Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009260 | KEH36081.1 | 90.582 | 361 | 33 | 1 | 1 | 361 | 1 | 360 | 0.0 | 653 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009260 | sp|O81862|CHIC_ARATH | 48.611 | 360 | 170 | 6 | 11 | 361 | 9 | 362 | 4.09e-111 | 332 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009260 | A0A072V330 | 90.582 | 361 | 33 | 1 | 1 | 361 | 1 | 360 | 0.0 | 653 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0020320 | Msa1009260 | 0.817828 | 2.692644e-52 | -8.615850e-47 |
Msa1009160 | Msa1009260 | 0.806459 | 8.141657e-50 | -8.615850e-47 |
Msa1009240 | Msa1009260 | 0.901345 | 2.942809e-78 | -8.615850e-47 |
Msa1009260 | Msa1050540 | 0.828949 | 6.765056e-55 | -8.615850e-47 |
Msa1009260 | Msa1050640 | 0.884156 | 2.438160e-71 | -8.615850e-47 |
Msa1009260 | Msa1138440 | 0.855780 | 5.013169e-62 | -8.615850e-47 |
Msa0343370 | Msa1009260 | 0.808201 | 3.479414e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009260 | MtrunA17_Chr3g0140461 | 90.305 | 361 | 34 | 1 | 1 | 361 | 26 | 385 | 0.0 | 651 |
Msa1009260 | MtrunA17_Chr3g0140491 | 83.333 | 360 | 58 | 1 | 1 | 360 | 1 | 358 | 0.0 | 612 |
Msa1009260 | MtrunA17_Chr4g0065451 | 82.432 | 148 | 26 | 0 | 213 | 360 | 1 | 148 | 1.15e-87 | 261 |
Msa1009260 | MtrunA17_Chr4g0065461 | 78.873 | 142 | 26 | 2 | 1 | 141 | 1 | 139 | 1.53e-66 | 207 |
Msa1009260 | MtrunA17_Chr4g0065531 | 33.777 | 376 | 223 | 9 | 3 | 364 | 2 | 365 | 4.53e-66 | 213 |
Msa1009260 | MtrunA17_Chr4g0065561 | 35.753 | 372 | 213 | 9 | 9 | 364 | 6 | 367 | 3.95e-65 | 220 |
Msa1009260 | MtrunA17_Chr1g0149821 | 34.188 | 351 | 212 | 5 | 22 | 359 | 32 | 376 | 4.07e-64 | 209 |
Msa1009260 | MtrunA17_Chr4g0065541 | 34.844 | 353 | 208 | 7 | 26 | 365 | 17 | 360 | 9.78e-63 | 213 |
Msa1009260 | MtrunA17_Chr4g0065511 | 34.111 | 343 | 204 | 9 | 30 | 358 | 35 | 369 | 4.19e-56 | 187 |
Msa1009260 | MtrunA17_Chr4g0065501 | 34.582 | 347 | 201 | 8 | 30 | 358 | 37 | 375 | 1.05e-52 | 179 |
Msa1009260 | MtrunA17_Chr4g0066051 | 33.898 | 177 | 113 | 1 | 6 | 182 | 4 | 176 | 3.59e-25 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009260 | AT4G19810.2 | 48.611 | 360 | 170 | 6 | 11 | 361 | 9 | 362 | 4.15e-112 | 332 |
Msa1009260 | AT4G19810.1 | 48.611 | 360 | 170 | 6 | 11 | 361 | 9 | 362 | 4.15e-112 | 332 |
Msa1009260 | AT4G19820.1 | 45.983 | 361 | 180 | 6 | 10 | 361 | 6 | 360 | 5.01e-100 | 301 |
Msa1009260 | AT4G19800.1 | 43.188 | 345 | 182 | 5 | 25 | 361 | 2 | 340 | 1.42e-93 | 285 |
Msa1009260 | AT4G19750.1 | 43.407 | 364 | 178 | 10 | 17 | 363 | 1 | 353 | 8.06e-92 | 280 |
Msa1009260 | AT4G19760.1 | 43.360 | 369 | 177 | 10 | 17 | 361 | 1 | 361 | 3.45e-90 | 276 |
Msa1009260 | AT4G19720.1 | 42.286 | 350 | 175 | 7 | 30 | 361 | 6 | 346 | 1.53e-85 | 263 |
Msa1009260 | AT4G19730.1 | 42.478 | 339 | 166 | 9 | 17 | 333 | 1 | 332 | 3.41e-76 | 238 |
Msa1009260 | AT4G19770.1 | 40.613 | 261 | 142 | 5 | 115 | 367 | 1 | 256 | 8.95e-58 | 189 |
Msa1009260 | AT4G19740.1 | 35.079 | 191 | 110 | 5 | 138 | 318 | 24 | 210 | 1.56e-28 | 110 |
Find 87 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7_1:+10480600 | None:intergenic |
ATTCAAAGCAGTGTTTAATT+AGG | 0.224117 | 7_1:+10479899 | None:intergenic |
ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7_1:+10480912 | None:intergenic |
GTCAAGCAAAATGGATTGTT+TGG | 0.254812 | 7_1:-10479992 | Msa1009260:CDS |
GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7_1:+10480340 | None:intergenic |
TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7_1:-10480925 | Msa1009260:CDS |
GTTGCTTATGTCAAGCAAAA+TGG | 0.266710 | 7_1:-10480001 | Msa1009260:CDS |
GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7_1:-10480220 | Msa1009260:CDS |
CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7_1:+10480935 | None:intergenic |
CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7_1:-10480915 | Msa1009260:CDS |
CAGATGAAGGTATCACAAAA+TGG | 0.294502 | 7_1:-10480273 | Msa1009260:CDS |
ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7_1:+10480207 | None:intergenic |
TACCTTCATCTGCACTAAAT+TGG | 0.339776 | 7_1:+10480284 | None:intergenic |
GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7_1:-10480493 | Msa1009260:CDS |
ATGGTGACTTGGTTGGTATT+AGG | 0.371295 | 7_1:+10480811 | None:intergenic |
CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7_1:-10480203 | Msa1009260:CDS |
CGAATTACTCTTTAACTGAA+TGG | 0.386421 | 7_1:+10480747 | None:intergenic |
CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7_1:+10480293 | None:intergenic |
TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 7_1:+10480474 | None:intergenic |
AGTAAAGCTACGCAGGGACT+AGG | 0.407460 | 7_1:-10480154 | Msa1009260:CDS |
CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7_1:-10480069 | Msa1009260:CDS |
GACGTTGAAATGACCAACTT+TGG | 0.415190 | 7_1:-10480547 | Msa1009260:CDS |
CATTCAGTTAAAGAGTAATT+CGG | 0.416514 | 7_1:-10480746 | Msa1009260:CDS |
TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7_1:+10480691 | None:intergenic |
TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7_1:-10480392 | Msa1009260:CDS |
TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7_1:-10480210 | Msa1009260:CDS |
AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7_1:-10479955 | Msa1009260:CDS |
AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7_1:+10480855 | None:intergenic |
GTAAAGCTACGCAGGGACTA+GGG | 0.458430 | 7_1:-10480153 | Msa1009260:CDS |
CTGCTGTGGCCGCAGAGTCT+AGG | 0.459211 | 7_1:-10480501 | Msa1009260:CDS |
ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7_1:-10480070 | Msa1009260:CDS |
TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7_1:-10480585 | Msa1009260:CDS |
ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7_1:-10480060 | Msa1009260:CDS |
ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7_1:-10480393 | Msa1009260:CDS |
TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7_1:+10480341 | None:intergenic |
CTTGGTTGGTATTAGGATCA+AGG | 0.473190 | 7_1:+10480818 | None:intergenic |
TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7_1:-10480398 | Msa1009260:CDS |
GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7_1:+10480328 | None:intergenic |
ATCACAAAATGGGTAGGGTT+AGG | 0.483616 | 7_1:-10480262 | Msa1009260:CDS |
TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7_1:+10480292 | None:intergenic |
AGATGAAGGTATCACAAAAT+GGG | 0.506219 | 7_1:-10480272 | Msa1009260:CDS |
GTCATTTCAACGTCTGAGGA+TGG | 0.506694 | 7_1:+10480556 | None:intergenic |
TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7_1:+10480418 | None:intergenic |
TAACTGAATGGTTTCAGTGA+AGG | 0.515519 | 7_1:+10480759 | None:intergenic |
TTGGAGAATCATGAGGAGAG+TGG | 0.515988 | 7_1:+10480960 | None:intergenic |
AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7_1:-10479938 | Msa1009260:CDS |
AGCTGCGTGTGTAGAAGAAA+TGG | 0.529170 | 7_1:+10480792 | None:intergenic |
TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7_1:+10480941 | None:intergenic |
TGTAATGAGTAAACCAAAGT+TGG | 0.531161 | 7_1:+10480534 | None:intergenic |
GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 7_1:-10480485 | Msa1009260:CDS |
TTGCTTGACATAAGCAACCT+TGG | 0.542870 | 7_1:+10480006 | None:intergenic |
TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7_1:+10480403 | None:intergenic |
GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7_1:+10480584 | None:intergenic |
AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7_1:+10480608 | None:intergenic |
GAAGGTATCACAAAATGGGT+AGG | 0.554568 | 7_1:-10480268 | Msa1009260:CDS |
TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7_1:-10480457 | Msa1009260:CDS |
CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 7_1:-10480460 | Msa1009260:CDS |
ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7_1:+10480660 | None:intergenic |
GGCCAATTTAGTGCAGATGA+AGG | 0.573534 | 7_1:-10480286 | Msa1009260:CDS |
AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7_1:+10480856 | None:intergenic |
CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 7_1:+10480842 | None:intergenic |
AAGGTATCACAAAATGGGTA+GGG | 0.585197 | 7_1:-10480267 | Msa1009260:CDS |
CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7_1:+10480208 | None:intergenic |
CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7_1:-10480023 | Msa1009260:CDS |
GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7_1:+10480578 | None:intergenic |
GTTGGTCATTTCAACGTCTG+AGG | 0.592628 | 7_1:+10480552 | None:intergenic |
GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 7_1:+10480466 | None:intergenic |
TGAGGAGAGTGGAAATCAAG+AGG | 0.606133 | 7_1:+10480971 | None:intergenic |
TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7_1:-10480055 | Msa1009260:CDS |
TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7_1:+10480927 | None:intergenic |
TACAGCGTGGAAAGCTGCTG+TGG | 0.613884 | 7_1:-10480515 | Msa1009260:CDS |
ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 7_1:-10480461 | Msa1009260:CDS |
GGTGGTTATTGGTATTCTGA+TGG | 0.621200 | 7_1:-10480904 | Msa1009260:CDS |
TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7_1:-10480152 | Msa1009260:CDS |
GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7_1:-10480601 | Msa1009260:CDS |
ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7_1:-10480137 | Msa1009260:CDS |
ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7_1:+10480953 | None:intergenic |
AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 7_1:+10480843 | None:intergenic |
GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7_1:+10480878 | None:intergenic |
TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7_1:+10480404 | None:intergenic |
ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7_1:-10480922 | Msa1009260:CDS |
AGAAGAAATGGTGACTTGGT+TGG | 0.669123 | 7_1:+10480804 | None:intergenic |
GTGTAGAAGAAATGGTGACT+TGG | 0.674829 | 7_1:+10480800 | None:intergenic |
ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7_1:-10480421 | Msa1009260:CDS |
GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7_1:+10480492 | None:intergenic |
TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7_1:+10480342 | None:intergenic |
TTGGTTTACTCATTACAGCG+TGG | 0.729279 | 7_1:-10480528 | Msa1009260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7_1:10480746-10480765 | None:intergenic | 20.0% |
!! | TACAAGGATATAAAAAATAC+TGG | - | chr7_1:10480789-10480808 | Msa1009260:CDS | 20.0% |
!! | ACAAGGATATAAAAAATACT+GGG | - | chr7_1:10480790-10480809 | Msa1009260:CDS | 20.0% |
!!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7_1:10480746-10480765 | None:intergenic | 20.0% |
!! | TACAAGGATATAAAAAATAC+TGG | - | chr7_1:10480789-10480808 | Msa1009260:CDS | 20.0% |
!! | ACAAGGATATAAAAAATACT+GGG | - | chr7_1:10480790-10480809 | Msa1009260:CDS | 20.0% |
! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7_1:10480164-10480183 | Msa1009260:CDS | 25.0% |
!! | AAGAATCTATGAACGATTTT+CGG | + | chr7_1:10480278-10480297 | None:intergenic | 25.0% |
! | CTAAAAATTCTACGGTTATT+AGG | + | chr7_1:10480738-10480757 | None:intergenic | 25.0% |
! | CAAGGATATAAAAAATACTG+GGG | - | chr7_1:10480791-10480810 | Msa1009260:CDS | 25.0% |
! | AAGGATATAAAAAATACTGG+GGG | - | chr7_1:10480792-10480811 | Msa1009260:CDS | 25.0% |
! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7_1:10480164-10480183 | Msa1009260:CDS | 25.0% |
!! | AAGAATCTATGAACGATTTT+CGG | + | chr7_1:10480278-10480297 | None:intergenic | 25.0% |
! | CTAAAAATTCTACGGTTATT+AGG | + | chr7_1:10480738-10480757 | None:intergenic | 25.0% |
! | CAAGGATATAAAAAATACTG+GGG | - | chr7_1:10480791-10480810 | Msa1009260:CDS | 25.0% |
! | AAGGATATAAAAAATACTGG+GGG | - | chr7_1:10480792-10480811 | Msa1009260:CDS | 25.0% |
ATACCAATAACCACCTTTAA+TGG | + | chr7_1:10480001-10480020 | None:intergenic | 30.0% | |
