Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138440 | KEH36081.1 | 90.305 | 361 | 34 | 1 | 1 | 361 | 1 | 360 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138440 | sp|O81862|CHIC_ARATH | 49.722 | 360 | 166 | 6 | 11 | 361 | 9 | 362 | 1.23e-113 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138440 | A0A072V330 | 90.305 | 361 | 34 | 1 | 1 | 361 | 1 | 360 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa1138440 | 0.827574 | 1.451531e-54 | -8.615850e-47 |
| Msa0020320 | Msa1138440 | 0.843889 | 1.061424e-58 | -8.615850e-47 |
| Msa0034100 | Msa1138440 | 0.801095 | 1.058563e-48 | -8.615850e-47 |
| Msa0040780 | Msa1138440 | 0.826446 | 2.701175e-54 | -8.615850e-47 |
| Msa0043460 | Msa1138440 | 0.818471 | 1.926987e-52 | -8.615850e-47 |
| Msa0069480 | Msa1138440 | -0.800575 | 1.351483e-48 | -8.615850e-47 |
| Msa0072830 | Msa1138440 | 0.844408 | 7.701232e-59 | -8.615850e-47 |
| Msa0072860 | Msa1138440 | 0.840053 | 1.096046e-57 | -8.615850e-47 |
| Msa0080810 | Msa1138440 | 0.807754 | 4.331312e-50 | -8.615850e-47 |
| Msa0089010 | Msa1138440 | 0.872218 | 3.766117e-67 | -8.615850e-47 |
| Msa0091470 | Msa1138440 | 0.820065 | 8.352242e-53 | -8.615850e-47 |
| Msa0104360 | Msa1138440 | 0.813096 | 3.042784e-51 | -8.615850e-47 |
| Msa0104390 | Msa1138440 | 0.838849 | 2.251488e-57 | -8.615850e-47 |
| Msa0114700 | Msa1138440 | 0.807026 | 6.179291e-50 | -8.615850e-47 |
| Msa0116470 | Msa1138440 | 0.824644 | 7.218615e-54 | -8.615850e-47 |
| Msa0116510 | Msa1138440 | 0.834268 | 3.307408e-56 | -8.615850e-47 |
| Msa0120320 | Msa1138440 | 0.813268 | 2.789591e-51 | -8.615850e-47 |
| Msa0615430 | Msa1138440 | 0.812761 | 3.603980e-51 | -8.615850e-47 |
| Msa0627050 | Msa1138440 | 0.806989 | 6.293240e-50 | -8.615850e-47 |
| Msa0629960 | Msa1138440 | 0.814989 | 1.163041e-51 | -8.615850e-47 |
| Msa0630010 | Msa1138440 | 0.837996 | 3.738234e-57 | -8.615850e-47 |
| Msa0675010 | Msa1138440 | 0.809940 | 1.476024e-50 | -8.615850e-47 |
| Msa0698480 | Msa1138440 | 0.817022 | 4.090994e-52 | -8.615850e-47 |
| Msa0698650 | Msa1138440 | 0.815735 | 7.940153e-52 | -8.615850e-47 |
| Msa0706130 | Msa1138440 | 0.819107 | 1.381235e-52 | -8.615850e-47 |
| Msa0749150 | Msa1138440 | 0.824714 | 6.949090e-54 | -8.615850e-47 |
| Msa0792880 | Msa1138440 | 0.824140 | 9.483272e-54 | -8.615850e-47 |
| Msa0797980 | Msa1138440 | 0.800593 | 1.340151e-48 | -8.615850e-47 |
| Msa0803530 | Msa1138440 | 0.817160 | 3.809033e-52 | -8.615850e-47 |
| Msa0813030 | Msa1138440 | 0.850619 | 1.510760e-60 | -8.615850e-47 |
| Msa0820350 | Msa1138440 | 0.814817 | 1.269830e-51 | -8.615850e-47 |
| Msa0821030 | Msa1138440 | 0.805940 | 1.047128e-49 | -8.615850e-47 |
| Msa0828900 | Msa1138440 | 0.823565 | 1.293841e-53 | -8.615850e-47 |
| Msa0131460 | Msa1138440 | -0.804808 | 1.807992e-49 | -8.615850e-47 |
| Msa0143280 | Msa1138440 | 0.810265 | 1.256310e-50 | -8.615850e-47 |
| Msa0147540 | Msa1138440 | 0.807053 | 6.098666e-50 | -8.615850e-47 |
| Msa0163530 | Msa1138440 | 0.801539 | 8.584160e-49 | -8.615850e-47 |
| Msa0173370 | Msa1138440 | 0.804660 | 1.941846e-49 | -8.615850e-47 |
| Msa0180290 | Msa1138440 | 0.848521 | 5.814314e-60 | -8.615850e-47 |
| Msa0196630 | Msa1138440 | 0.807292 | 5.428501e-50 | -8.615850e-47 |
| Msa0218430 | Msa1138440 | 0.805897 | 1.069384e-49 | -8.615850e-47 |
| Msa0387970 | Msa1138440 | 0.829019 | 6.505269e-55 | -8.615850e-47 |
| Msa0410960 | Msa1138440 | 0.810675 | 1.024257e-50 | -8.615850e-47 |
| Msa0451710 | Msa1138440 | 0.816235 | 6.138765e-52 | -8.615850e-47 |
| Msa0452490 | Msa1138440 | 0.813279 | 2.773279e-51 | -8.615850e-47 |
| Msa0984000 | Msa1138440 | 0.821998 | 2.995821e-53 | -8.615850e-47 |
| Msa0987860 | Msa1138440 | 0.820758 | 5.790604e-53 | -8.615850e-47 |
| Msa1009150 | Msa1138440 | 0.824629 | 7.277312e-54 | -8.615850e-47 |
| Msa1009170 | Msa1138440 | 0.840800 | 6.991219e-58 | -8.615850e-47 |
| Msa1009240 | Msa1138440 | 0.919422 | 4.589928e-87 | -8.615850e-47 |
| Msa1009260 | Msa1138440 | 0.855780 | 5.013169e-62 | -8.615850e-47 |
| Msa1031530 | Msa1138440 | 0.801810 | 7.554937e-49 | -8.615850e-47 |
| Msa1043020 | Msa1138440 | 0.843508 | 1.342102e-58 | -8.615850e-47 |
| Msa1050540 | Msa1138440 | 0.958787 | 9.902909e-117 | -8.615850e-47 |
| Msa1050640 | Msa1138440 | 0.919610 | 3.629465e-87 | -8.615850e-47 |
| Msa1052030 | Msa1138440 | 0.810716 | 1.003520e-50 | -8.615850e-47 |
| Msa1096510 | Msa1138440 | 0.835603 | 1.524525e-56 | -8.615850e-47 |
| Msa1096520 | Msa1138440 | 0.842930 | 1.913609e-58 | -8.615850e-47 |
| Msa1096570 | Msa1138440 | 0.830814 | 2.376373e-55 | -8.615850e-47 |
| Msa1098340 | Msa1138440 | 0.874077 | 8.953820e-68 | -8.615850e-47 |
