AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1010590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010590 MtrunA17_Chr7g0221791 90.204 245 23 1 1 244 95 339 4.00e-169 469
Msa1010590 MtrunA17_Chr7g0222171 93.416 243 14 2 1 242 96 337 1.05e-168 468
Msa1010590 MtrunA17_Chr7g0222121 79.211 279 23 2 1 244 95 373 6.70e-161 450
Msa1010590 MtrunA17_Chr1g0204651 64.050 242 81 4 1 237 99 339 5.32e-109 317
Msa1010590 MtrunA17_Chr7g0274061 61.570 242 87 4 1 237 108 348 1.74e-106 311
Msa1010590 MtrunA17_Chr7g0274071 60.581 241 89 4 1 237 106 344 4.36e-106 310
Msa1010590 MtrunA17_Chr7g0274041 58.921 241 92 5 5 239 104 343 7.34e-95 281
Msa1010590 MtrunA17_Chr7g0274081 57.653 196 75 4 49 237 2 196 1.08e-80 240
Msa1010590 MtrunA17_Chr7g0221771 85.586 111 16 0 134 244 3 113 6.11e-67 202
Msa1010590 MtrunA17_Chr7g0222141 89.157 83 9 0 54 136 65 147 7.84e-50 160
Msa1010590 MtrunA17_Chr7g0222151 89.189 74 8 0 134 207 3 76 9.15e-46 147
Msa1010590 MtrunA17_Chr3g0095421 34.247 219 127 6 10 219 146 356 4.02e-25 101
Msa1010590 MtrunA17_Chr1g0169691 29.825 228 134 8 9 217 99 319 6.22e-17 78.6
Msa1010590 MtrunA17_Chr1g0167421 28.926 242 138 8 6 214 167 407 4.16e-16 77.0
Msa1010590 MtrunA17_Chr7g0221781 82.353 34 6 0 3 36 97 130 5.99e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010590 AT1G60690.1 77.366 243 52 2 5 244 103 345 1.73e-142 403
Msa1010590 AT1G60710.1 78.512 242 49 2 5 243 103 344 2.99e-142 402
Msa1010590 AT1G60730.1 78.926 242 48 2 5 243 103 344 2.15e-141 400
Msa1010590 AT1G60680.1 77.273 242 52 2 5 243 104 345 3.19e-139 394
Msa1010590 AT1G60730.3 72.901 262 48 3 5 243 103 364 2.92e-136 388
Msa1010590 AT1G10810.1 74.380 242 59 2 5 243 103 344 6.17e-136 386
Msa1010590 AT1G10810.3 74.380 242 59 2 5 243 51 292 1.33e-135 383
Msa1010590 AT1G60750.1 74.274 241 44 2 5 243 105 329 6.18e-130 370
Msa1010590 AT1G60680.2 84.733 131 20 0 5 135 104 234 9.90e-79 237
Msa1010590 AT1G10810.2 82.443 131 23 0 5 135 103 233 8.81e-78 235
Msa1010590 AT1G06690.1 31.963 219 132 6 10 219 157 367 2.00e-22 94.7
Msa1010590 AT1G04690.1 31.429 210 120 6 9 201 99 301 8.98e-20 87.0
Msa1010590 AT5G53580.1 30.556 216 127 8 13 215 145 350 6.02e-19 85.1
Msa1010590 AT1G60730.2 79.070 43 9 0 5 47 103 145 3.15e-18 80.1

Find 102 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATTTGTTACATGTTTA+AGG 0.082771 7_1:-13808717 Msa1010590:three_prime_UTR
TCCAATTGCACAGCTGTTAT+TGG 0.154954 7_1:+13810175 None:intergenic
TTGATTAAAGTTCTCCATTT+TGG 0.183974 7_1:+13809175 None:intergenic
TGGCCTCTTTACATAGTATT+AGG 0.237821 7_1:-13811335 Msa1010590:five_prime_UTR
AAGAAATAATTCCAACTTGC+AGG 0.276199 7_1:-13810123 Msa1010590:intron
ATACTCCACCACTCTCTTCT+TGG 0.280266 7_1:-13809034 Msa1010590:CDS
CTTGATACCTCTGACATCTA+TGG 0.288925 7_1:-13811110 Msa1010590:five_prime_UTR
CTGTAAACCGGCACTGTCTA+TGG 0.295876 7_1:-13808862 Msa1010590:three_prime_UTR
GCTTTATGAATTGAATTAGA+TGG 0.319926 7_1:-13808899 Msa1010590:three_prime_UTR
TTACATAGTATTAGGATAGA+AGG 0.321998 7_1:-13811327 Msa1010590:five_prime_UTR
AATCAAACCGTGATTTCAAT+TGG 0.361716 7_1:+13810694 None:intergenic
