AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1052150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1052150 MtrunA17_Chr7g0222171 93.195 338 22 1 1 338 1 337 0.0 652
Msa1052150 MtrunA17_Chr7g0221791 89.118 340 36 1 1 340 1 339 0.0 637
Msa1052150 MtrunA17_Chr7g0222121 81.016 374 36 2 1 340 1 373 0.0 619
Msa1052150 MtrunA17_Chr1g0204651 59.524 336 129 5 4 333 5 339 2.22e-139 398
Msa1052150 MtrunA17_Chr7g0274061 58.160 337 131 5 6 333 13 348 6.60e-138 395
Msa1052150 MtrunA17_Chr7g0274071 57.015 335 136 5 4 333 13 344 1.02e-137 395
Msa1052150 MtrunA17_Chr7g0274041 55.621 338 143 5 4 335 7 343 6.60e-131 377
Msa1052150 MtrunA17_Chr7g0274081 57.143 196 77 3 144 333 2 196 1.38e-79 241
Msa1052150 MtrunA17_Chr7g0221781 82.443 131 22 1 1 131 1 130 1.13e-73 224
Msa1052150 MtrunA17_Chr7g0221771 85.586 111 16 0 230 340 3 113 2.84e-65 201
Msa1052150 MtrunA17_Chr7g0222141 90.244 82 8 0 149 230 65 146 1.34e-48 160
Msa1052150 MtrunA17_Chr7g0222151 89.189 74 8 0 230 303 3 76 2.59e-45 149
Msa1052150 MtrunA17_Chr7g0221801 88.732 71 8 0 1 71 1 71 4.46e-41 138
Msa1052150 MtrunA17_Chr3g0095421 30.172 348 187 11 1 315 32 356 2.04e-32 124
Msa1052150 MtrunA17_Chr3g0127491 27.946 297 177 11 36 311 69 349 2.03e-24 102
Msa1052150 MtrunA17_Chr1g0167421 27.429 350 200 14 8 310 65 407 6.50e-24 101
Msa1052150 MtrunA17_Chr1g0169691 27.077 325 206 12 9 313 6 319 4.18e-20 89.7
Msa1052150 MtrunA17_Chr7g0274091 48.810 84 42 1 6 88 11 94 7.71e-20 84.0
Msa1052150 MtrunA17_Chr8g0380261 25.291 344 205 12 13 310 48 385 1.71e-17 82.8
Msa1052150 MtrunA17_Chr4g0049341 31.019 216 135 7 8 214 5 215 4.85e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1052150 AT1G60710.1 77.219 338 75 1 4 339 7 344 0.0 548
Msa1052150 AT1G60730.1 77.219 338 75 1 4 339 7 344 0.0 545
Msa1052150 AT1G60690.1 75.811 339 80 1 4 340 7 345 0.0 545
Msa1052150 AT1G60680.1 75.221 339 81 2 4 339 7 345 0.0 535
Msa1052150 AT1G60730.3 72.905 358 75 2 4 339 7 364 0.0 532
Msa1052150 AT1G10810.1 71.176 340 96 1 2 339 5 344 0.0 506
Msa1052150 AT1G60750.1 72.271 339 74 3 4 339 8 329 6.92e-179 498
Msa1052150 AT1G10810.3 71.587 271 75 1 71 339 22 292 1.25e-144 410
Msa1052150 AT1G60680.2 78.947 228 47 1 4 230 7 234 4.13e-131 374
Msa1052150 AT1G10810.2 73.504 234 62 0 2 235 5 238 2.27e-123 355
Msa1052150 AT1G60730.2 75.540 139 34 0 4 142 7 145 3.89e-72 222
Msa1052150 AT1G06690.1 29.819 332 199 11 6 315 48 367 6.32e-27 109
Msa1052150 AT5G53580.1 30.000 290 160 11 46 311 80 350 9.30e-26 106
Msa1052150 AT1G04690.1 28.076 317 179 11 9 297 6 301 2.05e-24 102
Msa1052150 AT1G04420.1 26.479 355 207 14 8 315 60 407 2.53e-23 100
Msa1052150 AT4G33670.1 26.829 328 207 10 1 315 1 308 5.86e-23 97.8
Msa1052150 AT2G37790.1 25.723 311 166 14 43 328 35 305 4.86e-13 69.3

Find 110 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATTTGTTACATGTTTA+AGG 0.082771 7_2:-20328249 Msa1052150:three_prime_UTR
AAATTTCCCTTCAATATATT+TGG 0.148190 7_2:+20330358 None:intergenic
TCCAATTGCACAGCTGTTAT+TGG 0.154954 7_2:+20329705 None:intergenic
TTGATTAAAGTTCTCCATTT+TGG 0.183974 7_2:+20328707 None:intergenic
CCGTCTGTTTGATAAACTAT+TGG 0.229193 7_2:-20328209 Msa1052150:three_prime_UTR
GCTTCAGGTTTATTTAAATA+AGG 0.258608 7_2:+20330999 None:intergenic
AAGAAATAATTCCAACTTGC+AGG 0.276199 7_2:-20329653 Msa1052150:intron