| Msa1098350 | Msa1138440 | 0.849031 | 4.196771e-60 | -8.615850e-47 |
| Msa1098380 | Msa1138440 | 0.807735 | 4.370861e-50 | -8.615850e-47 |
| Msa0239610 | Msa1138440 | 0.817025 | 4.083589e-52 | -8.615850e-47 |
| Msa0343370 | Msa1138440 | 0.830876 | 2.294090e-55 | -8.615850e-47 |
| Msa0360130 | Msa1138440 | 0.804585 | 2.012696e-49 | -8.615850e-47 |
| Msa1107830 | Msa1138440 | 0.810005 | 1.428763e-50 | -8.615850e-47 |
| Msa1125450 | Msa1138440 | 0.808164 | 3.543335e-50 | -8.615850e-47 |
| Msa1138440 | Msa1138450 | 0.833347 | 5.619449e-56 | -8.615850e-47 |
| Msa1138440 | Msa1138480 | 0.831775 | 1.378615e-55 | -8.615850e-47 |
| Msa1138440 | Msa1138490 | 0.861000 | 1.395211e-63 | -8.615850e-47 |
| Msa1138440 | Msa1145930 | 0.823783 | 1.149976e-53 | -8.615850e-47 |
| Msa1138440 | Msa1164570 | 0.804888 | 1.739856e-49 | -8.615850e-47 |
| Msa1138440 | Msa1182800 | 0.810787 | 9.689493e-51 | -8.615850e-47 |
| Msa1138440 | Msa1199670 | 0.829707 | 4.428341e-55 | -8.615850e-47 |
| Msa1138440 | Msa1204430 | 0.808533 | 2.956263e-50 | -8.615850e-47 |
| Msa1138440 | Msa1204470 | 0.827368 | 1.625640e-54 | -8.615850e-47 |
| Msa1138440 | Msa1236860 | 0.809928 | 1.484569e-50 | -8.615850e-47 |
| Msa1138440 | Msa1248220 | 0.808264 | 3.372492e-50 | -8.615850e-47 |
| Msa1138440 | Msa1256430 | 0.831995 | 1.216895e-55 | -8.615850e-47 |
| Msa1138440 | Msa1279330 | 0.831783 | 1.372426e-55 | -8.615850e-47 |
| Msa1138440 | Msa1296650 | 0.800996 | 1.108620e-48 | -8.615850e-47 |
| Msa1138440 | Msa1296680 | 0.821262 | 4.432773e-53 | -8.615850e-47 |
| Msa1138440 | Msa1317240 | 0.816184 | 6.302218e-52 | -8.615850e-47 |
| Msa1138440 | Msa1365850 | -0.811775 | 5.915371e-51 | -8.615850e-47 |
| Msa1138440 | Msa1386250 | 0.810610 | 1.057979e-50 | -8.615850e-47 |
| Msa1138440 | Msa1394810 | 0.828763 | 7.503746e-55 | -8.615850e-47 |
| Msa1138440 | Msa1406020 | 0.827887 | 1.220241e-54 | -8.615850e-47 |
| Msa1138440 | Msa1422150 | 0.842846 | 2.015135e-58 | -8.615850e-47 |
| Msa1138440 | Msa1450780 | 0.820522 | 6.562818e-53 | -8.615850e-47 |
| Msa1138440 | Msa1456620 | 0.816386 | 5.679947e-52 | -8.615850e-47 |
| Msa1138440 | Msa1457070 | 0.804829 | 1.790388e-49 | -8.615850e-47 |
| Msa1138440 | Msa1460530 | 0.806150 | 9.459049e-50 | -8.615850e-47 |
| Msa0503620 | Msa1138440 | 0.817750 | 2.805094e-52 | -8.615850e-47 |
| Msa0517460 | Msa1138440 | 0.832299 | 1.023326e-55 | -8.615850e-47 |
| Msa0530830 | Msa1138440 | 0.829198 | 5.886416e-55 | -8.615850e-47 |
| Msa0548210 | Msa1138440 | 0.822063 | 2.894943e-53 | -8.615850e-47 |
| Msa0556070 | Msa1138440 | 0.813769 | 2.164032e-51 | -8.615850e-47 |
| Msa0558710 | Msa1138440 | 0.805590 | 1.240642e-49 | -8.615850e-47 |
| Msa0561420 | Msa1138440 | 0.804728 | 1.879480e-49 | -8.615850e-47 |
| Msa0565530 | Msa1138440 | 0.801850 | 7.411862e-49 | -8.615850e-47 |
| Msa0577050 | Msa1138440 | 0.805834 | 1.102440e-49 | -8.615850e-47 |
| Msa0853500 | Msa1138440 | 0.847784 | 9.287388e-60 | -8.615850e-47 |
| Msa0861400 | Msa1138440 | 0.803580 | 3.257047e-49 | -8.615850e-47 |
| Msa0862230 | Msa1138440 | 0.823726 | 1.185988e-53 | -8.615850e-47 |
| Msa0884300 | Msa1138440 | 0.808454 | 3.072825e-50 | -8.615850e-47 |
| Msa0898830 | Msa1138440 | 0.805912 | 1.061275e-49 | -8.615850e-47 |
| Msa0911910 | Msa1138440 | 0.811331 | 7.384256e-51 | -8.615850e-47 |
| Msa0950570 | Msa1138440 | 0.800976 | 1.119260e-48 | -8.615850e-47 |
| Msa0964150 | Msa1138440 | 0.814546 | 1.458220e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138440 | MtrunA17_Chr3g0140461 | 90.028 | 361 | 35 | 1 | 1 | 361 | 26 | 385 | 0.0 | 650 |
| Msa1138440 | MtrunA17_Chr3g0140491 | 83.889 | 360 | 56 | 1 | 1 | 360 | 1 | 358 | 0.0 | 617 |
| Msa1138440 | MtrunA17_Chr4g0065451 | 82.432 | 148 | 26 | 0 | 213 | 360 | 1 | 148 | 4.26e-88 | 262 |
| Msa1138440 | MtrunA17_Chr4g0065461 | 80.282 | 142 | 24 | 2 | 1 | 141 | 1 | 139 | 6.08e-68 | 210 |
| Msa1138440 | MtrunA17_Chr4g0065531 | 34.043 | 376 | 222 | 9 | 3 | 364 | 2 | 365 | 1.52e-66 | 215 |
| Msa1138440 | MtrunA17_Chr4g0065561 | 36.290 | 372 | 211 | 9 | 9 | 364 | 6 | 367 | 4.04e-66 | 223 |
| Msa1138440 | MtrunA17_Chr1g0149821 | 34.473 | 351 | 211 | 5 | 22 | 359 | 32 | 376 | 3.41e-65 | 211 |
| Msa1138440 | MtrunA17_Chr4g0065541 | 35.127 | 353 | 207 | 7 | 26 | 365 | 17 | 360 | 3.14e-63 | 215 |
| Msa1138440 | MtrunA17_Chr4g0065511 | 34.985 | 343 | 201 | 9 | 30 | 358 | 35 | 369 | 1.73e-57 | 191 |
| Msa1138440 | MtrunA17_Chr4g0065501 | 35.447 | 347 | 198 | 8 | 30 | 358 | 37 | 375 | 3.35e-54 | 183 |
| Msa1138440 | MtrunA17_Chr4g0066051 | 34.463 | 177 | 112 | 1 | 6 | 182 | 4 | 176 | 3.18e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138440 | AT4G19810.2 | 49.722 | 360 | 166 | 6 | 11 | 361 | 9 | 362 | 1.25e-114 | 338 |