CGAATTACTCTTTAACTGAA+TGG | + | chr7_1:10480166-10480185 | None:intergenic | 30.0% | |
! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7_1:10480186-10480205 | Msa1009260:CDS | 30.0% |
! | AAAACGCTTTTATCAATTGG+TGG | - | chr7_1:10480189-10480208 | Msa1009260:CDS | 30.0% |
TGTAATGAGTAAACCAAAGT+TGG | + | chr7_1:10480379-10480398 | None:intergenic | 30.0% | |
!! | TTTGAGTTGGATAACTATCT+GGG | + | chr7_1:10480572-10480591 | None:intergenic | 30.0% |
!! | AGATGAAGGTATCACAAAAT+GGG | - | chr7_1:10480638-10480657 | Msa1009260:CDS | 30.0% |
!!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7_1:10480749-10480768 | Msa1009260:CDS | 30.0% |
!!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7_1:10480750-10480769 | Msa1009260:CDS | 30.0% |
AGGATATAAAAAATACTGGG+GGG | - | chr7_1:10480793-10480812 | Msa1009260:CDS | 30.0% | |
!! | GCAGTAATTTTGAGTATATG+TGG | + | chr7_1:10480835-10480854 | None:intergenic | 30.0% |
ACTCAAAATTACTGCTTCAA+AGG | - | chr7_1:10480840-10480859 | Msa1009260:CDS | 30.0% | |
CTCAAAATTACTGCTTCAAA+GGG | - | chr7_1:10480841-10480860 | Msa1009260:CDS | 30.0% | |
! | GATTGTTTGGATATTTTGCT+TGG | - | chr7_1:10480931-10480950 | Msa1009260:CDS | 30.0% |
AAATTGGACAAGACAACAAT+TGG | - | chr7_1:10480955-10480974 | Msa1009260:CDS | 30.0% | |
ATACCAATAACCACCTTTAA+TGG | + | chr7_1:10480001-10480020 | None:intergenic | 30.0% | |
CGAATTACTCTTTAACTGAA+TGG | + | chr7_1:10480166-10480185 | None:intergenic | 30.0% | |
! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7_1:10480186-10480205 | Msa1009260:CDS | 30.0% |
! | AAAACGCTTTTATCAATTGG+TGG | - | chr7_1:10480189-10480208 | Msa1009260:CDS | 30.0% |
TGTAATGAGTAAACCAAAGT+TGG | + | chr7_1:10480379-10480398 | None:intergenic | 30.0% | |
!! | TTTGAGTTGGATAACTATCT+GGG | + | chr7_1:10480572-10480591 | None:intergenic | 30.0% |
!! | AGATGAAGGTATCACAAAAT+GGG | - | chr7_1:10480638-10480657 | Msa1009260:CDS | 30.0% |
!!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7_1:10480749-10480768 | Msa1009260:CDS | 30.0% |
!!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7_1:10480750-10480769 | Msa1009260:CDS | 30.0% |
AGGATATAAAAAATACTGGG+GGG | - | chr7_1:10480793-10480812 | Msa1009260:CDS | 30.0% | |
!! | GCAGTAATTTTGAGTATATG+TGG | + | chr7_1:10480835-10480854 | None:intergenic | 30.0% |
ACTCAAAATTACTGCTTCAA+AGG | - | chr7_1:10480840-10480859 | Msa1009260:CDS | 30.0% | |
CTCAAAATTACTGCTTCAAA+GGG | - | chr7_1:10480841-10480860 | Msa1009260:CDS | 30.0% | |
! | GATTGTTTGGATATTTTGCT+TGG | - | chr7_1:10480931-10480950 | Msa1009260:CDS | 30.0% |
AAATTGGACAAGACAACAAT+TGG | - | chr7_1:10480955-10480974 | Msa1009260:CDS | 30.0% | |
TTGTAGAGGAAAATTGGAGT+TGG | + | chr7_1:10479972-10479991 | None:intergenic | 35.0% | |
AACAAGTGGGTGAAATAAGA+GGG | + | chr7_1:10480057-10480076 | None:intergenic | 35.0% | |
AAACAAGTGGGTGAAATAAG+AGG | + | chr7_1:10480058-10480077 | None:intergenic | 35.0% | |
AGCAAATGCACAAAACAAGT+GGG | + | chr7_1:10480070-10480089 | None:intergenic | 35.0% | |
TAACTGAATGGTTTCAGTGA+AGG | + | chr7_1:10480154-10480173 | None:intergenic | 35.0% | |
!! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7_1:10480305-10480324 | None:intergenic | 35.0% |
TCAAGATGTTGCAAACAACT+TGG | - | chr7_1:10480512-10480531 | Msa1009260:CDS | 35.0% | |
ATGTTGCAAACAACTTGGAT+TGG | - | chr7_1:10480517-10480536 | Msa1009260:CDS | 35.0% | |
TGTTGCAAACAACTTGGATT+GGG | - | chr7_1:10480518-10480537 | Msa1009260:CDS | 35.0% | |
!! | TTGAGTTGGATAACTATCTG+GGG | + | chr7_1:10480571-10480590 | None:intergenic | 35.0% |
!! | GTTTGAGTTGGATAACTATC+TGG | + | chr7_1:10480573-10480592 | None:intergenic | 35.0% |
TACCTTCATCTGCACTAAAT+TGG | + | chr7_1:10480629-10480648 | None:intergenic | 35.0% | |
!! | CAGATGAAGGTATCACAAAA+TGG | - | chr7_1:10480637-10480656 | Msa1009260:CDS | 35.0% |
! | AAGGTATCACAAAATGGGTA+GGG | - | chr7_1:10480643-10480662 | Msa1009260:CDS | 35.0% |