CACACCAACGAACTCCTTCT+TGG 0.278970 7_2:-20330613 Msa1052150:CDS
ATACTCCACCACTCTCTTCT+TGG 0.280266 7_2:-20328566 Msa1052150:CDS
CTTGATACCTCTGACATCTA+TGG 0.288925 7_2:-20330640 Msa1052150:CDS
CTGTAAACCGGCACTGTCTA+TGG 0.295876 7_2:-20328394 Msa1052150:three_prime_UTR
GTTGAATTGGCTACAAAGTT+TGG 0.298080 7_2:-20330383 Msa1052150:CDS
GAAGGGAAATTTGAGATCTT+TGG 0.300695 7_2:-20330347 Msa1052150:CDS
GCTTTATGAATTGAATTAGA+TGG 0.319926 7_2:-20328431 Msa1052150:three_prime_UTR
TTATATAGTATTAGGATAGA+AGG 0.343962 7_2:-20330857 Msa1052150:five_prime_UTR
AGTGAGAGAGAAGGTTGAAT+TGG 0.360017 7_2:-20330396 Msa1052150:CDS
AATCAAACCGTGATTTCAAT+TGG 0.361716 7_2:+20330224 None:intergenic
GATACCTGGAACCACCAAAA+TGG 0.362093 7_2:-20328721 Msa1052150:CDS
CATACTGATTTATTTGTTGA+AGG 0.363033 7_2:+20328491 None:intergenic
TCCAATAACAGCTGTGCAAT+TGG 0.363190 7_2:-20329706 Msa1052150:CDS
ATGATTTCATCTATTACCTT+TGG 0.364081 7_2:-20328182 Msa1052150:three_prime_UTR
TTTCTTAGGGAACTTGGTAT+TGG 0.374176 7_2:-20329377 Msa1052150:intron
ATAATTTGTTACATGTTTAA+GGG 0.377104 7_2:-20328248 Msa1052150:three_prime_UTR
GCTGTCAAGGGTGGTAGATA+TGG 0.391549 7_2:-20328618 Msa1052150:CDS
TCGGGCACACGTTGTTTCCT+TGG 0.393811 7_2:+20328742 None:intergenic
TTAAGATGAAGTTGAATACT+AGG 0.401407 7_2:+20328157 None:intergenic
TACAACCAAATTCATTCAAA+AGG 0.408600 7_2:+20328463 None:intergenic
ATTTGAGAGGGTTAATGAAC+TGG 0.426318 7_2:-20328817 Msa1052150:CDS
CTGTCAAGGGTGGTAGATAT+GGG 0.429429 7_2:-20328617 Msa1052150:CDS
GTTTATTTATAATTAGCTTC+AGG 0.430810 7_2:+20330984 None:intergenic
TAAACTAACACAAGAAGAAA+TGG 0.436815 7_2:-20328664 Msa1052150:CDS
TTAATGAGAGCAATCATATC+AGG 0.441235 7_2:+20330691 None:intergenic
CTTGGTTGCATGAGCATGTC+AGG 0.442441 7_2:-20330739 Msa1052150:CDS
GCAGTAGGAAGAATGAAGTT+AGG 0.442452 7_2:-20330793 Msa1052150:CDS
AAAAGTGACACCAGATTGTA+TGG 0.442868 7_2:+20330663 None:intergenic
AGAGCAATCATATCAGGTTC+AGG 0.444114 7_2:+20330697 None:intergenic
ATATAGTCTGATTCTGCTGC+AGG 0.450000 7_2:+20328838 None:intergenic
CAAGCTTCTCTGACGTAAGC+TGG 0.451335 7_2:+20330320 None:intergenic
GTGCCGGTTTACAGTTCAAC+CGG 0.458220 7_2:+20328403 None:intergenic
ATTAACCATGCCATACAATC+TGG 0.462011 7_2:-20330673 Msa1052150:CDS
ATTGTTGCATATAGTCCTCT+TGG 0.471189 7_2:-20329353 Msa1052150:CDS
AATTGTGGACAGGCTTTAAG+AGG 0.474129 7_2:-20330422 Msa1052150:intron
TTTGGAGCCAAATATATTGA+AGG 0.475808 7_2:-20330365 Msa1052150:CDS
TAATGAACTGGCTACAAAGA+AGG 0.479658 7_2:-20328805 Msa1052150:CDS
ATCATATCAGGTTCAGGCTT+AGG 0.483085 7_2:+20330703 None:intergenic
AAGAGGAGGAGTGAGAGAGA+AGG 0.485439 7_2:-20330405 Msa1052150:CDS
TATTTATAATTAGCTGATGT+CGG 0.488282 7_2:+20330917 None:intergenic
ATTGAATTAGATGGTTCAAC+CGG 0.489942 7_2:-20328422 Msa1052150:three_prime_UTR
CAACCGGTTGAACTGTAAAC+CGG 0.492517 7_2:-20328406 Msa1052150:three_prime_UTR
TAAGATGAAGTTGAATACTA+GGG 0.497019 7_2:+20328158 None:intergenic
CGTCTCAGCTTGCATTGGCA+TGG 0.497948 7_2:-20328773 Msa1052150:CDS
ATGAGCATGTCAGGTGTCTA+TGG 0.498898 7_2:-20330730 Msa1052150:CDS
TGCAATTGGAGTGGTCACTA+TGG 0.500317 7_2:-20329692 Msa1052150:CDS
AACAACGTGTGCCCGATACC+TGG 0.501171 7_2:-20328735 Msa1052150:CDS
GAAGTGTCCTTGCAAGGACT+TGG 0.508887 7_2:-20330757 Msa1052150:CDS
GTCTTTAGCAGATGCTGTCA+AGG 0.511022 7_2:-20328631 Msa1052150:CDS
