169-9247188 | Msa1008690:intron | 35.0% | |
| GAACAAAAAGTGACTGTGAA+AGG | - | chr7_1:9247284-9247303 | Msa1008690:intron | 35.0% | |
| ACAGTGTCAAAAACATCTTG+TGG | + | chr7_1:9247320-9247339 | None:intergenic | 35.0% | |
| TTTGACACTGTTTCCAAAAC+TGG | - | chr7_1:9247329-9247348 | Msa1008690:intron | 35.0% | |
| CTGGAAAGAAAACTGAATTC+TGG | - | chr7_1:9247348-9247367 | Msa1008690:intron | 35.0% | |
| AAAGAAAACTGAATTCTGGG+TGG | - | chr7_1:9247352-9247371 | Msa1008690:intron | 35.0% | |
| ! | TCAATGTAATGTGTTACTGG+TGG | - | chr7_1:9247628-9247647 | Msa1008690:intron | 35.0% |
| ACTCATAACCATGTCTTCTG+AGG | - | chr7_1:9245991-9246010 | Msa1008690:three_prime_UTR | 40.0% | |
| ATTAAGCACCTCAGAAGACA+TGG | + | chr7_1:9246002-9246021 | None:intergenic | 40.0% | |
| TCTGACAGAATAGTCATGTG+TGG | + | chr7_1:9246629-9246648 | None:intergenic | 40.0% | |
| AGTATATGCAGCAGAAACTG+GGG | + | chr7_1:9246772-9246791 | None:intergenic | 40.0% | |
| CAGTCTGCAATGATCACAAT+GGG | + | chr7_1:9246951-9246970 | None:intergenic | 40.0% | |
| ACAGTCTGCAATGATCACAA+TGG | + | chr7_1:9246952-9246971 | None:intergenic | 40.0% | |
| AGGGTCTTGGAAAAAATGGA+AGG | - | chr7_1:9247021-9247040 | Msa1008690:intron | 40.0% | |
| ! | TGTAATCATAGGTGTCATGG+TGG | - | chr7_1:9247172-9247191 | Msa1008690:intron | 40.0% |
| !!! | GTTTCTGTTGGCTTGTTTTC+AGG | + | chr7_1:9247380-9247399 | None:intergenic | 40.0% |
| !! | GCTTCTGAAGACTTGTTTTC+AGG | + | chr7_1:9247419-9247438 | None:intergenic | 40.0% |
| !! | GTTTCAGATGGCTTGTTAGT+AGG | + | chr7_1:9247464-9247483 | None:intergenic | 40.0% |
| ! | TGAGTCTTATGCAGCAATAG+TGG | + | chr7_1:9247534-9247553 | None:intergenic | 40.0% |
| ATTGCTGCATAAGACTCATG+TGG | - | chr7_1:9247536-9247555 | Msa1008690:intron | 40.0% | |
| ! | ATGTAATGTGTTACTGGTGG+TGG | - | chr7_1:9247631-9247650 | Msa1008690:intron | 40.0% |
| ACTCATAACCATGTCTTCTG+AGG | - | chr7_1:9245991-9246010 | Msa1008690:three_prime_UTR | 40.0% | |
| ATTAAGCACCTCAGAAGACA+TGG | + | chr7_1:9246002-9246021 | None:intergenic | 40.0% | |
| TCTGACAGAATAGTCATGTG+TGG | + | chr7_1:9246629-9246648 | None:intergenic | 40.0% | |
| AGTATATGCAGCAGAAACTG+GGG | + | chr7_1:9246772-9246791 | None:intergenic | 40.0% | |
| CAGTCTGCAATGATCACAAT+GGG | + | chr7_1:9246951-9246970 | None:intergenic | 40.0% | |
| ACAGTCTGCAATGATCACAA+TGG | + | chr7_1:9246952-9246971 | None:intergenic | 40.0% | |
| AGGGTCTTGGAAAAAATGGA+AGG | - | chr7_1:9247021-9247040 | Msa1008690:intron | 40.0% | |
| ! | TGTAATCATAGGTGTCATGG+TGG | - | chr7_1:9247172-9247191 | Msa1008690:intron | 40.0% |
| !!! | GTTTCTGTTGGCTTGTTTTC+AGG | + | chr7_1:9247380-9247399 | None:intergenic | 40.0% |
| !! | GCTTCTGAAGACTTGTTTTC+AGG | + | chr7_1:9247419-9247438 | None:intergenic | 40.0% |
| !! | GTTTCAGATGGCTTGTTAGT+AGG | + | chr7_1:9247464-9247483 | None:intergenic | 40.0% |
| ! | TGAGTCTTATGCAGCAATAG+TGG | + | chr7_1:9247534-9247553 | None:intergenic | 40.0% |
| ATTGCTGCATAAGACTCATG+TGG | - | chr7_1:9247536-9247555 | Msa1008690:intron | 40.0% | |