GATACCTGGAACCACCAAAA+TGG 0.362093 7_1:-13809189 Msa1010590:CDS
CATACTGATTTATTTGTTGA+AGG 0.363033 7_1:+13808959 None:intergenic
TCCAATAACAGCTGTGCAAT+TGG 0.363190 7_1:-13810176 Msa1010590:CDS
ATGATTTCATCTATTACCTT+TGG 0.364081 7_1:-13808650 Msa1010590:three_prime_UTR
TTTCTTAGGGAACTTGGTAT+TGG 0.374176 7_1:-13809845 Msa1010590:intron
ATAATTTGTTACATGTTTAA+GGG 0.377104 7_1:-13808716 Msa1010590:three_prime_UTR
GCTGTCAAGGGTGGTAGATA+TGG 0.391549 7_1:-13809086 Msa1010590:CDS
TTAAGATGAAGTTGAATACT+AGG 0.401407 7_1:+13808625 None:intergenic
TACAACCAAATTCATTCAAA+AGG 0.408600 7_1:+13808931 None:intergenic
ATTTGAGAGGGTTAATGAAC+TGG 0.426318 7_1:-13809285 Msa1010590:CDS
CTGTCAAGGGTGGTAGATAT+GGG 0.429429 7_1:-13809085 Msa1010590:CDS
TAAACTAACACAAGAAGAAA+TGG 0.436815 7_1:-13809132 Msa1010590:CDS
AGAGCAATCATGTCAGGTTC+AGG 0.437605 7_1:+13811167 None:intergenic
CTTGGTTGCATGAGCATGTC+AGG 0.442441 7_1:-13811209 Msa1010590:five_prime_UTR
GCAGTAGGAAGAATGAAGTT+AGG 0.442452 7_1:-13811263 Msa1010590:five_prime_UTR
AAAAGTGACACCAGATTGTA+TGG 0.442868 7_1:+13811133 None:intergenic
ATATAGTCTGATTCTGCTGC+AGG 0.450000 7_1:+13809306 None:intergenic
CAAGCTTCTCTCACGTAAGC+TGG 0.451335 7_1:+13810790 None:intergenic
GTGCCGGTTTACAGTTCAAC+CGG 0.458220 7_1:+13808871 None:intergenic
CACACCAACGAACTCCTCCT+TGG 0.466667 7_1:-13811083 Msa1010590:five_prime_UTR
ATTGTTGCATATAGTCCTCT+TGG 0.471189 7_1:-13809821 Msa1010590:CDS
TAATGAACTGGCTACAAAGA+AGG 0.479658 7_1:-13809273 Msa1010590:CDS
TCGGGCACACGTCGTTTCCT+TGG 0.481328 7_1:+13809210 None:intergenic
ATTCACCATGCCATACAATC+TGG 0.483546 7_1:-13811143 Msa1010590:five_prime_UTR
ATTGAATTAGATGGTTCAAC+CGG 0.489942 7_1:-13808890 Msa1010590:three_prime_UTR
CAACCGGTTGAACTGTAAAC+CGG 0.492517 7_1:-13808874 Msa1010590:three_prime_UTR
TAAGATGAAGTTGAATACTA+GGG 0.497019 7_1:+13808626 None:intergenic
CGTCTCAGCTTGCATTGGCA+TGG 0.497948 7_1:-13809241 Msa1010590:CDS
ATGAGCATGTCAGGTGTCTA+TGG 0.498898 7_1:-13811200 Msa1010590:five_prime_UTR
TGCAATTGGAGTGGTCACTA+TGG 0.500317 7_1:-13810162 Msa1010590:CDS
TAAAATAAACCTGGTGGTGG+CGG 0.503668 7_1:-13811383 Msa1010590:five_prime_UTR
ATCATGTCAGGTTCAGGCTT+AGG 0.505151 7_1:+13811173 None:intergenic
GAAGTGTCCTTGCAAGGACT+TGG 0.508887 7_1:-13811227 Msa1010590:five_prime_UTR
GTCTTTAGCAGATGCTGTCA+AGG 0.511022 7_1:-13809099 Msa1010590:CDS
TAATTCAATTCATAAAGCAT+TGG 0.511253 7_1:+13808904 None:intergenic
AACGACGTGTGCCCGATACC+TGG 0.512377 7_1:-13809203 Msa1010590:CDS
TAAACATGTAACAAATTATG+TGG 0.521872 7_1:+13808720 None:intergenic
CAGTTCAATATTTAAAACAT+TGG 0.523144 7_1:-13808810 Msa1010590:three_prime_UTR
TCGTCTTCCAATTGAAATCA+CGG 0.530494 7_1:-13810701 Msa1010590:intron
TATCCTAATACTATGTAAAG+AGG 0.532329 7_1:+13811332 None:intergenic
GAAGTTAGGATCACAAGGAA+TGG 0.532873 7_1:-13811249 Msa1010590:five_prime_UTR
TCTTCTGATTGTTGAAGCTG+AGG 0.532875 7_1:+13810213 None:intergenic
AAGTCACTTAGCTCGACGTT+AGG 0.533335 7_1:+13810946 None:intergenic
ACTAAATCAAACCTGCAAGT+TGG 0.537019 7_1:+13810112 None:intergenic
AGAAGAACAATGACAGCAGT+AGG 0.537429 7_1:-13811278 Msa1010590:five_prime_UTR
TACTCCGTCTCAGCTTGCAT+TGG 0.539631 7_1:-13809246 Msa1010590:CDS
