AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009260 MtrunA17_Chr3g0140461 90.305 361 34 1 1 361 26 385 0.0 651
Msa1009260 MtrunA17_Chr3g0140491 83.333 360 58 1 1 360 1 358 0.0 612
Msa1009260 MtrunA17_Chr4g0065451 82.432 148 26 0 213 360 1 148 1.15e-87 261
Msa1009260 MtrunA17_Chr4g0065461 78.873 142 26 2 1 141 1 139 1.53e-66 207
Msa1009260 MtrunA17_Chr4g0065531 33.777 376 223 9 3 364 2 365 4.53e-66 213
Msa1009260 MtrunA17_Chr4g0065561 35.753 372 213 9 9 364 6 367 3.95e-65 220
Msa1009260 MtrunA17_Chr1g0149821 34.188 351 212 5 22 359 32 376 4.07e-64 209
Msa1009260 MtrunA17_Chr4g0065541 34.844 353 208 7 26 365 17 360 9.78e-63 213
Msa1009260 MtrunA17_Chr4g0065511 34.111 343 204 9 30 358 35 369 4.19e-56 187
Msa1009260 MtrunA17_Chr4g0065501 34.582 347 201 8 30 358 37 375 1.05e-52 179
Msa1009260 MtrunA17_Chr4g0066051 33.898 177 113 1 6 182 4 176 3.59e-25 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009260 AT4G19810.2 48.611 360 170 6 11 361 9 362 4.15e-112 332
Msa1009260 AT4G19810.1 48.611 360 170 6 11 361 9 362 4.15e-112 332
Msa1009260 AT4G19820.1 45.983 361 180 6 10 361 6 360 5.01e-100 301
Msa1009260 AT4G19800.1 43.188 345 182 5 25 361 2 340 1.42e-93 285
Msa1009260 AT4G19750.1 43.407 364 178 10 17 363 1 353 8.06e-92 280
Msa1009260 AT4G19760.1 43.360 369 177 10 17 361 1 361 3.45e-90 276
Msa1009260 AT4G19720.1 42.286 350 175 7 30 361 6 346 1.53e-85 263
Msa1009260 AT4G19730.1 42.478 339 166 9 17 333 1 332 3.41e-76 238
Msa1009260 AT4G19770.1 40.613 261 142 5 115 367 1 256 8.95e-58 189
Msa1009260 AT4G19740.1 35.079 191 110 5 138 318 24 210 1.56e-28 110

Find 87 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATGGAAGTTGTTATTTC+TGG 0.149476 7_1:+10480600 None:intergenic
ATTCAAAGCAGTGTTTAATT+AGG 0.224117 7_1:+10479899 None:intergenic
ATACCAATAACCACCTTTAA+TGG 0.242528 7_1:+10480912 None:intergenic
GTCAAGCAAAATGGATTGTT+TGG 0.254812 7_1:-10479992 Msa1009260:CDS
GTTTGAGTTGGATAACTATC+TGG 0.256686 7_1:+10480340 None:intergenic
TCTACAAACGCTGCCATTAA+AGG 0.257757 7_1:-10480925 Msa1009260:CDS
GTTGCTTATGTCAAGCAAAA+TGG 0.266710 7_1:-10480001 Msa1009260:CDS
GCACTTGGTTTACCCTTCTA+TGG 0.267748 7_1:-10480220 Msa1009260:CDS
CAGCGTTTGTAGAGGAAAAT+TGG 0.280388 7_1:+10480935 None:intergenic
CTGCCATTAAAGGTGGTTAT+TGG 0.284781 7_1:-10480915 Msa1009260:CDS
CAGATGAAGGTATCACAAAA+TGG 0.294502 7_1:-10480273 Msa1009260:CDS
ACTCCATTTGTAACCATAGA+AGG 0.300520 7_1:+10480207 None:intergenic
TACCTTCATCTGCACTAAAT+TGG 0.339776 7_1:+10480284 None:intergenic
GCCGCAGAGTCTAGGAGTTC+CGG 0.370169 7_1:-10480493 Msa1009260:CDS
ATGGTGACTTGGTTGGTATT+AGG 0.371295 7_1:+10480811 None:intergenic
CTATGGTTACAAATGGAGTT+TGG 0.386230 7_1:-10480203 Msa1009260:CDS
CGAATTACTCTTTAACTGAA+TGG 0.386421 7_1:+10480747 None:intergenic
CTGCACTAAATTGGCCAGTT+GGG 0.395696 7_1:+10480293 None:intergenic
TAACAACAGTACCGGCTTGC+CGG 0.396736 7_1:+10480474 None:intergenic
AGTAAAGCTACGCAGGGACT+AGG 0.407460 7_1:-10480154 Msa1009260:CDS
CTCAAAATTACTGCTTCAAA+GGG 0.414658 7_1:-10480069 Msa1009260:CDS
GACGTTGAAATGACCAACTT+TGG 0.415190 7_1:-10480547 Msa1009260:CDS
CATTCAGTTAAAGAGTAATT+CGG 0.416514 7_1:-10480746 Msa1009260:CDS
TGTGCTTTAGTAGAACGTTC+AGG 0.418141 7_1:+10480691 None:intergenic
TGTTGCAAACAACTTGGATT+GGG 0.430200 7_1:-10480392 Msa1009260:CDS
