Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009970 | RHN44565.1 | 100.000 | 52 | 0 | 0 | 1 | 52 | 1 | 52 | 3.30e-28 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009970 | A0A396H0C5 | 100.000 | 52 | 0 | 0 | 1 | 52 | 1 | 52 | 1.58e-28 | 104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074180 | Msa1009970 | 0.802000 | 6.905695e-49 | -8.615850e-47 |
| Msa0792480 | Msa1009970 | 0.831701 | 1.437508e-55 | -8.615850e-47 |
| Msa0402510 | Msa1009970 | 0.820032 | 8.496684e-53 | -8.615850e-47 |
| Msa1009970 | Msa1009980 | 0.833805 | 4.318778e-56 | -8.615850e-47 |
| Msa1009970 | Msa1009990 | 0.835706 | 1.435145e-56 | -8.615850e-47 |
| Msa1009970 | Msa1051480 | 0.829868 | 4.046751e-55 | -8.615850e-47 |
| Msa1009970 | Msa1051490 | 0.827951 | 1.178197e-54 | -8.615850e-47 |
| Msa1009970 | Msa1097650 | 0.811937 | 5.453770e-51 | -8.615850e-47 |
| Msa1009970 | Msa1097710 | 0.980870 | 3.150028e-151 | -8.615850e-47 |
| Msa1009970 | Msa1139790 | 0.820042 | 8.450681e-53 | -8.615850e-47 |
| Msa1009970 | Msa1139800 | 0.824476 | 7.907993e-54 | -8.615850e-47 |
| Msa1009970 | Msa1186960 | 0.820983 | 5.139371e-53 | -8.615850e-47 |
| Msa1009970 | Msa1374930 | 0.819374 | 1.201250e-52 | -8.615850e-47 |
| Msa0491730 | Msa1009970 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
| Msa0497160 | Msa1009970 | 0.846758 | 1.775699e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009970 | MtrunA17_Chr7g0220791 | 100.000 | 52 | 0 | 0 | 1 | 52 | 1 | 52 | 3.04e-32 | 104 |
| Msa1009970 | MtrunA17_Chr7g0220801 | 100.000 | 52 | 0 | 0 | 1 | 52 | 1 | 52 | 3.04e-32 | 104 |
| Msa1009970 | MtrunA17_Chr7g0220831 | 96.154 | 52 | 2 | 0 | 1 | 52 | 1 | 52 | 7.93e-31 | 101 |
| Msa1009970 | MtrunA17_Chr4g0020171 | 96.154 | 52 | 2 | 0 | 1 | 52 | 1 | 52 | 7.93e-31 | 101 |
| Msa1009970 | MtrunA17_Chr8g0368651 | 76.923 | 52 | 11 | 1 | 1 | 52 | 1 | 51 | 5.37e-17 | 66.2 |
| Msa1009970 | MtrunA17_Chr4g0021531 | 75.000 | 36 | 9 | 0 | 17 | 52 | 19 | 54 | 3.19e-16 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 141 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATGTGGCTCTCCTATTT+TGG | 0.163850 | 7_1:-12454496 | Msa1009970:three_prime_UTR |
| GAAACACACTTGTTCCTTAT+TGG | 0.179268 | 7_1:-12454757 | Msa1009970:three_prime_UTR |
| CCTCACTCCAGCAACATTTC+AGG | 0.206600 | 7_1:+12455432 | None:intergenic |
| TGATTATGTTTACTGTTATC+AGG | 0.213232 | 7_1:-12455349 | Msa1009970:three_prime_UTR |
| GAGAATTAGGTTTCGGAGAT+TGG | 0.217278 | 7_1:+12457988 | None:intergenic |
| AAGTCGCATATGTCAGATTT+TGG | 0.242078 | 7_1:+12455806 | None:intergenic |
| CGCGGAAGCTTCATCTTTCC+TGG | 0.256495 | 7_1:-12456118 | Msa1009970:three_prime_UTR |
| AATCTCGTCAATTTGGTCTT+TGG | 0.259345 | 7_1:+12456345 | None:intergenic |
| AGATTGAAGAGAAGAGAATT+AGG | 0.259364 | 7_1:+12457975 | None:intergenic |
| AAATTTCCTTTGGAGGTTAA+AGG | 0.271383 | 7_1:-12455557 | Msa1009970:three_prime_UTR |
| TTCGGAGATTGGAATTGATT+TGG | 0.276556 | 7_1:+12457999 | None:intergenic |
| GCTGTTCTTGACAGCTATTT+TGG | 0.280170 | 7_1:-12456055 | Msa1009970:three_prime_UTR |
| TTCTCTGACCCTGCTGGATT+AGG | 0.287048 | 7_1:-12456382 | Msa1009970:three_prime_UTR |
| CGATTTCTTCTCAATGAATC+AGG | 0.290392 | 7_1:+12457790 | None:intergenic |
| ATTTATTTCGAAATATAATA+AGG | 0.290488 | 7_1:+12455246 | None:intergenic |
| TGACTCGCTTAAATTTATTC+AGG | 0.295150 | 7_1:+12455319 | None:intergenic |
| ATCACGTGGTTTGTGTTTCC+TGG | 0.304061 | 7_1:+12454649 | None:intergenic |
| AACACATTCCAAGCCAAAAT+AGG | 0.315725 | 7_1:+12454483 | None:intergenic |
| CAAACCATCCTGAGATTTCC+TGG | 0.321306 | 7_1:-12456634 | Msa1009970:exon |
| TCGGAGATTGGAATTGATTT+GGG | 0.328378 | 7_1:+12458000 | None:intergenic |
| GTTTCAGAATCTCGTCAATT+TGG | 0.331728 | 7_1:+12456338 | None:intergenic |
| GGTTTGATGACTAAGAATTC+TGG | 0.333324 | 7_1:-12455845 | Msa1009970:three_prime_UTR |
| GCATAGCTGAATCCATCTTC+AGG | 0.343318 | 7_1:+12455713 | None:intergenic |
| TGAGAACGAGGAGGAAGTTA+AGG | 0.347960 | 7_1:-12455408 | Msa1009970:three_prime_UTR |
| GAGGAGGGAGGACAAGAAAA+AGG | 0.353170 | 7_1:+12456554 | None:intergenic |
| TACCATTCCTATAGCCAATA+AGG | 0.354506 | 7_1:+12454743 | None:intergenic |
| ATGCTGATAAGTCACAAATT+TGG | 0.357352 | 7_1:-12455994 | Msa1009970:three_prime_UTR |
| AAGAGAAGAGAATTAGGTTT+CGG | 0.359561 | 7_1:+12457981 | None:intergenic |
| ACTTGTTCCTTATTGGCTAT+AGG | 0.366195 | 7_1:-12454750 | Msa1009970:three_prime_UTR |
