Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012340 | XP_013447467.1 | 90.936 | 342 | 16 | 3 | 1 | 330 | 1 | 339 | 0.0 | 617 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012340 | A0A072TXF9 | 90.936 | 342 | 16 | 3 | 1 | 330 | 1 | 339 | 0.0 | 617 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0439220 | Msa1012340 | 0.933837 | 1.019996e-95 | -8.615850e-47 |
Msa1012340 | Msa1012440 | 0.868620 | 5.704458e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012340 | MtrunA17_Chr7g0215511 | 90.936 | 342 | 16 | 3 | 1 | 330 | 1 | 339 | 0.0 | 617 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012340 | AT5G38360.1 | 64.396 | 323 | 88 | 6 | 27 | 330 | 17 | 331 | 3.46e-147 | 418 |
Msa1012340 | AT5G38360.3 | 66.321 | 193 | 58 | 4 | 27 | 216 | 17 | 205 | 1.64e-89 | 267 |
Msa1012340 | AT5G38360.2 | 64.571 | 175 | 55 | 4 | 27 | 198 | 17 | 187 | 2.62e-78 | 238 |
Find 99 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTATTATATTTCCAATTT+AGG | 0.160861 | 7_1:+17415408 | Msa1012340:CDS |
AGAATATCACATTTCCTATT+TGG | 0.180206 | 7_1:-17418236 | None:intergenic |
GAGCTTGTCATTTCCTAAAT+TGG | 0.182414 | 7_1:-17415421 | None:intergenic |
AGCAATCACTGCTAACAAAA+TGG | 0.244270 | 7_1:-17418150 | None:intergenic |
GTTTGTTCTGTACCTCCTTC+TGG | 0.269315 | 7_1:+17416219 | Msa1012340:CDS |
TGGAGGATCATGTTGTTAAA+AGG | 0.281293 | 7_1:+17416579 | Msa1012340:CDS |
CTGTACCTCCTTCTGGTAAT+AGG | 0.292018 | 7_1:+17416226 | Msa1012340:CDS |
AAAAGAGAAAGAAGAAAGAA+AGG | 0.303821 | 7_1:+17412477 | None:intergenic |
TGTTATGCTCTTTCTTTGCT+TGG | 0.318759 | 7_1:+17412872 | Msa1012340:CDS |
GTGCAGAAGTTATTCTTTCA+TGG | 0.322299 | 7_1:+17418065 | Msa1012340:CDS |
TGCTCTTTCTTTGCTTGGAC+AGG | 0.334651 | 7_1:+17412877 | Msa1012340:CDS |
AGAACTTCAACAGGGAGATT+TGG | 0.337654 | 7_1:-17417344 | None:intergenic |
TTCGGTTGCTGGTACACTTC+AGG | 0.341976 | 7_1:+17415088 | Msa1012340:CDS |
CCAGCTTTGGTATTTGTTCA+TGG | 0.349881 | 7_1:+17412782 | Msa1012340:CDS |
TGCCCTTCCTTCAGATTGTA+AGG | 0.354504 | 7_1:-17412665 | None:intergenic |
TGCTTCGCTTCCAGTTCCTT+TGG | 0.356897 | 7_1:+17417319 | Msa1012340:CDS |
GAAACCAATTGCTGCCTTCA+AGG | 0.360515 | 7_1:+17416396 | Msa1012340:CDS |
AATTTATACCCGGGGCTTAG+AGG | 0.382770 | 7_1:+17416186 | Msa1012340:CDS |
TTCAATTTAAATTACCTTGA+AGG | 0.386562 | 7_1:-17416410 | None:intergenic |
CCCAAAACAAGAACTTCAAC+AGG | 0.388064 | 7_1:-17417353 | None:intergenic |
ATCTTGCTCGGACATTCATT+TGG | 0.398314 | 7_1:+17415372 | Msa1012340:CDS |
TGTGTCCAAAGTACTACTTT+TGG | 0.398698 | 7_1:+17418461 | Msa1012340:three_prime_UTR |
AAAGAGAAAGAAGAAAGAAA+GGG | 0.399357 | 7_1:+17412478 | None:intergenic |
TTATCATGCTGCTTGGTGTT+GGG | 0.400202 | 7_1:+17412808 | Msa1012340:CDS |
GAACCAGAAGATTCGGTTGC+TGG | 0.401583 | 7_1:+17415077 | Msa1012340:CDS |
GTTATCATGCTGCTTGGTGT+TGG | 0.403568 | 7_1:+17412807 | Msa1012340:CDS |
GTTATTCTTTCATGGCTAAA+GGG | 0.404056 | 7_1:+17418073 | Msa1012340:CDS |
AGTTATTCTTTCATGGCTAA+AGG | 0.406540 | 7_1:+17418072 | Msa1012340:CDS |
AAAGAAAAGAAAAGAAAAGT+TGG | 0.408927 | 7_1:-17418527 | None:intergenic |
CAATAGAGGAGGGTCCAAAT+AGG | 0.417104 | 7_1:+17418222 | Msa1012340:three_prime_UTR |
TTTCACCAAGCTTCAAACTT+AGG | 0.423284 | 7_1:+17418199 | Msa1012340:three_prime_UTR |
AAAGTAGCAGAGGAAATGTT+TGG | 0.436375 | 7_1:+17418117 | Msa1012340:three_prime_UTR |
AAGTGAGTGTTCACCAGCTT+TGG | 0.436567 | 7_1:+17412769 | Msa1012340:CDS |
AGATTTGGCACCAAAGGAAC+TGG | 0.439812 | 7_1:-17417329 | None:intergenic |
TTGTCACCAGTTTGTGTTGA+AGG | 0.440218 | 7_1:+17418001 | Msa1012340:CDS |
ATTACCTTGAAGGCAGCAAT+TGG | 0.452074 | 7_1:-17416400 | None:intergenic |
ACATACAGCTTGGCTGCAAA+AGG | 0.462187 | 7_1:+17416506 | Msa1012340:CDS |
GCAAGTCCTTCAACACAAAC+TGG | 0.467319 | 7_1:-17418007 | None:intergenic |
AAATCCCAAAAGTAGTACTT+TGG | 0.468505 | 7_1:-17418466 | None:intergenic |
ACATGATGTTGGACCCTTCA+TGG | 0.469276 | 7_1:+17418035 | Msa1012340:CDS |
GTACCAGCAACCGAATCTTC+TGG | 0.470652 | 7_1:-17415080 | None:intergenic |
GCAATCACTGCTAACAAAAT+GGG | 0.473155 | 7_1:-17418149 | None:intergenic |
TTGCTCGGACATTCATTTGG+AGG | 0.474558 | 7_1:+17415375 | Msa1012340:CDS |
AACTAATGAAAGAAAGTTCA+CGG | 0.475580 | 7_1:+17417267 | Msa1012340:CDS |
TATGCAAAACTAAATAATAG+TGG | 0.476433 | 7_1:-17418278 | None:intergenic |
AAGTGATGAACCAGAAGATT+CGG | 0.482510 | 7_1:+17415070 | Msa1012340:CDS |
AAGCTCTCTTTCTCTTTGCA+AGG | 0.494797 | 7_1:+17416535 | Msa1012340:CDS |
TATTGCCTAAGTTTGAAGCT+TGG | 0.495708 | 7_1:-17418204 | None:intergenic |