TACCCTTCTATGGTTACAAA+TGG 0.432906 7_1:-10480210 Msa1009260:CDS
AAATTGGACAAGACAACAAT+TGG 0.443469 7_1:-10479955 Msa1009260:CDS
AAACAAGTGGGTGAAATAAG+AGG 0.449767 7_1:+10480855 None:intergenic
GTAAAGCTACGCAGGGACTA+GGG 0.458430 7_1:-10480153 Msa1009260:CDS
CTGCTGTGGCCGCAGAGTCT+AGG 0.459211 7_1:-10480501 Msa1009260:CDS
ACTCAAAATTACTGCTTCAA+AGG 0.460609 7_1:-10480070 Msa1009260:CDS
TCCATGGCCTTGATCTTGAC+TGG 0.462821 7_1:-10480585 Msa1009260:CDS
ACTGCTTCAAAGGGACAGAT+TGG 0.463515 7_1:-10480060 Msa1009260:CDS
ATGTTGCAAACAACTTGGAT+TGG 0.470996 7_1:-10480393 Msa1009260:CDS
TTTGAGTTGGATAACTATCT+GGG 0.472310 7_1:+10480341 None:intergenic
CTTGGTTGGTATTAGGATCA+AGG 0.473190 7_1:+10480818 None:intergenic
TCAAGATGTTGCAAACAACT+TGG 0.478830 7_1:-10480398 Msa1009260:CDS
GCGGGTGGTTGTGTTTGAGT+TGG 0.482952 7_1:+10480328 None:intergenic
ATCACAAAATGGGTAGGGTT+AGG 0.483616 7_1:-10480262 Msa1009260:CDS
TCTGCACTAAATTGGCCAGT+TGG 0.504088 7_1:+10480292 None:intergenic
AGATGAAGGTATCACAAAAT+GGG 0.506219 7_1:-10480272 Msa1009260:CDS
GTCATTTCAACGTCTGAGGA+TGG 0.506694 7_1:+10480556 None:intergenic
TGACCTGGGTAGTACTTCAA+TGG 0.515075 7_1:+10480418 None:intergenic
TAACTGAATGGTTTCAGTGA+AGG 0.515519 7_1:+10480759 None:intergenic
TTGGAGAATCATGAGGAGAG+TGG 0.515988 7_1:+10480960 None:intergenic
AATTGGACTCTTTCTCAAGC+AGG 0.528807 7_1:-10479938 Msa1009260:CDS
AGCTGCGTGTGTAGAAGAAA+TGG 0.529170 7_1:+10480792 None:intergenic
TTGTAGAGGAAAATTGGAGT+TGG 0.530932 7_1:+10480941 None:intergenic
TGTAATGAGTAAACCAAAGT+TGG 0.531161 7_1:+10480534 None:intergenic
GTCTAGGAGTTCCGGCAAGC+CGG 0.536961 7_1:-10480485 Msa1009260:CDS
TTGCTTGACATAAGCAACCT+TGG 0.542870 7_1:+10480006 None:intergenic
TTGTTTGCAACATCTTGACC+TGG 0.548598 7_1:+10480403 None:intergenic
GCCAGTCAAGATCAAGGCCA+TGG 0.551440 7_1:+10480584 None:intergenic
AGTTGTTATTTCTGGCTAGT+CGG 0.552779 7_1:+10480608 None:intergenic
GAAGGTATCACAAAATGGGT+AGG 0.554568 7_1:-10480268 Msa1009260:CDS
TTGTTATCTGCTGCAGTGGG+TGG 0.559981 7_1:-10480457 Msa1009260:CDS
CTGTTGTTATCTGCTGCAGT+GGG 0.561968 7_1:-10480460 Msa1009260:CDS
ACTGGCTTGGCTAGACATGT+TGG 0.568429 7_1:+10480660 None:intergenic
GGCCAATTTAGTGCAGATGA+AGG 0.573534 7_1:-10480286 Msa1009260:CDS
AACAAGTGGGTGAAATAAGA+GGG 0.575691 7_1:+10480856 None:intergenic
CAGCAAATGCACAAAACAAG+TGG 0.579073 7_1:+10480842 None:intergenic
AAGGTATCACAAAATGGGTA+GGG 0.585197 7_1:-10480267 Msa1009260:CDS
CTCCATTTGTAACCATAGAA+GGG 0.586080 7_1:+10480208 None:intergenic
CACTCAGAGTATATCTGCCA+AGG 0.587655 7_1:-10480023 Msa1009260:CDS
GATACAGCCAGTCAAGATCA+AGG 0.589592 7_1:+10480578 None:intergenic
GTTGGTCATTTCAACGTCTG+AGG 0.592628 7_1:+10480552 None:intergenic
GCAGCAGATAACAACAGTAC+CGG 0.602334 7_1:+10480466 None:intergenic
TGAGGAGAGTGGAAATCAAG+AGG 0.606133 7_1:+10480971 None:intergenic
TTCAAAGGGACAGATTGGTA+TGG 0.606399 7_1:-10480055 Msa1009260:CDS
TTTAATGGCAGCGTTTGTAG+AGG 0.608544 7_1:+10480927 None:intergenic
TACAGCGTGGAAAGCTGCTG+TGG 0.613884 7_1:-10480515 Msa1009260:CDS
ACTGTTGTTATCTGCTGCAG+TGG 0.615630 7_1:-10480461 Msa1009260:CDS
GGTGGTTATTGGTATTCTGA+TGG 0.621200 7_1:-10480904 Msa1009260:CDS
TAAAGCTACGCAGGGACTAG+GGG 0.627917 7_1:-10480152 Msa1009260:CDS
GCCAGAAATAACAACTTCCA+TGG 0.628402 7_1:-10480601 Msa1009260:CDS
ACTAGGGGCAGTGAAGTACA+AGG 0.628451 7_1:-10480137 Msa1009260:CDS
ATTGGAGTTGGAGAATCATG+AGG 0.636575 7_1:+10480953 None:intergenic