| ! | ATGTAATGTGTTACTGGTGG+TGG | - | chr7_1:9247631-9247650 | Msa1008690:intron | 40.0% |
| TGGAATGAGGGTTGTGGTAA+TGG | + | chr7_1:9245917-9245936 | None:intergenic | 45.0% | |
| TGGTTATGGAATGAGGGTTG+TGG | + | chr7_1:9245923-9245942 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGTGTC+CGG | - | chr7_1:9246738-9246757 | Msa1008690:intron | 45.0% |
| !! | GTGTTCTGGAGCAGTCAATA+GGG | - | chr7_1:9247002-9247021 | Msa1008690:intron | 45.0% |
| TATTATCTACGTCGGTGTGC+TGG | + | chr7_1:9247128-9247147 | None:intergenic | 45.0% | |
| GCCAACAGAAACTACAACTG+AGG | - | chr7_1:9247388-9247407 | Msa1008690:intron | 45.0% | |
| GCCTCAGTTGTAGTTTCTGT+TGG | + | chr7_1:9247392-9247411 | None:intergenic | 45.0% | |
| ! | GCTTGTTAGTAGGCTCAACA+GGG | + | chr7_1:9247454-9247473 | None:intergenic | 45.0% |
| ACAACTGTGGCAGTTTCAGA+TGG | + | chr7_1:9247476-9247495 | None:intergenic | 45.0% | |
| AGGCTCAATAGAGACAACTG+TGG | + | chr7_1:9247489-9247508 | None:intergenic | 45.0% | |
| ! | GTTTCAGAAGGCTTGTTCTC+AGG | + | chr7_1:9247509-9247528 | None:intergenic | 45.0% |
| GCAATAGTGGCAGTTTCAGA+AGG | + | chr7_1:9247521-9247540 | None:intergenic | 45.0% | |
| TGGAATGAGGGTTGTGGTAA+TGG | + | chr7_1:9245917-9245936 | None:intergenic | 45.0% | |
| TGGTTATGGAATGAGGGTTG+TGG | + | chr7_1:9245923-9245942 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGTGTC+CGG | - | chr7_1:9246738-9246757 | Msa1008690:intron | 45.0% |
| !! | GTGTTCTGGAGCAGTCAATA+GGG | - | chr7_1:9247002-9247021 | Msa1008690:intron | 45.0% |
| TATTATCTACGTCGGTGTGC+TGG | + | chr7_1:9247128-9247147 | None:intergenic | 45.0% | |
| GCCAACAGAAACTACAACTG+AGG | - | chr7_1:9247388-9247407 | Msa1008690:intron | 45.0% | |
| GCCTCAGTTGTAGTTTCTGT+TGG | + | chr7_1:9247392-9247411 | None:intergenic | 45.0% | |
| ! | GCTTGTTAGTAGGCTCAACA+GGG | + | chr7_1:9247454-9247473 | None:intergenic | 45.0% |
| ACAACTGTGGCAGTTTCAGA+TGG | + | chr7_1:9247476-9247495 | None:intergenic | 45.0% | |
| AGGCTCAATAGAGACAACTG+TGG | + | chr7_1:9247489-9247508 | None:intergenic | 45.0% | |
| ! | GTTTCAGAAGGCTTGTTCTC+AGG | + | chr7_1:9247509-9247528 | None:intergenic | 45.0% |
| GCAATAGTGGCAGTTTCAGA+AGG | + | chr7_1:9247521-9247540 | None:intergenic | 45.0% | |
| !!! | GTATTTTTTATTTTATTTTT+TGG | - | chr7_1:9246089-9246108 | Msa1008690:three_prime_UTR | 5.0% |
| !!! | AATTGAATTTAATTTAAAAA+TGG | + | chr7_1:9246873-9246892 | None:intergenic | 5.0% |
| !!! | GTATTTTTTATTTTATTTTT+TGG | - | chr7_1:9246089-9246108 | Msa1008690:three_prime_UTR | 5.0% |
| !!! | AATTGAATTTAATTTAAAAA+TGG | + | chr7_1:9246873-9246892 | None:intergenic | 5.0% |
| !! | TGAGGGTTGTGGTAATGGAG+TGG | + | chr7_1:9245912-9245931 | None:intergenic | 50.0% |
| ! | GGTGAATAAGTGAGGTGTCC+GGG | - | chr7_1:9246739-9246758 | Msa1008690:intron | 50.0% |
| ! | GTGAATAAGTGAGGTGTCCG+GGG | - | chr7_1:9246740-9246759 | Msa1008690:intron | 50.0% |
| ! | ATGTCATGCTCAGGGTGTTC+TGG | - | chr7_1:9246988-9247007 | Msa1008690:intron | 50.0% |