| Msa1138440 | AT4G19810.1 | 49.722 | 360 | 166 | 6 | 11 | 361 | 9 | 362 | 1.25e-114 | 338 |
| Msa1138440 | AT4G19820.1 | 47.091 | 361 | 176 | 6 | 10 | 361 | 6 | 360 | 4.86e-102 | 306 |
| Msa1138440 | AT4G19800.1 | 44.348 | 345 | 178 | 5 | 25 | 361 | 2 | 340 | 3.57e-96 | 292 |
| Msa1138440 | AT4G19750.1 | 44.231 | 364 | 175 | 10 | 17 | 363 | 1 | 353 | 1.31e-93 | 284 |
| Msa1138440 | AT4G19760.1 | 43.902 | 369 | 175 | 10 | 17 | 361 | 1 | 361 | 8.18e-91 | 277 |
| Msa1138440 | AT4G19720.1 | 42.286 | 350 | 175 | 7 | 30 | 361 | 6 | 346 | 2.93e-84 | 260 |
| Msa1138440 | AT4G19730.1 | 42.183 | 339 | 167 | 9 | 17 | 333 | 1 | 332 | 2.19e-74 | 234 |
| Msa1138440 | AT4G19770.1 | 41.379 | 261 | 140 | 5 | 115 | 367 | 1 | 256 | 6.95e-59 | 192 |
| Msa1138440 | AT4G19740.1 | 35.602 | 191 | 109 | 5 | 138 | 318 | 24 | 210 | 1.38e-28 | 111 |
Find 85 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATGGAAGTTGTTATTTC+TGG | 0.149476 | 7_4:+7909504 | None:intergenic |
| ATACCAATAACCACCTTTAA+TGG | 0.242528 | 7_4:+7909816 | None:intergenic |
| GTTTGAGTTGGATAACTATC+TGG | 0.256686 | 7_4:+7909244 | None:intergenic |
| TCTACAAACGCTGCCATTAA+AGG | 0.257757 | 7_4:-7909829 | Msa1138440:CDS |
| GCACTTGGTTTACCCTTCTA+TGG | 0.267748 | 7_4:-7909124 | Msa1138440:CDS |
| GCCAAGCAAAATGGATTGTT+TGG | 0.270489 | 7_4:-7908896 | Msa1138440:CDS |
| CAACAAAGCAGTGTTTAATT+AGG | 0.279434 | 7_4:+7908803 | None:intergenic |
| CAGCGTTTGTAGAGGAAAAT+TGG | 0.280388 | 7_4:+7909839 | None:intergenic |
| CTGCCATTAAAGGTGGTTAT+TGG | 0.284781 | 7_4:-7909819 | Msa1138440:CDS |
| ACTCCATTTGTAACCATAGA+AGG | 0.300520 | 7_4:+7909111 | None:intergenic |
| CAGATGAAGGTCTCACAAAA+TGG | 0.306351 | 7_4:-7909177 | Msa1138440:CDS |
| GTTGCTTATGCCAAGCAAAA+TGG | 0.325981 | 7_4:-7908905 | Msa1138440:CDS |
| GACCTTCATCTGCACTAAAT+TGG | 0.342441 | 7_4:+7909188 | None:intergenic |
| GCCGCAGAGTCTAGGAGTTC+CGG | 0.370169 | 7_4:-7909397 | Msa1138440:CDS |
| ATGGTGACTTGGTTGGTATT+AGG | 0.371295 | 7_4:+7909715 | None:intergenic |
| CTATGGTTACAAATGGAGTT+TGG | 0.386230 | 7_4:-7909107 | Msa1138440:CDS |
| CGAATTACTCTTTAACTGAA+TGG | 0.386421 | 7_4:+7909651 | None:intergenic |
| GAAGTTGAAATGACCAACTT+TGG | 0.388370 | 7_4:-7909451 | Msa1138440:CDS |
| CTGCACTAAATTGGCCAGTT+GGG | 0.395696 | 7_4:+7909197 | None:intergenic |
| TAACAACAGTACCGGCTTGC+CGG | 0.396736 | 7_4:+7909378 | None:intergenic |
| AGTAAAGCTACGCAGGGACT+AGG | 0.407460 | 7_4:-7909058 | Msa1138440:CDS |
| CTCAAAATTACTGCTTCAAA+GGG | 0.414658 | 7_4:-7908973 | Msa1138440:CDS |
| CATTCAGTTAAAGAGTAATT+CGG | 0.416514 | 7_4:-7909650 | Msa1138440:CDS |
| CTGCTGTGGCCGCAGAGTCT+AGG | 0.417042 | 7_4:-7909405 | Msa1138440:CDS |
| TGTGCTTTAGTAGAACGTTC+AGG | 0.418141 | 7_4:+7909595 | None:intergenic |
| TGTTGCAAACAACTTGGATT+GGG | 0.430200 | 7_4:-7909296 | Msa1138440:CDS |
| TACCCTTCTATGGTTACAAA+TGG | 0.432906 | 7_4:-7909114 | Msa1138440:CDS |
| AAATTGGACAAGACAACAAT+TGG | 0.443469 | 7_4:-7908859 | Msa1138440:CDS |
| AAACAAGTGGGTGAAATAAG+AGG | 0.449767 | 7_4:+7909759 | None:intergenic |
| GTAAAGCTACGCAGGGACTA+GGG | 0.458430 | 7_4:-7909057 | Msa1138440:CDS |
| ACTCAAAATTACTGCTTCAA+AGG | 0.460609 | 7_4:-7908974 | Msa1138440:CDS |
| TCCATGGCCTTGATCTTGAC+TGG | 0.462821 | 7_4:-7909489 | Msa1138440:CDS |
| ACTGCTTCAAAGGGACAGAT+TGG | 0.463515 | 7_4:-7908964 | Msa1138440:CDS |
| CTCACAAAATGGGTAGGGTT+AGG | 0.464284 | 7_4:-7909166 | Msa1138440:CDS |
| AGCTGCGTTTGTAGAAGAAA+TGG | 0.467412 | 7_4:+7909696 | None:intergenic |
| ATGTTGCAAACAACTTGGAT+TGG | 0.470996 | 7_4:-7909297 | Msa1138440:CDS |
| TTTGAGTTGGATAACTATCT+GGG | 0.472310 | 7_4:+7909245 | None:intergenic |
| CTTGGTTGGTATTAGGATCA+AGG | 0.473190 | 7_4:+7909722 | None:intergenic |
| TCAAGATGTTGCAAACAACT+TGG | 0.478830 | 7_4:-7909302 | Msa1138440:CDS |
| GTCATTTCAACTTCTGAGGA+TGG | 0.479248 | 7_4:+7909460 | None:intergenic |
| GCGGGTGGTTGTGTTTGAGT+TGG | 0.482952 | 7_4:+7909232 | None:intergenic |
| TCTGCACTAAATTGGCCAGT+TGG | 0.504088 | 7_4:+7909196 | None:intergenic |
| TGACCTGGGTAGTACTTCAA+TGG | 0.515075 | 7_4:+7909322 | None:intergenic |
| TAACTGAATGGTTTCAGTGA+AGG | 0.515519 | 7_4:+7909663 | None:intergenic |
| AGATGAAGGTCTCACAAAAT+GGG | 0.516707 | 7_4:-7909176 | Msa1138440:CDS |
| TTGGAGAATCATGAGGAGAG+TGG | 0.520726 | 7_4:+7909864 | None:intergenic |
| AATTGGACTCTTTCTCAAGC+AGG | 0.528807 | 7_4:-7908842 | Msa1138440:CDS |
| TTGTAGAGGAAAATTGGAGT+TGG | 0.530932 | 7_4:+7909845 | None:intergenic |
| GTTGGTCATTTCAACTTCTG+AGG | 0.534568 | 7_4:+7909456 | None:intergenic |
| GTCTAGGAGTTCCGGCAAGC+CGG | 0.536961 | 7_4:-7909389 | Msa1138440:CDS |