AGCAAATGCACAAAACAAGT+GGG 0.646781 7_1:+10480843 None:intergenic
GATCAATCTCAGAAACTGCA+AGG 0.648716 7_1:+10480878 None:intergenic
TGTTTGCAACATCTTGACCT+GGG 0.652675 7_1:+10480404 None:intergenic
ACAAACGCTGCCATTAAAGG+TGG 0.664680 7_1:-10480922 Msa1009260:CDS
AGAAGAAATGGTGACTTGGT+TGG 0.669123 7_1:+10480804 None:intergenic
GTGTAGAAGAAATGGTGACT+TGG 0.674829 7_1:+10480800 None:intergenic
ACTCCATTGAAGTACTACCC+AGG 0.697331 7_1:-10480421 Msa1009260:CDS
GCCGGAACTCCTAGACTCTG+CGG 0.700936 7_1:+10480492 None:intergenic
TTGAGTTGGATAACTATCTG+GGG 0.706447 7_1:+10480342 None:intergenic
TTGGTTTACTCATTACAGCG+TGG 0.729279 7_1:-10480528 Msa1009260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGCTTTACTAAAAATTCTA+CGG + chr7_1:10480746-10480765 None:intergenic 20.0%
!! TACAAGGATATAAAAAATAC+TGG - chr7_1:10480789-10480808 Msa1009260:CDS 20.0%
!! ACAAGGATATAAAAAATACT+GGG - chr7_1:10480790-10480809 Msa1009260:CDS 20.0%
!!! TAGCTTTACTAAAAATTCTA+CGG + chr7_1:10480746-10480765 None:intergenic 20.0%
!! TACAAGGATATAAAAAATAC+TGG - chr7_1:10480789-10480808 Msa1009260:CDS 20.0%
!! ACAAGGATATAAAAAATACT+GGG - chr7_1:10480790-10480809 Msa1009260:CDS 20.0%
! CATTCAGTTAAAGAGTAATT+CGG - chr7_1:10480164-10480183 Msa1009260:CDS 25.0%
!! AAGAATCTATGAACGATTTT+CGG + chr7_1:10480278-10480297 None:intergenic 25.0%
! CTAAAAATTCTACGGTTATT+AGG + chr7_1:10480738-10480757 None:intergenic 25.0%
! CAAGGATATAAAAAATACTG+GGG - chr7_1:10480791-10480810 Msa1009260:CDS 25.0%
! AAGGATATAAAAAATACTGG+GGG - chr7_1:10480792-10480811 Msa1009260:CDS 25.0%
! CATTCAGTTAAAGAGTAATT+CGG - chr7_1:10480164-10480183 Msa1009260:CDS 25.0%
!! AAGAATCTATGAACGATTTT+CGG + chr7_1:10480278-10480297 None:intergenic 25.0%
! CTAAAAATTCTACGGTTATT+AGG + chr7_1:10480738-10480757 None:intergenic 25.0%
! CAAGGATATAAAAAATACTG+GGG - chr7_1:10480791-10480810 Msa1009260:CDS 25.0%
! AAGGATATAAAAAATACTGG+GGG - chr7_1:10480792-10480811 Msa1009260:CDS 25.0%
ATACCAATAACCACCTTTAA+TGG + chr7_1:10480001-10480020 None:intergenic 30.0%
CGAATTACTCTTTAACTGAA+TGG + chr7_1:10480166-10480185 None:intergenic 30.0%
! GTGAAAACGCTTTTATCAAT+TGG - chr7_1:10480186-10480205 Msa1009260:CDS 30.0%
! AAAACGCTTTTATCAATTGG+TGG - chr7_1:10480189-10480208 Msa1009260:CDS 30.0%
TGTAATGAGTAAACCAAAGT+TGG + chr7_1:10480379-10480398 None:intergenic 30.0%
!! TTTGAGTTGGATAACTATCT+GGG + chr7_1:10480572-10480591 None:intergenic 30.0%
!! AGATGAAGGTATCACAAAAT+GGG - chr7_1:10480638-10480657 Msa1009260:CDS 30.0%
!!! AATTTTTAGTAAAGCTACGC+AGG - chr7_1:10480749-10480768 Msa1009260:CDS 30.0%
!!! ATTTTTAGTAAAGCTACGCA+GGG - chr7_1:10480750-10480769 Msa1009260:CDS 30.0%
AGGATATAAAAAATACTGGG+GGG - chr7_1:10480793-10480812 Msa1009260:CDS 30.0%
!! GCAGTAATTTTGAGTATATG+TGG + chr7_1:10480835-10480854 None:intergenic 30.0%
ACTCAAAATTACTGCTTCAA+AGG - chr7_1:10480840-10480859 Msa1009260:CDS 30.0%
CTCAAAATTACTGCTTCAAA+GGG - chr7_1:10480841-10480860 Msa1009260:CDS 30.0%
! GATTGTTTGGATATTTTGCT+TGG - chr7_1:10480931-10480950 Msa1009260:CDS 30.0%
AAATTGGACAAGACAACAAT+TGG - chr7_1:10480955-10480974 Msa1009260:CDS 30.0%
ATACCAATAACCACCTTTAA+TGG + chr7_1:10480001-10480020 None:intergenic 30.0%
CGAATTACTCTTTAACTGAA+TGG + chr7_1:10480166-10480185 None:intergenic 30.0%
! GTGAAAACGCTTTTATCAAT+TGG - chr7_1:10480186-10480205 Msa1009260:CDS 30.0%