| AAAACTTGACAAATTTCCTT+TGG | 0.369192 | 7_1:-12455567 | Msa1009970:three_prime_UTR |
| GAGAGGTGCTTCGTACAAAA+AGG | 0.372510 | 7_1:+12456851 | None:intergenic |
| GTATTTGTTTAATATGTGTT+TGG | 0.392123 | 7_1:-12454443 | Msa1009970:three_prime_UTR |
| ACTTCGAATTTGAACCTTGC+GGG | 0.393253 | 7_1:-12455787 | Msa1009970:three_prime_UTR |
| GCTTCACCGGAAGCTGTCTA+TGG | 0.396357 | 7_1:-12455941 | Msa1009970:three_prime_UTR |
| TCAAGGCCATAGACAGCTTC+CGG | 0.398954 | 7_1:+12455935 | None:intergenic |
| TCGGCAAGCTTAAGAATTGC+AGG | 0.407592 | 7_1:+12456178 | None:intergenic |
| CGTACCTTTGTTCGAAATGA+TGG | 0.419044 | 7_1:-12455476 | Msa1009970:three_prime_UTR |
| GGTCTACCCTGAAATGTTGC+TGG | 0.420536 | 7_1:-12455439 | Msa1009970:three_prime_UTR |
| TTCTAATACGTCAATGCACT+TGG | 0.422787 | 7_1:-12454594 | Msa1009970:three_prime_UTR |
| AACCAGTCATGCACATTTCA+AGG | 0.440811 | 7_1:+12455918 | None:intergenic |
| TAAGGAACAAGTGTGTTTCC+TGG | 0.442570 | 7_1:+12454761 | None:intergenic |
| ACTTGACAAATTTCCTTTGG+AGG | 0.442578 | 7_1:-12455564 | Msa1009970:three_prime_UTR |
| TGACTAAGAATTCTGGAATC+AGG | 0.442912 | 7_1:-12455838 | Msa1009970:three_prime_UTR |
| AATAATAGGTATGTGGCTAT+AGG | 0.447697 | 7_1:-12454838 | Msa1009970:intron |
| TACTCGATGAACGGAATTGA+AGG | 0.451132 | 7_1:-12455764 | Msa1009970:three_prime_UTR |
| TGAGGGAAGGATTGAGCTCC+AGG | 0.451159 | 7_1:+12456100 | None:intergenic |
| GATTATGTTTACTGTTATCA+GGG | 0.461194 | 7_1:-12455348 | Msa1009970:three_prime_UTR |
| ATCCATGTCACCCCTGAAGA+TGG | 0.462649 | 7_1:-12455725 | Msa1009970:three_prime_UTR |
| GGCCTTGAAATGTGCATGAC+TGG | 0.467615 | 7_1:-12455920 | Msa1009970:three_prime_UTR |
| TTCAGGGGTGACATGGATAG+TGG | 0.468582 | 7_1:+12455730 | None:intergenic |
| CACAGCAATGTTTAGACCAT+CGG | 0.469271 | 7_1:+12456159 | None:intergenic |
| AAGGAGATATAATACTACTT+TGG | 0.470394 | 7_1:-12455389 | Msa1009970:three_prime_UTR |
| TGTGAACTTGTGGCTAGAAA+TGG | 0.474140 | 7_1:-12454701 | Msa1009970:three_prime_UTR |
| GAAAGAATCAATGAAGTGCT+TGG | 0.474283 | 7_1:-12455521 | Msa1009970:three_prime_UTR |
| ATACATACACGTATAGCTTC+AGG | 0.475006 | 7_1:+12454400 | None:intergenic |
| GTGAAGTGTGAATGAACTAA+TGG | 0.476790 | 7_1:-12456916 | Msa1009970:exon |
| TTCCTTATTGGCTATAGGAA+TGG | 0.478303 | 7_1:-12454745 | Msa1009970:three_prime_UTR |
| AAGACAGATGCATCTTCAGC+AGG | 0.478706 | 7_1:-12455866 | Msa1009970:three_prime_UTR |
| TTTGGTCTTTGGACAATGCT+CGG | 0.490726 | 7_1:+12456356 | None:intergenic |
| CTCACTCCAGCAACATTTCA+GGG | 0.494047 | 7_1:+12455433 | None:intergenic |
| TCAACAATGGTGCATTCTGC+TGG | 0.497159 | 7_1:+12456316 | None:intergenic |
| GTTTGTGTTTCCTGGTCCTA+CGG | 0.497609 | 7_1:+12454657 | None:intergenic |
| CATAGCTGAATCCATCTTCA+GGG | 0.503323 | 7_1:+12455714 | None:intergenic |
| ATCACAACCCAGGAAATCTC+AGG | 0.506471 | 7_1:+12456626 | None:intergenic |
| TCTAAACATTGCTGTGAAAT+CGG | 0.506691 | 7_1:-12456152 | Msa1009970:three_prime_UTR |
| TACAGAAATGAAGGAAATTG+AGG | 0.510997 | 7_1:+12457924 | None:intergenic |
| AAGCAATTTCGTAGTCCCGC+AGG | 0.513037 | 7_1:+12456210 | None:intergenic |
| CTCTGAACGAACTTGTTGCA+AGG | 0.516760 | 7_1:-12455652 | Msa1009970:three_prime_UTR |
| GCTCGGAGGCCTAATCCAGC+AGG | 0.517190 | 7_1:+12456373 | None:intergenic |
| TCATGGTCATCTTGACTCAA+AGG | 0.518087 | 7_1:+12456473 | None:intergenic |
| AAATGCACTTACAGAAATGA+AGG | 0.523434 | 7_1:+12457915 | None:intergenic |
| TACATACACGTATAGCTTCA+GGG | 0.526318 | 7_1:+12454401 | None:intergenic |
| GACTGGTTTAGATAAAGAAA+AGG | 0.528480 | 7_1:-12455903 | Msa1009970:three_prime_UTR |
| CATCACCCATCATGTAAGCT+TGG | 0.530202 | 7_1:+12456014 | None:intergenic |
| TTGTATCCTTTAACCTCCAA+AGG | 0.534196 | 7_1:+12455551 | None:intergenic |
| CAACATTTCAGGGTAGACCT+TGG | 0.534721 | 7_1:+12455443 | None:intergenic |
| ATTCAATCATCAAACGATGA+TGG | 0.535335 | 7_1:-12455196 | Msa1009970:three_prime_UTR |
| GTCAAGAACAGCAACTTCCT+CGG | 0.536338 | 7_1:+12456066 | None:intergenic |
| ATTGAAGACGTTCGACCTAA+CGG | 0.537316 | 7_1:-12456819 | Msa1009970:CDS |
| TCTAATACGTCAATGCACTT+GGG | 0.541123 | 7_1:-12454593 | Msa1009970:three_prime_UTR |
| AAGTGTGTTTCCTGGTCCTA+CGG | 0.541710 | 7_1:+12454769 | None:intergenic |
| ATCCATCTTCAGGGGTGACA+TGG | 0.542033 | 7_1:+12455723 | None:intergenic |
| TCTGAACGAACTTGTTGCAA+GGG | 0.547830 | 7_1:-12455651 | Msa1009970:three_prime_UTR |
| AACTTATCATCAAAACCTGC+GGG | 0.549743 | 7_1:-12456225 | Msa1009970:three_prime_UTR |