TAATTCAATTCATAAAGCAT+TGG 0.511253 7_2:+20328436 None:intergenic
GAATATCTCCGCCTACCACC+AGG 0.518798 7_2:+20330892 None:intergenic
ACTGTCTATGGTTCATTGAA+CGG 0.519595 7_2:-20328382 Msa1052150:three_prime_UTR
CAGTTCAATATTTAAAACAT+TGG 0.523144 7_2:-20328342 Msa1052150:three_prime_UTR
TCGTCTTCCAATTGAAATCA+CGG 0.530494 7_2:-20330231 Msa1052150:intron
GAAGTTAGGATCACAAGGAA+TGG 0.532873 7_2:-20330779 Msa1052150:CDS
TCTTCTGATTGTTGAAGCTG+AGG 0.532875 7_2:+20329743 None:intergenic
ATAAGGCTAAAATATATACT+TGG 0.533945 7_2:+20331016 None:intergenic
ACTAAATCAAACCTGCAAGT+TGG 0.537019 7_2:+20329642 None:intergenic
AGAAGAACAATGACAGCAGT+AGG 0.537429 7_2:-20330808 Msa1052150:exon
AAGAAATAATTAGCTGATGT+CGG 0.539492 7_2:+20330947 None:intergenic
TACTCCGTCTCAGCTTGCAT+TGG 0.539631 7_2:-20328778 Msa1052150:CDS
AAGTAAGAACCTTTCCAAGA+AGG 0.544038 7_2:+20330599 None:intergenic
GAGAACTTTAATCAAAACAT+TGG 0.545978 7_2:-20328699 Msa1052150:CDS
GAAGGAGTTCGTTGGTGTGA+GGG 0.546165 7_2:+20330617 None:intergenic
AATGAACTGGCTACAAAGAA+GGG 0.546567 7_2:-20328804 Msa1052150:CDS
CTTTCCAAGAAGGAGTTCGT+TGG 0.553887 7_2:+20330609 None:intergenic
CATGCCAATGCAAGCTGAGA+CGG 0.554180 7_2:+20328774 None:intergenic
CAACGAACTCCTTCTTGGAA+AGG 0.555048 7_2:-20330608 Msa1052150:intron
CAGCTAATTATAAATAAACC+TGG 0.555338 7_2:-20330910 Msa1052150:five_prime_UTR
GATGTCGGCACAACAAAGAA+AGG 0.563203 7_2:+20330962 None:intergenic
AACAAAGGATGACTACCGCC+AGG 0.563602 7_2:-20329288 Msa1052150:intron
TTGGAGCCAAATATATTGAA+GGG 0.564347 7_2:-20330364 Msa1052150:CDS
ATATCAGGTTCAGGCTTAGG+AGG 0.568606 7_2:+20330706 None:intergenic
ATAGTTTCAAGTATTTGATG+TGG 0.572074 7_2:-20328307 Msa1052150:three_prime_UTR
GCATATAGTCCTCTTGGACG+AGG 0.577164 7_2:-20329347 Msa1052150:CDS
CAATGAACCATAGACAGTGC+CGG 0.581244 7_2:+20328387 None:intergenic
AGAATCAGACTATATTTGAG+AGG 0.585843 7_2:-20328830 Msa1052150:CDS
CATGCAACCAAGTCCTTGCA+AGG 0.590784 7_2:+20330750 None:intergenic
GGAATGGAAGTGTCCTTGCA+AGG 0.592055 7_2:-20330763 Msa1052150:CDS
TTATAAATAAACCTGGTGGT+AGG 0.593461 7_2:-20330903 Msa1052150:five_prime_UTR
AGAAGGAGTTCGTTGGTGTG+AGG 0.603074 7_2:+20330616 None:intergenic
GAATCAGACTATATTTGAGA+GGG 0.604511 7_2:-20328829 Msa1052150:CDS
GAAAAGAATCCTCGTCCAAG+AGG 0.611487 7_2:+20329338 None:intergenic
CCAATAGTTTATCAAACAGA+CGG 0.613088 7_2:+20328209 None:intergenic
ACTATGGTCAAGAGATGTTG+AGG 0.614034 7_2:-20329676 Msa1052150:CDS
TGTGGACAGGCTTTAAGAGG+AGG 0.614236 7_2:-20330419 Msa1052150:intron
ATGGGGATGAAATAAGTACA+TGG 0.614624 7_2:-20328599 Msa1052150:CDS
TAAATAAACCTGGTGGTAGG+CGG 0.621590 7_2:-20330900 Msa1052150:five_prime_UTR
TCTTTAGCAGATGCTGTCAA+GGG 0.626442 7_2:-20328630 Msa1052150:CDS
AGTTGAATACTAGGGGCCAA+AGG 0.626571 7_2:+20328166 None:intergenic
GATTGTTGAGAACTTAACAA+AGG 0.637901 7_2:-20329303 Msa1052150:CDS
TGACACCAGATTGTATGGCA+TGG 0.638719 7_2:+20330668 None:intergenic
AGAATGAAGTTAGGATCACA+AGG 0.639560 7_2:-20330784 Msa1052150:CDS
TTAGCAGATGCTGTCAAGGG+TGG 0.645754 7_2:-20328627 Msa1052150:CDS
AAGATGAAGTTGAATACTAG+GGG 0.647838 7_2:+20328159 None:intergenic
GCTTTCCAAGAAGAGAGTGG+TGG 0.651055 7_2:+20328561 None:intergenic
TAACAGCTGTGCAATTGGAG+TGG 0.661184 7_2:-20329701 Msa1052150:CDS
TTCATTGAACGGTTTGACTG+TGG 0.662908 7_2:-20328371 Msa1052150:three_prime_UTR
ACAGCTTTCCAAGAAGAGAG+TGG 0.666396 7_2:+20328558 None:intergenic