! AAAACGCTTTTATCAATTGG+TGG - chr7_1:10480189-10480208 Msa1009260:CDS 30.0%
TGTAATGAGTAAACCAAAGT+TGG + chr7_1:10480379-10480398 None:intergenic 30.0%
!! TTTGAGTTGGATAACTATCT+GGG + chr7_1:10480572-10480591 None:intergenic 30.0%
!! AGATGAAGGTATCACAAAAT+GGG - chr7_1:10480638-10480657 Msa1009260:CDS 30.0%
!!! AATTTTTAGTAAAGCTACGC+AGG - chr7_1:10480749-10480768 Msa1009260:CDS 30.0%
!!! ATTTTTAGTAAAGCTACGCA+GGG - chr7_1:10480750-10480769 Msa1009260:CDS 30.0%
AGGATATAAAAAATACTGGG+GGG - chr7_1:10480793-10480812 Msa1009260:CDS 30.0%
!! GCAGTAATTTTGAGTATATG+TGG + chr7_1:10480835-10480854 None:intergenic 30.0%
ACTCAAAATTACTGCTTCAA+AGG - chr7_1:10480840-10480859 Msa1009260:CDS 30.0%
CTCAAAATTACTGCTTCAAA+GGG - chr7_1:10480841-10480860 Msa1009260:CDS 30.0%
! GATTGTTTGGATATTTTGCT+TGG - chr7_1:10480931-10480950 Msa1009260:CDS 30.0%
AAATTGGACAAGACAACAAT+TGG - chr7_1:10480955-10480974 Msa1009260:CDS 30.0%
TTGTAGAGGAAAATTGGAGT+TGG + chr7_1:10479972-10479991 None:intergenic 35.0%
AACAAGTGGGTGAAATAAGA+GGG + chr7_1:10480057-10480076 None:intergenic 35.0%
AAACAAGTGGGTGAAATAAG+AGG + chr7_1:10480058-10480077 None:intergenic 35.0%
AGCAAATGCACAAAACAAGT+GGG + chr7_1:10480070-10480089 None:intergenic 35.0%
TAACTGAATGGTTTCAGTGA+AGG + chr7_1:10480154-10480173 None:intergenic 35.0%
!! AGTTGTTATTTCTGGCTAGT+CGG + chr7_1:10480305-10480324 None:intergenic 35.0%
TCAAGATGTTGCAAACAACT+TGG - chr7_1:10480512-10480531 Msa1009260:CDS 35.0%
ATGTTGCAAACAACTTGGAT+TGG - chr7_1:10480517-10480536 Msa1009260:CDS 35.0%
TGTTGCAAACAACTTGGATT+GGG - chr7_1:10480518-10480537 Msa1009260:CDS 35.0%
!! TTGAGTTGGATAACTATCTG+GGG + chr7_1:10480571-10480590 None:intergenic 35.0%
!! GTTTGAGTTGGATAACTATC+TGG + chr7_1:10480573-10480592 None:intergenic 35.0%
TACCTTCATCTGCACTAAAT+TGG + chr7_1:10480629-10480648 None:intergenic 35.0%
!! CAGATGAAGGTATCACAAAA+TGG - chr7_1:10480637-10480656 Msa1009260:CDS 35.0%
! AAGGTATCACAAAATGGGTA+GGG - chr7_1:10480643-10480662 Msa1009260:CDS 35.0%
TACCCTTCTATGGTTACAAA+TGG - chr7_1:10480700-10480719 Msa1009260:CDS 35.0%
CTCCATTTGTAACCATAGAA+GGG + chr7_1:10480705-10480724 None:intergenic 35.0%
ACTCCATTTGTAACCATAGA+AGG + chr7_1:10480706-10480725 None:intergenic 35.0%
CTATGGTTACAAATGGAGTT+TGG - chr7_1:10480707-10480726 Msa1009260:CDS 35.0%
GTTGCTTATGTCAAGCAAAA+TGG - chr7_1:10480909-10480928 Msa1009260:CDS 35.0%
!! GTCAAGCAAAATGGATTGTT+TGG - chr7_1:10480918-10480937 Msa1009260:CDS 35.0%
! GGATATTTTGCTTGGCAAAT+TGG - chr7_1:10480939-10480958 Msa1009260:CDS 35.0%
TTGTAGAGGAAAATTGGAGT+TGG + chr7_1:10479972-10479991 None:intergenic 35.0%
AACAAGTGGGTGAAATAAGA+GGG + chr7_1:10480057-10480076 None:intergenic 35.0%
AAACAAGTGGGTGAAATAAG+AGG + chr7_1:10480058-10480077 None:intergenic 35.0%
AGCAAATGCACAAAACAAGT+GGG + chr7_1:10480070-10480089 None:intergenic 35.0%
TAACTGAATGGTTTCAGTGA+AGG + chr7_1:10480154-10480173 None:intergenic 35.0%
!! AGTTGTTATTTCTGGCTAGT+CGG + chr7_1:10480305-10480324 None:intergenic 35.0%
TCAAGATGTTGCAAACAACT+TGG - chr7_1:10480512-10480531 Msa1009260:CDS 35.0%
ATGTTGCAAACAACTTGGAT+TGG - chr7_1:10480517-10480536 Msa1009260:CDS 35.0%
TGTTGCAAACAACTTGGATT+GGG - chr7_1:10480518-10480537 Msa1009260:CDS 35.0%
!! TTGAGTTGGATAACTATCTG+GGG + chr7_1:10480571-10480590 None:intergenic 35.0%