| CTATGCAAGCTTTGAAGCAG+TGG | 0.552481 | 7_1:-12455696 | Msa1009970:three_prime_UTR |
| TGCTAAGCTAGACGCTTCAC+CGG | 0.556532 | 7_1:-12455954 | Msa1009970:three_prime_UTR |
| AATCGAATCTCCGTAGGACC+AGG | 0.559132 | 7_1:-12454667 | Msa1009970:three_prime_UTR |
| AATCGAATCTCCGTAGGACC+AGG | 0.559132 | 7_1:-12454779 | Msa1009970:three_prime_UTR |
| TGAGGACTGAAAGAGAGAAA+CGG | 0.561178 | 7_1:+12457942 | None:intergenic |
| TGATAGCATATCTAATCTAA+AGG | 0.565117 | 7_1:+12454625 | None:intergenic |
| TGCCTAAAATAATAGGTATG+TGG | 0.565146 | 7_1:-12454845 | Msa1009970:intron |
| AATGAAGTGCTTGGAGAAGA+CGG | 0.567752 | 7_1:-12455512 | Msa1009970:three_prime_UTR |
| TTGGTTAATCGAATCTCCGT+AGG | 0.569588 | 7_1:-12454673 | Msa1009970:three_prime_UTR |
| CCGTTCATCGAGTACCCGCA+AGG | 0.572227 | 7_1:+12455773 | None:intergenic |
| CGGTAGCCAAGCTTACATGA+TGG | 0.573036 | 7_1:-12456020 | Msa1009970:three_prime_UTR |
| AAACCATCCTGAGATTTCCT+GGG | 0.577254 | 7_1:-12456633 | Msa1009970:exon |
| CATCATGTAAGCTTGGCTAC+CGG | 0.578005 | 7_1:+12456021 | None:intergenic |
| TGAATAAGCTTGACTCGGAT+AGG | 0.578524 | 7_1:+12456260 | None:intergenic |
| CTATAGGAGTTGTGAACTTG+TGG | 0.579705 | 7_1:-12454822 | Msa1009970:three_prime_UTR |
| TTTGTAGAGAAAGGGAACAA+AGG | 0.590513 | 7_1:+12456514 | None:intergenic |
| GCAATTCTTAAGCTTGCCGA+TGG | 0.593187 | 7_1:-12456175 | Msa1009970:three_prime_UTR |
| ATGATGGCTGCTCATCTCCA+AGG | 0.593841 | 7_1:-12455460 | Msa1009970:three_prime_UTR |
| GGTAGCCAAGCTTACATGAT+GGG | 0.595267 | 7_1:-12456019 | Msa1009970:three_prime_UTR |
| TGTGGCTAGAAATGAAATGT+TGG | 0.595913 | 7_1:-12454804 | Msa1009970:three_prime_UTR |
| AGAAATCGATAAGCATAGAT+CGG | 0.596310 | 7_1:-12457775 | Msa1009970:five_prime_UTR |
| TTGGCTATAGGAATGGTATG+AGG | 0.600434 | 7_1:-12454738 | Msa1009970:three_prime_UTR |
| TATGCAAGCTTTGAAGCAGT+GGG | 0.601223 | 7_1:-12455695 | Msa1009970:three_prime_UTR |
| ACCATGACAAACTCAGCTAT+CGG | 0.606560 | 7_1:-12456457 | Msa1009970:three_prime_UTR |
| AATGCAACAGAAAACTCAGC+TGG | 0.608895 | 7_1:+12455611 | None:intergenic |
| AATGAACTAATGGAGTCTAA+AGG | 0.613513 | 7_1:-12456906 | Msa1009970:exon |
| ACCGATAGCTGAGTTTGTCA+TGG | 0.615180 | 7_1:+12456456 | None:intergenic |
| CTAATACGTCAATGCACTTG+GGG | 0.617154 | 7_1:-12454592 | Msa1009970:three_prime_UTR |
| AAAGTTACGTTGTGAACTTG+TGG | 0.617428 | 7_1:-12454711 | Msa1009970:three_prime_UTR |
| TCCTCGGAAAAGCTTCGATG+AGG | 0.618294 | 7_1:+12456082 | None:intergenic |
| CCTCGGAAAAGCTTCGATGA+GGG | 0.624053 | 7_1:+12456083 | None:intergenic |
| GGAAAAGCTTCGATGAGGGA+AGG | 0.627007 | 7_1:+12456087 | None:intergenic |
| CCTTGCGGGTACTCGATGAA+CGG | 0.629304 | 7_1:-12455773 | Msa1009970:three_prime_UTR |
| TTGGTTAATCGAATCTCCGT+AGG | 0.631188 | 7_1:-12454785 | Msa1009970:three_prime_UTR |
| AACATGCAAAGTACATTGCT+AGG | 0.631536 | 7_1:-12454541 | Msa1009970:three_prime_UTR |
| ATTAGATAGTGAGTCAACAA+TGG | 0.640442 | 7_1:+12456303 | None:intergenic |
| GAACTAATGGAGTCTAAAGG+TGG | 0.640546 | 7_1:-12456903 | Msa1009970:exon |
| CCTGAAATGTTGCTGGAGTG+AGG | 0.643570 | 7_1:-12455432 | Msa1009970:three_prime_UTR |
| CGGCAAGCTTAAGAATTGCA+GGG | 0.643796 | 7_1:+12456179 | None:intergenic |
| AAACTTATCATCAAAACCTG+CGG | 0.648431 | 7_1:-12456226 | Msa1009970:three_prime_UTR |
| CTGGAGTGAGGATGAGAACG+AGG | 0.648538 | 7_1:-12455420 | Msa1009970:three_prime_UTR |
| GCAGCCATCATTTCGAACAA+AGG | 0.652571 | 7_1:+12455472 | None:intergenic |
| CATCATTTCGAACAAAGGTA+CGG | 0.654774 | 7_1:+12455477 | None:intergenic |
| ATAGATGAATAAGCTTGACT+CGG | 0.663143 | 7_1:+12456255 | None:intergenic |
| GGTCTTTGGACAATGCTCGG+AGG | 0.663736 | 7_1:+12456359 | None:intergenic |
| GCATTGCACATTGATGCGAA+TGG | 0.665215 | 7_1:-12455593 | Msa1009970:three_prime_UTR |
| CTCGGAGGCCTAATCCAGCA+GGG | 0.668437 | 7_1:+12456374 | None:intergenic |
| GACTTCGAATTTGAACCTTG+CGG | 0.668468 | 7_1:-12455788 | Msa1009970:three_prime_UTR |
| GACAGCATTGAGAACACATG+TGG | 0.669414 | 7_1:-12454510 | Msa1009970:three_prime_UTR |
| CAACCCAGGAAATCTCAGGA+TGG | 0.672736 | 7_1:+12456630 | None:intergenic |
| GAGGTTAAAGGATACAACTG+TGG | 0.681618 | 7_1:-12455545 | Msa1009970:three_prime_UTR |
| ATAGCTGAATCCATCTTCAG+GGG | 0.696514 | 7_1:+12455715 | None:intergenic |
| GAGTGAGGATGAGAACGAGG+AGG | 0.703166 | 7_1:-12455417 | Msa1009970:three_prime_UTR |
| GAAGACGTTCGACCTAACGG+TGG | 0.747756 | 7_1:-12456816 | Msa1009970:CDS |