GTGAGGGCCATAGATGTCAG+AGG 0.676572 7_2:+20330633 None:intergenic
TTGGCATGGCTTCATCACCA+AGG 0.680145 7_2:-20328759 Msa1052150:CDS
CTAATTATAAATAAACCTGG+TGG 0.689473 7_2:-20330907 Msa1052150:five_prime_UTR
TGTCAAGGGTGGTAGATATG+GGG 0.702694 7_2:-20328616 Msa1052150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGATTTTTTTTTTCTTA+GGG - chr7_2:20329761-20329780 Msa1052150:CDS 10.0%
!!! TAATTAAAATAGAACATTTT+GGG + chr7_2:20330176-20330195 None:intergenic 10.0%
!!! CTTCAATTTTATATAGTATT+AGG - chr7_2:20328286-20328305 Msa1052150:three_prime_UTR 15.0%
!! TATAAAAATGTGTTTCAATA+TGG + chr7_2:20329035-20329054 None:intergenic 15.0%
!! TATTACCTAAAATTAATGTT+TGG - chr7_2:20329057-20329076 Msa1052150:intron 15.0%
!!! TTTATCCAAACATTAATTTT+AGG + chr7_2:20329065-20329084 None:intergenic 15.0%
!!! TGGATAAATTATTTTCAAAA+AGG - chr7_2:20329077-20329096 Msa1052150:intron 15.0%
!!! GTTATGATTTTTTTTTTCTT+AGG - chr7_2:20329760-20329779 Msa1052150:CDS 15.0%
!!! CTAATTAAAATAGAACATTT+TGG + chr7_2:20330177-20330196 None:intergenic 15.0%
!! AGATATTTAATAATTGATGT+AGG + chr7_2:20330201-20330220 None:intergenic 15.0%
!! ACAAATAGAAGATTATATTT+AGG + chr7_2:20330255-20330274 None:intergenic 15.0%
!!! ATAATTTGTTACATGTTTAA+GGG - chr7_2:20330903-20330922 Msa1052150:five_prime_UTR 15.0%
!! ATAAGGCTAAAATATATACT+TGG + chr7_2:20328138-20328157 None:intergenic 20.0%
!!! GTTTATTTATAATTAGCTTC+AGG + chr7_2:20328170-20328189 None:intergenic 20.0%
!! TATTTATAATTAGCTGATGT+CGG + chr7_2:20328237-20328256 None:intergenic 20.0%
!! TTATATAGTATTAGGATAGA+AGG - chr7_2:20328294-20328313 Msa1052150:three_prime_UTR 20.0%
!! AAATTTCCCTTCAATATATT+TGG + chr7_2:20328796-20328815 None:intergenic 20.0%
!!! AAAATTCTTTGATTCCATTT+TGG - chr7_2:20328956-20328975 Msa1052150:intron 20.0%
!! TTAAAATTGCAATGATATGA+AGG - chr7_2:20329581-20329600 Msa1052150:intron 20.0%
!! ACGATTGTAATTTAAGAAAA+TGG - chr7_2:20329618-20329637 Msa1052150:intron 20.0%
!! AAAAAAAATCATAACTCATG+AGG + chr7_2:20329755-20329774 None:intergenic 20.0%
!! TAATTCAATTCATAAAGCAT+TGG + chr7_2:20330718-20330737 None:intergenic 20.0%
!!! CAATGTTTTAAATATTGAAC+TGG + chr7_2:20330811-20330830 None:intergenic 20.0%
!!! CAGTTCAATATTTAAAACAT+TGG - chr7_2:20330809-20330828 Msa1052150:exon 20.0%
!!! CATAATTTGTTACATGTTTA+AGG - chr7_2:20330902-20330921 Msa1052150:five_prime_UTR 20.0%
!! GCTTCAGGTTTATTTAAATA+AGG + chr7_2:20328155-20328174 None:intergenic 25.0%
! AAGAAATAATTAGCTGATGT+CGG + chr7_2:20328207-20328226 None:intergenic 25.0%
! CAGCTAATTATAAATAAACC+TGG - chr7_2:20328241-20328260 Msa1052150:three_prime_UTR 25.0%
! CTAATTATAAATAAACCTGG+TGG - chr7_2:20328244-20328263 Msa1052150:three_prime_UTR 25.0%
! AACTTTCTCTCTTAATCTAA+CGG + chr7_2:20329137-20329156 None:intergenic 25.0%
! CTTAAAAAACTAGTTGAAGA+GGG - chr7_2:20329356-20329375 Msa1052150:CDS 25.0%
! GAGGGAAAAATAAAATACAT+TGG - chr7_2:20329374-20329393 Msa1052150:intron 25.0%
! TTGAATGTACTTACAAGTAT+TGG - chr7_2:20329647-20329666 Msa1052150:intron 25.0%
!!! TTTTTTTTTCTTAGGGAACT+TGG - chr7_2:20329768-20329787 Msa1052150:CDS 25.0%
! TATTAATGATGTCTATGTGT+CGG + chr7_2:20330009-20330028 None:intergenic 25.0%
! TGTTATATAGATTCTAACCT+TGG - chr7_2:20330147-20330166 Msa1052150:intron 25.0%
!! TTGATTAAAGTTCTCCATTT+TGG + chr7_2:20330447-20330466 None:intergenic 25.0%