!! GTTTGAGTTGGATAACTATC+TGG + chr7_1:10480573-10480592 None:intergenic 35.0%
TACCTTCATCTGCACTAAAT+TGG + chr7_1:10480629-10480648 None:intergenic 35.0%
!! CAGATGAAGGTATCACAAAA+TGG - chr7_1:10480637-10480656 Msa1009260:CDS 35.0%
! AAGGTATCACAAAATGGGTA+GGG - chr7_1:10480643-10480662 Msa1009260:CDS 35.0%
TACCCTTCTATGGTTACAAA+TGG - chr7_1:10480700-10480719 Msa1009260:CDS 35.0%
CTCCATTTGTAACCATAGAA+GGG + chr7_1:10480705-10480724 None:intergenic 35.0%
ACTCCATTTGTAACCATAGA+AGG + chr7_1:10480706-10480725 None:intergenic 35.0%
CTATGGTTACAAATGGAGTT+TGG - chr7_1:10480707-10480726 Msa1009260:CDS 35.0%
GTTGCTTATGTCAAGCAAAA+TGG - chr7_1:10480909-10480928 Msa1009260:CDS 35.0%
!! GTCAAGCAAAATGGATTGTT+TGG - chr7_1:10480918-10480937 Msa1009260:CDS 35.0%
! GGATATTTTGCTTGGCAAAT+TGG - chr7_1:10480939-10480958 Msa1009260:CDS 35.0%
! CAAGAGGAACGAATGCTTTT+TGG + chr7_1:10479926-10479945 None:intergenic 40.0%
ATTGGAGTTGGAGAATCATG+AGG + chr7_1:10479960-10479979 None:intergenic 40.0%
CAGCGTTTGTAGAGGAAAAT+TGG + chr7_1:10479978-10479997 None:intergenic 40.0%
TTTAATGGCAGCGTTTGTAG+AGG + chr7_1:10479986-10480005 None:intergenic 40.0%
TCTACAAACGCTGCCATTAA+AGG - chr7_1:10479985-10480004 Msa1009260:CDS 40.0%
CTGCCATTAAAGGTGGTTAT+TGG - chr7_1:10479995-10480014 Msa1009260:CDS 40.0%
GGTGGTTATTGGTATTCTGA+TGG - chr7_1:10480006-10480025 Msa1009260:CDS 40.0%
GATCAATCTCAGAAACTGCA+AGG + chr7_1:10480035-10480054 None:intergenic 40.0%
CAGCAAATGCACAAAACAAG+TGG + chr7_1:10480071-10480090 None:intergenic 40.0%
! CTTGGTTGGTATTAGGATCA+AGG + chr7_1:10480095-10480114 None:intergenic 40.0%
!! ATGGTGACTTGGTTGGTATT+AGG + chr7_1:10480102-10480121 None:intergenic 40.0%
!! AGAAGAAATGGTGACTTGGT+TGG + chr7_1:10480109-10480128 None:intergenic 40.0%
GTGTAGAAGAAATGGTGACT+TGG + chr7_1:10480113-10480132 None:intergenic 40.0%
! ACGCTTTTATCAATTGGTGG+TGG - chr7_1:10480192-10480211 Msa1009260:CDS 40.0%
!!! CTTTTATCAATTGGTGGTGG+TGG - chr7_1:10480195-10480214 Msa1009260:CDS 40.0%
TGTGCTTTAGTAGAACGTTC+AGG + chr7_1:10480222-10480241 None:intergenic 40.0%
! TATGAACGATTTTCGGCTAC+TGG + chr7_1:10480271-10480290 None:intergenic 40.0%
GCCAGAAATAACAACTTCCA+TGG - chr7_1:10480309-10480328 Msa1009260:CDS 40.0%
!! GCCATGGAAGTTGTTATTTC+TGG + chr7_1:10480313-10480332 None:intergenic 40.0%
GACGTTGAAATGACCAACTT+TGG - chr7_1:10480363-10480382 Msa1009260:CDS 40.0%
TTGGTTTACTCATTACAGCG+TGG - chr7_1:10480382-10480401 Msa1009260:CDS 40.0%
TGTTTGCAACATCTTGACCT+GGG + chr7_1:10480509-10480528 None:intergenic 40.0%
TTGTTTGCAACATCTTGACC+TGG + chr7_1:10480510-10480529 None:intergenic 40.0%
!! AGTTGGGTTTTTCAAAGGAG+CGG + chr7_1:10480604-10480623 None:intergenic 40.0%
!! GAAGGTATCACAAAATGGGT+AGG - chr7_1:10480642-10480661 Msa1009260:CDS 40.0%
ATCACAAAATGGGTAGGGTT+AGG - chr7_1:10480648-10480667 Msa1009260:CDS 40.0%
!! CCAAGTGCAAGTTTGCTTTT+TGG + chr7_1:10480678-10480697 None:intergenic 40.0%
CCAAAAAGCAAACTTGCACT+TGG - chr7_1:10480675-10480694 Msa1009260:CDS 40.0%
TTCAAAGGGACAGATTGGTA+TGG - chr7_1:10480855-10480874 Msa1009260:CDS 40.0%
TTGCTTGACATAAGCAACCT+TGG + chr7_1:10480907-10480926 None:intergenic 40.0%
AATTGGACTCTTTCTCAAGC+AGG - chr7_1:10480972-10480991 Msa1009260:CDS 40.0%
! CAAGAGGAACGAATGCTTTT+TGG + chr7_1:10479926-10479945 None:intergenic 40.0%
ATTGGAGTTGGAGAATCATG+AGG + chr7_1:10479960-10479979 None:intergenic 40.0%