TCTGCACCTTTCTCCCATGA+AGG | 0.497523 | 7_1:-17418049 | None:intergenic |
AGTAGCAGTATTGCAGAGAA+AGG | 0.504151 | 7_1:+17412628 | Msa1012340:CDS |
GCTTCAAACTTAGGCAATAG+AGG | 0.517568 | 7_1:+17418208 | Msa1012340:three_prime_UTR |
CTAATAGAAAATTTATACCC+GGG | 0.522357 | 7_1:+17416177 | Msa1012340:intron |
AAATGAATGTCCGAGCAAGA+TGG | 0.524223 | 7_1:-17415370 | None:intergenic |
CTGCACCTTTCTCCCATGAA+GGG | 0.526055 | 7_1:-17418048 | None:intergenic |
AAAGAAAAGTTGGATTGCAA+TGG | 0.529625 | 7_1:-17418517 | None:intergenic |
CCATGAACAAATACCAAAGC+TGG | 0.534811 | 7_1:-17412782 | None:intergenic |
TAACCAGATTGAGAAAAGAA+AGG | 0.540026 | 7_1:-17412845 | None:intergenic |
TTGGACCCTTCATGGGAGAA+AGG | 0.541489 | 7_1:+17418043 | Msa1012340:CDS |
ATGGAAGTTATCATGCTGCT+TGG | 0.546302 | 7_1:+17412801 | Msa1012340:CDS |
CAATCGCCACCCATCTTGCT+CGG | 0.547286 | 7_1:+17415360 | Msa1012340:CDS |
GTCCCTTACAATCTGAAGGA+AGG | 0.548049 | 7_1:+17412662 | Msa1012340:CDS |
AGGACAGCTCCTCTAAGCCC+CGG | 0.548358 | 7_1:-17416195 | None:intergenic |
AGGAAGAAAGAAAGTAGCAG+AGG | 0.549000 | 7_1:+17418107 | Msa1012340:exon |
GCTTCCTTCTGGTTTGAACA+TGG | 0.550424 | 7_1:+17412706 | Msa1012340:CDS |
AACTTTCTTAAATCAAACAA+TGG | 0.551344 | 7_1:-17417293 | None:intergenic |
ACAACATGATCCTCCATTGT+GGG | 0.558962 | 7_1:-17416572 | None:intergenic |
AATGAATGTCCGAGCAAGAT+GGG | 0.561915 | 7_1:-17415369 | None:intergenic |
ACAGGGAGATTTGGCACCAA+AGG | 0.562996 | 7_1:-17417335 | None:intergenic |
GTTGATTTATAGGATGCAGA+AGG | 0.563173 | 7_1:+17417950 | Msa1012340:intron |
CTTGGTGTTGGGCTGAACAG+TGG | 0.569616 | 7_1:+17412819 | Msa1012340:CDS |
TCCCTTACAATCTGAAGGAA+GGG | 0.571655 | 7_1:+17412663 | Msa1012340:CDS |
TTGGTAGGTGACATACAGCT+TGG | 0.571764 | 7_1:+17416496 | Msa1012340:intron |
ACTTCCATGTTCAAACCAGA+AGG | 0.571906 | 7_1:-17412710 | None:intergenic |
CATGATGTTGGACCCTTCAT+GGG | 0.577122 | 7_1:+17418036 | Msa1012340:CDS |
GCTAAAGGGTTTACACAAGT+AGG | 0.582277 | 7_1:+17418087 | Msa1012340:CDS |
TCAAACCAGAAGGAAGCTCA+TGG | 0.582892 | 7_1:-17412700 | None:intergenic |
AACAACATGATCCTCCATTG+TGG | 0.583467 | 7_1:-17416573 | None:intergenic |
GAGTGTCCCTTACAATCTGA+AGG | 0.583633 | 7_1:+17412658 | Msa1012340:CDS |
AACTTTGAAAATTGAACACA+CGG | 0.587008 | 7_1:-17412564 | None:intergenic |
GCCCTTCCTTCAGATTGTAA+GGG | 0.590813 | 7_1:-17412664 | None:intergenic |
TCTAATAGAAAATTTATACC+CGG | 0.591670 | 7_1:+17416176 | Msa1012340:intron |
CAAAACTAAATAATAGTGGT+CGG | 0.594660 | 7_1:-17418274 | None:intergenic |
GTTGGTTACCTATTACCAGA+AGG | 0.595739 | 7_1:-17416234 | None:intergenic |
GGACAGCTCCTCTAAGCCCC+GGG | 0.596185 | 7_1:-17416194 | None:intergenic |
TAATAGAAAATTTATACCCG+GGG | 0.599409 | 7_1:+17416178 | Msa1012340:intron |
GATGAAGCAACAGTGAGTAA+TGG | 0.603215 | 7_1:+17412523 | Msa1012340:exon |
TGAGTAATGGCAATGACAGT+GGG | 0.603814 | 7_1:+17412536 | Msa1012340:exon |
ACTTGCTCATGACATGATGT+TGG | 0.605959 | 7_1:+17418024 | Msa1012340:CDS |
TTAGGAAATGACAAGCTCAA+AGG | 0.607742 | 7_1:+17415426 | Msa1012340:CDS |
TCAAACTTAGGCAATAGAGG+AGG | 0.611515 | 7_1:+17418211 | Msa1012340:three_prime_UTR |
GACACACGCAACAGATGTTG+CGG | 0.612430 | 7_1:+17415317 | Msa1012340:intron |
GTGAGTAATGGCAATGACAG+TGG | 0.635161 | 7_1:+17412535 | Msa1012340:exon |
GCAATGGAAACAAGAAGACA+AGG | 0.658797 | 7_1:-17418501 | None:intergenic |
AAGGAGGTACAGAACAAACA+AGG | 0.662545 | 7_1:-17416215 | None:intergenic |
GGTTACCTATTACCAGAAGG+AGG | 0.668365 | 7_1:-17416231 | None:intergenic |
CAAACTTAGGCAATAGAGGA+GGG | 0.668980 | 7_1:+17418212 | Msa1012340:three_prime_UTR |
GAATGTCCGAGCAAGATGGG+TGG | 0.676336 | 7_1:-17415366 | None:intergenic |
CCAAAACAAGAACTTCAACA+GGG | 0.707218 | 7_1:-17417352 | None:intergenic |
TGACAAACCATAAAACTGTG+CGG | 0.747046 | 7_1:-17417984 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATATACTTAAATGTTT+AGG | - | chr7_1:17414766-17414785 | None:intergenic | 10.0% |
!! | AATAAAATTTCTTAAAATCT+GGG | - | chr7_1:17416988-17417007 | None:intergenic | 10.0% |
!!! | AATTACTTTTTTTTTTTTTG+TGG | + | chr7_1:17418304-17418323 | Msa1012340:intron | 10.0% |
!! | ATTAGATTAAACAAACAATT+TGG | - | chr7_1:17413464-17413483 | None:intergenic | 15.0% |
!!! | GTTCTTGAATTTTTTTTATA+AGG | + | chr7_1:17413500-17413519 | Msa1012340:intron | 15.0% |
!!! | TTTTTTATAAGGAAAATGTT+TGG | + | chr7_1:17413511-17413530 | Msa1012340:intron | 15.0% |
!! | ATAAACTCTTGTAAATAAAT+TGG | - | chr7_1:17414716-17414735 | None:intergenic | 15.0% |
!!! | TGATTTTGATATTATACTTT+TGG | + | chr7_1:17414981-17415000 | Msa1012340:intron | 15.0% |