| TTGCTTGGCATAAGCAACCT+TGG | 0.538135 | 7_4:+7908910 | None:intergenic |
| TTGTTTGCAACATCTTGACC+TGG | 0.548598 | 7_4:+7909307 | None:intergenic |
| GCCAGTCAAGATCAAGGCCA+TGG | 0.551440 | 7_4:+7909488 | None:intergenic |
| AGTTGTTATTTCTGGCTAGT+CGG | 0.552779 | 7_4:+7909512 | None:intergenic |
| TGTAATGAGAAAACCAAAGT+TGG | 0.557402 | 7_4:+7909438 | None:intergenic |
| TTGTTATCTGCTGCAGTGGG+TGG | 0.559981 | 7_4:-7909361 | Msa1138440:CDS |
| CTGTTGTTATCTGCTGCAGT+GGG | 0.561968 | 7_4:-7909364 | Msa1138440:CDS |
| ACTGGCTTGGCTAGACATGT+TGG | 0.568429 | 7_4:+7909564 | None:intergenic |
| TACAGCGTGGAGAGCTGCTG+TGG | 0.570204 | 7_4:-7909419 | Msa1138440:CDS |
| GGCCAATTTAGTGCAGATGA+AGG | 0.571051 | 7_4:-7909190 | Msa1138440:CDS |
| GAAGGTCTCACAAAATGGGT+AGG | 0.571961 | 7_4:-7909172 | Msa1138440:CDS |
| AACAAGTGGGTGAAATAAGA+GGG | 0.575691 | 7_4:+7909760 | None:intergenic |
| CAGCAAATGCACAAAACAAG+TGG | 0.579073 | 7_4:+7909746 | None:intergenic |
| CTCCATTTGTAACCATAGAA+GGG | 0.586080 | 7_4:+7909112 | None:intergenic |
| AAGGTCTCACAAAATGGGTA+GGG | 0.587493 | 7_4:-7909171 | Msa1138440:CDS |
| CACTCAGAGTATATCTGCCA+AGG | 0.587655 | 7_4:-7908927 | Msa1138440:CDS |
| GATACAGCCAGTCAAGATCA+AGG | 0.589592 | 7_4:+7909482 | None:intergenic |
| AGAAGAAATGGTGACTTGGT+TGG | 0.600417 | 7_4:+7909708 | None:intergenic |
| GCAGCAGATAACAACAGTAC+CGG | 0.602334 | 7_4:+7909370 | None:intergenic |
| TTCAAAGGGACAGATTGGTA+TGG | 0.606399 | 7_4:-7908959 | Msa1138440:CDS |
| TTTAATGGCAGCGTTTGTAG+AGG | 0.608544 | 7_4:+7909831 | None:intergenic |
| ACTGTTGTTATCTGCTGCAG+TGG | 0.615630 | 7_4:-7909365 | Msa1138440:CDS |
| TGAGGAGAGTGGATATCAAG+AGG | 0.619928 | 7_4:+7909875 | None:intergenic |
| TAAAGCTACGCAGGGACTAG+GGG | 0.627917 | 7_4:-7909056 | Msa1138440:CDS |
| GCCAGAAATAACAACTTCCA+TGG | 0.628402 | 7_4:-7909505 | Msa1138440:CDS |
| ACTAGGGGCAGTGAAGTACA+AGG | 0.628451 | 7_4:-7909041 | Msa1138440:CDS |
| ATTGGAGTTGGAGAATCATG+AGG | 0.636575 | 7_4:+7909857 | None:intergenic |
| TTGTAGAAGAAATGGTGACT+TGG | 0.641849 | 7_4:+7909704 | None:intergenic |
| AGCAAATGCACAAAACAAGT+GGG | 0.646781 | 7_4:+7909747 | None:intergenic |
| GATCAATCTCAGAAACTGCA+AGG | 0.648716 | 7_4:+7909782 | None:intergenic |
| TGTTTGCAACATCTTGACCT+GGG | 0.652675 | 7_4:+7909308 | None:intergenic |
| ACAAACGCTGCCATTAAAGG+TGG | 0.664680 | 7_4:-7909826 | Msa1138440:CDS |
| ACTCCATTGAAGTACTACCC+AGG | 0.697331 | 7_4:-7909325 | Msa1138440:CDS |
| GCCGGAACTCCTAGACTCTG+CGG | 0.700936 | 7_4:+7909396 | None:intergenic |
| TTGAGTTGGATAACTATCTG+GGG | 0.706447 | 7_4:+7909246 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATCTATGAAAGATTTT+CGG | + | chr7_4:7909182-7909201 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7_4:7909650-7909669 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7_4:7909693-7909712 | Msa1138440:CDS | 20.0% |
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7_4:7909694-7909713 | Msa1138440:CDS | 20.0% |
| !!! | AAGAATCTATGAAAGATTTT+CGG | + | chr7_4:7909182-7909201 | None:intergenic | 20.0% |
| !!! | TAGCTTTACTAAAAATTCTA+CGG | + | chr7_4:7909650-7909669 | None:intergenic | 20.0% |
| !! | TACAAGGATATAAAAAATAC+TGG | - | chr7_4:7909693-7909712 | Msa1138440:CDS | 20.0% |
| !! | ACAAGGATATAAAAAATACT+GGG | - | chr7_4:7909694-7909713 | Msa1138440:CDS | 20.0% |
| ! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7_4:7909068-7909087 | Msa1138440:CDS | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7_4:7909642-7909661 | None:intergenic | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7_4:7909695-7909714 | Msa1138440:CDS | 25.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7_4:7909696-7909715 | Msa1138440:CDS | 25.0% |
| ! | CATTCAGTTAAAGAGTAATT+CGG | - | chr7_4:7909068-7909087 | Msa1138440:CDS | 25.0% |
| ! | CTAAAAATTCTACGGTTATT+AGG | + | chr7_4:7909642-7909661 | None:intergenic | 25.0% |
| ! | CAAGGATATAAAAAATACTG+GGG | - | chr7_4:7909695-7909714 | Msa1138440:CDS | 25.0% |
| ! | AAGGATATAAAAAATACTGG+GGG | - | chr7_4:7909696-7909715 | Msa1138440:CDS | 25.0% |
| ATACCAATAACCACCTTTAA+TGG | + | chr7_4:7908905-7908924 | None:intergenic | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7_4:7909070-7909089 | None:intergenic | 30.0% | |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7_4:7909090-7909109 | Msa1138440:CDS | 30.0% |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7_4:7909093-7909112 | Msa1138440:CDS | 30.0% |
| TGTAATGAGAAAACCAAAGT+TGG | + | chr7_4:7909283-7909302 | None:intergenic | 30.0% | |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7_4:7909476-7909495 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7_4:7909653-7909672 | Msa1138440:CDS | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7_4:7909654-7909673 | Msa1138440:CDS | 30.0% |