| TCTAATCTAAAGGAATCACG+TGG | 0.749503 | 7_1:+12454635 | None:intergenic |
| AAATCGGTGAGATACACTCG+CGG | 0.764779 | 7_1:-12456136 | Msa1009970:three_prime_UTR |
| TCTTCAATGATGTAACCGAG+AGG | 0.773111 | 7_1:+12456834 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTCGAAATATAATA+AGG | + | chr7_1:12457166-12457185 | None:intergenic | 10.0% |
| !!! | GTTTTGATTTTGTTTTATTT+AGG | - | chr7_1:12454582-12454601 | Msa1009970:three_prime_UTR | 15.0% |
| !!! | TATGATTATTTTCCAATTTT+TGG | - | chr7_1:12454816-12454835 | Msa1009970:three_prime_UTR | 15.0% |
| !! | TTTCATAATTATCCAAAAAT+TGG | + | chr7_1:12454831-12454850 | None:intergenic | 15.0% |
| !! | ATAATGTTAACATTAATCAA+AGG | + | chr7_1:12455681-12455700 | None:intergenic | 15.0% |
| !!! | TTGATATTGATTAAAGTTAT+GGG | - | chr7_1:12457298-12457317 | Msa1009970:intron | 15.0% |
| !! | ATAAAACAAAATCAAAACAG+AGG | + | chr7_1:12454580-12454599 | None:intergenic | 20.0% |
| !!! | CTTTTCTGTTTATTTTCATT+TGG | - | chr7_1:12455158-12455177 | Msa1009970:intron | 20.0% |
| !! | TATTCAAGATGTATTATTTC+AGG | - | chr7_1:12455245-12455264 | Msa1009970:three_prime_UTR | 20.0% |
| !!! | GTTTAGCTTTTTTTTAACAA+TGG | + | chr7_1:12455338-12455357 | None:intergenic | 20.0% |
| !! | AAAGGAATTGAAATTGAAAT+GGG | + | chr7_1:12455663-12455682 | None:intergenic | 20.0% |
| !! | TATAGTATATTGCATAAGAT+TGG | - | chr7_1:12455698-12455717 | Msa1009970:three_prime_UTR | 20.0% |
| !! | ACTGCATAATAAAGAAAAAA+GGG | + | chr7_1:12455748-12455767 | None:intergenic | 20.0% |
| !!! | CTTGATATTGATTAAAGTTA+TGG | - | chr7_1:12457297-12457316 | Msa1009970:intron | 20.0% |
| !! | AATTATTCAGATTTATCAGA+TGG | - | chr7_1:12457342-12457361 | Msa1009970:intron | 20.0% |
| !! | GTATTTGTTTAATATGTGTT+TGG | - | chr7_1:12457966-12457985 | Msa1009970:five_prime_UTR | 20.0% |
| !! | ACTCACAGTTTTTAAACAAT+TGG | + | chr7_1:12454663-12454682 | None:intergenic | 25.0% |
| !!! | CTGTTTTAGGTTATTGTTTA+TGG | - | chr7_1:12454711-12454730 | Msa1009970:three_prime_UTR | 25.0% |
| !! | TAGGTTATTGTTTATGGTTT+TGG | - | chr7_1:12454717-12454736 | Msa1009970:three_prime_UTR | 25.0% |
| !! | AAAGCATTTGATGATTGAAA+CGG | - | chr7_1:12454922-12454941 | Msa1009970:intron | 25.0% |
| ! | CAAAAAACAACAGTAAGAAA+AGG | + | chr7_1:12455028-12455047 | None:intergenic | 25.0% |
| !! | TTATTTTCATTTGGTTGCAT+AGG | - | chr7_1:12455167-12455186 | Msa1009970:intron | 25.0% |
| ! | ATTTACACTTTCAATTGCAA+TGG | - | chr7_1:12455193-12455212 | Msa1009970:three_prime_UTR | 25.0% |
| ! | GTACTATCATTTACCAATAT+TGG | - | chr7_1:12455215-12455234 | Msa1009970:three_prime_UTR | 25.0% |
| ! | TGAATAACATACACCAATAT+TGG | + | chr7_1:12455231-12455250 | None:intergenic | 25.0% |
| !! | TTATAACATTTTGTAATCCC+TGG | - | chr7_1:12455427-12455446 | Msa1009970:three_prime_UTR | 25.0% |
| ! | CAAAGGAATTGAAATTGAAA+TGG | + | chr7_1:12455664-12455683 | None:intergenic | 25.0% |
| ! | CACTGCATAATAAAGAAAAA+AGG | + | chr7_1:12455749-12455768 | None:intergenic | 25.0% |
| !!! | TTTTGTTGTTTGTAGAGAAA+GGG | + | chr7_1:12455906-12455925 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTGTAGAGAA+AGG | + | chr7_1:12455907-12455926 | None:intergenic | 25.0% |
| !!! | GAGATAACTTTTTTCGAAAA+TGG | - | chr7_1:12456000-12456019 | Msa1009970:three_prime_UTR | 25.0% |
| ! | AAAACTTGACAAATTTCCTT+TGG | - | chr7_1:12456842-12456861 | Msa1009970:CDS | 25.0% |
| ! | AAGGAGATATAATACTACTT+TGG | - | chr7_1:12457020-12457039 | Msa1009970:intron | 25.0% |
| ! | TGATTATGTTTACTGTTATC+AGG | - | chr7_1:12457060-12457079 | Msa1009970:intron | 25.0% |
| ! | GATTATGTTTACTGTTATCA+GGG | - | chr7_1:12457061-12457080 | Msa1009970:intron | 25.0% |
| !!! | CTTTTATTTTTGCAACAATG+GGG | + | chr7_1:12457239-12457258 | None:intergenic | 25.0% |
| !!! | CCTTTTATTTTTGCAACAAT+GGG | + | chr7_1:12457240-12457259 | None:intergenic | 25.0% |
| !!! | TCCTTTTATTTTTGCAACAA+TGG | + | chr7_1:12457241-12457260 | None:intergenic | 25.0% |
| ! | TAAAGTTATTGCAATGTTGT+TGG | + | chr7_1:12457503-12457522 | None:intergenic | 25.0% |
| !!! | ATTTATTCACTTTTTCTGTG+TGG | - | chr7_1:12457533-12457552 | Msa1009970:intron | 25.0% |
| ! | TGATAGCATATCTAATCTAA+AGG | + | chr7_1:12457787-12457806 | None:intergenic | 25.0% |
| AAGAGAAGAGAATTAGGTTT+CGG | + | chr7_1:12454431-12454450 | None:intergenic | 30.0% | |
| AGATTGAAGAGAAGAGAATT+AGG | + | chr7_1:12454437-12454456 | None:intergenic | 30.0% | |
| TACAGAAATGAAGGAAATTG+AGG | + | chr7_1:12454488-12454507 | None:intergenic | 30.0% | |