! GAGAACTTTAATCAAAACAT+TGG - chr7_2:20330452-20330471 Msa1052150:intron 25.0%
! TAAACTAACACAAGAAGAAA+TGG - chr7_2:20330487-20330506 Msa1052150:intron 25.0%
!!! CATACTGATTTATTTGTTGA+AGG + chr7_2:20330663-20330682 None:intergenic 25.0%
!! AGTTTCCTTTTGAATGAATT+TGG - chr7_2:20330683-20330702 Msa1052150:CDS 25.0%
! TACAACCAAATTCATTCAAA+AGG + chr7_2:20330691-20330710 None:intergenic 25.0%
! GCTTTATGAATTGAATTAGA+TGG - chr7_2:20330720-20330739 Msa1052150:CDS 25.0%
!! ATAGTTTCAAGTATTTGATG+TGG - chr7_2:20330844-20330863 Msa1052150:five_prime_UTR 25.0%
! ATGATTTCATCTATTACCTT+TGG - chr7_2:20330969-20330988 Msa1052150:five_prime_UTR 25.0%
! TAAGATGAAGTTGAATACTA+GGG + chr7_2:20330996-20331015 None:intergenic 25.0%
! TTAAGATGAAGTTGAATACT+AGG + chr7_2:20330997-20331016 None:intergenic 25.0%
TTATAAATAAACCTGGTGGT+AGG - chr7_2:20328248-20328267 Msa1052150:three_prime_UTR 30.0%
TTAATGAGAGCAATCATATC+AGG + chr7_2:20328463-20328482 None:intergenic 30.0%
AATGTGTATGTGTGAAATTG+TGG - chr7_2:20328714-20328733 Msa1052150:CDS 30.0%
! TTTGGAGCCAAATATATTGA+AGG - chr7_2:20328786-20328805 Msa1052150:CDS 30.0%
TTGGAGCCAAATATATTGAA+GGG - chr7_2:20328787-20328806 Msa1052150:CDS 30.0%
AATCAAACCGTGATTTCAAT+TGG + chr7_2:20328930-20328949 None:intergenic 30.0%
! TCCCTTTTACTATGTAAGAT+TGG - chr7_2:20329329-20329348 Msa1052150:CDS 30.0%
CCCAATCTTACATAGTAAAA+GGG + chr7_2:20329333-20329352 None:intergenic 30.0%
! CCCTTTTACTATGTAAGATT+GGG - chr7_2:20329330-20329349 Msa1052150:CDS 30.0%
! CCTTTTACTATGTAAGATTG+GGG - chr7_2:20329331-20329350 Msa1052150:CDS 30.0%
GCTTAAAAAACTAGTTGAAG+AGG - chr7_2:20329355-20329374 Msa1052150:CDS 30.0%
AAGAAATAATTCCAACTTGC+AGG - chr7_2:20329498-20329517 Msa1052150:intron 30.0%
GATTGTTGAGAACTTAACAA+AGG - chr7_2:20329848-20329867 Msa1052150:intron 30.0%
AACTGACAAGTATGAAATAC+TGG - chr7_2:20329951-20329970 Msa1052150:intron 30.0%
AGAATCAGACTATATTTGAG+AGG - chr7_2:20330321-20330340 Msa1052150:CDS 30.0%
GAATCAGACTATATTTGAGA+GGG - chr7_2:20330322-20330341 Msa1052150:CDS 30.0%
! ATTAAAGTTCTCCATTTTGG+TGG + chr7_2:20330444-20330463 None:intergenic 30.0%
ATTGAATTAGATGGTTCAAC+CGG - chr7_2:20330729-20330748 Msa1052150:CDS 30.0%
CCAATAGTTTATCAAACAGA+CGG + chr7_2:20330945-20330964 None:intergenic 30.0%
AAGATGAAGTTGAATACTAG+GGG + chr7_2:20330995-20331014 None:intergenic 30.0%
AGAATGAAGTTAGGATCACA+AGG - chr7_2:20328367-20328386 Msa1052150:three_prime_UTR 35.0%
ATTAACCATGCCATACAATC+TGG - chr7_2:20328478-20328497 Msa1052150:three_prime_UTR 35.0%
AAAAGTGACACCAGATTGTA+TGG + chr7_2:20328491-20328510 None:intergenic 35.0%
AAGTAAGAACCTTTCCAAGA+AGG + chr7_2:20328555-20328574 None:intergenic 35.0%
GTTGAATTGGCTACAAAGTT+TGG - chr7_2:20328768-20328787 Msa1052150:CDS 35.0%
! GAAGGGAAATTTGAGATCTT+TGG - chr7_2:20328804-20328823 Msa1052150:CDS 35.0%
TCGTCTTCCAATTGAAATCA+CGG - chr7_2:20328920-20328939 Msa1052150:intron 35.0%
CTCAATTTAAGCTGCCAAAA+TGG + chr7_2:20328973-20328992 None:intergenic 35.0%
CTGAAGCAAACATATGCTTA+TGG + chr7_2:20328998-20329017 None:intergenic 35.0%
GCATATGTTTGCTTCAGTAA+AGG - chr7_2:20329001-20329020 Msa1052150:intron 35.0%
CCCCAATCTTACATAGTAAA+AGG + chr7_2:20329334-20329353 None:intergenic 35.0%
ACTAAATCAAACCTGCAAGT+TGG + chr7_2:20329512-20329531 None:intergenic 35.0%