| AGGATATAAAAAATACTGGG+GGG | - | chr7_4:7909697-7909716 | Msa1138440:CDS | 30.0% | |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7_4:7909739-7909758 | None:intergenic | 30.0% |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7_4:7909744-7909763 | Msa1138440:CDS | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7_4:7909745-7909764 | Msa1138440:CDS | 30.0% | |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7_4:7909835-7909854 | Msa1138440:CDS | 30.0% |
| AAATTGGACAAGACAACAAT+TGG | - | chr7_4:7909859-7909878 | Msa1138440:CDS | 30.0% | |
| ATACCAATAACCACCTTTAA+TGG | + | chr7_4:7908905-7908924 | None:intergenic | 30.0% | |
| CGAATTACTCTTTAACTGAA+TGG | + | chr7_4:7909070-7909089 | None:intergenic | 30.0% | |
| ! | GTGAAAACGCTTTTATCAAT+TGG | - | chr7_4:7909090-7909109 | Msa1138440:CDS | 30.0% |
| ! | AAAACGCTTTTATCAATTGG+TGG | - | chr7_4:7909093-7909112 | Msa1138440:CDS | 30.0% |
| TGTAATGAGAAAACCAAAGT+TGG | + | chr7_4:7909283-7909302 | None:intergenic | 30.0% | |
| !! | TTTGAGTTGGATAACTATCT+GGG | + | chr7_4:7909476-7909495 | None:intergenic | 30.0% |
| !!! | AATTTTTAGTAAAGCTACGC+AGG | - | chr7_4:7909653-7909672 | Msa1138440:CDS | 30.0% |
| !!! | ATTTTTAGTAAAGCTACGCA+GGG | - | chr7_4:7909654-7909673 | Msa1138440:CDS | 30.0% |
| AGGATATAAAAAATACTGGG+GGG | - | chr7_4:7909697-7909716 | Msa1138440:CDS | 30.0% | |
| !! | GCAGTAATTTTGAGTATATG+TGG | + | chr7_4:7909739-7909758 | None:intergenic | 30.0% |
| ACTCAAAATTACTGCTTCAA+AGG | - | chr7_4:7909744-7909763 | Msa1138440:CDS | 30.0% | |
| CTCAAAATTACTGCTTCAAA+GGG | - | chr7_4:7909745-7909764 | Msa1138440:CDS | 30.0% | |
| ! | GATTGTTTGGATATTTTGCT+TGG | - | chr7_4:7909835-7909854 | Msa1138440:CDS | 30.0% |
| AAATTGGACAAGACAACAAT+TGG | - | chr7_4:7909859-7909878 | Msa1138440:CDS | 30.0% | |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7_4:7908876-7908895 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7_4:7908961-7908980 | None:intergenic | 35.0% | |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7_4:7908962-7908981 | None:intergenic | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr7_4:7908974-7908993 | None:intergenic | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr7_4:7909017-7909036 | None:intergenic | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7_4:7909058-7909077 | None:intergenic | 35.0% | |
| ! | TATGAAAGATTTTCGGCTAC+TGG | + | chr7_4:7909175-7909194 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7_4:7909209-7909228 | None:intergenic | 35.0% |
| GAAGTTGAAATGACCAACTT+TGG | - | chr7_4:7909267-7909286 | Msa1138440:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7_4:7909416-7909435 | Msa1138440:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7_4:7909421-7909440 | Msa1138440:CDS | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7_4:7909422-7909441 | Msa1138440:CDS | 35.0% | |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7_4:7909475-7909494 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7_4:7909477-7909496 | None:intergenic | 35.0% |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7_4:7909542-7909561 | Msa1138440:CDS | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7_4:7909604-7909623 | Msa1138440:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7_4:7909609-7909628 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7_4:7909610-7909629 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7_4:7909611-7909630 | Msa1138440:CDS | 35.0% | |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7_4:7909826-7909845 | None:intergenic | 35.0% |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7_4:7909843-7909862 | Msa1138440:CDS | 35.0% |
| TTGTAGAGGAAAATTGGAGT+TGG | + | chr7_4:7908876-7908895 | None:intergenic | 35.0% | |
| AACAAGTGGGTGAAATAAGA+GGG | + | chr7_4:7908961-7908980 | None:intergenic | 35.0% | |
| AAACAAGTGGGTGAAATAAG+AGG | + | chr7_4:7908962-7908981 | None:intergenic | 35.0% | |
| AGCAAATGCACAAAACAAGT+GGG | + | chr7_4:7908974-7908993 | None:intergenic | 35.0% | |
| TTGTAGAAGAAATGGTGACT+TGG | + | chr7_4:7909017-7909036 | None:intergenic | 35.0% | |
| TAACTGAATGGTTTCAGTGA+AGG | + | chr7_4:7909058-7909077 | None:intergenic | 35.0% | |
| ! | TATGAAAGATTTTCGGCTAC+TGG | + | chr7_4:7909175-7909194 | None:intergenic | 35.0% |
| !! | AGTTGTTATTTCTGGCTAGT+CGG | + | chr7_4:7909209-7909228 | None:intergenic | 35.0% |
| GAAGTTGAAATGACCAACTT+TGG | - | chr7_4:7909267-7909286 | Msa1138440:CDS | 35.0% | |
| TCAAGATGTTGCAAACAACT+TGG | - | chr7_4:7909416-7909435 | Msa1138440:CDS | 35.0% | |
| ATGTTGCAAACAACTTGGAT+TGG | - | chr7_4:7909421-7909440 | Msa1138440:CDS | 35.0% | |