| AAATGCACTTACAGAAATGA+AGG | + | chr7_1:12454497-12454516 | None:intergenic | 30.0% | |
| CAATTGAGAAGAATACATAG+AGG | + | chr7_1:12454525-12454544 | None:intergenic | 30.0% | |
| AGAAATCGATAAGCATAGAT+CGG | - | chr7_1:12454634-12454653 | Msa1009970:three_prime_UTR | 30.0% | |
| !!! | TCATCTTTTTGTGCTGTTTT+AGG | - | chr7_1:12454698-12454717 | Msa1009970:three_prime_UTR | 30.0% |
| TTACAGATACCACATAGATT+TGG | - | chr7_1:12455095-12455114 | Msa1009970:intron | 30.0% | |
| GATTTCTGCGCAATTATTAT+TGG | - | chr7_1:12455363-12455382 | Msa1009970:three_prime_UTR | 30.0% | |
| TTAGTCACAAAAATAGACCA+GGG | + | chr7_1:12455447-12455466 | None:intergenic | 30.0% | |
| AATGAACTAATGGAGTCTAA+AGG | - | chr7_1:12455503-12455522 | Msa1009970:three_prime_UTR | 30.0% | |
| ! | TTGCATAAGATTGGTTGATT+TGG | - | chr7_1:12455707-12455726 | Msa1009970:three_prime_UTR | 30.0% |
| TAAAAACTATATCACAACCC+AGG | + | chr7_1:12455796-12455815 | None:intergenic | 30.0% | |
| ! | TGGGTTGTGATATAGTTTTT+AGG | - | chr7_1:12455795-12455814 | Msa1009970:three_prime_UTR | 30.0% |
| ATTAGATAGTGAGTCAACAA+TGG | + | chr7_1:12456109-12456128 | None:intergenic | 30.0% | |
| ATAGATGAATAAGCTTGACT+CGG | + | chr7_1:12456157-12456176 | None:intergenic | 30.0% | |
| AAACTTATCATCAAAACCTG+CGG | - | chr7_1:12456183-12456202 | Msa1009970:three_prime_UTR | 30.0% | |
| TCTAAACATTGCTGTGAAAT+CGG | - | chr7_1:12456257-12456276 | Msa1009970:three_prime_UTR | 30.0% | |
| ATGCTGATAAGTCACAAATT+TGG | - | chr7_1:12456415-12456434 | Msa1009970:three_prime_UTR | 30.0% | |
| !! | GACTGGTTTAGATAAAGAAA+AGG | - | chr7_1:12456506-12456525 | Msa1009970:three_prime_UTR | 30.0% |
| ! | AAATTTCCTTTGGAGGTTAA+AGG | - | chr7_1:12456852-12456871 | Msa1009970:CDS | 30.0% |
| TGACTCGCTTAAATTTATTC+AGG | + | chr7_1:12457093-12457112 | None:intergenic | 30.0% | |
| ATTCAATCATCAAACGATGA+TGG | - | chr7_1:12457213-12457232 | Msa1009970:intron | 30.0% | |
| CCCATTGTTGCAAAAATAAA+AGG | - | chr7_1:12457237-12457256 | Msa1009970:intron | 30.0% | |
| !!! | ATTTTTTCTCCGCTCTTATT+GGG | + | chr7_1:12457402-12457421 | None:intergenic | 30.0% |
| !!! | AATTTTTTCTCCGCTCTTAT+TGG | + | chr7_1:12457403-12457422 | None:intergenic | 30.0% |
| TGTGATGTGCCTAAAATAAT+AGG | - | chr7_1:12457557-12457576 | Msa1009970:intron | 30.0% | |
| TGCCTAAAATAATAGGTATG+TGG | - | chr7_1:12457564-12457583 | Msa1009970:intron | 30.0% | |
| ! | AGCCACATACCTATTATTTT+AGG | + | chr7_1:12457569-12457588 | None:intergenic | 30.0% |
| AATAATAGGTATGTGGCTAT+AGG | - | chr7_1:12457571-12457590 | Msa1009970:intron | 30.0% | |
| ! | TATGTGTTTGGATCAGTTTT+TGG | - | chr7_1:12457978-12457997 | Msa1009970:five_prime_UTR | 30.0% |
| ! | TCGGAGATTGGAATTGATTT+GGG | + | chr7_1:12454412-12454431 | None:intergenic | 35.0% |
| TTCGGAGATTGGAATTGATT+TGG | + | chr7_1:12454413-12454432 | None:intergenic | 35.0% | |
| CGATTTCTTCTCAATGAATC+AGG | + | chr7_1:12454622-12454641 | None:intergenic | 35.0% | |
| ! | TTTGATGATTGAAACGGATC+TGG | - | chr7_1:12454928-12454947 | Msa1009970:intron | 35.0% |
| ! | TTGATGATTGAAACGGATCT+GGG | - | chr7_1:12454929-12454948 | Msa1009970:intron | 35.0% |
| GTTAGTCACAAAAATAGACC+AGG | + | chr7_1:12455448-12455467 | None:intergenic | 35.0% | |
| GTGAAGTGTGAATGAACTAA+TGG | - | chr7_1:12455493-12455512 | Msa1009970:three_prime_UTR | 35.0% | |
| ! | AATTTTTCTACTCCACCGTT+AGG | + | chr7_1:12455608-12455627 | None:intergenic | 35.0% |
| GAAGAAAAAAGCAAAGAGGA+GGG | + | chr7_1:12455873-12455892 | None:intergenic | 35.0% | |
| TGAAGAAAAAAGCAAAGAGG+AGG | + | chr7_1:12455874-12455893 | None:intergenic | 35.0% | |
| GGTTGAAGAAAAAAGCAAAG+AGG | + | chr7_1:12455877-12455896 | None:intergenic | 35.0% | |
| TTTGTAGAGAAAGGGAACAA+AGG | + | chr7_1:12455898-12455917 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAGGCTATGAAAAG+AGG | - | chr7_1:12455974-12455993 | Msa1009970:three_prime_UTR | 35.0% |
| ! | AATCTCGTCAATTTGGTCTT+TGG | + | chr7_1:12456067-12456086 | None:intergenic | 35.0% |
| GTTTCAGAATCTCGTCAATT+TGG | + | chr7_1:12456074-12456093 | None:intergenic | 35.0% | |
| AACTTATCATCAAAACCTGC+GGG | - | chr7_1:12456184-12456203 | Msa1009970:three_prime_UTR | 35.0% | |
| ! | GGTTTGATGACTAAGAATTC+TGG | - | chr7_1:12456564-12456583 | Msa1009970:three_prime_UTR | 35.0% |
| !! | TGACTAAGAATTCTGGAATC+AGG | - | chr7_1:12456571-12456590 | Msa1009970:three_prime_UTR | 35.0% |
