AlfalfaGEDB | Msa1009260

M. sativa cultivar zhongmu-4 / Msa1009260

KEGG: K01183
GO: GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724
PFAM: PF00704.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009260	KEH36081.1	90.582	361	33	1	1	361	1	360	0.0	653

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009260	sp\|O81862\|CHIC_ARATH	48.611	360	170	6	11	361	9	362	4.09e-111	332

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009260	A0A072V330	90.582	361	33	1	1	361	1	360	0.0	653

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020320	Msa1009260	0.817828	2.692644e-52	-8.615850e-47
Msa0343370	Msa1009260	0.808201	3.479414e-50	-8.615850e-47
Msa1009160	Msa1009260	0.806459	8.141657e-50	-8.615850e-47
Msa1009240	Msa1009260	0.901345	2.942809e-78	-8.615850e-47
Msa1009260	Msa1050540	0.828949	6.765056e-55	-8.615850e-47
Msa1009260	Msa1050640	0.884156	2.438160e-71	-8.615850e-47
Msa1009260	Msa1138440	0.855780	5.013169e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009260	MtrunA17_Chr3g0140461	90.305	361	34	1	1	361	26	385	0.0	651
Msa1009260	MtrunA17_Chr3g0140491	83.333	360	58	1	1	360	1	358	0.0	612
Msa1009260	MtrunA17_Chr4g0065451	82.432	148	26	0	213	360	1	148	1.15e-87	261
Msa1009260	MtrunA17_Chr4g0065461	78.873	142	26	2	1	141	1	139	1.53e-66	207
Msa1009260	MtrunA17_Chr4g0065531	33.777	376	223	9	3	364	2	365	4.53e-66	213
Msa1009260	MtrunA17_Chr4g0065561	35.753	372	213	9	9	364	6	367	3.95e-65	220
Msa1009260	MtrunA17_Chr1g0149821	34.188	351	212	5	22	359	32	376	4.07e-64	209
Msa1009260	MtrunA17_Chr4g0065541	34.844	353	208	7	26	365	17	360	9.78e-63	213
Msa1009260	MtrunA17_Chr4g0065511	34.111	343	204	9	30	358	35	369	4.19e-56	187
Msa1009260	MtrunA17_Chr4g0065501	34.582	347	201	8	30	358	37	375	1.05e-52	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009260	AT4G19810.2	48.611	360	170	6	11	361	9	362	4.15e-112	332
Msa1009260	AT4G19810.1	48.611	360	170	6	11	361	9	362	4.15e-112	332
Msa1009260	AT4G19820.1	45.983	361	180	6	10	361	6	360	5.01e-100	301
Msa1009260	AT4G19800.1	43.188	345	182	5	25	361	2	340	1.42e-93	285
Msa1009260	AT4G19750.1	43.407	364	178	10	17	363	1	353	8.06e-92	280
Msa1009260	AT4G19760.1	43.360	369	177	10	17	361	1	361	3.45e-90	276
Msa1009260	AT4G19720.1	42.286	350	175	7	30	361	6	346	1.53e-85	263
Msa1009260	AT4G19730.1	42.478	339	166	9	17	333	1	332	3.41e-76	238
Msa1009260	AT4G19770.1	40.613	261	142	5	115	367	1	256	8.95e-58	189
Msa1009260	AT4G19740.1	35.079	191	110	5	138	318	24	210	1.56e-28	110