| !! | GGTGTTCTGGAGCAGTCAAT+AGG | - | chr7_1:9247001-9247020 | Msa1008690:intron | 50.0% |
| TGGAGCAGTCAATAGGGTCT+TGG | - | chr7_1:9247008-9247027 | Msa1008690:intron | 50.0% | |
| AAACACGGACACAGACACGA+CGG | - | chr7_1:9247097-9247116 | Msa1008690:intron | 50.0% | |
| ! | CATAGGTGTCATGGTGGTGT+CGG | - | chr7_1:9247178-9247197 | Msa1008690:intron | 50.0% |
| !! | GGCTTGTTAGTAGGCTCAAC+AGG | + | chr7_1:9247455-9247474 | None:intergenic | 50.0% |
| !! | TGAGGGTTGTGGTAATGGAG+TGG | + | chr7_1:9245912-9245931 | None:intergenic | 50.0% |
| ! | GGTGAATAAGTGAGGTGTCC+GGG | - | chr7_1:9246739-9246758 | Msa1008690:intron | 50.0% |
| ! | GTGAATAAGTGAGGTGTCCG+GGG | - | chr7_1:9246740-9246759 | Msa1008690:intron | 50.0% |
| ! | ATGTCATGCTCAGGGTGTTC+TGG | - | chr7_1:9246988-9247007 | Msa1008690:intron | 50.0% |
| !! | GGTGTTCTGGAGCAGTCAAT+AGG | - | chr7_1:9247001-9247020 | Msa1008690:intron | 50.0% |
| TGGAGCAGTCAATAGGGTCT+TGG | - | chr7_1:9247008-9247027 | Msa1008690:intron | 50.0% | |
| AAACACGGACACAGACACGA+CGG | - | chr7_1:9247097-9247116 | Msa1008690:intron | 50.0% | |
| ! | CATAGGTGTCATGGTGGTGT+CGG | - | chr7_1:9247178-9247197 | Msa1008690:intron | 50.0% |
| !! | GGCTTGTTAGTAGGCTCAAC+AGG | + | chr7_1:9247455-9247474 | None:intergenic | 50.0% |
| AGAAACTGGGGTTCGAACCC+CGG | + | chr7_1:9246760-9246779 | None:intergenic | 55.0% | |
| AACACGGACACAGACACGAC+GGG | - | chr7_1:9247098-9247117 | Msa1008690:intron | 55.0% | |
| AGAAACTGGGGTTCGAACCC+CGG | + | chr7_1:9246760-9246779 | None:intergenic | 55.0% | |
| AACACGGACACAGACACGAC+GGG | - | chr7_1:9247098-9247117 | Msa1008690:intron | 55.0% | |
| ACACGGACACAGACACGACG+GGG | - | chr7_1:9247099-9247118 | Msa1008690:intron | 60.0% | |
| ACACGGACACAGACACGACG+GGG | - | chr7_1:9247099-9247118 | Msa1008690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 9245907 | 9247789 | 9245907 | ID=Msa1008690;Name=Msa1008690 |
| chr7_1 | mRNA | 9245907 | 9247789 | 9245907 | ID=Msa1008690-mRNA-1;Parent=Msa1008690;Name=Msa1008690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=94|1|1|1|1|1|3|242|126 |
| chr7_1 | exon | 9245907 | 9246441 | 9245907 | ID=Msa1008690-mRNA-1:exon:2648;Parent=Msa1008690-mRNA-1 |
| chr7_1 | exon | 9246654 | 9246729 | 9246654 | ID=Msa1008690-mRNA-1:exon:2647;Parent=Msa1008690-mRNA-1 |
| chr7_1 | exon | 9247684 | 9247789 | 9247684 | ID=Msa1008690-mRNA-1:exon:2646;Parent=Msa1008690-mRNA-1 |
| chr7_1 | five_prime_UTR | 9247696 | 9247789 | 9247696 | ID=Msa1008690-mRNA-1:five_prime_utr;Parent=Msa1008690-mRNA-1 |
| chr7_1 | CDS | 9247684 | 9247695 | 9247684 | ID=Msa1008690-mRNA-1:cds;Parent=Msa1008690-mRNA-1 |
| chr7_1 | CDS | 9246654 | 9246729 | 9246654 | ID=Msa1008690-mRNA-1:cds;Parent=Msa1008690-mRNA-1 |
| chr7_1 | CDS | 9246149 | 9246441 | 9246149 | ID=Msa1008690-mRNA-1:cds;Parent=Msa1008690-mRNA-1 |
| chr7_1 | three_prime_UTR | 9245907 | 9246148 | 9245907 | ID=Msa1008690-mRNA-1:three_prime_utr;Parent=Msa1008690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