CAGCGTTTGTAGAGGAAAAT+TGG + chr7_1:10479978-10479997 None:intergenic 40.0%
TTTAATGGCAGCGTTTGTAG+AGG + chr7_1:10479986-10480005 None:intergenic 40.0%
TCTACAAACGCTGCCATTAA+AGG - chr7_1:10479985-10480004 Msa1009260:CDS 40.0%
CTGCCATTAAAGGTGGTTAT+TGG - chr7_1:10479995-10480014 Msa1009260:CDS 40.0%
GGTGGTTATTGGTATTCTGA+TGG - chr7_1:10480006-10480025 Msa1009260:CDS 40.0%
GATCAATCTCAGAAACTGCA+AGG + chr7_1:10480035-10480054 None:intergenic 40.0%
CAGCAAATGCACAAAACAAG+TGG + chr7_1:10480071-10480090 None:intergenic 40.0%
! CTTGGTTGGTATTAGGATCA+AGG + chr7_1:10480095-10480114 None:intergenic 40.0%
!! ATGGTGACTTGGTTGGTATT+AGG + chr7_1:10480102-10480121 None:intergenic 40.0%
!! AGAAGAAATGGTGACTTGGT+TGG + chr7_1:10480109-10480128 None:intergenic 40.0%
GTGTAGAAGAAATGGTGACT+TGG + chr7_1:10480113-10480132 None:intergenic 40.0%
! ACGCTTTTATCAATTGGTGG+TGG - chr7_1:10480192-10480211 Msa1009260:CDS 40.0%
!!! CTTTTATCAATTGGTGGTGG+TGG - chr7_1:10480195-10480214 Msa1009260:CDS 40.0%
TGTGCTTTAGTAGAACGTTC+AGG + chr7_1:10480222-10480241 None:intergenic 40.0%
! TATGAACGATTTTCGGCTAC+TGG + chr7_1:10480271-10480290 None:intergenic 40.0%
GCCAGAAATAACAACTTCCA+TGG - chr7_1:10480309-10480328 Msa1009260:CDS 40.0%
!! GCCATGGAAGTTGTTATTTC+TGG + chr7_1:10480313-10480332 None:intergenic 40.0%
GACGTTGAAATGACCAACTT+TGG - chr7_1:10480363-10480382 Msa1009260:CDS 40.0%
TTGGTTTACTCATTACAGCG+TGG - chr7_1:10480382-10480401 Msa1009260:CDS 40.0%
TGTTTGCAACATCTTGACCT+GGG + chr7_1:10480509-10480528 None:intergenic 40.0%
TTGTTTGCAACATCTTGACC+TGG + chr7_1:10480510-10480529 None:intergenic 40.0%
!! AGTTGGGTTTTTCAAAGGAG+CGG + chr7_1:10480604-10480623 None:intergenic 40.0%
!! GAAGGTATCACAAAATGGGT+AGG - chr7_1:10480642-10480661 Msa1009260:CDS 40.0%
ATCACAAAATGGGTAGGGTT+AGG - chr7_1:10480648-10480667 Msa1009260:CDS 40.0%
!! CCAAGTGCAAGTTTGCTTTT+TGG + chr7_1:10480678-10480697 None:intergenic 40.0%
CCAAAAAGCAAACTTGCACT+TGG - chr7_1:10480675-10480694 Msa1009260:CDS 40.0%
TTCAAAGGGACAGATTGGTA+TGG - chr7_1:10480855-10480874 Msa1009260:CDS 40.0%
TTGCTTGACATAAGCAACCT+TGG + chr7_1:10480907-10480926 None:intergenic 40.0%
AATTGGACTCTTTCTCAAGC+AGG - chr7_1:10480972-10480991 Msa1009260:CDS 40.0%
TGAGGAGAGTGGAAATCAAG+AGG + chr7_1:10479942-10479961 None:intergenic 45.0%
TTGGAGAATCATGAGGAGAG+TGG + chr7_1:10479953-10479972 None:intergenic 45.0%
ACAAACGCTGCCATTAAAGG+TGG - chr7_1:10479988-10480007 Msa1009260:CDS 45.0%
AGCTGCGTGTGTAGAAGAAA+TGG + chr7_1:10480121-10480140 None:intergenic 45.0%
GATACAGCCAGTCAAGATCA+AGG + chr7_1:10480335-10480354 None:intergenic 45.0%
GTCATTTCAACGTCTGAGGA+TGG + chr7_1:10480357-10480376 None:intergenic 45.0%
GTTGGTCATTTCAACGTCTG+AGG + chr7_1:10480361-10480380 None:intergenic 45.0%
GCAGCAGATAACAACAGTAC+CGG + chr7_1:10480447-10480466 None:intergenic 45.0%
ACTGTTGTTATCTGCTGCAG+TGG - chr7_1:10480449-10480468 Msa1009260:CDS 45.0%
CTGTTGTTATCTGCTGCAGT+GGG - chr7_1:10480450-10480469 Msa1009260:CDS 45.0%
! ACTCCATTGAAGTACTACCC+AGG - chr7_1:10480489-10480508 Msa1009260:CDS 45.0%
TGACCTGGGTAGTACTTCAA+TGG + chr7_1:10480495-10480514 None:intergenic 45.0%
!! GTTGGGTTTTTCAAAGGAGC+GGG + chr7_1:10480603-10480622 None:intergenic 45.0%
! GCTCCTTTGAAAAACCCAAC+TGG - chr7_1:10480603-10480622 Msa1009260:CDS 45.0%
!! TGGCCAGTTGGGTTTTTCAA+AGG + chr7_1:10480609-10480628 None:intergenic 45.0%