TTATCTAGCATTTCTCTCTG+TGG - chr7_2:20329551-20329570 Msa1052150:intron 35.0%
AACGATTAAAGACGTGTGTT+TGG + chr7_2:20329707-20329726 None:intergenic 35.0%
AAACACACGTCTTTAATCGT+TGG - chr7_2:20329706-20329725 Msa1052150:CDS 35.0%
TTTCTTAGGGAACTTGGTAT+TGG - chr7_2:20329774-20329793 Msa1052150:CDS 35.0%
ATTGTTGCATATAGTCCTCT+TGG - chr7_2:20329798-20329817 Msa1052150:CDS 35.0%
TTTCATACTTGTCAGTTGAG+TGG + chr7_2:20329948-20329967 None:intergenic 35.0%
ATGAAATACTGGCACAAACA+TGG - chr7_2:20329962-20329981 Msa1052150:intron 35.0%
TCACATGTTCAGTATTGTGT+TGG - chr7_2:20330069-20330088 Msa1052150:intron 35.0%
! ACACGAAACCTTCAAGTTTA+AGG + chr7_2:20330130-20330149 None:intergenic 35.0%
!!! AGGTTTTCAGGTTGAAATCT+AGG + chr7_2:20330296-20330315 None:intergenic 35.0%
ATTTGAGAGGGTTAATGAAC+TGG - chr7_2:20330334-20330353 Msa1052150:CDS 35.0%
TAATGAACTGGCTACAAAGA+AGG - chr7_2:20330346-20330365 Msa1052150:CDS 35.0%
AATGAACTGGCTACAAAGAA+GGG - chr7_2:20330347-20330366 Msa1052150:CDS 35.0%
ATGGGGATGAAATAAGTACA+TGG - chr7_2:20330552-20330571 Msa1052150:intron 35.0%
ACTGTCTATGGTTCATTGAA+CGG - chr7_2:20330769-20330788 Msa1052150:CDS 35.0%
CCGTCTGTTTGATAAACTAT+TGG - chr7_2:20330942-20330961 Msa1052150:five_prime_UTR 35.0%
TAAATAAACCTGGTGGTAGG+CGG - chr7_2:20328251-20328270 Msa1052150:three_prime_UTR 40.0%
AGAAGAACAATGACAGCAGT+AGG - chr7_2:20328343-20328362 Msa1052150:three_prime_UTR 40.0%
GCAGTAGGAAGAATGAAGTT+AGG - chr7_2:20328358-20328377 Msa1052150:three_prime_UTR 40.0%
GAAGTTAGGATCACAAGGAA+TGG - chr7_2:20328372-20328391 Msa1052150:three_prime_UTR 40.0%
ATCATATCAGGTTCAGGCTT+AGG + chr7_2:20328451-20328470 None:intergenic 40.0%
AGAGCAATCATATCAGGTTC+AGG + chr7_2:20328457-20328476 None:intergenic 40.0%
CTTGATACCTCTGACATCTA+TGG - chr7_2:20328511-20328530 Msa1052150:three_prime_UTR 40.0%
GTATGTGTGAAATTGTGGAC+AGG - chr7_2:20328719-20328738 Msa1052150:CDS 40.0%
!! AATTGTGGACAGGCTTTAAG+AGG - chr7_2:20328729-20328748 Msa1052150:CDS 40.0%
AGTGAGAGAGAAGGTTGAAT+TGG - chr7_2:20328755-20328774 Msa1052150:CDS 40.0%
TCTTCTGATTGTTGAAGCTG+AGG + chr7_2:20329411-20329430 None:intergenic 40.0%
TCCAATAACAGCTGTGCAAT+TGG - chr7_2:20329445-20329464 Msa1052150:intron 40.0%
TCCAATTGCACAGCTGTTAT+TGG + chr7_2:20329449-20329468 None:intergenic 40.0%
ACTATGGTCAAGAGATGTTG+AGG - chr7_2:20329475-20329494 Msa1052150:intron 40.0%
CGAACACACCTTAAACTTGA+AGG - chr7_2:20330119-20330138 Msa1052150:intron 40.0%
!!! TAGAACATTTTGGGATGCCA+AGG + chr7_2:20330167-20330186 None:intergenic 40.0%
ATATAGTCTGATTCTGCTGC+AGG + chr7_2:20330316-20330335 None:intergenic 40.0%
!! ATTTTGGTGGTTCCAGGTAT+CGG + chr7_2:20330431-20330450 None:intergenic 40.0%
TCTTTAGCAGATGCTGTCAA+GGG - chr7_2:20330521-20330540 Msa1052150:intron 40.0%
TTCATTGAACGGTTTGACTG+TGG - chr7_2:20330780-20330799 Msa1052150:CDS 40.0%
GATGTCGGCACAACAAAGAA+AGG + chr7_2:20328192-20328211 None:intergenic 45.0%
ATGAGCATGTCAGGTGTCTA+TGG - chr7_2:20328421-20328440 Msa1052150:three_prime_UTR 45.0%
ATATCAGGTTCAGGCTTAGG+AGG + chr7_2:20328448-20328467 None:intergenic 45.0%
TGACACCAGATTGTATGGCA+TGG + chr7_2:20328486-20328505 None:intergenic 45.0%
CTTTCCAAGAAGGAGTTCGT+TGG + chr7_2:20328545-20328564 None:intergenic 45.0%
CAACGAACTCCTTCTTGGAA+AGG - chr7_2:20328543-20328562 Msa1052150:exon 45.0%