!! | AAGATACTAAAAATTTAAGT+TGG | - | chr7_1:17416255-17416274 | None:intergenic | 15.0% |
!!! | TTCTTTACTTTTTTTATTAG+TGG | + | chr7_1:17416349-17416368 | Msa1012340:intron | 15.0% |
!! | AAAATATGTTTATAATTGAG+AGG | + | chr7_1:17416915-17416934 | Msa1012340:intron | 15.0% |
!! | CAATAAAATTTCTTAAAATC+TGG | - | chr7_1:17416989-17417008 | None:intergenic | 15.0% |
!!! | AAGAAATTTTATTGAAAGAA+TGG | + | chr7_1:17416995-17417014 | Msa1012340:intron | 15.0% |
!! | AAATATTAACAGAAAAATTC+AGG | - | chr7_1:17417236-17417255 | None:intergenic | 15.0% |
!! | AAAAAACTAACATAAATGTT+GGG | + | chr7_1:17417416-17417435 | Msa1012340:intron | 15.0% |
!! | ATTAATCAATAGCTTAATCA+AGG | + | chr7_1:17412990-17413009 | Msa1012340:intron | 20.0% |
!!! | TATTTTTTTTTGTGTAAACC+TGG | - | chr7_1:17413318-17413337 | None:intergenic | 20.0% |
!! | ACAAAAAAAAATAGTCTCTT+TGG | + | chr7_1:17413325-17413344 | Msa1012340:intron | 20.0% |
!! | AAATCCAAAGATTATAATGA+TGG | - | chr7_1:17413370-17413389 | None:intergenic | 20.0% |
!!! | TAAACAAACTGATTTATGTT+TGG | + | chr7_1:17414084-17414103 | Msa1012340:intron | 20.0% |
!! | ACTAAAATAGACATAACTAA+AGG | + | chr7_1:17414143-17414162 | Msa1012340:intron | 20.0% |
!! | CTATTTCATATACTATAGTA+GGG | - | chr7_1:17414457-17414476 | None:intergenic | 20.0% |
!! | TCTATTTCATATACTATAGT+AGG | - | chr7_1:17414458-17414477 | None:intergenic | 20.0% |
!!! | TTTGATGTATTTTATGTGTT+TGG | + | chr7_1:17414482-17414501 | Msa1012340:intron | 20.0% |
!! | GTATATTATTACATTTGAGA+AGG | + | chr7_1:17414776-17414795 | Msa1012340:intron | 20.0% |
!! | AATGATTCTAAACTAGTAAA+GGG | - | chr7_1:17415126-17415145 | None:intergenic | 20.0% |
!! | TATAACTTTCAATTTATGTG+TGG | + | chr7_1:17415150-17415169 | Msa1012340:intron | 20.0% |
!! | ATGACATACTTCATTATTAT+AGG | + | chr7_1:17415178-17415197 | Msa1012340:intron | 20.0% |
!! | TATAACTTTCAATTTATGTG+TGG | + | chr7_1:17415150-17415169 | Msa1012340:intron | 20.0% |
!! | ATGACATACTTCATTATTAT+AGG | + | chr7_1:17415178-17415197 | Msa1012340:intron | 20.0% |
!! | CAGTATTATATTTCCAATTT+AGG | + | chr7_1:17415408-17415427 | Msa1012340:CDS | 20.0% |
!! | TTAACCATTATAGGATATAT+AGG | - | chr7_1:17415522-17415541 | None:intergenic | 20.0% |
!! | TCTAAACAATTAACCATTAT+AGG | - | chr7_1:17415531-17415550 | None:intergenic | 20.0% |
!! | TCTAATAGAAAATTTATACC+CGG | + | chr7_1:17416176-17416195 | Msa1012340:intron | 20.0% |
!! | TTCAATTTAAATTACCTTGA+AGG | - | chr7_1:17416413-17416432 | None:intergenic | 20.0% |
!! | AACTTTCTTAAATCAAACAA+TGG | - | chr7_1:17417296-17417315 | None:intergenic | 20.0% |
!! | GAAAAAACTAACATAAATGT+TGG | + | chr7_1:17417415-17417434 | Msa1012340:intron | 20.0% |
!!! | AAATTCGACAACTTTTTAAA+TGG | + | chr7_1:17417494-17417513 | Msa1012340:intron | 20.0% |
!! | TATGCAAAACTAAATAATAG+TGG | - | chr7_1:17418281-17418300 | None:intergenic | 20.0% |
!!! | TACTTTTTTTTTTTTTGTGG+TGG | + | chr7_1:17418307-17418326 | Msa1012340:intron | 20.0% |
!! | AACTTTGAAAATTGAACACA+CGG | - | chr7_1:17412567-17412586 | None:intergenic | 25.0% |
! | ATTAATCAATAGCTTAACCA+AGG | + | chr7_1:17413171-17413190 | Msa1012340:intron | 25.0% |
! | AATTGTAACACATTTCTCAA+AGG | + | chr7_1:17413710-17413729 | Msa1012340:intron | 25.0% |
!!! | TTGTTTATTTCTGTTGTTAG+AGG | + | chr7_1:17413739-17413758 | Msa1012340:intron | 25.0% |
!! | TGAGAGAATTGATTTATGTT+TGG | + | chr7_1:17414040-17414059 | Msa1012340:intron | 25.0% |
! | TAAAGGAGAATTGATAAAGA+AGG | + | chr7_1:17414160-17414179 | Msa1012340:intron | 25.0% |
! | TAAAGAAGGAGAATTGATAA+AGG | + | chr7_1:17414174-17414193 | Msa1012340:intron | 25.0% |
! | AAAGAAGGAGAATTGATAAA+GGG | + | chr7_1:17414175-17414194 | Msa1012340:intron | 25.0% |
!!! | TTTTTGGCTAGAATTGATTT+TGG | + | chr7_1:17414350-17414369 | Msa1012340:intron | 25.0% |
!! | AAAATGATCTCTCCTTTTAA+AGG | - | chr7_1:17414609-17414628 | None:intergenic | 25.0% |
! | TTTACCAATTTGCAAAATTC+AGG | + | chr7_1:17414658-17414677 | Msa1012340:intron | 25.0% |
!! | TAATCCTGAATTTTGCAAAT+TGG | - | chr7_1:17414665-17414684 | None:intergenic | 25.0% |
! | GAAATTACAGTAACTTATCT+TGG | + | chr7_1:17414739-17414758 | Msa1012340:intron | 25.0% |
! | TATTGTAATGTTTAGTGTTG+TGG | + | chr7_1:17414862-17414881 | Msa1012340:intron | 25.0% |
! | ATTGTAATGTTTAGTGTTGT+GGG | + | chr7_1:17414863-17414882 | Msa1012340:intron | 25.0% |
!!! | ATTAAGACGGATTTTATACT+TGG | + | chr7_1:17414912-17414931 | Msa1012340:intron | 25.0% |
! | ATACATGACAGAACAATTTA+AGG | - | chr7_1:17415032-17415051 | None:intergenic | 25.0% |