CTGCACTAAATTGGCCAGTT+GGG + chr7_1:10480620-10480639 None:intergenic 45.0%
TCTGCACTAAATTGGCCAGT+TGG + chr7_1:10480621-10480640 None:intergenic 45.0%
GGCCAATTTAGTGCAGATGA+AGG - chr7_1:10480624-10480643 Msa1009260:CDS 45.0%
GCACTTGGTTTACCCTTCTA+TGG - chr7_1:10480690-10480709 Msa1009260:CDS 45.0%
ACTGCTTCAAAGGGACAGAT+TGG - chr7_1:10480850-10480869 Msa1009260:CDS 45.0%
CACTCAGAGTATATCTGCCA+AGG - chr7_1:10480887-10480906 Msa1009260:CDS 45.0%
TGAGGAGAGTGGAAATCAAG+AGG + chr7_1:10479942-10479961 None:intergenic 45.0%
TTGGAGAATCATGAGGAGAG+TGG + chr7_1:10479953-10479972 None:intergenic 45.0%
ACAAACGCTGCCATTAAAGG+TGG - chr7_1:10479988-10480007 Msa1009260:CDS 45.0%
AGCTGCGTGTGTAGAAGAAA+TGG + chr7_1:10480121-10480140 None:intergenic 45.0%
GATACAGCCAGTCAAGATCA+AGG + chr7_1:10480335-10480354 None:intergenic 45.0%
GTCATTTCAACGTCTGAGGA+TGG + chr7_1:10480357-10480376 None:intergenic 45.0%
GTTGGTCATTTCAACGTCTG+AGG + chr7_1:10480361-10480380 None:intergenic 45.0%
GCAGCAGATAACAACAGTAC+CGG + chr7_1:10480447-10480466 None:intergenic 45.0%
ACTGTTGTTATCTGCTGCAG+TGG - chr7_1:10480449-10480468 Msa1009260:CDS 45.0%
CTGTTGTTATCTGCTGCAGT+GGG - chr7_1:10480450-10480469 Msa1009260:CDS 45.0%
! ACTCCATTGAAGTACTACCC+AGG - chr7_1:10480489-10480508 Msa1009260:CDS 45.0%
TGACCTGGGTAGTACTTCAA+TGG + chr7_1:10480495-10480514 None:intergenic 45.0%
!! GTTGGGTTTTTCAAAGGAGC+GGG + chr7_1:10480603-10480622 None:intergenic 45.0%
! GCTCCTTTGAAAAACCCAAC+TGG - chr7_1:10480603-10480622 Msa1009260:CDS 45.0%
!! TGGCCAGTTGGGTTTTTCAA+AGG + chr7_1:10480609-10480628 None:intergenic 45.0%
CTGCACTAAATTGGCCAGTT+GGG + chr7_1:10480620-10480639 None:intergenic 45.0%
TCTGCACTAAATTGGCCAGT+TGG + chr7_1:10480621-10480640 None:intergenic 45.0%
GGCCAATTTAGTGCAGATGA+AGG - chr7_1:10480624-10480643 Msa1009260:CDS 45.0%
GCACTTGGTTTACCCTTCTA+TGG - chr7_1:10480690-10480709 Msa1009260:CDS 45.0%
ACTGCTTCAAAGGGACAGAT+TGG - chr7_1:10480850-10480869 Msa1009260:CDS 45.0%
CACTCAGAGTATATCTGCCA+AGG - chr7_1:10480887-10480906 Msa1009260:CDS 45.0%
!! ACTGGCTTGGCTAGACATGT+TGG + chr7_1:10480253-10480272 None:intergenic 50.0%
!! ACGATTTTCGGCTACTGGCT+TGG + chr7_1:10480266-10480285 None:intergenic 50.0%
! TCCATGGCCTTGATCTTGAC+TGG - chr7_1:10480325-10480344 Msa1009260:CDS 50.0%
!! TAACAACAGTACCGGCTTGC+CGG + chr7_1:10480439-10480458 None:intergenic 50.0%
TTGTTATCTGCTGCAGTGGG+TGG - chr7_1:10480453-10480472 Msa1009260:CDS 50.0%
AGTAAAGCTACGCAGGGACT+AGG - chr7_1:10480756-10480775 Msa1009260:CDS 50.0%
GTAAAGCTACGCAGGGACTA+GGG - chr7_1:10480757-10480776 Msa1009260:CDS 50.0%
TAAAGCTACGCAGGGACTAG+GGG - chr7_1:10480758-10480777 Msa1009260:CDS 50.0%
ACTAGGGGCAGTGAAGTACA+AGG - chr7_1:10480773-10480792 Msa1009260:CDS 50.0%
!! ACTGGCTTGGCTAGACATGT+TGG + chr7_1:10480253-10480272 None:intergenic 50.0%
!! ACGATTTTCGGCTACTGGCT+TGG + chr7_1:10480266-10480285 None:intergenic 50.0%
! TCCATGGCCTTGATCTTGAC+TGG - chr7_1:10480325-10480344 Msa1009260:CDS 50.0%
!! TAACAACAGTACCGGCTTGC+CGG + chr7_1:10480439-10480458 None:intergenic 50.0%
TTGTTATCTGCTGCAGTGGG+TGG - chr7_1:10480453-10480472 Msa1009260:CDS 50.0%
AGTAAAGCTACGCAGGGACT+AGG - chr7_1:10480756-10480775 Msa1009260:CDS 50.0%
GTAAAGCTACGCAGGGACTA+GGG - chr7_1:10480757-10480776 Msa1009260:CDS 50.0%
TAAAGCTACGCAGGGACTAG+GGG - chr7_1:10480758-10480777 Msa1009260:CDS 50.0%