TACCCTTCTATGGTTACAAA+TGG | - | chr7_1:10480700-10480719 | Msa1009260:CDS | 35.0% | |
CTCCATTTGTAACCATAGAA+GGG | + | chr7_1:10480705-10480724 | None:intergenic | 35.0% | |
ACTCCATTTGTAACCATAGA+AGG | + | chr7_1:10480706-10480725 | None:intergenic | 35.0% | |
CTATGGTTACAAATGGAGTT+TGG | - | chr7_1:10480707-10480726 | Msa1009260:CDS | 35.0% | |
GTTGCTTATGTCAAGCAAAA+TGG | - | chr7_1:10480909-10480928 | Msa1009260:CDS | 35.0% | |
!! | GTCAAGCAAAATGGATTGTT+TGG | - | chr7_1:10480918-10480937 | Msa1009260:CDS | 35.0% |
! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7_1:10480939-10480958 | Msa1009260:CDS | 35.0% |
TTGTAGAGGAAAATTGGAGT+TGG | + | chr7_1:10479972-10479991 | None:intergenic | 35.0% | |
AACAAGTGGGTGAAATAAGA+GGG | + | chr7_1:10480057-10480076 | None:intergenic | 35.0% | |
AAACAAGTGGGTGAAATAAG+AGG | + | chr7_1:10480058-10480077 | None:intergenic | 35.0% | |
AGCAAATGCACAAAACAAGT+GGG | + | chr7_1:10480070-10480089 | None:intergenic | 35.0% | |
TAACTGAATGGTTTCAGTGA+AGG | + | chr7_1:10480154-10480173 | None:intergenic | 35.0% | |
!! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7_1:10480305-10480324 | None:intergenic | 35.0% |
TCAAGATGTTGCAAACAACT+TGG | - | chr7_1:10480512-10480531 | Msa1009260:CDS | 35.0% | |
ATGTTGCAAACAACTTGGAT+TGG | - | chr7_1:10480517-10480536 | Msa1009260:CDS | 35.0% | |
TGTTGCAAACAACTTGGATT+GGG | - | chr7_1:10480518-10480537 | Msa1009260:CDS | 35.0% | |
!! | TTGAGTTGGATAACTATCTG+GGG | + | chr7_1:10480571-10480590 | None:intergenic | 35.0% |
!! | GTTTGAGTTGGATAACTATC+TGG | + | chr7_1:10480573-10480592 | None:intergenic | 35.0% |
TACCTTCATCTGCACTAAAT+TGG | + | chr7_1:10480629-10480648 | None:intergenic | 35.0% | |
!! | CAGATGAAGGTATCACAAAA+TGG | - | chr7_1:10480637-10480656 | Msa1009260:CDS | 35.0% |
! | AAGGTATCACAAAATGGGTA+GGG | - | chr7_1:10480643-10480662 | Msa1009260:CDS | 35.0% |
TACCCTTCTATGGTTACAAA+TGG | - | chr7_1:10480700-10480719 | Msa1009260:CDS | 35.0% | |
CTCCATTTGTAACCATAGAA+GGG | + | chr7_1:10480705-10480724 | None:intergenic | 35.0% | |
ACTCCATTTGTAACCATAGA+AGG | + | chr7_1:10480706-10480725 | None:intergenic | 35.0% | |
CTATGGTTACAAATGGAGTT+TGG | - | chr7_1:10480707-10480726 | Msa1009260:CDS | 35.0% | |
GTTGCTTATGTCAAGCAAAA+TGG | - | chr7_1:10480909-10480928 | Msa1009260:CDS | 35.0% | |
!! | GTCAAGCAAAATGGATTGTT+TGG | - | chr7_1:10480918-10480937 | Msa1009260:CDS | 35.0% |
! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7_1:10480939-10480958 | Msa1009260:CDS | 35.0% |
! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7_1:10479926-10479945 | None:intergenic | 40.0% |
ATTGGAGTTGGAGAATCATG+AGG | + | chr7_1:10479960-10479979 | None:intergenic | 40.0% | |
CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7_1:10479978-10479997 | None:intergenic | 40.0% | |
TTTAATGGCAGCGTTTGTAG+AGG | + | chr7_1:10479986-10480005 | None:intergenic | 40.0% | |
TCTACAAACGCTGCCATTAA+AGG | - | chr7_1:10479985-10480004 | Msa1009260:CDS | 40.0% | |
CTGCCATTAAAGGTGGTTAT+TGG | - | chr7_1:10479995-10480014 | Msa1009260:CDS | 40.0% | |
GGTGGTTATTGGTATTCTGA+TGG | - | chr7_1:10480006-10480025 | Msa1009260:CDS | 40.0% | |
GATCAATCTCAGAAACTGCA+AGG | + | chr7_1:10480035-10480054 | None:intergenic | 40.0% | |
CAGCAAATGCACAAAACAAG+TGG | + | chr7_1:10480071-10480090 | None:intergenic | 40.0% | |
! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7_1:10480095-10480114 | None:intergenic | 40.0% |
!! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7_1:10480102-10480121 | None:intergenic | 40.0% |
!! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7_1:10480109-10480128 | None:intergenic | 40.0% |
GTGTAGAAGAAATGGTGACT+TGG | + | chr7_1:10480113-10480132 | None:intergenic | 40.0% | |
! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7_1:10480192-10480211 | Msa1009260:CDS | 40.0% |
!!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7_1:10480195-10480214 | Msa1009260:CDS | 40.0% |