! | GAATGATTCTAAACTAGTAA+AGG | - | chr7_1:17415127-17415146 | None:intergenic | 25.0% |
! | GTTATGTTCATATACTCTTA+TGG | + | chr7_1:17415266-17415285 | Msa1012340:intron | 25.0% |
! | CTTTCCTATATATCCTATAA+TGG | + | chr7_1:17415515-17415534 | Msa1012340:intron | 25.0% |
! | ACTCAATTATCGAAGAATTA+AGG | - | chr7_1:17415831-17415850 | None:intergenic | 25.0% |
! | AATTGTGATCTTTACTACAT+TGG | - | chr7_1:17415900-17415919 | None:intergenic | 25.0% |
! | CTAATAGAAAATTTATACCC+GGG | + | chr7_1:17416177-17416196 | Msa1012340:intron | 25.0% |
! | TAATAGAAAATTTATACCCG+GGG | + | chr7_1:17416178-17416197 | Msa1012340:intron | 25.0% |
! | ATCATTAAATATGACTACAC+TGG | + | chr7_1:17416316-17416335 | Msa1012340:intron | 25.0% |
!!! | TTTTTATTAGTGGACTAGTT+TGG | + | chr7_1:17416359-17416378 | Msa1012340:intron | 25.0% |
! | ATCATGAAAAGAATGATTCA+AGG | - | chr7_1:17416613-17416632 | None:intergenic | 25.0% |
!!! | TTTTTGAGTCAAATTGCAAT+AGG | - | chr7_1:17416641-17416660 | None:intergenic | 25.0% |
!! | ATAACTTTGTAAGTTGAGTT+AGG | + | chr7_1:17416732-17416751 | Msa1012340:intron | 25.0% |
! | GAGATGATATAAAGTAAGAA+TGG | + | chr7_1:17417079-17417098 | Msa1012340:intron | 25.0% |
! | AACTAATGAAAGAAAGTTCA+CGG | + | chr7_1:17417267-17417286 | Msa1012340:CDS | 25.0% |
! | GGTTAATTAAGTGTTAGATT+CGG | + | chr7_1:17417537-17417556 | Msa1012340:intron | 25.0% |
! | GTTAATCATGTGCAAATTTA+AGG | - | chr7_1:17417615-17417634 | None:intergenic | 25.0% |
! | ACTAGATCATAAACCAATTT+GGG | - | chr7_1:17417688-17417707 | None:intergenic | 25.0% |
! | AACTAGATCATAAACCAATT+TGG | - | chr7_1:17417689-17417708 | None:intergenic | 25.0% |
! | ATCCTATAAATCAACAAATG+CGG | - | chr7_1:17417945-17417964 | None:intergenic | 25.0% |
! | AGAATATCACATTTCCTATT+TGG | - | chr7_1:17418239-17418258 | None:intergenic | 25.0% |
! | CAAAACTAAATAATAGTGGT+CGG | - | chr7_1:17418277-17418296 | None:intergenic | 25.0% |
TAACCAGATTGAGAAAAGAA+AGG | - | chr7_1:17412848-17412867 | None:intergenic | 30.0% | |
TAAGAGTTTGAACACAATAC+TGG | - | chr7_1:17413036-17413055 | None:intergenic | 30.0% | |
AGTATTGTGTTCAAACTCTT+AGG | + | chr7_1:17413035-17413054 | Msa1012340:intron | 30.0% | |
GTATTGTGTTCAAACTCTTA+GGG | + | chr7_1:17413036-17413055 | Msa1012340:intron | 30.0% | |
GACACCATCATTATAATCTT+TGG | + | chr7_1:17413363-17413382 | Msa1012340:intron | 30.0% | |
ATGAGATGTTGAATGTTTGT+AGG | + | chr7_1:17413628-17413647 | Msa1012340:intron | 30.0% | |
TGAGATGTTGAATGTTTGTA+GGG | + | chr7_1:17413629-17413648 | Msa1012340:intron | 30.0% | |
AGTGGCATATGAAATTTATG+AGG | + | chr7_1:17413915-17413934 | Msa1012340:intron | 30.0% | |
GAATTGATAAAGGGCAATAA+AGG | + | chr7_1:17414184-17414203 | Msa1012340:intron | 30.0% | |
GGGCAATAAAGGAAAATAAT+AGG | + | chr7_1:17414195-17414214 | Msa1012340:intron | 30.0% | |
CAAAAACAACATGTTTGGTT+TGG | - | chr7_1:17414336-17414355 | None:intergenic | 30.0% | |
!!! | CAAACCAAACATGTTGTTTT+TGG | + | chr7_1:17414334-17414353 | Msa1012340:intron | 30.0% |
! | GCACTGTTTATAATTGCTTT+TGG | + | chr7_1:17414372-17414391 | Msa1012340:intron | 30.0% |
! | ATGTTTCTACACTTTAGAGA+CGG | - | chr7_1:17414424-17414443 | None:intergenic | 30.0% |
! | GATGTATTTTATGTGTTTGG+AGG | + | chr7_1:17414485-17414504 | Msa1012340:intron | 30.0% |
ACTGATGCATTACAATGTTA+AGG | + | chr7_1:17414630-17414649 | Msa1012340:intron | 30.0% | |
ATTTGAGAAGGAAAAATGTC+AGG | + | chr7_1:17414788-17414807 | Msa1012340:intron | 30.0% | |
ATATGTTATTGACATGCCAT+AGG | + | chr7_1:17414819-17414838 | Msa1012340:intron | 30.0% | |
CAATACATTGAACACAAACA+TGG | - | chr7_1:17414847-17414866 | None:intergenic | 30.0% | |
AAATCCGTCTTAATGTGTTA+GGG | - | chr7_1:17414906-17414925 | None:intergenic | 30.0% | |
AAAATCCGTCTTAATGTGTT+AGG | - | chr7_1:17414907-17414926 | None:intergenic | 30.0% | |
AAAAATGCAGATGACAATGA+TGG | - | chr7_1:17414954-17414973 | None:intergenic | 30.0% | |
CATATAGCATCAGATGAAAA+TGG | - | chr7_1:17415555-17415574 | None:intergenic | 30.0% | |
! | TTTTCATCTGATGCTATATG+TGG | + | chr7_1:17415555-17415574 | Msa1012340:intron | 30.0% |
TTTCATCTGATGCTATATGT+GGG | + | chr7_1:17415556-17415575 | Msa1012340:intron | 30.0% | |
AATGAGATATTCAACTCCAA+GGG | - | chr7_1:17415622-17415641 | None:intergenic | 30.0% | |
AAATGAGATATTCAACTCCA+AGG | - | chr7_1:17415623-17415642 | None:intergenic | 30.0% | |
TAGAAAAAGAAAACCCCTTA+TGG | + | chr7_1:17415677-17415696 | Msa1012340:intron | 30.0% | |
GGAAACCATAATTTCTCTAT+TGG | + | chr7_1:17415756-17415775 | Msa1012340:intron | 30.0% | |
!! | AATTGAGTTGACTATCTTTG+TGG | + | chr7_1:17415843-17415862 | Msa1012340:intron | 30.0% |