TGAATATCTCCGCCACCACC+AGG 0.540225 7_1:+13811374 None:intergenic
GGAGGAGTTCGTTGGTGTGA+GGG 0.544146 7_1:+13811087 None:intergenic
GAGAACTTTAATCAAAACAT+TGG 0.545978 7_1:-13809167 Msa1010590:CDS
AATGAACTGGCTACAAAGAA+GGG 0.546567 7_1:-13809272 Msa1010590:CDS
ACTGTCTATGGTTCATTGAA+CGG 0.548613 7_1:-13808850 Msa1010590:three_prime_UTR
TTATAAAATAAACCTGGTGG+TGG 0.553633 7_1:-13811386 Msa1010590:five_prime_UTR
CATGCCAATGCAAGCTGAGA+CGG 0.554180 7_1:+13809242 None:intergenic
ATGTCAGGTTCAGGCTTAGG+AGG 0.557823 7_1:+13811176 None:intergenic
TGAATGAGAGCAATCATGTC+AGG 0.558885 7_1:+13811161 None:intergenic
CTTTCCAAGGAGGAGTTCGT+TGG 0.559199 7_1:+13811079 None:intergenic
AACAAAGGATGACTACCGCC+AGG 0.563602 7_1:-13809756 Msa1010590:intron
AGGAGGAGTTCGTTGGTGTG+AGG 0.567455 7_1:+13811086 None:intergenic
GATGTCGGTACAACAAAGAA+AGG 0.567941 7_1:+13811415 None:intergenic
ATAGTTTCAAGTATTTGATG+TGG 0.572074 7_1:-13808775 Msa1010590:three_prime_UTR
CTTAAGAAACTAGTTGAAGA+GGG 0.573672 7_1:-13810265 Msa1010590:CDS
GCATATAGTCCTCTTGGACG+AGG 0.577164 7_1:-13809815 Msa1010590:CDS
CAATGAACCATAGACAGTGC+CGG 0.581244 7_1:+13808855 None:intergenic
GCTTAAGAAACTAGTTGAAG+AGG 0.581858 7_1:-13810266 Msa1010590:CDS
AGAATCAGACTATATTTGAG+AGG 0.585843 7_1:-13809298 Msa1010590:CDS
AGAAAGTAAGAACCTTTCCA+AGG 0.586920 7_1:+13811066 None:intergenic
CATGCAACCAAGTCCTTGCA+AGG 0.590784 7_1:+13811220 None:intergenic
GGAATGGAAGTGTCCTTGCA+AGG 0.592055 7_1:-13811233 Msa1010590:five_prime_UTR
AGCTAATTATAAAATAAACC+TGG 0.596040 7_1:-13811392 Msa1010590:five_prime_UTR
TTCATTGAACGGTTCGACTG+TGG 0.598708 7_1:-13808839 Msa1010590:three_prime_UTR
GAATCAGACTATATTTGAGA+GGG 0.604511 7_1:-13809297 Msa1010590:CDS
GAAAAGAATCCTCGTCCAAG+AGG 0.611487 7_1:+13809806 None:intergenic
CAACGAACTCCTCCTTGGAA+AGG 0.612819 7_1:-13811078 Msa1010590:five_prime_UTR
ACTATGGTCAAGAGATGTTG+AGG 0.614034 7_1:-13810146 Msa1010590:CDS
ATGGGGATGAAATAAGTACA+TGG 0.614624 7_1:-13809067 Msa1010590:CDS
ACAATAGTTTATCAAACAGA+CGG 0.621817 7_1:+13808677 None:intergenic
TCTTTAGCAGATGCTGTCAA+GGG 0.626442 7_1:-13809098 Msa1010590:CDS
AGTTGAATACTAGGGGCCAA+AGG 0.626571 7_1:+13808634 None:intergenic
GATTGTTGAGAACTTAACAA+AGG 0.637901 7_1:-13809771 Msa1010590:CDS
AGAATGAAGTTAGGATCACA+AGG 0.639560 7_1:-13811254 Msa1010590:five_prime_UTR
TTAGCAGATGCTGTCAAGGG+TGG 0.645754 7_1:-13809095 Msa1010590:CDS
AAGATGAAGTTGAATACTAG+GGG 0.647838 7_1:+13808627 None:intergenic
GCTTTCCAAGAAGAGAGTGG+TGG 0.651055 7_1:+13809029 None:intergenic
TAACAGCTGTGCAATTGGAG+TGG 0.661184 7_1:-13810171 Msa1010590:CDS
AAGTAAGAACCTTTCCAAGG+AGG 0.662248 7_1:+13811069 None:intergenic
ACAGCTTTCCAAGAAGAGAG+TGG 0.666396 7_1:+13809026 None:intergenic
GTGAGGGCCATAGATGTCAG+AGG 0.676572 7_1:+13811103 None:intergenic
TTGGCATGGCTTCATCACCA+AGG 0.680145 7_1:-13809227 Msa1010590:CDS
TAATTATAAAATAAACCTGG+TGG 0.689415 7_1:-13811389 Msa1010590:five_prime_UTR
TGTCAAGGGTGGTAGATATG+GGG 0.702694 7_1:-13809084 Msa1010590:CDS
TGACACCAGATTGTATGGCA+TGG 0.709987 7_1:+13811138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGATTTTTTTTTTTTCTT+AGG - chr7_1:13810157-13810176 Msa1010590:CDS 10.0%