| TGTTGCAAACAACTTGGATT+GGG | - | chr7_4:7909422-7909441 | Msa1138440:CDS | 35.0% | |
| !! | TTGAGTTGGATAACTATCTG+GGG | + | chr7_4:7909475-7909494 | None:intergenic | 35.0% |
| !! | GTTTGAGTTGGATAACTATC+TGG | + | chr7_4:7909477-7909496 | None:intergenic | 35.0% |
| AGATGAAGGTCTCACAAAAT+GGG | - | chr7_4:7909542-7909561 | Msa1138440:CDS | 35.0% | |
| TACCCTTCTATGGTTACAAA+TGG | - | chr7_4:7909604-7909623 | Msa1138440:CDS | 35.0% | |
| CTCCATTTGTAACCATAGAA+GGG | + | chr7_4:7909609-7909628 | None:intergenic | 35.0% | |
| ACTCCATTTGTAACCATAGA+AGG | + | chr7_4:7909610-7909629 | None:intergenic | 35.0% | |
| CTATGGTTACAAATGGAGTT+TGG | - | chr7_4:7909611-7909630 | Msa1138440:CDS | 35.0% | |
| ! | TCCAAACAATCCATTTTGCT+TGG | + | chr7_4:7909826-7909845 | None:intergenic | 35.0% |
| ! | GGATATTTTGCTTGGCAAAT+TGG | - | chr7_4:7909843-7909862 | Msa1138440:CDS | 35.0% |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7_4:7908830-7908849 | None:intergenic | 40.0% |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7_4:7908864-7908883 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7_4:7908882-7908901 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7_4:7908890-7908909 | None:intergenic | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7_4:7908889-7908908 | Msa1138440:CDS | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7_4:7908899-7908918 | Msa1138440:CDS | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7_4:7908939-7908958 | None:intergenic | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr7_4:7908975-7908994 | None:intergenic | 40.0% | |
| ! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7_4:7908999-7909018 | None:intergenic | 40.0% |
| !! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7_4:7909006-7909025 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7_4:7909013-7909032 | None:intergenic | 40.0% |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr7_4:7909025-7909044 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7_4:7909096-7909115 | Msa1138440:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7_4:7909099-7909118 | Msa1138440:CDS | 40.0% |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7_4:7909126-7909145 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7_4:7909213-7909232 | Msa1138440:CDS | 40.0% | |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7_4:7909217-7909236 | None:intergenic | 40.0% |
| ! | GTCATTTCAACTTCTGAGGA+TGG | + | chr7_4:7909261-7909280 | None:intergenic | 40.0% |
| GTTGGTCATTTCAACTTCTG+AGG | + | chr7_4:7909265-7909284 | None:intergenic | 40.0% | |
| !! | TTGGTTTTCTCATTACAGCG+TGG | - | chr7_4:7909286-7909305 | Msa1138440:CDS | 40.0% |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7_4:7909413-7909432 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7_4:7909414-7909433 | None:intergenic | 40.0% | |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7_4:7909508-7909527 | None:intergenic | 40.0% |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7_4:7909533-7909552 | None:intergenic | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7_4:7909541-7909560 | Msa1138440:CDS | 40.0% | |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7_4:7909547-7909566 | Msa1138440:CDS | 40.0% | |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7_4:7909582-7909601 | None:intergenic | 40.0% |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7_4:7909579-7909598 | Msa1138440:CDS | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7_4:7909759-7909778 | Msa1138440:CDS | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7_4:7909813-7909832 | Msa1138440:CDS | 40.0% | |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7_4:7909822-7909841 | Msa1138440:CDS | 40.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7_4:7909876-7909895 | Msa1138440:CDS | 40.0% | |
| ! | CAAGAGGAACGAATGCTTTT+TGG | + | chr7_4:7908830-7908849 | None:intergenic | 40.0% |
| ATTGGAGTTGGAGAATCATG+AGG | + | chr7_4:7908864-7908883 | None:intergenic | 40.0% | |
| CAGCGTTTGTAGAGGAAAAT+TGG | + | chr7_4:7908882-7908901 | None:intergenic | 40.0% | |
| TTTAATGGCAGCGTTTGTAG+AGG | + | chr7_4:7908890-7908909 | None:intergenic | 40.0% | |
| TCTACAAACGCTGCCATTAA+AGG | - | chr7_4:7908889-7908908 | Msa1138440:CDS | 40.0% | |
| CTGCCATTAAAGGTGGTTAT+TGG | - | chr7_4:7908899-7908918 | Msa1138440:CDS | 40.0% | |
| GATCAATCTCAGAAACTGCA+AGG | + | chr7_4:7908939-7908958 | None:intergenic | 40.0% | |
| CAGCAAATGCACAAAACAAG+TGG | + | chr7_4:7908975-7908994 | None:intergenic | 40.0% | |
| ! | CTTGGTTGGTATTAGGATCA+AGG | + | chr7_4:7908999-7909018 | None:intergenic | 40.0% |