! | TGTATGTGAGTTTTCATTTC+TGG | + | chr7_1:17416121-17416140 | Msa1012340:intron | 30.0% |
! | GAATTTTCTGTATAGTGTGA+TGG | + | chr7_1:17416430-17416449 | Msa1012340:intron | 30.0% |
GCATATAAGAAGACGAATAA+AGG | - | chr7_1:17416458-17416477 | None:intergenic | 30.0% | |
TATTTCACAGCATATCATGT+GGG | - | chr7_1:17416715-17416734 | None:intergenic | 30.0% | |
TTATTTCACAGCATATCATG+TGG | - | chr7_1:17416716-17416735 | None:intergenic | 30.0% | |
!!! | CAATTTTTTAGCGAATGACT+AGG | - | chr7_1:17417028-17417047 | None:intergenic | 30.0% |
ACTAGAACTTATCGATGTTA+AGG | + | chr7_1:17417057-17417076 | Msa1012340:intron | 30.0% | |
!!! | TCATCGTCGATTATTTTTGT+TGG | + | chr7_1:17417184-17417203 | Msa1012340:intron | 30.0% |
!!! | TTGGTTTTGAAGCTTTTTGA+AGG | + | chr7_1:17417203-17417222 | Msa1012340:intron | 30.0% |
TTAACAGAAAAATTCAGGCT+CGG | - | chr7_1:17417231-17417250 | None:intergenic | 30.0% | |
! | GATTCGGTTAATAGATATAC+CGG | + | chr7_1:17417553-17417572 | Msa1012340:intron | 30.0% |
ATTCGGTTAATAGATATACC+GGG | + | chr7_1:17417554-17417573 | Msa1012340:intron | 30.0% | |
GGTTAATGAAGTTTAGTAGA+TGG | - | chr7_1:17417594-17417613 | None:intergenic | 30.0% | |
TATTGACAGAGAAGATAACT+AGG | - | chr7_1:17417866-17417885 | None:intergenic | 30.0% | |
!! | TACCGCATTTGTTGATTTAT+AGG | + | chr7_1:17417940-17417959 | Msa1012340:intron | 30.0% |
AGTTATTCTTTCATGGCTAA+AGG | + | chr7_1:17418072-17418091 | Msa1012340:CDS | 30.0% | |
GTTATTCTTTCATGGCTAAA+GGG | + | chr7_1:17418073-17418092 | Msa1012340:CDS | 30.0% | |
!!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr7_1:17418311-17418330 | Msa1012340:intron | 30.0% |
GACAATGCATAATATATGCA+AGG | - | chr7_1:17418352-17418371 | None:intergenic | 30.0% | |
AAATCCCAAAAGTAGTACTT+TGG | - | chr7_1:17418469-17418488 | None:intergenic | 30.0% | |
CATTCTTCTTCTTCTTCTTC+TGG | - | chr7_1:17412742-17412761 | None:intergenic | 35.0% | |
! | TTGCCTTTCTTTTCTCAATC+TGG | + | chr7_1:17412842-17412861 | Msa1012340:CDS | 35.0% |
TGTTATGCTCTTTCTTTGCT+TGG | + | chr7_1:17412872-17412891 | Msa1012340:CDS | 35.0% | |
ACATACTCAAATGTCTCTTC+AGG | + | chr7_1:17413405-17413424 | Msa1012340:intron | 35.0% | |
CATACTCAAATGTCTCTTCA+GGG | + | chr7_1:17413406-17413425 | Msa1012340:intron | 35.0% | |
AGTGATGTGATAGATGTGAT+CGG | + | chr7_1:17413569-17413588 | Msa1012340:intron | 35.0% | |
GAGATGTTGAATGTTTGTAG+GGG | + | chr7_1:17413630-17413649 | Msa1012340:intron | 35.0% | |
AATGTTTGTAGGGGAGTAAA+GGG | + | chr7_1:17413639-17413658 | Msa1012340:intron | 35.0% | |
TTCATTACAAGAGACTCAAG+TGG | + | chr7_1:17413897-17413916 | Msa1012340:intron | 35.0% | |
! | TTCTAGAAAAGCTAGAAGCT+AGG | + | chr7_1:17414257-17414276 | Msa1012340:intron | 35.0% |
CTAGCCAAAAACAACATGTT+TGG | - | chr7_1:17414341-17414360 | None:intergenic | 35.0% | |
! | TGTTTCTACACTTTAGAGAC+GGG | - | chr7_1:17414423-17414442 | None:intergenic | 35.0% |
TATACTATAGTAGGGACAAC+TGG | - | chr7_1:17414449-17414468 | None:intergenic | 35.0% | |
TGGCACATTAAATGAACATG+TGG | - | chr7_1:17414578-17414597 | None:intergenic | 35.0% | |
AAGTGATGAACCAGAAGATT+CGG | + | chr7_1:17415070-17415089 | Msa1012340:CDS | 35.0% | |
TTCTAAACTAGTAAAGGGAG+AGG | - | chr7_1:17415121-17415140 | None:intergenic | 35.0% | |
! | GAGCTTGTCATTTCCTAAAT+TGG | - | chr7_1:17415424-17415443 | None:intergenic | 35.0% |
TTAGGAAATGACAAGCTCAA+AGG | + | chr7_1:17415426-17415445 | Msa1012340:CDS | 35.0% | |
GCACTCGTTTGTTTGAAAAT+TGG | + | chr7_1:17415474-17415493 | Msa1012340:intron | 35.0% | |
TTGGATCTGGTATACCATAA+GGG | - | chr7_1:17415694-17415713 | None:intergenic | 35.0% | |
GCACTCCAATAGAGAAATTA+TGG | - | chr7_1:17415764-17415783 | None:intergenic | 35.0% | |
!! | TACCAAATAGTGGATTGAAC+AGG | - | chr7_1:17416482-17416501 | None:intergenic | 35.0% |
TGTTCAATCCACTATTTGGT+AGG | + | chr7_1:17416481-17416500 | Msa1012340:intron | 35.0% | |
TGGAGGATCATGTTGTTAAA+AGG | + | chr7_1:17416579-17416598 | Msa1012340:CDS | 35.0% | |
! | GTTGCTTTGTGAAACATTGA+TGG | + | chr7_1:17416664-17416683 | Msa1012340:intron | 35.0% |
! | AAACATTGATGGTAGTCACT+AGG | + | chr7_1:17416675-17416694 | Msa1012340:intron | 35.0% |
CCGATACCATCTGAAAATTT+GGG | - | chr7_1:17416783-17416802 | None:intergenic | 35.0% | |
! | CCCAAATTTTCAGATGGTAT+CGG | + | chr7_1:17416780-17416799 | Msa1012340:intron | 35.0% |
TCCGATACCATCTGAAAATT+TGG | - | chr7_1:17416784-17416803 | None:intergenic | 35.0% | |
! | TATTTTCAGACCAGATCATG+TGG | - | chr7_1:17416901-17416920 | None:intergenic | 35.0% |