TGTGCTTTAGTAGAACGTTC+AGG | + | chr7_1:10480222-10480241 | None:intergenic | 40.0% | |
! | TATGAACGATTTTCGGCTAC+TGG | + | chr7_1:10480271-10480290 | None:intergenic | 40.0% |
GCCAGAAATAACAACTTCCA+TGG | - | chr7_1:10480309-10480328 | Msa1009260:CDS | 40.0% | |
!! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7_1:10480313-10480332 | None:intergenic | 40.0% |
GACGTTGAAATGACCAACTT+TGG | - | chr7_1:10480363-10480382 | Msa1009260:CDS | 40.0% | |
TTGGTTTACTCATTACAGCG+TGG | - | chr7_1:10480382-10480401 | Msa1009260:CDS | 40.0% | |
TGTTTGCAACATCTTGACCT+GGG | + | chr7_1:10480509-10480528 | None:intergenic | 40.0% | |
TTGTTTGCAACATCTTGACC+TGG | + | chr7_1:10480510-10480529 | None:intergenic | 40.0% | |
!! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7_1:10480604-10480623 | None:intergenic | 40.0% |
!! | GAAGGTATCACAAAATGGGT+AGG | - | chr7_1:10480642-10480661 | Msa1009260:CDS | 40.0% |
ATCACAAAATGGGTAGGGTT+AGG | - | chr7_1:10480648-10480667 | Msa1009260:CDS | 40.0% | |
!! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7_1:10480678-10480697 | None:intergenic | 40.0% |
CCAAAAAGCAAACTTGCACT+TGG | - | chr7_1:10480675-10480694 | Msa1009260:CDS | 40.0% | |
TTCAAAGGGACAGATTGGTA+TGG | - | chr7_1:10480855-10480874 | Msa1009260:CDS | 40.0% | |
TTGCTTGACATAAGCAACCT+TGG | + | chr7_1:10480907-10480926 | None:intergenic | 40.0% | |
AATTGGACTCTTTCTCAAGC+AGG | - | chr7_1:10480972-10480991 | Msa1009260:CDS | 40.0% | |
! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7_1:10479926-10479945 | None:intergenic | 40.0% |
ATTGGAGTTGGAGAATCATG+AGG | + | chr7_1:10479960-10479979 | None:intergenic | 40.0% | |
CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7_1:10479978-10479997 | None:intergenic | 40.0% | |
TTTAATGGCAGCGTTTGTAG+AGG | + | chr7_1:10479986-10480005 | None:intergenic | 40.0% | |
TCTACAAACGCTGCCATTAA+AGG | - | chr7_1:10479985-10480004 | Msa1009260:CDS | 40.0% | |
CTGCCATTAAAGGTGGTTAT+TGG | - | chr7_1:10479995-10480014 | Msa1009260:CDS | 40.0% | |
GGTGGTTATTGGTATTCTGA+TGG | - | chr7_1:10480006-10480025 | Msa1009260:CDS | 40.0% | |
GATCAATCTCAGAAACTGCA+AGG | + | chr7_1:10480035-10480054 | None:intergenic | 40.0% | |
CAGCAAATGCACAAAACAAG+TGG | + | chr7_1:10480071-10480090 | None:intergenic | 40.0% | |
! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7_1:10480095-10480114 | None:intergenic | 40.0% |
!! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7_1:10480102-10480121 | None:intergenic | 40.0% |
!! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7_1:10480109-10480128 | None:intergenic | 40.0% |
GTGTAGAAGAAATGGTGACT+TGG | + | chr7_1:10480113-10480132 | None:intergenic | 40.0% | |
! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7_1:10480192-10480211 | Msa1009260:CDS | 40.0% |
!!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7_1:10480195-10480214 | Msa1009260:CDS | 40.0% |
TGTGCTTTAGTAGAACGTTC+AGG | + | chr7_1:10480222-10480241 | None:intergenic | 40.0% | |
! | TATGAACGATTTTCGGCTAC+TGG | + | chr7_1:10480271-10480290 | None:intergenic | 40.0% |
GCCAGAAATAACAACTTCCA+TGG | - | chr7_1:10480309-10480328 | Msa1009260:CDS | 40.0% | |
!! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7_1:10480313-10480332 | None:intergenic | 40.0% |
GACGTTGAAATGACCAACTT+TGG | - | chr7_1:10480363-10480382 | Msa1009260:CDS | 40.0% | |
TTGGTTTACTCATTACAGCG+TGG | - | chr7_1:10480382-10480401 | Msa1009260:CDS | 40.0% | |
TGTTTGCAACATCTTGACCT+GGG | + | chr7_1:10480509-10480528 | None:intergenic | 40.0% | |
TTGTTTGCAACATCTTGACC+TGG | + | chr7_1:10480510-10480529 | None:intergenic | 40.0% | |
!! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7_1:10480604-10480623 | None:intergenic | 40.0% |
!! | GAAGGTATCACAAAATGGGT+AGG | - | chr7_1:10480642-10480661 | Msa1009260:CDS | 40.0% |
ATCACAAAATGGGTAGGGTT+AGG | - | chr7_1:10480648-10480667 | Msa1009260:CDS | 40.0% | |
!! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7_1:10480678-10480697 | None:intergenic | 40.0% |