| !! | ATGGTGACTTGGTTGGTATT+AGG | + | chr7_4:7909006-7909025 | None:intergenic | 40.0% |
| !! | AGAAGAAATGGTGACTTGGT+TGG | + | chr7_4:7909013-7909032 | None:intergenic | 40.0% |
| AGCTGCGTTTGTAGAAGAAA+TGG | + | chr7_4:7909025-7909044 | None:intergenic | 40.0% | |
| ! | ACGCTTTTATCAATTGGTGG+TGG | - | chr7_4:7909096-7909115 | Msa1138440:CDS | 40.0% |
| !!! | CTTTTATCAATTGGTGGTGG+TGG | - | chr7_4:7909099-7909118 | Msa1138440:CDS | 40.0% |
| TGTGCTTTAGTAGAACGTTC+AGG | + | chr7_4:7909126-7909145 | None:intergenic | 40.0% | |
| GCCAGAAATAACAACTTCCA+TGG | - | chr7_4:7909213-7909232 | Msa1138440:CDS | 40.0% | |
| !! | GCCATGGAAGTTGTTATTTC+TGG | + | chr7_4:7909217-7909236 | None:intergenic | 40.0% |
| ! | GTCATTTCAACTTCTGAGGA+TGG | + | chr7_4:7909261-7909280 | None:intergenic | 40.0% |
| GTTGGTCATTTCAACTTCTG+AGG | + | chr7_4:7909265-7909284 | None:intergenic | 40.0% | |
| !! | TTGGTTTTCTCATTACAGCG+TGG | - | chr7_4:7909286-7909305 | Msa1138440:CDS | 40.0% |
| TGTTTGCAACATCTTGACCT+GGG | + | chr7_4:7909413-7909432 | None:intergenic | 40.0% | |
| TTGTTTGCAACATCTTGACC+TGG | + | chr7_4:7909414-7909433 | None:intergenic | 40.0% | |
| !! | AGTTGGGTTTTTCAAAGGAG+CGG | + | chr7_4:7909508-7909527 | None:intergenic | 40.0% |
| GACCTTCATCTGCACTAAAT+TGG | + | chr7_4:7909533-7909552 | None:intergenic | 40.0% | |
| CAGATGAAGGTCTCACAAAA+TGG | - | chr7_4:7909541-7909560 | Msa1138440:CDS | 40.0% | |
| AAGGTCTCACAAAATGGGTA+GGG | - | chr7_4:7909547-7909566 | Msa1138440:CDS | 40.0% | |
| !! | CCAAGTGCAAGTTTGCTTTT+TGG | + | chr7_4:7909582-7909601 | None:intergenic | 40.0% |
| CCAAAAAGCAAACTTGCACT+TGG | - | chr7_4:7909579-7909598 | Msa1138440:CDS | 40.0% | |
| TTCAAAGGGACAGATTGGTA+TGG | - | chr7_4:7909759-7909778 | Msa1138440:CDS | 40.0% | |
| GTTGCTTATGCCAAGCAAAA+TGG | - | chr7_4:7909813-7909832 | Msa1138440:CDS | 40.0% | |
| !! | GCCAAGCAAAATGGATTGTT+TGG | - | chr7_4:7909822-7909841 | Msa1138440:CDS | 40.0% |
| AATTGGACTCTTTCTCAAGC+AGG | - | chr7_4:7909876-7909895 | Msa1138440:CDS | 40.0% | |
| TGAGGAGAGTGGATATCAAG+AGG | + | chr7_4:7908846-7908865 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7_4:7908857-7908876 | None:intergenic | 45.0% | |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7_4:7908892-7908911 | Msa1138440:CDS | 45.0% | |
| !! | AAGATTTTCGGCTACTGGCT+TGG | + | chr7_4:7909170-7909189 | None:intergenic | 45.0% |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7_4:7909239-7909258 | None:intergenic | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr7_4:7909351-7909370 | None:intergenic | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr7_4:7909353-7909372 | Msa1138440:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr7_4:7909354-7909373 | Msa1138440:CDS | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7_4:7909393-7909412 | Msa1138440:CDS | 45.0% |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7_4:7909399-7909418 | None:intergenic | 45.0% | |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7_4:7909507-7909526 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7_4:7909507-7909526 | Msa1138440:CDS | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7_4:7909513-7909532 | None:intergenic | 45.0% |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7_4:7909524-7909543 | None:intergenic | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7_4:7909525-7909544 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7_4:7909528-7909547 | Msa1138440:CDS | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7_4:7909546-7909565 | Msa1138440:CDS | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7_4:7909552-7909571 | Msa1138440:CDS | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7_4:7909594-7909613 | Msa1138440:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7_4:7909754-7909773 | Msa1138440:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7_4:7909791-7909810 | Msa1138440:CDS | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7_4:7909811-7909830 | None:intergenic | 45.0% | |
| TGAGGAGAGTGGATATCAAG+AGG | + | chr7_4:7908846-7908865 | None:intergenic | 45.0% | |
| TTGGAGAATCATGAGGAGAG+TGG | + | chr7_4:7908857-7908876 | None:intergenic | 45.0% | |
| ACAAACGCTGCCATTAAAGG+TGG | - | chr7_4:7908892-7908911 | Msa1138440:CDS | 45.0% | |
| !! | AAGATTTTCGGCTACTGGCT+TGG | + | chr7_4:7909170-7909189 | None:intergenic | 45.0% |
| GATACAGCCAGTCAAGATCA+AGG | + | chr7_4:7909239-7909258 | None:intergenic | 45.0% | |
| GCAGCAGATAACAACAGTAC+CGG | + | chr7_4:7909351-7909370 | None:intergenic | 45.0% | |
| ACTGTTGTTATCTGCTGCAG+TGG | - | chr7_4:7909353-7909372 | Msa1138440:CDS | 45.0% | |