!!! ATGATTTTTTTTTTTTCTTA+GGG - chr7_1:13810158-13810177 Msa1010590:CDS 10.0%
!!! TAATTAAAATAGAACATTTT+GGG + chr7_1:13810573-13810592 None:intergenic 10.0%
!! TATAAAAATGTGTTTCAATA+TGG + chr7_1:13809430-13809449 None:intergenic 15.0%
!! TATTACCTAAAATTAATGTT+TGG - chr7_1:13809452-13809471 Msa1010590:intron 15.0%
!!! TTTATCCAAACATTAATTTT+AGG + chr7_1:13809460-13809479 None:intergenic 15.0%
!!! TGGATAAATTATTTTCAAAA+AGG - chr7_1:13809472-13809491 Msa1010590:intron 15.0%
!!! CTAATTAAAATAGAACATTT+TGG + chr7_1:13810574-13810593 None:intergenic 15.0%
!! AGATATTTAATAATTGATGT+AGG + chr7_1:13810598-13810617 None:intergenic 15.0%
!! ACAAATAGAAGATTATATTT+AGG + chr7_1:13810652-13810671 None:intergenic 15.0%
!!! ATAATTTGTTACATGTTTAA+GGG - chr7_1:13811300-13811319 Msa1010590:five_prime_UTR 15.0%
!!! ATTTTATAATTAGCTGATGT+CGG + chr7_1:13808619-13808638 None:intergenic 20.0%
!! AGCTAATTATAAAATAAACC+TGG - chr7_1:13808624-13808643 Msa1010590:three_prime_UTR 20.0%
!! TAATTATAAAATAAACCTGG+TGG - chr7_1:13808627-13808646 Msa1010590:three_prime_UTR 20.0%
!!! AAAATTCTTTGATTCCATTT+TGG - chr7_1:13809351-13809370 Msa1010590:intron 20.0%
!! TTAAAATTGCAATGATATGA+AGG - chr7_1:13809976-13809995 Msa1010590:intron 20.0%
!! ACGATTGTAATTTAAGAAAA+TGG - chr7_1:13810013-13810032 Msa1010590:intron 20.0%
!! AAAAAAAATCATAACTCATG+AGG + chr7_1:13810150-13810169 None:intergenic 20.0%
!! TAATTCAATTCATAAAGCAT+TGG + chr7_1:13811115-13811134 None:intergenic 20.0%
!!! CAATGTTTTAAATATTGAAC+TGG + chr7_1:13811208-13811227 None:intergenic 20.0%
!!! CAGTTCAATATTTAAAACAT+TGG - chr7_1:13811206-13811225 Msa1010590:five_prime_UTR 20.0%
!! TAAACATGTAACAAATTATG+TGG + chr7_1:13811299-13811318 None:intergenic 20.0%
!!! CATAATTTGTTACATGTTTA+AGG - chr7_1:13811299-13811318 Msa1010590:five_prime_UTR 20.0%
!! TTCACAACTTGAATTTTGTT+TGG - chr7_1:13808661-13808680 Msa1010590:three_prime_UTR 25.0%
! TATCCTAATACTATGTAAAG+AGG + chr7_1:13808687-13808706 None:intergenic 25.0%
! TTACATAGTATTAGGATAGA+AGG - chr7_1:13808689-13808708 Msa1010590:three_prime_UTR 25.0%
! AACTTTCTCTCTTAATCTAA+CGG + chr7_1:13809532-13809551 None:intergenic 25.0%
! GAGGGAAAAATAAAATACAT+TGG - chr7_1:13809769-13809788 Msa1010590:CDS 25.0%
!! ATGATATGAAGGTATAAAAC+AGG - chr7_1:13809987-13810006 Msa1010590:intron 25.0%
! TTGAATGTACTTACAAGTAT+TGG - chr7_1:13810042-13810061 Msa1010590:intron 25.0%
!!! TTTTTTTTTCTTAGGGAACT+TGG - chr7_1:13810165-13810184 Msa1010590:CDS 25.0%
! TATTAATGATGTCTATGTGA+CGG + chr7_1:13810406-13810425 None:intergenic 25.0%
! TGTTATATAGATTCTAACCT+TGG - chr7_1:13810544-13810563 Msa1010590:intron 25.0%
!! TTGATTAAAGTTCTCCATTT+TGG + chr7_1:13810844-13810863 None:intergenic 25.0%
! GAGAACTTTAATCAAAACAT+TGG - chr7_1:13810849-13810868 Msa1010590:intron 25.0%
! TAAACTAACACAAGAAGAAA+TGG - chr7_1:13810884-13810903 Msa1010590:intron 25.0%
!!! CATACTGATTTATTTGTTGA+AGG + chr7_1:13811060-13811079 None:intergenic 25.0%
!! AGTTTCCTTTTGAATGAATT+TGG - chr7_1:13811080-13811099 Msa1010590:five_prime_UTR 25.0%
! TACAACCAAATTCATTCAAA+AGG + chr7_1:13811088-13811107 None:intergenic 25.0%
! GCTTTATGAATTGAATTAGA+TGG - chr7_1:13811117-13811136 Msa1010590:five_prime_UTR 25.0%