AAGTCACTTAGCTCGACGTT+AGG + chr7_2:20328678-20328697 None:intergenic 45.0%
CTTTCTCAGTCTACGATCAG+CGG - chr7_2:20329161-20329180 Msa1052150:intron 45.0%
TAACAGCTGTGCAATTGGAG+TGG - chr7_2:20329450-20329469 Msa1052150:intron 45.0%
TGCAATTGGAGTGGTCACTA+TGG - chr7_2:20329459-20329478 Msa1052150:intron 45.0%
!! GTTTGGTGTCAAACACGTGT+TGG + chr7_2:20329690-20329709 None:intergenic 45.0%
!! CTTTAATCGTTGGTGCTGCA+TGG - chr7_2:20329716-20329735 Msa1052150:CDS 45.0%
GAAAAGAATCCTCGTCCAAG+AGG + chr7_2:20329816-20329835 None:intergenic 45.0%
! GGACGAGGATTCTTTTCATC+AGG - chr7_2:20329819-20329838 Msa1052150:intron 45.0%
! ATGCTTTTCGACAAACCTGG+CGG + chr7_2:20329881-20329900 None:intergenic 45.0%
! AGCATGCTTTTCGACAAACC+TGG + chr7_2:20329884-20329903 None:intergenic 45.0%
! TGATTCTGCTGCAGGTTTTC+AGG + chr7_2:20330308-20330327 None:intergenic 45.0%
!! TTTTGGTGGTTCCAGGTATC+GGG + chr7_2:20330430-20330449 None:intergenic 45.0%
GATACCTGGAACCACCAAAA+TGG - chr7_2:20330430-20330449 Msa1052150:intron 45.0%
!! TTCTCCATTTTGGTGGTTCC+AGG + chr7_2:20330437-20330456 None:intergenic 45.0%
GTCTTTAGCAGATGCTGTCA+AGG - chr7_2:20330520-20330539 Msa1052150:intron 45.0%
CTGTCAAGGGTGGTAGATAT+GGG - chr7_2:20330534-20330553 Msa1052150:intron 45.0%
TGTCAAGGGTGGTAGATATG+GGG - chr7_2:20330535-20330554 Msa1052150:intron 45.0%
ATACTCCACCACTCTCTTCT+TGG - chr7_2:20330585-20330604 Msa1052150:intron 45.0%
ACAGCTTTCCAAGAAGAGAG+TGG + chr7_2:20330596-20330615 None:intergenic 45.0%
CAACCGGTTGAACTGTAAAC+CGG - chr7_2:20330745-20330764 Msa1052150:CDS 45.0%
CAATGAACCATAGACAGTGC+CGG + chr7_2:20330767-20330786 None:intergenic 45.0%
AGTTGAATACTAGGGGCCAA+AGG + chr7_2:20330988-20331007 None:intergenic 45.0%
!! GGAATGGAAGTGTCCTTGCA+AGG - chr7_2:20328388-20328407 Msa1052150:three_prime_UTR 50.0%
! GAAGTGTCCTTGCAAGGACT+TGG - chr7_2:20328394-20328413 Msa1052150:three_prime_UTR 50.0%
CATGCAACCAAGTCCTTGCA+AGG + chr7_2:20328404-20328423 None:intergenic 50.0%
CTTGGTTGCATGAGCATGTC+AGG - chr7_2:20328412-20328431 Msa1052150:three_prime_UTR 50.0%
GAAGGAGTTCGTTGGTGTGA+GGG + chr7_2:20328537-20328556 None:intergenic 50.0%
AGAAGGAGTTCGTTGGTGTG+AGG + chr7_2:20328538-20328557 None:intergenic 50.0%
CACACCAACGAACTCCTTCT+TGG - chr7_2:20328538-20328557 Msa1052150:exon 50.0%
!! TGTGGACAGGCTTTAAGAGG+AGG - chr7_2:20328732-20328751 Msa1052150:CDS 50.0%
AAGAGGAGGAGTGAGAGAGA+AGG - chr7_2:20328746-20328765 Msa1052150:CDS 50.0%
CAAGCTTCTCTGACGTAAGC+TGG + chr7_2:20328834-20328853 None:intergenic 50.0%
GCATATAGTCCTCTTGGACG+AGG - chr7_2:20329804-20329823 Msa1052150:CDS 50.0%
AACAAAGGATGACTACCGCC+AGG - chr7_2:20329863-20329882 Msa1052150:intron 50.0%
GTCGGTGACACTATCATGTC+AGG + chr7_2:20329991-20330010 None:intergenic 50.0%
TACTCCGTCTCAGCTTGCAT+TGG - chr7_2:20330373-20330392 Msa1052150:CDS 50.0%
CATGCCAATGCAAGCTGAGA+CGG + chr7_2:20330380-20330399 None:intergenic 50.0%
TTGGCATGGCTTCATCACCA+AGG - chr7_2:20330392-20330411 Msa1052150:CDS 50.0%
TTAGCAGATGCTGTCAAGGG+TGG - chr7_2:20330524-20330543 Msa1052150:intron 50.0%
GCTGTCAAGGGTGGTAGATA+TGG - chr7_2:20330533-20330552 Msa1052150:intron 50.0%
GCTTTCCAAGAAGAGAGTGG+TGG + chr7_2:20330593-20330612 None:intergenic 50.0%
!! GTGCCGGTTTACAGTTCAAC+CGG + chr7_2:20330751-20330770 None:intergenic 50.0%
CTGTAAACCGGCACTGTCTA+TGG - chr7_2:20330757-20330776 Msa1052150:CDS 50.0%