ACTAGGGGCAGTGAAGTACA+AGG - chr7_1:10480773-10480792 Msa1009260:CDS 50.0%
GCCAGTCAAGATCAAGGCCA+TGG + chr7_1:10480329-10480348 None:intergenic 55.0%
TACAGCGTGGAAAGCTGCTG+TGG - chr7_1:10480395-10480414 Msa1009260:CDS 55.0%
GCGGGTGGTTGTGTTTGAGT+TGG + chr7_1:10480585-10480604 None:intergenic 55.0%
!! GGGTTTTTCAAAGGAGCGGG+TGG + chr7_1:10480600-10480619 None:intergenic 55.0%
GCCAGTCAAGATCAAGGCCA+TGG + chr7_1:10480329-10480348 None:intergenic 55.0%
TACAGCGTGGAAAGCTGCTG+TGG - chr7_1:10480395-10480414 Msa1009260:CDS 55.0%
GCGGGTGGTTGTGTTTGAGT+TGG + chr7_1:10480585-10480604 None:intergenic 55.0%
!! GGGTTTTTCAAAGGAGCGGG+TGG + chr7_1:10480600-10480619 None:intergenic 55.0%
GCCGCAGAGTCTAGGAGTTC+CGG - chr7_1:10480417-10480436 Msa1009260:CDS 60.0%
GCCGGAACTCCTAGACTCTG+CGG + chr7_1:10480421-10480440 None:intergenic 60.0%
GTCTAGGAGTTCCGGCAAGC+CGG - chr7_1:10480425-10480444 Msa1009260:CDS 60.0%
GCCGCAGAGTCTAGGAGTTC+CGG - chr7_1:10480417-10480436 Msa1009260:CDS 60.0%
GCCGGAACTCCTAGACTCTG+CGG + chr7_1:10480421-10480440 None:intergenic 60.0%
GTCTAGGAGTTCCGGCAAGC+CGG - chr7_1:10480425-10480444 Msa1009260:CDS 60.0%
CTGCTGTGGCCGCAGAGTCT+AGG - chr7_1:10480409-10480428 Msa1009260:CDS 65.0%
CTGCTGTGGCCGCAGAGTCT+AGG - chr7_1:10480409-10480428 Msa1009260:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 10479913 10481019 10479913 ID=Msa1009260;Name=Msa1009260
chr7_1 mRNA 10479913 10481019 10479913 ID=Msa1009260-mRNA-1;Parent=Msa1009260;Name=Msa1009260-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|368
chr7_1 exon 10479913 10481019 10479913 ID=Msa1009260-mRNA-1:exon:2858;Parent=Msa1009260-mRNA-1
chr7_1 CDS 10479913 10481019 10479913 ID=Msa1009260-mRNA-1:cds;Parent=Msa1009260-mRNA-1
Gene Sequence

>Msa1009260

ATGGCTTACTCCAAAAAGCATTCGTTCCTCTTGATTTCCACTCTCCTCATGATTCTCCAACTCCAATTTTCCTCTACAAACGCTGCCATTAAAGGTGGTTATTGGTATTCTGATGGTGACCTTGCAGTTTCTGAGATTGATCCCTCTTATTTCACCCACTTGTTTTGTGCATTTGCTGACCTTGATCCTAATACCAACCAAGTCACCATTTCTTCTACACACGCAGCTAGTTTCTCAACCTTCACTGAAACCATTCAGTTAAAGAGTAATTCGGTGAAAACGCTTTTATCAATTGGTGGTGGTGGACCTGAACGTTCTACTAAAGCACAAAAATTTGCCAACATGTCTAGCCAAGCCAGTAGCCGAAAATCGTTCATAGATTCTTCAATCCGACTAGCCAGAAATAACAACTTCCATGGCCTTGATCTTGACTGGCTGTATCCATCCTCAGACGTTGAAATGACCAACTTTGGTTTACTCATTACAGCGTGGAAAGCTGCTGTGGCCGCAGAGTCTAGGAGTTCCGGCAAGCCGGTACTGTTGTTATCTGCTGCAGTGGGTGGCTCTGATCAGATAACTCCATTGAAGTACTACCCAGGTCAAGATGTTGCAAACAACTTGGATTGGGTTAATGTAATGACTTATGATCTTTTCACCCCAGATAGTTATCCAACTCAAACACAACCACCCGCTCCTTTGAAAAACCCAACTGGCCAATTTAGTGCAGATGAAGGTATCACAAAATGGGTAGGGTTAGGTGTGCCAAAAAGCAAACTTGCACTTGGTTTACCCTTCTATGGTTACAAATGGAGTTTGGCAGATCCTAATAACCGTAGAATTTTTAGTAAAGCTACGCAGGGACTAGGGGCAGTGAAGTACAAGGATATAAAAAATACTGGGGGGCAGATTGTGTACAACTCCACATATACTCAAAATTACTGCTTCAAAGGGACAGATTGGTATGGATATGATGACACTCAGAGTATATCTGCCAAGGTTGCTTATGTCAAGCAAAATGGATTGTTTGGATATTTTGCTTGGCAAATTGGACAAGACAACAATTGGACTCTTTCTCAAGCAGGTCAGTACATCAGTTCTCCTAATTAA

Protein sequence

>Msa1009260

MAYSKKHSFLLISTLLMILQLQFSSTNAAIKGGYWYSDGDLAVSEIDPSYFTHLFCAFADLDPNTNQVTISSTHAASFSTFTETIQLKSNSVKTLLSIGGGGPERSTKAQKFANMSSQASSRKSFIDSSIRLARNNNFHGLDLDWLYPSSDVEMTNFGLLITAWKAAVAAESRSSGKPVLLLSAAVGGSDQITPLKYYPGQDVANNLDWVNVMTYDLFTPDSYPTQTQPPAPLKNPTGQFSADEGITKWVGLGVPKSKLALGLPFYGYKWSLADPNNRRIFSKATQGLGAVKYKDIKNTGGQIVYNSTYTQNYCFKGTDWYGYDDTQSISAKVAYVKQNGLFGYFAWQIGQDNNWTLSQAGQYISSPN*