!! ATAGTTTCAAGTATTTGATG+TGG - chr7_1:13811241-13811260 Msa1010590:five_prime_UTR 25.0%
! ACAATAGTTTATCAAACAGA+CGG + chr7_1:13811342-13811361 None:intergenic 25.0%
! ATGATTTCATCTATTACCTT+TGG - chr7_1:13811366-13811385 Msa1010590:five_prime_UTR 25.0%
! TAAGATGAAGTTGAATACTA+GGG + chr7_1:13811393-13811412 None:intergenic 25.0%
! TTAAGATGAAGTTGAATACT+AGG + chr7_1:13811394-13811413 None:intergenic 25.0%
TTATAAAATAAACCTGGTGG+TGG - chr7_1:13808630-13808649 Msa1010590:three_prime_UTR 30.0%
AATGAGTATGTGTGAAATTG+TGG - chr7_1:13809109-13809128 Msa1010590:CDS 30.0%
! TTTGGAGCGAAATATATTGA+AGG - chr7_1:13809181-13809200 Msa1010590:CDS 30.0%
TTGGAGCGAAATATATTGAA+GGG - chr7_1:13809182-13809201 Msa1010590:CDS 30.0%
AATCAAACCGTGATTTCAAT+TGG + chr7_1:13809325-13809344 None:intergenic 30.0%
CTCAATTTAAGCTACCAAAA+TGG + chr7_1:13809368-13809387 None:intergenic 30.0%
! TCCCTTTTACTATGTAAGAT+TGG - chr7_1:13809724-13809743 Msa1010590:intron 30.0%
CCCAATCTTACATAGTAAAA+GGG + chr7_1:13809728-13809747 None:intergenic 30.0%
! CCCTTTTACTATGTAAGATT+GGG - chr7_1:13809725-13809744 Msa1010590:intron 30.0%
! CCTTTTACTATGTAAGATTG+GGG - chr7_1:13809726-13809745 Msa1010590:intron 30.0%
CTTAAGAAACTAGTTGAAGA+GGG - chr7_1:13809751-13809770 Msa1010590:intron 30.0%
AAGAAATAATTCCAACTTGC+AGG - chr7_1:13809893-13809912 Msa1010590:intron 30.0%
GATTGTTGAGAACTTAACAA+AGG - chr7_1:13810245-13810264 Msa1010590:CDS 30.0%
AACTGACAAGTATGAAATAC+TGG - chr7_1:13810348-13810367 Msa1010590:intron 30.0%
AGAATCAGACTATATTTGAG+AGG - chr7_1:13810718-13810737 Msa1010590:CDS 30.0%
GAATCAGACTATATTTGAGA+GGG - chr7_1:13810719-13810738 Msa1010590:CDS 30.0%
! ATTAAAGTTCTCCATTTTGG+TGG + chr7_1:13810841-13810860 None:intergenic 30.0%
ATTGAATTAGATGGTTCAAC+CGG - chr7_1:13811126-13811145 Msa1010590:five_prime_UTR 30.0%
AAGATGAAGTTGAATACTAG+GGG + chr7_1:13811392-13811411 None:intergenic 30.0%
TGGCCTCTTTACATAGTATT+AGG - chr7_1:13808681-13808700 Msa1010590:three_prime_UTR 35.0%
AGAATGAAGTTAGGATCACA+AGG - chr7_1:13808762-13808781 Msa1010590:three_prime_UTR 35.0%
AAAAGTGACACCAGATTGTA+TGG + chr7_1:13808886-13808905 None:intergenic 35.0%
AGAAAGTAAGAACCTTTCCA+AGG + chr7_1:13808953-13808972 None:intergenic 35.0%
GTTGAATTGGCTACAAAGTT+TGG - chr7_1:13809163-13809182 Msa1010590:CDS 35.0%
! GAAGGGAAATTTGAGATCTT+TGG - chr7_1:13809199-13809218 Msa1010590:CDS 35.0%
TCGTCTTCCAATTGAAATCA+CGG - chr7_1:13809315-13809334 Msa1010590:CDS 35.0%
CTGAAGCAAACATATGCTTA+TGG + chr7_1:13809393-13809412 None:intergenic 35.0%
CCCCAATCTTACATAGTAAA+AGG + chr7_1:13809729-13809748 None:intergenic 35.0%
GCTTAAGAAACTAGTTGAAG+AGG - chr7_1:13809750-13809769 Msa1010590:intron 35.0%
ACTAAATCAAACCTGCAAGT+TGG + chr7_1:13809907-13809926 None:intergenic 35.0%
TTATCTAGCATTTCTCTCTG+TGG - chr7_1:13809946-13809965 Msa1010590:intron 35.0%
AACGATTAAAGACGTGTGTT+TGG + chr7_1:13810102-13810121 None:intergenic 35.0%
AAACACACGTCTTTAATCGT+TGG - chr7_1:13810101-13810120 Msa1010590:intron 35.0%
TTTCTTAGGGAACTTGGTAT+TGG - chr7_1:13810171-13810190 Msa1010590:CDS 35.0%
ATTGTTGCATATAGTCCTCT+TGG - chr7_1:13810195-13810214 Msa1010590:CDS 35.0%