| ! | AAGTCGCATATGTCAGATTT+TGG | + | chr7_1:12456606-12456625 | None:intergenic | 35.0% |
| ACTTGACAAATTTCCTTTGG+AGG | - | chr7_1:12456845-12456864 | Msa1009970:CDS | 35.0% | |
| TTGTATCCTTTAACCTCCAA+AGG | + | chr7_1:12456861-12456880 | None:intergenic | 35.0% | |
| ! | GAAAGAATCAATGAAGTGCT+TGG | - | chr7_1:12456888-12456907 | Msa1009970:CDS | 35.0% |
| CATCATTTCGAACAAAGGTA+CGG | + | chr7_1:12456935-12456954 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTCCGCTCTTATTG+GGG | + | chr7_1:12457401-12457420 | None:intergenic | 35.0% |
| TGTGGCTAGAAATGAAATGT+TGG | - | chr7_1:12457605-12457624 | Msa1009970:intron | 35.0% | |
| GAAACACACTTGTTCCTTAT+TGG | - | chr7_1:12457652-12457671 | Msa1009970:intron | 35.0% | |
| ! | ACTTGTTCCTTATTGGCTAT+AGG | - | chr7_1:12457659-12457678 | Msa1009970:intron | 35.0% |
| ! | TTCCTTATTGGCTATAGGAA+TGG | - | chr7_1:12457664-12457683 | Msa1009970:intron | 35.0% |
| TACCATTCCTATAGCCAATA+AGG | + | chr7_1:12457669-12457688 | None:intergenic | 35.0% | |
| AAAGTTACGTTGTGAACTTG+TGG | - | chr7_1:12457698-12457717 | Msa1009970:intron | 35.0% | |
| TCTAATCTAAAGGAATCACG+TGG | + | chr7_1:12457777-12457796 | None:intergenic | 35.0% | |
| TTCTAATACGTCAATGCACT+TGG | - | chr7_1:12457815-12457834 | Msa1009970:intron | 35.0% | |
| TCTAATACGTCAATGCACTT+GGG | - | chr7_1:12457816-12457835 | Msa1009970:intron | 35.0% | |
| AACATGCAAAGTACATTGCT+AGG | - | chr7_1:12457868-12457887 | Msa1009970:intron | 35.0% | |
| AACACATTCCAAGCCAAAAT+AGG | + | chr7_1:12457929-12457948 | None:intergenic | 35.0% | |
| GAGAATTAGGTTTCGGAGAT+TGG | + | chr7_1:12454424-12454443 | None:intergenic | 40.0% | |
| TGAGGACTGAAAGAGAGAAA+CGG | + | chr7_1:12454470-12454489 | None:intergenic | 40.0% | |
| GCTATGCAACCAAATCTATG+TGG | + | chr7_1:12455107-12455126 | None:intergenic | 40.0% | |
| GAACTAATGGAGTCTAAAGG+TGG | - | chr7_1:12455506-12455525 | Msa1009970:three_prime_UTR | 40.0% | |
| !! | TTTTTGTACGAAGCACCTCT+CGG | - | chr7_1:12455560-12455579 | Msa1009970:three_prime_UTR | 40.0% |
| TCTTCAATGATGTAACCGAG+AGG | + | chr7_1:12455578-12455597 | None:intergenic | 40.0% | |
| ATTGAAGACGTTCGACCTAA+CGG | - | chr7_1:12455590-12455609 | Msa1009970:three_prime_UTR | 40.0% | |
| AAACCATCCTGAGATTTCCT+GGG | - | chr7_1:12455776-12455795 | Msa1009970:three_prime_UTR | 40.0% | |
| TCATGGTCATCTTGACTCAA+AGG | + | chr7_1:12455939-12455958 | None:intergenic | 40.0% | |
| ACCATGACAAACTCAGCTAT+CGG | - | chr7_1:12455952-12455971 | Msa1009970:three_prime_UTR | 40.0% | |
| !!! | AACTCAGCTATCGGTTTTGA+AGG | - | chr7_1:12455961-12455980 | Msa1009970:three_prime_UTR | 40.0% |
| ! | TTTGGTCTTTGGACAATGCT+CGG | + | chr7_1:12456056-12456075 | None:intergenic | 40.0% |
| !! | TGAATAAGCTTGACTCGGAT+AGG | + | chr7_1:12456152-12456171 | None:intergenic | 40.0% |
| CACAGCAATGTTTAGACCAT+CGG | + | chr7_1:12456253-12456272 | None:intergenic | 40.0% | |
| ! | GCTGTTCTTGACAGCTATTT+TGG | - | chr7_1:12456354-12456373 | Msa1009970:three_prime_UTR | 40.0% |
| !!! | TGACAGCTATTTTGGCAAAC+TGG | - | chr7_1:12456362-12456381 | Msa1009970:three_prime_UTR | 40.0% |
| !!! | GACAGCTATTTTGGCAAACT+GGG | - | chr7_1:12456363-12456382 | Msa1009970:three_prime_UTR | 40.0% |
| !!! | TATTTTGGCAAACTGGGTTC+CGG | - | chr7_1:12456369-12456388 | Msa1009970:three_prime_UTR | 40.0% |
| AACCAGTCATGCACATTTCA+AGG | + | chr7_1:12456494-12456513 | None:intergenic | 40.0% | |
| ! | CGCATATGTCAGATTTTGGA+AGG | + | chr7_1:12456602-12456621 | None:intergenic | 40.0% |
| GACTTCGAATTTGAACCTTG+CGG | - | chr7_1:12456621-12456640 | Msa1009970:three_prime_UTR | 40.0% | |
| ACTTCGAATTTGAACCTTGC+GGG | - | chr7_1:12456622-12456641 | Msa1009970:three_prime_UTR | 40.0% | |
| TACTCGATGAACGGAATTGA+AGG | - | chr7_1:12456645-12456664 | Msa1009970:CDS | 40.0% | |
| ATAGCTGAATCCATCTTCAG+GGG | + | chr7_1:12456697-12456716 | None:intergenic | 40.0% | |
| CATAGCTGAATCCATCTTCA+GGG | + | chr7_1:12456698-12456717 | None:intergenic | 40.0% | |
| !! | TATGCAAGCTTTGAAGCAGT+GGG | - | chr7_1:12456714-12456733 | Msa1009970:intron | 40.0% |
| !! | TCTGAACGAACTTGTTGCAA+GGG | - | chr7_1:12456758-12456777 | Msa1009970:intron | 40.0% |
| AATGCAACAGAAAACTCAGC+TGG | + | chr7_1:12456801-12456820 | None:intergenic | 40.0% | |
| GAGGTTAAAGGATACAACTG+TGG | - | chr7_1:12456864-12456883 | Msa1009970:CDS | 40.0% | |
| ! | AATGAAGTGCTTGGAGAAGA+CGG | - | chr7_1:12456897-12456916 | Msa1009970:CDS | 40.0% |