| CTGTTGTTATCTGCTGCAGT+GGG | - | chr7_4:7909354-7909373 | Msa1138440:CDS | 45.0% | |
| ! | ACTCCATTGAAGTACTACCC+AGG | - | chr7_4:7909393-7909412 | Msa1138440:CDS | 45.0% |
| TGACCTGGGTAGTACTTCAA+TGG | + | chr7_4:7909399-7909418 | None:intergenic | 45.0% | |
| !! | GTTGGGTTTTTCAAAGGAGC+GGG | + | chr7_4:7909507-7909526 | None:intergenic | 45.0% |
| ! | GCTCCTTTGAAAAACCCAAC+TGG | - | chr7_4:7909507-7909526 | Msa1138440:CDS | 45.0% |
| !! | TGGCCAGTTGGGTTTTTCAA+AGG | + | chr7_4:7909513-7909532 | None:intergenic | 45.0% |
| CTGCACTAAATTGGCCAGTT+GGG | + | chr7_4:7909524-7909543 | None:intergenic | 45.0% | |
| TCTGCACTAAATTGGCCAGT+TGG | + | chr7_4:7909525-7909544 | None:intergenic | 45.0% | |
| GGCCAATTTAGTGCAGATGA+AGG | - | chr7_4:7909528-7909547 | Msa1138440:CDS | 45.0% | |
| GAAGGTCTCACAAAATGGGT+AGG | - | chr7_4:7909546-7909565 | Msa1138440:CDS | 45.0% | |
| CTCACAAAATGGGTAGGGTT+AGG | - | chr7_4:7909552-7909571 | Msa1138440:CDS | 45.0% | |
| GCACTTGGTTTACCCTTCTA+TGG | - | chr7_4:7909594-7909613 | Msa1138440:CDS | 45.0% | |
| ACTGCTTCAAAGGGACAGAT+TGG | - | chr7_4:7909754-7909773 | Msa1138440:CDS | 45.0% | |
| CACTCAGAGTATATCTGCCA+AGG | - | chr7_4:7909791-7909810 | Msa1138440:CDS | 45.0% | |
| TTGCTTGGCATAAGCAACCT+TGG | + | chr7_4:7909811-7909830 | None:intergenic | 45.0% | |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7_4:7909157-7909176 | None:intergenic | 50.0% |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7_4:7909229-7909248 | Msa1138440:CDS | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr7_4:7909343-7909362 | None:intergenic | 50.0% |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7_4:7909357-7909376 | Msa1138440:CDS | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7_4:7909660-7909679 | Msa1138440:CDS | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7_4:7909661-7909680 | Msa1138440:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7_4:7909662-7909681 | Msa1138440:CDS | 50.0% | |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7_4:7909677-7909696 | Msa1138440:CDS | 50.0% | |
| !! | ACTGGCTTGGCTAGACATGT+TGG | + | chr7_4:7909157-7909176 | None:intergenic | 50.0% |
| ! | TCCATGGCCTTGATCTTGAC+TGG | - | chr7_4:7909229-7909248 | Msa1138440:CDS | 50.0% |
| !! | TAACAACAGTACCGGCTTGC+CGG | + | chr7_4:7909343-7909362 | None:intergenic | 50.0% |
| TTGTTATCTGCTGCAGTGGG+TGG | - | chr7_4:7909357-7909376 | Msa1138440:CDS | 50.0% | |
| AGTAAAGCTACGCAGGGACT+AGG | - | chr7_4:7909660-7909679 | Msa1138440:CDS | 50.0% | |
| GTAAAGCTACGCAGGGACTA+GGG | - | chr7_4:7909661-7909680 | Msa1138440:CDS | 50.0% | |
| TAAAGCTACGCAGGGACTAG+GGG | - | chr7_4:7909662-7909681 | Msa1138440:CDS | 50.0% | |
| ACTAGGGGCAGTGAAGTACA+AGG | - | chr7_4:7909677-7909696 | Msa1138440:CDS | 50.0% | |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7_4:7909233-7909252 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7_4:7909489-7909508 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7_4:7909504-7909523 | None:intergenic | 55.0% |
| GCCAGTCAAGATCAAGGCCA+TGG | + | chr7_4:7909233-7909252 | None:intergenic | 55.0% | |
| GCGGGTGGTTGTGTTTGAGT+TGG | + | chr7_4:7909489-7909508 | None:intergenic | 55.0% | |
| !! | GGGTTTTTCAAAGGAGCGGG+TGG | + | chr7_4:7909504-7909523 | None:intergenic | 55.0% |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7_4:7909299-7909318 | Msa1138440:CDS | 60.0% | |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7_4:7909321-7909340 | Msa1138440:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7_4:7909325-7909344 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7_4:7909329-7909348 | Msa1138440:CDS | 60.0% | |
| TACAGCGTGGAGAGCTGCTG+TGG | - | chr7_4:7909299-7909318 | Msa1138440:CDS | 60.0% | |
| GCCGCAGAGTCTAGGAGTTC+CGG | - | chr7_4:7909321-7909340 | Msa1138440:CDS | 60.0% | |
| GCCGGAACTCCTAGACTCTG+CGG | + | chr7_4:7909325-7909344 | None:intergenic | 60.0% | |
| GTCTAGGAGTTCCGGCAAGC+CGG | - | chr7_4:7909329-7909348 | Msa1138440:CDS | 60.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7_4:7909313-7909332 | Msa1138440:CDS | 65.0% | |
| CTGCTGTGGCCGCAGAGTCT+AGG | - | chr7_4:7909313-7909332 | Msa1138440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 7908817 | 7909923 | 7908817 | ID=Msa1138440;Name=Msa1138440 |
| chr7_4 | mRNA | 7908817 | 7909923 | 7908817 | ID=Msa1138440-mRNA-1;Parent=Msa1138440;Name=Msa1138440-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|368 |
| chr7_4 | exon | 7908817 | 7909923 | 7908817 | ID=Msa1138440-mRNA-1:exon:2181;Parent=Msa1138440-mRNA-1 |
| chr7_4 | CDS | 7908817 | 7909923 | 7908817 | ID=Msa1138440-mRNA-1:cds;Parent=Msa1138440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