TTTCATACTTGTCAGTTGAG+TGG + chr7_1:13810345-13810364 None:intergenic 35.0%
ATGAAATACTGGCACAAACA+TGG - chr7_1:13810359-13810378 Msa1010590:intron 35.0%
TCACATGTTCAGTATTGTGT+TGG - chr7_1:13810466-13810485 Msa1010590:intron 35.0%
! ACACGAAACCTTCAAGTTTA+AGG + chr7_1:13810527-13810546 None:intergenic 35.0%
!!! AGGTTTTCAGGTTGAAATCT+AGG + chr7_1:13810693-13810712 None:intergenic 35.0%
ATTTGAGAGGGTTAATGAAC+TGG - chr7_1:13810731-13810750 Msa1010590:CDS 35.0%
TAATGAACTGGCTACAAAGA+AGG - chr7_1:13810743-13810762 Msa1010590:CDS 35.0%
AATGAACTGGCTACAAAGAA+GGG - chr7_1:13810744-13810763 Msa1010590:CDS 35.0%
ATGGGGATGAAATAAGTACA+TGG - chr7_1:13810949-13810968 Msa1010590:five_prime_UTR 35.0%
ACTGTCTATGGTTCATTGAA+CGG - chr7_1:13811166-13811185 Msa1010590:five_prime_UTR 35.0%
GATGTCGGTACAACAAAGAA+AGG + chr7_1:13808604-13808623 None:intergenic 40.0%
!! TAAAATAAACCTGGTGGTGG+CGG - chr7_1:13808633-13808652 Msa1010590:three_prime_UTR 40.0%
AGAAGAACAATGACAGCAGT+AGG - chr7_1:13808738-13808757 Msa1010590:three_prime_UTR 40.0%
GCAGTAGGAAGAATGAAGTT+AGG - chr7_1:13808753-13808772 Msa1010590:three_prime_UTR 40.0%
GAAGTTAGGATCACAAGGAA+TGG - chr7_1:13808767-13808786 Msa1010590:three_prime_UTR 40.0%
TGAATGAGAGCAATCATGTC+AGG + chr7_1:13808858-13808877 None:intergenic 40.0%
ATTCACCATGCCATACAATC+TGG - chr7_1:13808873-13808892 Msa1010590:three_prime_UTR 40.0%
CTTGATACCTCTGACATCTA+TGG - chr7_1:13808906-13808925 Msa1010590:three_prime_UTR 40.0%
AAGTAAGAACCTTTCCAAGG+AGG + chr7_1:13808950-13808969 None:intergenic 40.0%
GTATGTGTGAAATTGTGGAC+AGG - chr7_1:13809114-13809133 Msa1010590:CDS 40.0%
!! AATTGTGGACAGGCTTTAAG+AGG - chr7_1:13809124-13809143 Msa1010590:CDS 40.0%
AGTGAGAGAGAAGGTTGAAT+TGG - chr7_1:13809150-13809169 Msa1010590:CDS 40.0%
CTTTCTCAATCTACGATCAG+CGG - chr7_1:13809556-13809575 Msa1010590:intron 40.0%
TCTTCTGATTGTTGAAGCTG+AGG + chr7_1:13809806-13809825 None:intergenic 40.0%
TCCAATAACAGCTGTGCAAT+TGG - chr7_1:13809840-13809859 Msa1010590:CDS 40.0%
TCCAATTGCACAGCTGTTAT+TGG + chr7_1:13809844-13809863 None:intergenic 40.0%
ACTATGGTCAAGAGATGTTG+AGG - chr7_1:13809870-13809889 Msa1010590:intron 40.0%
CGAACACACCTTAAACTTGA+AGG - chr7_1:13810516-13810535 Msa1010590:intron 40.0%
!!! TAGAACATTTTGGGATGCCA+AGG + chr7_1:13810564-13810583 None:intergenic 40.0%
ATATAGTCTGATTCTGCTGC+AGG + chr7_1:13810713-13810732 None:intergenic 40.0%
!! ATTTTGGTGGTTCCAGGTAT+CGG + chr7_1:13810828-13810847 None:intergenic 40.0%
TCTTTAGCAGATGCTGTCAA+GGG - chr7_1:13810918-13810937 Msa1010590:exon 40.0%
ATGAGCATGTCAGGTGTCTA+TGG - chr7_1:13808816-13808835 Msa1010590:three_prime_UTR 45.0%
ATCATGTCAGGTTCAGGCTT+AGG + chr7_1:13808846-13808865 None:intergenic 45.0%
AGAGCAATCATGTCAGGTTC+AGG + chr7_1:13808852-13808871 None:intergenic 45.0%
TGACACCAGATTGTATGGCA+TGG + chr7_1:13808881-13808900 None:intergenic 45.0%
AAGTCACTTAGCTCGACGTT+AGG + chr7_1:13809073-13809092 None:intergenic 45.0%
TAACAGCTGTGCAATTGGAG+TGG - chr7_1:13809845-13809864 Msa1010590:intron 45.0%
TGCAATTGGAGTGGTCACTA+TGG - chr7_1:13809854-13809873 Msa1010590:intron 45.0%
!! GTTTGGTGTCAAACACGTGT+TGG + chr7_1:13810085-13810104 None:intergenic 45.0%