AATGGAAGACATTTAGCAGT+GGG | + | chr7_1:17417097-17417116 | Msa1012340:intron | 35.0% | |
TCGACGATGAAAACATATCA+TGG | - | chr7_1:17417174-17417193 | None:intergenic | 35.0% | |
CCAAAACAAGAACTTCAACA+GGG | - | chr7_1:17417355-17417374 | None:intergenic | 35.0% | |
!!! | CCTGTTGAAGTTCTTGTTTT+GGG | + | chr7_1:17417353-17417372 | Msa1012340:intron | 35.0% |
CATTGTGGTAAGCTCTATAA+TGG | + | chr7_1:17417391-17417410 | Msa1012340:intron | 35.0% | |
! | ATGGTTAATAAGTTGACACC+CGG | - | chr7_1:17417575-17417594 | None:intergenic | 35.0% |
AAACTTGACAACTTCTTACG+TGG | - | chr7_1:17417659-17417678 | None:intergenic | 35.0% | |
CGTAAGAAGTTGTCAAGTTT+AGG | + | chr7_1:17417659-17417678 | Msa1012340:intron | 35.0% | |
GAGCACTTTCTACTTCTAAT+AGG | - | chr7_1:17417717-17417736 | None:intergenic | 35.0% | |
ATTGAATGACTTTGCTTCGT+CGG | + | chr7_1:17417775-17417794 | Msa1012340:intron | 35.0% | |
CAAATGCGGTAAACTACATT+AGG | - | chr7_1:17417931-17417950 | None:intergenic | 35.0% | |
! | GTTGATTTATAGGATGCAGA+AGG | + | chr7_1:17417950-17417969 | Msa1012340:intron | 35.0% |
! | AAAGAAACCGCACAGTTTTA+TGG | + | chr7_1:17417977-17417996 | Msa1012340:CDS | 35.0% |
TGACAAACCATAAAACTGTG+CGG | - | chr7_1:17417987-17418006 | None:intergenic | 35.0% | |
GTGCAGAAGTTATTCTTTCA+TGG | + | chr7_1:17418065-17418084 | Msa1012340:CDS | 35.0% | |
AAAGTAGCAGAGGAAATGTT+TGG | + | chr7_1:17418117-17418136 | Msa1012340:three_prime_UTR | 35.0% | |
GCAATCACTGCTAACAAAAT+GGG | - | chr7_1:17418152-17418171 | None:intergenic | 35.0% | |
AGCAATCACTGCTAACAAAA+TGG | - | chr7_1:17418153-17418172 | None:intergenic | 35.0% | |
TTTCACCAAGCTTCAAACTT+AGG | + | chr7_1:17418199-17418218 | Msa1012340:three_prime_UTR | 35.0% | |
! | TATTGCCTAAGTTTGAAGCT+TGG | - | chr7_1:17418207-17418226 | None:intergenic | 35.0% |
!!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr7_1:17418312-17418331 | Msa1012340:intron | 35.0% |
CATAATATATGCAAGGTCCA+GGG | - | chr7_1:17418345-17418364 | None:intergenic | 35.0% | |
!! | TGTGTCCAAAGTACTACTTT+TGG | + | chr7_1:17418461-17418480 | Msa1012340:three_prime_UTR | 35.0% |
!! | GTGTCCAAAGTACTACTTTT+GGG | + | chr7_1:17418462-17418481 | Msa1012340:three_prime_UTR | 35.0% |
GATGAAGCAACAGTGAGTAA+TGG | + | chr7_1:17412523-17412542 | Msa1012340:exon | 40.0% | |
TGAGTAATGGCAATGACAGT+GGG | + | chr7_1:17412536-17412555 | Msa1012340:exon | 40.0% | |
AGTAGCAGTATTGCAGAGAA+AGG | + | chr7_1:17412628-17412647 | Msa1012340:CDS | 40.0% | |
TCCCTTACAATCTGAAGGAA+GGG | + | chr7_1:17412663-17412682 | Msa1012340:CDS | 40.0% | |
! | ATTTTCCATGAGCTTCCTTC+TGG | + | chr7_1:17412695-17412714 | Msa1012340:CDS | 40.0% |
ACTTCCATGTTCAAACCAGA+AGG | - | chr7_1:17412713-17412732 | None:intergenic | 40.0% | |
CCATGAACAAATACCAAAGC+TGG | - | chr7_1:17412785-17412804 | None:intergenic | 40.0% | |
! | CCAGCTTTGGTATTTGTTCA+TGG | + | chr7_1:17412782-17412801 | Msa1012340:CDS | 40.0% |
ATGGAAGTTATCATGCTGCT+TGG | + | chr7_1:17412801-17412820 | Msa1012340:CDS | 40.0% | |
!! | TTATCATGCTGCTTGGTGTT+GGG | + | chr7_1:17412808-17412827 | Msa1012340:CDS | 40.0% |
TGCAGCAGTGTTAAAACTCT+TGG | + | chr7_1:17413219-17413238 | Msa1012340:intron | 40.0% | |
GCAGCAGTGTTAAAACTCTT+GGG | + | chr7_1:17413220-17413239 | Msa1012340:intron | 40.0% | |
CAGCAGTGTTAAAACTCTTG+GGG | + | chr7_1:17413221-17413240 | Msa1012340:intron | 40.0% | |
TGAGAATGCTACACACATTG+AGG | + | chr7_1:17413436-17413455 | Msa1012340:intron | 40.0% | |
GAGAATGCTACACACATTGA+GGG | + | chr7_1:17413437-17413456 | Msa1012340:intron | 40.0% | |
TATCACATCACTCTCTCTCA+AGG | - | chr7_1:17413561-17413580 | None:intergenic | 40.0% | |
GAATGTTTGTAGGGGAGTAA+AGG | + | chr7_1:17413638-17413657 | Msa1012340:intron | 40.0% | |
ACGAAACACGTATACGATGT+AGG | + | chr7_1:17413797-17413816 | Msa1012340:intron | 40.0% | |
AGCTAGGATTTGTAGCTTCA+TGG | + | chr7_1:17414273-17414292 | Msa1012340:intron | 40.0% | |
! | GCTTCATGGAGAATTGCTTT+TGG | + | chr7_1:17414287-17414306 | Msa1012340:intron | 40.0% |
!! | TCATGGAGAATTGCTTTTGG+AGG | + | chr7_1:17414290-17414309 | Msa1012340:intron | 40.0% |
TGATGTGAGATTCACGTAGA+AGG | + | chr7_1:17414552-17414571 | Msa1012340:intron | 40.0% | |
!! | TCCTTTTAAAGGCTACGATG+TGG | - | chr7_1:17414598-17414617 | None:intergenic | 40.0% |
AGAAGGAAAAATGTCAGGAG+AGG | + | chr7_1:17414793-17414812 | Msa1012340:intron | 40.0% | |
GAAGGAAAAATGTCAGGAGA+GGG | + | chr7_1:17414794-17414813 | Msa1012340:intron | 40.0% | |
AAGGAAAAATGTCAGGAGAG+GGG | + | chr7_1:17414795-17414814 | Msa1012340:intron | 40.0% | |
TGTTTAGTGTTGTGGGATTG+TGG | + | chr7_1:17414870-17414889 | Msa1012340:intron | 40.0% | |