CCAAAAAGCAAACTTGCACT+TGG | - | chr7_1:10480675-10480694 | Msa1009260:CDS | 40.0% | |
TTCAAAGGGACAGATTGGTA+TGG | - | chr7_1:10480855-10480874 | Msa1009260:CDS | 40.0% | |
TTGCTTGACATAAGCAACCT+TGG | + | chr7_1:10480907-10480926 | None:intergenic | 40.0% | |
AATTGGACTCTTTCTCAAGC+AGG | - | chr7_1:10480972-10480991 | Msa1009260:CDS | 40.0% | |
TGAGGAGAGTGGAAATCAAG+AGG | + | chr7_1:10479942-10479961 | None:intergenic | 45.0% | |
TTGGAGAATCATGAGGAGAG+TGG | + | chr7_1:10479953-10479972 | None:intergenic | 45.0% | |
ACAAACGCTGCCATTAAAGG+TGG | - | chr7_1:10479988-10480007 | Msa1009260:CDS | 45.0% | |
AGCTGCGTGTGTAGAAGAAA+TGG | + | chr7_1:10480121-10480140 | None:intergenic | 45.0% | |
GATACAGCCAGTCAAGATCA+AGG | + | chr7_1:10480335-10480354 | None:intergenic | 45.0% | |
GTCATTTCAACGTCTGAGGA+TGG | + | chr7_1:10480357-10480376 | None:intergenic | 45.0% | |
GTTGGTCATTTCAACGTCTG+AGG | + | chr7_1:10480361-10480380 | None:intergenic | 45.0% | |
GCAGCAGATAACAACAGTAC+CGG | + | chr7_1:10480447-10480466 | None:intergenic | 45.0% | |
ACTGTTGTTATCTGCTGCAG+TGG | - | chr7_1:10480449-10480468 | Msa1009260:CDS | 45.0% | |
CTGTTGTTATCTGCTGCAGT+GGG | - | chr7_1:10480450-10480469 | Msa1009260:CDS | 45.0% | |
! | ACTCCATTGAAGTACTACCC+AGG | - | chr7_1:10480489-10480508 | Msa1009260:CDS | 45.0% |
TGACCTGGGTAGTACTTCAA+TGG | + | chr7_1:10480495-10480514 | None:intergenic | 45.0% | |
!! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7_1:10480603-10480622 | None:intergenic | 45.0% |
! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7_1:10480603-10480622 | Msa1009260:CDS | 45.0% |
!! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7_1:10480609-10480628 | None:intergenic | 45.0% |
CTGCACTAAATTGGCCAGTT+GGG | + | chr7_1:10480620-10480639 | None:intergenic | 45.0% | |
TCTGCACTAAATTGGCCAGT+TGG | + | chr7_1:10480621-10480640 | None:intergenic | 45.0% | |
GGCCAATTTAGTGCAGATGA+AGG | - | chr7_1:10480624-10480643 | Msa1009260:CDS | 45.0% | |
GCACTTGGTTTACCCTTCTA+TGG | - | chr7_1:10480690-10480709 | Msa1009260:CDS | 45.0% | |
ACTGCTTCAAAGGGACAGAT+TGG | - | chr7_1:10480850-10480869 | Msa1009260:CDS | 45.0% | |
CACTCAGAGTATATCTGCCA+AGG | - | chr7_1:10480887-10480906 | Msa1009260:CDS | 45.0% | |
TGAGGAGAGTGGAAATCAAG+AGG | + | chr7_1:10479942-10479961 | None:intergenic | 45.0% | |
TTGGAGAATCATGAGGAGAG+TGG | + | chr7_1:10479953-10479972 | None:intergenic | 45.0% | |
ACAAACGCTGCCATTAAAGG+TGG | - | chr7_1:10479988-10480007 | Msa1009260:CDS | 45.0% | |
AGCTGCGTGTGTAGAAGAAA+TGG | + | chr7_1:10480121-10480140 | None:intergenic | 45.0% | |
GATACAGCCAGTCAAGATCA+AGG | + | chr7_1:10480335-10480354 | None:intergenic | 45.0% | |
GTCATTTCAACGTCTGAGGA+TGG | + | chr7_1:10480357-10480376 | None:intergenic | 45.0% | |
GTTGGTCATTTCAACGTCTG+AGG | + | chr7_1:10480361-10480380 | None:intergenic | 45.0% | |
GCAGCAGATAACAACAGTAC+CGG | + | chr7_1:10480447-10480466 | None:intergenic | 45.0% | |
ACTGTTGTTATCTGCTGCAG+TGG | - | chr7_1:10480449-10480468 | Msa1009260:CDS | 45.0% | |
CTGTTGTTATCTGCTGCAGT+GGG | - | chr7_1:10480450-10480469 | Msa1009260:CDS | 45.0% | |
! | ACTCCATTGAAGTACTACCC+AGG | - | chr7_1:10480489-10480508 | Msa1009260:CDS | 45.0% |
TGACCTGGGTAGTACTTCAA+TGG | + | chr7_1:10480495-10480514 | None:intergenic | 45.0% | |
!! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7_1:10480603-10480622 | None:intergenic | 45.0% |
! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7_1:10480603-10480622 | Msa1009260:CDS | 45.0% |
!! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7_1:10480609-10480628 | None:intergenic | 45.0% |
CTGCACTAAATTGGCCAGTT+GGG | + | chr7_1:10480620-10480639 | None:intergenic | 45.0% | |
TCTGCACTAAATTGGCCAGT+TGG | + | chr7_1:10480621-10480640 | None:intergenic | 45.0% | |
GGCCAATTTAGTGCAGATGA+AGG | - | chr7_1:10480624-10480643 | Msa1009260:CDS | 45.0% | |
GCACTTGGTTTACCCTTCTA+TGG | - | chr7_1:10480690-10480709 | Msa1009260:CDS | 45.0% | |