| CGTACCTTTGTTCGAAATGA+TGG | - | chr7_1:12456933-12456952 | Msa1009970:intron | 40.0% | |
| !! | GTTTTGTTCCCCAATAAGAG+CGG | - | chr7_1:12457390-12457409 | Msa1009970:intron | 40.0% |
| AGCTTTACATGCATCGTATG+TGG | - | chr7_1:12457452-12457471 | Msa1009970:intron | 40.0% | |
| CTATAGGAGTTGTGAACTTG+TGG | - | chr7_1:12457587-12457606 | Msa1009970:intron | 40.0% | |
| TTGGTTAATCGAATCTCCGT+AGG | - | chr7_1:12457624-12457643 | Msa1009970:intron | 40.0% | |
| TAAGGAACAAGTGTGTTTCC+TGG | + | chr7_1:12457651-12457670 | None:intergenic | 40.0% | |
| TTGGCTATAGGAATGGTATG+AGG | - | chr7_1:12457671-12457690 | Msa1009970:intron | 40.0% | |
| TGTGAACTTGTGGCTAGAAA+TGG | - | chr7_1:12457597-12457616 | Msa1009970:intron | 40.0% | |
| !!! | GTGGCTAGAAATGGTTTTGT+TGG | - | chr7_1:12457717-12457736 | Msa1009970:intron | 40.0% |
| TTGGTTAATCGAATCTCCGT+AGG | - | chr7_1:12457624-12457643 | Msa1009970:intron | 40.0% | |
| CTAATACGTCAATGCACTTG+GGG | - | chr7_1:12457817-12457836 | Msa1009970:intron | 40.0% | |
| AGGTGCTTCGTACAAAAAGG+AGG | + | chr7_1:12455558-12455577 | None:intergenic | 45.0% | |
| !! | GAGAGGTGCTTCGTACAAAA+AGG | + | chr7_1:12455561-12455580 | None:intergenic | 45.0% |
| CAAACCATCCTGAGATTTCC+TGG | - | chr7_1:12455775-12455794 | Msa1009970:three_prime_UTR | 45.0% | |
| ATCACAACCCAGGAAATCTC+AGG | + | chr7_1:12455786-12455805 | None:intergenic | 45.0% | |
| AGGACAAGAAAAAGGAGAGG+AGG | + | chr7_1:12455850-12455869 | None:intergenic | 45.0% | |
| GAAAAAAGCAAAGAGGAGGG+AGG | + | chr7_1:12455870-12455889 | None:intergenic | 45.0% | |
| ACCGATAGCTGAGTTTGTCA+TGG | + | chr7_1:12455956-12455975 | None:intergenic | 45.0% | |
| TCAACAATGGTGCATTCTGC+TGG | + | chr7_1:12456096-12456115 | None:intergenic | 45.0% | |
| CGGCAAGCTTAAGAATTGCA+GGG | + | chr7_1:12456233-12456252 | None:intergenic | 45.0% | |
| TCGGCAAGCTTAAGAATTGC+AGG | + | chr7_1:12456234-12456253 | None:intergenic | 45.0% | |
| GCAATTCTTAAGCTTGCCGA+TGG | - | chr7_1:12456234-12456253 | Msa1009970:three_prime_UTR | 45.0% | |
| AAATCGGTGAGATACACTCG+CGG | - | chr7_1:12456273-12456292 | Msa1009970:three_prime_UTR | 45.0% | |
| GTCAAGAACAGCAACTTCCT+CGG | + | chr7_1:12456346-12456365 | None:intergenic | 45.0% | |
| CATCATGTAAGCTTGGCTAC+CGG | + | chr7_1:12456391-12456410 | None:intergenic | 45.0% | |
| GGTAGCCAAGCTTACATGAT+GGG | - | chr7_1:12456390-12456409 | Msa1009970:three_prime_UTR | 45.0% | |
| CATCACCCATCATGTAAGCT+TGG | + | chr7_1:12456398-12456417 | None:intergenic | 45.0% | |
| AAGACAGATGCATCTTCAGC+AGG | - | chr7_1:12456543-12456562 | Msa1009970:three_prime_UTR | 45.0% | |
| GCATAGCTGAATCCATCTTC+AGG | + | chr7_1:12456699-12456718 | None:intergenic | 45.0% | |
| !! | CTATGCAAGCTTTGAAGCAG+TGG | - | chr7_1:12456713-12456732 | Msa1009970:intron | 45.0% |
| !! | CTCTGAACGAACTTGTTGCA+AGG | - | chr7_1:12456757-12456776 | Msa1009970:intron | 45.0% |
| GCATTGCACATTGATGCGAA+TGG | - | chr7_1:12456816-12456835 | Msa1009970:CDS | 45.0% | |
| GCAGCCATCATTTCGAACAA+AGG | + | chr7_1:12456940-12456959 | None:intergenic | 45.0% | |
| CAACATTTCAGGGTAGACCT+TGG | + | chr7_1:12456969-12456988 | None:intergenic | 45.0% | |
| CTCACTCCAGCAACATTTCA+GGG | + | chr7_1:12456979-12456998 | None:intergenic | 45.0% | |
| TGAGAACGAGGAGGAAGTTA+AGG | - | chr7_1:12457001-12457020 | Msa1009970:intron | 45.0% | |
| AAGTGTGTTTCCTGGTCCTA+CGG | + | chr7_1:12457643-12457662 | None:intergenic | 45.0% | |
| GTTTGTGTTTCCTGGTCCTA+CGG | + | chr7_1:12457755-12457774 | None:intergenic | 45.0% | |
| ! | ATCACGTGGTTTGTGTTTCC+TGG | + | chr7_1:12457763-12457782 | None:intergenic | 45.0% |
| ! | GACAGCATTGAGAACACATG+TGG | - | chr7_1:12457899-12457918 | Msa1009970:intron | 45.0% |
| ! | CACATGTGGCTCTCCTATTT+TGG | - | chr7_1:12457913-12457932 | Msa1009970:intron | 45.0% |
| CAACCCAGGAAATCTCAGGA+TGG | + | chr7_1:12455782-12455801 | None:intergenic | 50.0% | |
| GGGAGGACAAGAAAAAGGAG+AGG | + | chr7_1:12455853-12455872 | None:intergenic | 50.0% | |
| GAGGAGGGAGGACAAGAAAA+AGG | + | chr7_1:12455858-12455877 | None:intergenic | 50.0% | |
| TTCTCTGACCCTGCTGGATT+AGG | - | chr7_1:12456027-12456046 | Msa1009970:three_prime_UTR | 50.0% | |
| AAGCAATTTCGTAGTCCCGC+AGG | + | chr7_1:12456202-12456221 | None:intergenic | 50.0% | |
| GGAAAAGCTTCGATGAGGGA+AGG | + | chr7_1:12456325-12456344 | None:intergenic | 50.0% | |
| CCTCGGAAAAGCTTCGATGA+GGG | + | chr7_1:12456329-12456348 | None:intergenic | 50.0% | |