GAATATCTCCGCCTACCACC+AGG + chr7_2:20328262-20328281 None:intergenic 55.0%
GTGAGGGCCATAGATGTCAG+AGG + chr7_2:20328521-20328540 None:intergenic 55.0%
TCAGTCTACGATCAGCGGCA+TGG - chr7_2:20329166-20329185 Msa1052150:intron 55.0%
! CGTCTCAGCTTGCATTGGCA+TGG - chr7_2:20330378-20330397 Msa1052150:CDS 55.0%
! TCGGGCACACGTTGTTTCCT+TGG + chr7_2:20330412-20330431 None:intergenic 55.0%
AACAACGTGTGCCCGATACC+TGG - chr7_2:20330416-20330435 Msa1052150:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 20328126 20331047 20328126 ID=Msa1052150;Name=Msa1052150
chr7_2 mRNA 20328126 20331047 20328126 ID=Msa1052150-mRNA-1;Parent=Msa1052150;Name=Msa1052150-mRNA-1;_AED=0.33;_eAED=0.33;_QI=226|1|1|1|1|1|5|428|340
chr7_2 exon 20328126 20328886 20328126 ID=Msa1052150-mRNA-1:exon:4530;Parent=Msa1052150-mRNA-1
chr7_2 exon 20329289 20329391 20329289 ID=Msa1052150-mRNA-1:exon:4529;Parent=Msa1052150-mRNA-1
chr7_2 exon 20329654 20329826 20329654 ID=Msa1052150-mRNA-1:exon:4528;Parent=Msa1052150-mRNA-1
chr7_2 exon 20330232 20330432 20330232 ID=Msa1052150-mRNA-1:exon:4527;Parent=Msa1052150-mRNA-1
chr7_2 exon 20330609 20331047 20330609 ID=Msa1052150-mRNA-1:exon:4526;Parent=Msa1052150-mRNA-1
chr7_2 five_prime_UTR 20330822 20331047 20330822 ID=Msa1052150-mRNA-1:five_prime_utr;Parent=Msa1052150-mRNA-1
chr7_2 CDS 20330609 20330821 20330609 ID=Msa1052150-mRNA-1:cds;Parent=Msa1052150-mRNA-1
chr7_2 CDS 20330232 20330432 20330232 ID=Msa1052150-mRNA-1:cds;Parent=Msa1052150-mRNA-1
chr7_2 CDS 20329654 20329826 20329654 ID=Msa1052150-mRNA-1:cds;Parent=Msa1052150-mRNA-1
chr7_2 CDS 20329289 20329391 20329289 ID=Msa1052150-mRNA-1:cds;Parent=Msa1052150-mRNA-1
chr7_2 CDS 20328554 20328886 20328554 ID=Msa1052150-mRNA-1:cds;Parent=Msa1052150-mRNA-1
chr7_2 three_prime_UTR 20328126 20328553 20328126 ID=Msa1052150-mRNA-1:three_prime_utr;Parent=Msa1052150-mRNA-1
Gene Sequence

>Msa1052150

ATGACAGCAGTAGGAAGAATGAAGTTAGGATCACAAGGAATGGAAGTGTCCTTGCAAGGACTTGGTTGCATGAGCATGTCAGGTGTCTATGGTCCTCCTAAGCCTGAACCTGATATGATTGCTCTCATTAACCATGCCATACAATCTGGTGTCACTTTTCTTGATACCTCTGACATCTATGGCCCTCACACCAACGAACTCCTTCTTGGAAAGGCTTTAAGAGGAGGAGTGAGAGAGAAGGTTGAATTGGCTACAAAGTTTGGAGCCAAATATATTGAAGGGAAATTTGAGATCTTTGGTGATCCAGCTTACGTCAGAGAAGCTTGTGAAGCTAGCTTGAAGAGACTTGATATTGATTGCATTGATCTCTATTATCAACATCGTATTGATACTCGTCTTCCAATTGAAATCACGATTGGGGAGCTTAAAAAACTAGTTGAAGAGGGAAAAATAAAATACATTGGTTTGTCTGAAGCCTCAGCTTCAACAATCAGAAGAGCACATGCAGTTCATCCAATAACAGCTGTGCAATTGGAGTGGTCACTATGGTCAAGAGATGTTGAGGAAGAAATAATTCCAACTTGCAGGGAACTTGGTATTGGAATTGTTGCATATAGTCCTCTTGGACGAGGATTCTTTTCATCAGGAACAAAGATTGTTGAGAACTTAACAAAGGATGACTACCGCCAGTATATGCCTAGATTTCAACCTGAAAACCTGCAGCAGAATCAGACTATATTTGAGAGGGTTAATGAACTGGCTACAAAGAAGGGATGTACTCCGTCTCAGCTTGCATTGGCATGGCTTCATCACCAAGGAAACAACGTGTGCCCGATACCTGGAACCACCAAAATGGAGAACTTTAATCAAAACATTGGTGCTTTATCTGTTAAACTAACACAAGAAGAAATGGCAGAACTCGAGTCTTTAGCAGATGCTGTCAAGGGTGGTAGATATGGGGATGAAATAAGTACATGGAAGAATTCTGATACTCCACCACTCTCTTCTTGGAAAGCTGTGTAA
Protein sequence

>Msa1052150

MTAVGRMKLGSQGMEVSLQGLGCMSMSGVYGPPKPEPDMIALINHAIQSGVTFLDTSDIYGPHTNELLLGKALRGGVREKVELATKFGAKYIEGKFEIFGDPAYVREACEASLKRLDIDCIDLYYQHRIDTRLPIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFFSSGTKIVENLTKDDYRQYMPRFQPENLQQNQTIFERVNELATKKGCTPSQLALAWLHHQGNNVCPIPGTTKMENFNQNIGALSVKLTQEEMAELESLADAVKGGRYGDEISTWKNSDTPPLSSWKAV*