ACTGCTTCAAAGGGACAGAT+TGG | - | chr7_1:10480850-10480869 | Msa1009260:CDS | 45.0% | |
CACTCAGAGTATATCTGCCA+AGG | - | chr7_1:10480887-10480906 | Msa1009260:CDS | 45.0% | |
!! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7_1:10480253-10480272 | None:intergenic | 50.0% |
!! | ACGATTTTCGGCTACTGGCT+TGG | + | chr7_1:10480266-10480285 | None:intergenic | 50.0% |
! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7_1:10480325-10480344 | Msa1009260:CDS | 50.0% |
!! | TAACAACAGTACCGGCTTGC+CGG | + | chr7_1:10480439-10480458 | None:intergenic | 50.0% |
TTGTTATCTGCTGCAGTGGG+TGG | - | chr7_1:10480453-10480472 | Msa1009260:CDS | 50.0% | |
AGTAAAGCTACGCAGGGACT+AGG | - | chr7_1:10480756-10480775 | Msa1009260:CDS | 50.0% | |
GTAAAGCTACGCAGGGACTA+GGG | - | chr7_1:10480757-10480776 | Msa1009260:CDS | 50.0% | |
TAAAGCTACGCAGGGACTAG+GGG | - | chr7_1:10480758-10480777 | Msa1009260:CDS | 50.0% | |
ACTAGGGGCAGTGAAGTACA+AGG | - | chr7_1:10480773-10480792 | Msa1009260:CDS | 50.0% | |
!! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7_1:10480253-10480272 | None:intergenic | 50.0% |
!! | ACGATTTTCGGCTACTGGCT+TGG | + | chr7_1:10480266-10480285 | None:intergenic | 50.0% |
! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7_1:10480325-10480344 | Msa1009260:CDS | 50.0% |
!! | TAACAACAGTACCGGCTTGC+CGG | + | chr7_1:10480439-10480458 | None:intergenic | 50.0% |
TTGTTATCTGCTGCAGTGGG+TGG | - | chr7_1:10480453-10480472 | Msa1009260:CDS | 50.0% | |
AGTAAAGCTACGCAGGGACT+AGG | - | chr7_1:10480756-10480775 | Msa1009260:CDS | 50.0% | |
GTAAAGCTACGCAGGGACTA+GGG | - | chr7_1:10480757-10480776 | Msa1009260:CDS | 50.0% | |
TAAAGCTACGCAGGGACTAG+GGG | - | chr7_1:10480758-10480777 | Msa1009260:CDS | 50.0% | |
ACTAGGGGCAGTGAAGTACA+AGG | - | chr7_1:10480773-10480792 | Msa1009260:CDS | 50.0% | |
GCCAGTCAAGATCAAGGCCA+TGG | + | chr7_1:10480329-10480348 | None:intergenic | 55.0% | |
TACAGCGTGGAAAGCTGCTG+TGG | - | chr7_1:10480395-10480414 | Msa1009260:CDS | 55.0% | |
GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7_1:10480585-10480604 | None:intergenic | 55.0% | |
!! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7_1:10480600-10480619 | None:intergenic | 55.0% |
GCCAGTCAAGATCAAGGCCA+TGG | + | chr7_1:10480329-10480348 | None:intergenic | 55.0% | |
TACAGCGTGGAAAGCTGCTG+TGG | - | chr7_1:10480395-10480414 | Msa1009260:CDS | 55.0% | |
GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7_1:10480585-10480604 | None:intergenic | 55.0% | |
!! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7_1:10480600-10480619 | None:intergenic | 55.0% |
GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7_1:10480417-10480436 | Msa1009260:CDS | 60.0% | |
GCCGGAACTCCTAGACTCTG+CGG | + | chr7_1:10480421-10480440 | None:intergenic | 60.0% | |
GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7_1:10480425-10480444 | Msa1009260:CDS | 60.0% | |
GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7_1:10480417-10480436 | Msa1009260:CDS | 60.0% | |
GCCGGAACTCCTAGACTCTG+CGG | + | chr7_1:10480421-10480440 | None:intergenic | 60.0% | |
GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7_1:10480425-10480444 | Msa1009260:CDS | 60.0% | |
CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7_1:10480409-10480428 | Msa1009260:CDS | 65.0% | |
CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7_1:10480409-10480428 | Msa1009260:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 10479913 | 10481019 | 10479913 | ID=Msa1009260;Name=Msa1009260 |
chr7_1 | mRNA | 10479913 | 10481019 | 10479913 | ID=Msa1009260-mRNA-1;Parent=Msa1009260;Name=Msa1009260-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|368 |
chr7_1 | exon | 10479913 | 10481019 | 10479913 | ID=Msa1009260-mRNA-1:exon:2858;Parent=Msa1009260-mRNA-1 |
chr7_1 | CDS | 10479913 | 10481019 | 10479913 | ID=Msa1009260-mRNA-1:cds;Parent=Msa1009260-mRNA-1 |
Gene Sequence |
Protein sequence |