!! CTTTAATCGTTGGTGCTGCA+TGG - chr7_1:13810111-13810130 Msa1010590:intron 45.0%
GAAAAGAATCCTCGTCCAAG+AGG + chr7_1:13810213-13810232 None:intergenic 45.0%
! GGACGAGGATTCTTTTCATC+AGG - chr7_1:13810216-13810235 Msa1010590:CDS 45.0%
! ATGCTTTTCGACAAACCTGG+CGG + chr7_1:13810278-13810297 None:intergenic 45.0%
! AGCATGCTTTTCGACAAACC+TGG + chr7_1:13810281-13810300 None:intergenic 45.0%
! TGATTCTGCTGCAGGTTTTC+AGG + chr7_1:13810705-13810724 None:intergenic 45.0%
!! TTTTGGTGGTTCCAGGTATC+GGG + chr7_1:13810827-13810846 None:intergenic 45.0%
GATACCTGGAACCACCAAAA+TGG - chr7_1:13810827-13810846 Msa1010590:intron 45.0%
!! TTCTCCATTTTGGTGGTTCC+AGG + chr7_1:13810834-13810853 None:intergenic 45.0%
GTCTTTAGCAGATGCTGTCA+AGG - chr7_1:13810917-13810936 Msa1010590:exon 45.0%
CTGTCAAGGGTGGTAGATAT+GGG - chr7_1:13810931-13810950 Msa1010590:five_prime_UTR 45.0%
TGTCAAGGGTGGTAGATATG+GGG - chr7_1:13810932-13810951 Msa1010590:five_prime_UTR 45.0%
ATACTCCACCACTCTCTTCT+TGG - chr7_1:13810982-13811001 Msa1010590:five_prime_UTR 45.0%
ACAGCTTTCCAAGAAGAGAG+TGG + chr7_1:13810993-13811012 None:intergenic 45.0%
CAACCGGTTGAACTGTAAAC+CGG - chr7_1:13811142-13811161 Msa1010590:five_prime_UTR 45.0%
CAATGAACCATAGACAGTGC+CGG + chr7_1:13811164-13811183 None:intergenic 45.0%
TTCATTGAACGGTTCGACTG+TGG - chr7_1:13811177-13811196 Msa1010590:five_prime_UTR 45.0%
AGTTGAATACTAGGGGCCAA+AGG + chr7_1:13811385-13811404 None:intergenic 45.0%
!! GGAATGGAAGTGTCCTTGCA+AGG - chr7_1:13808783-13808802 Msa1010590:three_prime_UTR 50.0%
! GAAGTGTCCTTGCAAGGACT+TGG - chr7_1:13808789-13808808 Msa1010590:three_prime_UTR 50.0%
CATGCAACCAAGTCCTTGCA+AGG + chr7_1:13808799-13808818 None:intergenic 50.0%
CTTGGTTGCATGAGCATGTC+AGG - chr7_1:13808807-13808826 Msa1010590:three_prime_UTR 50.0%
ATGTCAGGTTCAGGCTTAGG+AGG + chr7_1:13808843-13808862 None:intergenic 50.0%
CTTTCCAAGGAGGAGTTCGT+TGG + chr7_1:13808940-13808959 None:intergenic 50.0%
CAACGAACTCCTCCTTGGAA+AGG - chr7_1:13808938-13808957 Msa1010590:three_prime_UTR 50.0%
!! TGTGGACAGGCTTTAAGAGG+AGG - chr7_1:13809127-13809146 Msa1010590:CDS 50.0%
AAGAGGAGGAGTGAGAGAGA+AGG - chr7_1:13809141-13809160 Msa1010590:CDS 50.0%
CAAGCTTCTCTCACGTAAGC+TGG + chr7_1:13809229-13809248 None:intergenic 50.0%
TCAATCTACGATCAGCGGCA+TGG - chr7_1:13809561-13809580 Msa1010590:intron 50.0%
GCATATAGTCCTCTTGGACG+AGG - chr7_1:13810201-13810220 Msa1010590:CDS 50.0%
AACAAAGGATGACTACCGCC+AGG - chr7_1:13810260-13810279 Msa1010590:CDS 50.0%
GACGGTGACACTATCATGTC+AGG + chr7_1:13810388-13810407 None:intergenic 50.0%
TACTCCGTCTCAGCTTGCAT+TGG - chr7_1:13810770-13810789 Msa1010590:CDS 50.0%
CATGCCAATGCAAGCTGAGA+CGG + chr7_1:13810777-13810796 None:intergenic 50.0%
TTGGCATGGCTTCATCACCA+AGG - chr7_1:13810789-13810808 Msa1010590:CDS 50.0%
TTAGCAGATGCTGTCAAGGG+TGG - chr7_1:13810921-13810940 Msa1010590:exon 50.0%
GCTGTCAAGGGTGGTAGATA+TGG - chr7_1:13810930-13810949 Msa1010590:five_prime_UTR 50.0%
GCTTTCCAAGAAGAGAGTGG+TGG + chr7_1:13810990-13811009 None:intergenic 50.0%
!! GTGCCGGTTTACAGTTCAAC+CGG + chr7_1:13811148-13811167 None:intergenic 50.0%