GCATCCCTAACACATTAAGA+CGG | + | chr7_1:17414899-17414918 | Msa1012340:intron | 40.0% | |
AATGCAGATGACAATGATGG+TGG | - | chr7_1:17414951-17414970 | None:intergenic | 40.0% | |
TCATGTATTCTACATGCGCA+GGG | + | chr7_1:17415044-17415063 | Msa1012340:intron | 40.0% | |
AATGAATGTCCGAGCAAGAT+GGG | - | chr7_1:17415372-17415391 | None:intergenic | 40.0% | |
AAATGAATGTCCGAGCAAGA+TGG | - | chr7_1:17415373-17415392 | None:intergenic | 40.0% | |
ATCTTGCTCGGACATTCATT+TGG | + | chr7_1:17415372-17415391 | Msa1012340:CDS | 40.0% | |
!! | TCAAAGGTACTTCCTGATTC+TGG | + | chr7_1:17415442-17415461 | Msa1012340:intron | 40.0% |
TGCATGAATAAGCCAGAATC+AGG | - | chr7_1:17415457-17415476 | None:intergenic | 40.0% | |
TGGATCTGGTATACCATAAG+GGG | - | chr7_1:17415693-17415712 | None:intergenic | 40.0% | |
GTTGGATCTGGTATACCATA+AGG | - | chr7_1:17415695-17415714 | None:intergenic | 40.0% | |
ATGGTATACCAGATCCAACT+CGG | + | chr7_1:17415696-17415715 | Msa1012340:intron | 40.0% | |
TTTGTCCATCTGTCTGATGA+AGG | + | chr7_1:17415787-17415806 | Msa1012340:intron | 40.0% | |
TTGTCCATCTGTCTGATGAA+GGG | + | chr7_1:17415788-17415807 | Msa1012340:intron | 40.0% | |
TGCATGCACGTTAGATCATA+GGG | - | chr7_1:17415962-17415981 | None:intergenic | 40.0% | |
ATCTAACGTGCATGCAGAAT+TGG | + | chr7_1:17415966-17415985 | Msa1012340:intron | 40.0% | |
! | AAGGAGGTACAGAACAAACA+AGG | - | chr7_1:17416218-17416237 | None:intergenic | 40.0% |
GTTGGTTACCTATTACCAGA+AGG | - | chr7_1:17416237-17416256 | None:intergenic | 40.0% | |
ATTACCTTGAAGGCAGCAAT+TGG | - | chr7_1:17416403-17416422 | None:intergenic | 40.0% | |
CACCTGTTCAATCCACTATT+TGG | + | chr7_1:17416477-17416496 | Msa1012340:intron | 40.0% | |
GTATGTCACCTACCAAATAG+TGG | - | chr7_1:17416492-17416511 | None:intergenic | 40.0% | |
AAGCTCTCTTTCTCTTTGCA+AGG | + | chr7_1:17416535-17416554 | Msa1012340:CDS | 40.0% | |
! | GACATTTTTCTCACCCACAA+TGG | + | chr7_1:17416559-17416578 | Msa1012340:CDS | 40.0% |
! | ATTTTTCTCACCCACAATGG+AGG | + | chr7_1:17416562-17416581 | Msa1012340:CDS | 40.0% |
ACAACATGATCCTCCATTGT+GGG | - | chr7_1:17416575-17416594 | None:intergenic | 40.0% | |
AACAACATGATCCTCCATTG+TGG | - | chr7_1:17416576-17416595 | None:intergenic | 40.0% | |
! | CTTTGTAAGTTGAGTTAGGC+CGG | + | chr7_1:17416736-17416755 | Msa1012340:intron | 40.0% |
ATCGGAGTCTATTCAAGATC+CGG | + | chr7_1:17416798-17416817 | Msa1012340:intron | 40.0% | |
AAGCTCAAGATATCTAGTCC+TGG | + | chr7_1:17416850-17416869 | Msa1012340:intron | 40.0% | |
AGCTCAAGATATCTAGTCCT+GGG | + | chr7_1:17416851-17416870 | Msa1012340:intron | 40.0% | |
AAAACTGACGTGTAAGGTGA+GGG | - | chr7_1:17416944-17416963 | None:intergenic | 40.0% | |
GAATGGAAGACATTTAGCAG+TGG | + | chr7_1:17417096-17417115 | Msa1012340:intron | 40.0% | |
ATGGAAGACATTTAGCAGTG+GGG | + | chr7_1:17417098-17417117 | Msa1012340:intron | 40.0% | |
!!! | AATGGAAGGTTTTGGTGTCA+TGG | + | chr7_1:17417125-17417144 | Msa1012340:intron | 40.0% |
!!! | AAGGTTTTGGTGTCATGGAT+TGG | + | chr7_1:17417130-17417149 | Msa1012340:intron | 40.0% |
AGAACTTCAACAGGGAGATT+TGG | - | chr7_1:17417347-17417366 | None:intergenic | 40.0% | |
!! | CCCTGTTGAAGTTCTTGTTT+TGG | + | chr7_1:17417352-17417371 | Msa1012340:intron | 40.0% |
CCCAAAACAAGAACTTCAAC+AGG | - | chr7_1:17417356-17417375 | None:intergenic | 40.0% | |
CGCAAAGAATGACTTCATTG+TGG | + | chr7_1:17417376-17417395 | Msa1012340:intron | 40.0% | |
CAAGTTTAGGTGTCCCAAAT+TGG | + | chr7_1:17417672-17417691 | Msa1012340:intron | 40.0% | |
AAACTGAATTCCTATCCGCT+AGG | - | chr7_1:17417748-17417767 | None:intergenic | 40.0% | |
AAGCACTTCATTCTCATCCT+TGG | - | chr7_1:17417807-17417826 | None:intergenic | 40.0% | |
TTGTCACCAGTTTGTGTTGA+AGG | + | chr7_1:17418001-17418020 | Msa1012340:CDS | 40.0% | |
ACTTGCTCATGACATGATGT+TGG | + | chr7_1:17418024-17418043 | Msa1012340:CDS | 40.0% | |
GCTAAAGGGTTTACACAAGT+AGG | + | chr7_1:17418087-17418106 | Msa1012340:CDS | 40.0% | |
AGGAAGAAAGAAAGTAGCAG+AGG | + | chr7_1:17418107-17418126 | Msa1012340:exon | 40.0% | |
GCTTCAAACTTAGGCAATAG+AGG | + | chr7_1:17418208-17418227 | Msa1012340:three_prime_UTR | 40.0% | |
TCAAACTTAGGCAATAGAGG+AGG | + | chr7_1:17418211-17418230 | Msa1012340:three_prime_UTR | 40.0% | |
CAAACTTAGGCAATAGAGGA+GGG | + | chr7_1:17418212-17418231 | Msa1012340:three_prime_UTR | 40.0% | |
GCATAATATATGCAAGGTCC+AGG | - | chr7_1:17418346-17418365 | None:intergenic | 40.0% | |
!!! | CTACTTTTGGGATTTCTAGC+TGG | + | chr7_1:17418474-17418493 | Msa1012340:three_prime_UTR | 40.0% |