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Find 87 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTGGGTGAAATAAG+AGG	0.449767	7_1:+10480855	None:intergenic
AAATTGGACAAGACAACAAT+TGG	0.443469	7_1:-10479955	Msa1009260:CDS
AACAAGTGGGTGAAATAAGA+GGG	0.575691	7_1:+10480856	None:intergenic
AAGGTATCACAAAATGGGTA+GGG	0.585197	7_1:-10480267	Msa1009260:CDS
AATTGGACTCTTTCTCAAGC+AGG	0.528807	7_1:-10479938	Msa1009260:CDS
ACAAACGCTGCCATTAAAGG+TGG	0.664680	7_1:-10480922	Msa1009260:CDS
ACTAGGGGCAGTGAAGTACA+AGG	0.628451	7_1:-10480137	Msa1009260:CDS
ACTCAAAATTACTGCTTCAA+AGG	0.460609	7_1:-10480070	Msa1009260:CDS
ACTCCATTGAAGTACTACCC+AGG	0.697331	7_1:-10480421	Msa1009260:CDS
ACTCCATTTGTAACCATAGA+AGG	0.300520	7_1:+10480207	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACCAATAACCACCTTTAA+TGG	+	chr7_1:10480001-10480020	None:intergenic	30.0%
CGAATTACTCTTTAACTGAA+TGG	+	chr7_1:10480166-10480185	None:intergenic	30.0%
TGTAATGAGTAAACCAAAGT+TGG	+	chr7_1:10480379-10480398	None:intergenic	30.0%
AGGATATAAAAAATACTGGG+GGG	-	chr7_1:10480793-10480812	Msa1009260:CDS	30.0%
ACTCAAAATTACTGCTTCAA+AGG	-	chr7_1:10480840-10480859	Msa1009260:CDS	30.0%
CTCAAAATTACTGCTTCAAA+GGG	-	chr7_1:10480841-10480860	Msa1009260:CDS	30.0%
AAATTGGACAAGACAACAAT+TGG	-	chr7_1:10480955-10480974	Msa1009260:CDS	30.0%
ATACCAATAACCACCTTTAA+TGG	+	chr7_1:10480001-10480020	None:intergenic	30.0%
CGAATTACTCTTTAACTGAA+TGG	+	chr7_1:10480166-10480185	None:intergenic	30.0%
TGTAATGAGTAAACCAAAGT+TGG	+	chr7_1:10480379-10480398	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	10479913	10481019	10479913	ID=Msa1009260;Name=Msa1009260
chr7_1	mRNA	10479913	10481019	10479913	ID=Msa1009260-mRNA-1;Parent=Msa1009260;Name=Msa1009260-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|368
chr7_1	exon	10479913	10481019	10479913	ID=Msa1009260-mRNA-1:exon:2858;Parent=Msa1009260-mRNA-1
chr7_1	CDS	10479913	10481019	10479913	ID=Msa1009260-mRNA-1:cds;Parent=Msa1009260-mRNA-1

Gene Sequence

>Msa1009260

ATGGCTTACTCCAAAAAGCATTCGTTCCTCTTGATTTCCACTCTCCTCATGATTCTCCAACTCCAATTTTCCTCTACAAACGCTGCCATTAAAGGTGGTTATTGGTATTCTGATGGTGACCTTGCAGTTTCTGAGATTGATCCCTCTTATTTCACCCACTTGTTTTGTGCATTTGCTGACCTTGATCCTAATACCAACCAAGTCACCATTTCTTCTACACACGCAGCTAGTTTCTCAACCTTCACTGAAACCATTCAGTTAAAGAGTAATTCGGTGAAAACGCTTTTATCAATTGGTGGTGGTGGACCTGAACGTTCTACTAAAGCACAAAAATTTGCCAACATGTCTAGCCAAGCCAGTAGCCGAAAATCGTTCATAGATTCTTCAATCCGACTAGCCAGAAATAACAACTTCCATGGCCTTGATCTTGACTGGCTGTATCCATCCTCAGACGTTGAAATGACCAACTTTGGTTTACTCATTACAGCGTGGAAAGCTGCTGTGGCCGCAGAGTCTAGGAGTTCCGGCAAGCCGGTACTGTTGTTATCTGCTGCAGTGGGTGGCTCTGATCAGATAACTCCATTGAAGTACTACCCAGGTCAAGATGTTGCAAACAACTTGGATTGGGTTAATGTAATGACTTATGATCTTTTCACCCCAGATAGTTATCCAACTCAAACACAACCACCCGCTCCTTTGAAAAACCCAACTGGCCAATTTAGTGCAGATGAAGGTATCACAAAATGGGTAGGGTTAGGTGTGCCAAAAAGCAAACTTGCACTTGGTTTACCCTTCTATGGTTACAAATGGAGTTTGGCAGATCCTAATAACCGTAGAATTTTTAGTAAAGCTACGCAGGGACTAGGGGCAGTGAAGTACAAGGATATAAAAAATACTGGGGGGCAGATTGTGTACAACTCCACATATACTCAAAATTACTGCTTCAAAGGGACAGATTGGTATGGATATGATGACACTCAGAGTATATCTGCCAAGGTTGCTTATGTCAAGCAAAATGGATTGTTTGGATATTTTGCTTGGCAAATTGGACAAGACAACAATTGGACTCTTTCTCAAGCAGGTCAGTACATCAGTTCTCCTAATTAA

Protein sequence

>Msa1009260

MAYSKKHSFLLISTLLMILQLQFSSTNAAIKGGYWYSDGDLAVSEIDPSYFTHLFCAFADLDPNTNQVTISSTHAASFSTFTETIQLKSNSVKTLLSIGGGGPERSTKAQKFANMSSQASSRKSFIDSSIRLARNNNFHGLDLDWLYPSSDVEMTNFGLLITAWKAAVAAESRSSGKPVLLLSAAVGGSDQITPLKYYPGQDVANNLDWVNVMTYDLFTPDSYPTQTQPPAPLKNPTGQFSADEGITKWVGLGVPKSKLALGLPFYGYKWSLADPNNRRIFSKATQGLGAVKYKDIKNTGGQIVYNSTYTQNYCFKGTDWYGYDDTQSISAKVAYVKQNGLFGYFAWQIGQDNNWTLSQAGQYISSPN*