CTGTAAACCGGCACTGTCTA+TGG - chr7_1:13811154-13811173 Msa1010590:five_prime_UTR 50.0%
TGAATATCTCCGCCACCACC+AGG + chr7_1:13808645-13808664 None:intergenic 55.0%
GTGAGGGCCATAGATGTCAG+AGG + chr7_1:13808916-13808935 None:intergenic 55.0%
GGAGGAGTTCGTTGGTGTGA+GGG + chr7_1:13808932-13808951 None:intergenic 55.0%
AGGAGGAGTTCGTTGGTGTG+AGG + chr7_1:13808933-13808952 None:intergenic 55.0%
CACACCAACGAACTCCTCCT+TGG - chr7_1:13808933-13808952 Msa1010590:three_prime_UTR 55.0%
! CGTCTCAGCTTGCATTGGCA+TGG - chr7_1:13810775-13810794 Msa1010590:CDS 55.0%
TCGGGCACACGTCGTTTCCT+TGG + chr7_1:13810809-13810828 None:intergenic 60.0%
AACGACGTGTGCCCGATACC+TGG - chr7_1:13810813-13810832 Msa1010590:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 13808594 13811444 13808594 ID=Msa1010590;Name=Msa1010590
chr7_1 mRNA 13808594 13811444 13808594 ID=Msa1010590-mRNA-1;Parent=Msa1010590;Name=Msa1010590-mRNA-1;_AED=0.32;_eAED=0.32;_QI=516|0.75|0.8|1|0.5|0.6|5|428|244
chr7_1 exon 13808594 13809351 13808594 ID=Msa1010590-mRNA-1:exon:3573;Parent=Msa1010590-mRNA-1
chr7_1 exon 13809757 13809859 13809757 ID=Msa1010590-mRNA-1:exon:3572;Parent=Msa1010590-mRNA-1
chr7_1 exon 13810124 13810296 13810124 ID=Msa1010590-mRNA-1:exon:3571;Parent=Msa1010590-mRNA-1
chr7_1 exon 13810702 13810817 13810702 ID=Msa1010590-mRNA-1:exon:3570;Parent=Msa1010590-mRNA-1
chr7_1 exon 13810916 13811444 13810916 ID=Msa1010590-mRNA-1:exon:3569;Parent=Msa1010590-mRNA-1
chr7_1 five_prime_UTR 13810929 13811444 13810929 ID=Msa1010590-mRNA-1:five_prime_utr;Parent=Msa1010590-mRNA-1
chr7_1 CDS 13810916 13810928 13810916 ID=Msa1010590-mRNA-1:cds;Parent=Msa1010590-mRNA-1
chr7_1 CDS 13810702 13810817 13810702 ID=Msa1010590-mRNA-1:cds;Parent=Msa1010590-mRNA-1
chr7_1 CDS 13810124 13810296 13810124 ID=Msa1010590-mRNA-1:cds;Parent=Msa1010590-mRNA-1
chr7_1 CDS 13809757 13809859 13809757 ID=Msa1010590-mRNA-1:cds;Parent=Msa1010590-mRNA-1
chr7_1 CDS 13809022 13809351 13809022 ID=Msa1010590-mRNA-1:cds;Parent=Msa1010590-mRNA-1
chr7_1 three_prime_UTR 13808594 13809021 13808594 ID=Msa1010590-mRNA-1:three_prime_utr;Parent=Msa1010590-mRNA-1
Gene Sequence

>Msa1010590

ATGAGTATGTGTGGTGATCCAGCTTACGTGAGAGAAGCTTGTGAAGCTAGCTTGAAGAGACTTGATATTGATTGCATTGATCTCTATTATCAACATCGTATTGATACTCGTCTTCCAATTGAAATCACGATTGGGGAGCTTAAGAAACTAGTTGAAGAGGGAAAAATAAAATACATTGGTTTGTCTGAAGCCTCAGCTTCAACAATCAGAAGAGCACATGCAGTTCATCCAATAACAGCTGTGCAATTGGAGTGGTCACTATGGTCAAGAGATGTTGAGGAAGAAATAATTCCAACTTGCAGGGAACTTGGTATTGGAATTGTTGCATATAGTCCTCTTGGACGAGGATTCTTTTCATCAGGAACAAAGATTGTTGAGAACTTAACAAAGGATGACTACCGCCAGATGCCTAGATTTCAACCTGAAAACCTGCAGCAGAATCAGACTATATTTGAGAGGGTTAATGAACTGGCTACAAAGAAGGGATGTACTCCGTCTCAGCTTGCATTGGCATGGCTTCATCACCAAGGAAACGACGTGTGCCCGATACCTGGAACCACCAAAATGGAGAACTTTAATCAAAACATTGGTGCTTTATCTGTTAAACTAACACAAGAAGAAATGGCAGAACTCGAGTCTTTAGCAGATGCTGTCAAGGGTGGTAGATATGGGGATGAAATAAGTACATGGAAGAATTCTGATACTCCACCACTCTCTTCTTGGAAAGCTGTGTAA
Protein sequence

>Msa1010590

MSMCGDPAYVREACEASLKRLDIDCIDLYYQHRIDTRLPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFFSSGTKIVENLTKDDYRQMPRFQPENLQQNQTIFERVNELATKKGCTPSQLALAWLHHQGNDVCPIPGTTKMENFNQNIGALSVKLTQEEMAELESLADAVKGGRYGDEISTWKNSDTPPLSSWKAV*