| TCCTCGGAAAAGCTTCGATG+AGG | + | chr7_1:12456330-12456349 | None:intergenic | 50.0% | |
| CGGTAGCCAAGCTTACATGA+TGG | - | chr7_1:12456389-12456408 | Msa1009970:three_prime_UTR | 50.0% | |
| TGCTAAGCTAGACGCTTCAC+CGG | - | chr7_1:12456455-12456474 | Msa1009970:three_prime_UTR | 50.0% | |
| TCAAGGCCATAGACAGCTTC+CGG | + | chr7_1:12456477-12456496 | None:intergenic | 50.0% | |
| GGCCTTGAAATGTGCATGAC+TGG | - | chr7_1:12456489-12456508 | Msa1009970:three_prime_UTR | 50.0% | |
| TTCAGGGGTGACATGGATAG+TGG | + | chr7_1:12456682-12456701 | None:intergenic | 50.0% | |
| ATCCATGTCACCCCTGAAGA+TGG | - | chr7_1:12456684-12456703 | Msa1009970:intron | 50.0% | |
| ATCCATCTTCAGGGGTGACA+TGG | + | chr7_1:12456689-12456708 | None:intergenic | 50.0% | |
| ATGATGGCTGCTCATCTCCA+AGG | - | chr7_1:12456949-12456968 | Msa1009970:intron | 50.0% | |
| GGTCTACCCTGAAATGTTGC+TGG | - | chr7_1:12456970-12456989 | Msa1009970:intron | 50.0% | |
| CCTCACTCCAGCAACATTTC+AGG | + | chr7_1:12456980-12456999 | None:intergenic | 50.0% | |
| CCTGAAATGTTGCTGGAGTG+AGG | - | chr7_1:12456977-12456996 | Msa1009970:intron | 50.0% | |
| AATCGAATCTCCGTAGGACC+AGG | - | chr7_1:12457630-12457649 | Msa1009970:intron | 50.0% | |
| AATCGAATCTCCGTAGGACC+AGG | - | chr7_1:12457630-12457649 | Msa1009970:intron | 50.0% | |
| !! | ATGCACTTGGGGCATTTTCG+TGG | - | chr7_1:12457828-12457847 | Msa1009970:intron | 50.0% |
| !!! | GTGGCTCTCCTATTTTGGCT+TGG | - | chr7_1:12457918-12457937 | Msa1009970:intron | 50.0% |
| GAAGACGTTCGACCTAACGG+TGG | - | chr7_1:12455593-12455612 | Msa1009970:three_prime_UTR | 55.0% | |
| ! | GGTGTTTTCTCTGACCCTGC+TGG | - | chr7_1:12456021-12456040 | Msa1009970:three_prime_UTR | 55.0% |
| GGTCTTTGGACAATGCTCGG+AGG | + | chr7_1:12456053-12456072 | None:intergenic | 55.0% | |
| CGCGGAAGCTTCATCTTTCC+TGG | - | chr7_1:12456291-12456310 | Msa1009970:three_prime_UTR | 55.0% | |
| TGAGGGAAGGATTGAGCTCC+AGG | + | chr7_1:12456312-12456331 | None:intergenic | 55.0% | |
| ! | CCCTCATCGAAGCTTTTCCG+AGG | - | chr7_1:12456326-12456345 | Msa1009970:three_prime_UTR | 55.0% |
| GCTTCACCGGAAGCTGTCTA+TGG | - | chr7_1:12456468-12456487 | Msa1009970:three_prime_UTR | 55.0% | |
| CCTTGCGGGTACTCGATGAA+CGG | - | chr7_1:12456636-12456655 | Msa1009970:exon | 55.0% | |
| CTGGAGTGAGGATGAGAACG+AGG | - | chr7_1:12456989-12457008 | Msa1009970:intron | 55.0% | |
| GAGTGAGGATGAGAACGAGG+AGG | - | chr7_1:12456992-12457011 | Msa1009970:intron | 55.0% | |
| CTCGGAGGCCTAATCCAGCA+GGG | + | chr7_1:12456038-12456057 | None:intergenic | 60.0% | |
| CCGTTCATCGAGTACCCGCA+AGG | + | chr7_1:12456639-12456658 | None:intergenic | 60.0% | |
| GCTCGGAGGCCTAATCCAGC+AGG | + | chr7_1:12456039-12456058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 12454407 | 12458024 | 12454407 | ID=Msa1009970;Name=Msa1009970 |
| chr7_1 | mRNA | 12454407 | 12458024 | 12454407 | ID=Msa1009970-mRNA-1;Parent=Msa1009970;Name=Msa1009970-mRNA-1;_AED=0.03;_eAED=0.03;_QI=189|1|1|1|0.25|0|5|1918|52 |
| chr7_1 | exon | 12454407 | 12454852 | 12454407 | ID=Msa1009970-mRNA-1:exon:3226;Parent=Msa1009970-mRNA-1 |
| chr7_1 | exon | 12455172 | 12456664 | 12455172 | ID=Msa1009970-mRNA-1:exon:3225;Parent=Msa1009970-mRNA-1 |
| chr7_1 | exon | 12456782 | 12456937 | 12456782 | ID=Msa1009970-mRNA-1:exon:3224;Parent=Msa1009970-mRNA-1 |
| chr7_1 | exon | 12457755 | 12457827 | 12457755 | ID=Msa1009970-mRNA-1:exon:3223;Parent=Msa1009970-mRNA-1 |
| chr7_1 | exon | 12457927 | 12458024 | 12457927 | ID=Msa1009970-mRNA-1:exon:3222;Parent=Msa1009970-mRNA-1 |
| chr7_1 | five_prime_UTR | 12457927 | 12458024 | 12457927 | ID=Msa1009970-mRNA-1:five_prime_utr;Parent=Msa1009970-mRNA-1 |
| chr7_1 | five_prime_UTR | 12457755 | 12457827 | 12457755 | ID=Msa1009970-mRNA-1:five_prime_utr;Parent=Msa1009970-mRNA-1 |
| chr7_1 | five_prime_UTR | 12456920 | 12456937 | 12456920 | ID=Msa1009970-mRNA-1:five_prime_utr;Parent=Msa1009970-mRNA-1 |
| chr7_1 | CDS | 12456782 | 12456919 | 12456782 | ID=Msa1009970-mRNA-1:cds;Parent=Msa1009970-mRNA-1 |
| chr7_1 | CDS | 12456644 | 12456664 | 12456644 | ID=Msa1009970-mRNA-1:cds;Parent=Msa1009970-mRNA-1 |
| chr7_1 | three_prime_UTR | 12455172 | 12456643 | 12455172 | ID=Msa1009970-mRNA-1:three_prime_utr;Parent=Msa1009970-mRNA-1 |
| chr7_1 | three_prime_UTR | 12454407 | 12454852 | 12454407 | ID=Msa1009970-mRNA-1:three_prime_utr;Parent=Msa1009970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