GCAATGGAAACAAGAAGACA+AGG | - | chr7_1:17418504-17418523 | None:intergenic | 40.0% | |
GTGAGTAATGGCAATGACAG+TGG | + | chr7_1:17412535-17412554 | Msa1012340:exon | 45.0% | |
GAGTGTCCCTTACAATCTGA+AGG | + | chr7_1:17412658-17412677 | Msa1012340:CDS | 45.0% | |
GTCCCTTACAATCTGAAGGA+AGG | + | chr7_1:17412662-17412681 | Msa1012340:CDS | 45.0% | |
GCCCTTCCTTCAGATTGTAA+GGG | - | chr7_1:17412667-17412686 | None:intergenic | 45.0% | |
TGCCCTTCCTTCAGATTGTA+AGG | - | chr7_1:17412668-17412687 | None:intergenic | 45.0% | |
TCAAACCAGAAGGAAGCTCA+TGG | - | chr7_1:17412703-17412722 | None:intergenic | 45.0% | |
!! | GCTTCCTTCTGGTTTGAACA+TGG | + | chr7_1:17412706-17412725 | Msa1012340:CDS | 45.0% |
AAGTGAGTGTTCACCAGCTT+TGG | + | chr7_1:17412769-17412788 | Msa1012340:CDS | 45.0% | |
!! | GTTATCATGCTGCTTGGTGT+TGG | + | chr7_1:17412807-17412826 | Msa1012340:CDS | 45.0% |
TGCTCTTTCTTTGCTTGGAC+AGG | + | chr7_1:17412877-17412896 | Msa1012340:CDS | 45.0% | |
TCAAGGTCCTAGTTCGAACT+TGG | + | chr7_1:17413007-17413026 | Msa1012340:intron | 45.0% | |
CTGGATTCCAAGTTCGAACT+AGG | - | chr7_1:17413017-17413036 | None:intergenic | 45.0% | |
CAATAGCTTAACCAAGGTCC+TGG | + | chr7_1:17413177-17413196 | Msa1012340:intron | 45.0% | |
! | GAGCCTTATGAGACCCAAAT+GGG | - | chr7_1:17413258-17413277 | None:intergenic | 45.0% |
!! | GATGTGATCGGTTGATGATG+TGG | + | chr7_1:17413581-17413600 | Msa1012340:intron | 45.0% |
!! | TGATCGGTTGATGATGTGGT+TGG | + | chr7_1:17413585-17413604 | Msa1012340:intron | 45.0% |
ACACGTATACGATGTAGGTG+TGG | + | chr7_1:17413802-17413821 | Msa1012340:intron | 45.0% | |
CACGTATACGATGTAGGTGT+GGG | + | chr7_1:17413803-17413822 | Msa1012340:intron | 45.0% | |
CACTCTTTCTCGTGTGTGTT+TGG | + | chr7_1:17413948-17413967 | Msa1012340:intron | 45.0% | |
AGCCAAAAGCTGAACCAAAC+AGG | + | chr7_1:17414397-17414416 | Msa1012340:intron | 45.0% | |
GCCACATCGTAGCCTTTAAA+AGG | + | chr7_1:17414594-17414613 | Msa1012340:intron | 45.0% | |
GAACACAAACATGGAGCCTA+TGG | - | chr7_1:17414838-17414857 | None:intergenic | 45.0% | |
GTCATGTATTCTACATGCGC+AGG | + | chr7_1:17415043-17415062 | Msa1012340:intron | 45.0% | |
CGTGTGTCTACTGTAGAACA+TGG | - | chr7_1:17415305-17415324 | None:intergenic | 45.0% | |
TTGCTCGGACATTCATTTGG+AGG | + | chr7_1:17415375-17415394 | Msa1012340:CDS | 45.0% | |
! | AACTACTTCCGAGTTGGATC+TGG | - | chr7_1:17415707-17415726 | None:intergenic | 45.0% |
GTGATGAACTACTTCCGAGT+TGG | - | chr7_1:17415713-17415732 | None:intergenic | 45.0% | |
GGAAGTAGTTCATCACCTGT+GGG | + | chr7_1:17415717-17415736 | Msa1012340:intron | 45.0% | |
TTCTCCCTTCATCAGACAGA+TGG | - | chr7_1:17415795-17415814 | None:intergenic | 45.0% | |
GACAAGTGAGATCGTCACAT+CGG | - | chr7_1:17415939-17415958 | None:intergenic | 45.0% | |
GCATGCACGTTAGATCATAG+GGG | - | chr7_1:17415961-17415980 | None:intergenic | 45.0% | |
CTGCATGCACGTTAGATCAT+AGG | - | chr7_1:17415963-17415982 | None:intergenic | 45.0% | |
TATTGTGTGATTGCAGCCTC+TGG | + | chr7_1:17416030-17416049 | Msa1012340:intron | 45.0% | |
ATTGTGTGATTGCAGCCTCT+GGG | + | chr7_1:17416031-17416050 | Msa1012340:intron | 45.0% | |
CAAACGAGTGTATGTCTGTG+TGG | - | chr7_1:17416074-17416093 | None:intergenic | 45.0% | |
AATTTATACCCGGGGCTTAG+AGG | + | chr7_1:17416186-17416205 | Msa1012340:CDS | 45.0% | |
GTTTGTTCTGTACCTCCTTC+TGG | + | chr7_1:17416219-17416238 | Msa1012340:CDS | 45.0% | |
CTGTACCTCCTTCTGGTAAT+AGG | + | chr7_1:17416226-17416245 | Msa1012340:CDS | 45.0% | |
GGTTACCTATTACCAGAAGG+AGG | - | chr7_1:17416234-17416253 | None:intergenic | 45.0% | |
GAAACCAATTGCTGCCTTCA+AGG | + | chr7_1:17416396-17416415 | Msa1012340:CDS | 45.0% | |
TTGGTAGGTGACATACAGCT+TGG | + | chr7_1:17416496-17416515 | Msa1012340:intron | 45.0% | |
ACATACAGCTTGGCTGCAAA+AGG | + | chr7_1:17416506-17416525 | Msa1012340:CDS | 45.0% | |
GCGTACTCACTCTACAAAAC+CGG | - | chr7_1:17416758-17416777 | None:intergenic | 45.0% | |
! | ACGCAGCCCAAATTTTCAGA+TGG | + | chr7_1:17416774-17416793 | Msa1012340:intron | 45.0% |
GAGTCTATTCAAGATCCGGT+TGG | + | chr7_1:17416802-17416821 | Msa1012340:intron | 45.0% | |
GCTACCACTATTAGGCCATT+CGG | + | chr7_1:17416824-17416843 | Msa1012340:intron | 45.0% | |
CTACCACTATTAGGCCATTC+GGG | + | chr7_1:17416825-17416844 | Msa1012340:intron | 45.0% | |
TATCTTGAGCTTGACCCGAA+TGG | - | chr7_1:17416842-17416861 | None:intergenic | 45.0% | |
TCAAGATATCTAGTCCTGGG+CGG | + | chr7_1:17416854-17416873 | Msa1012340:intron | 45.0% | |
AGTTCCACATCCACATGATC+TGG | + | chr7_1:17416888-17416907 | Msa1012340:intron | 45.0% | |
CAAAACTGACGTGTAAGGTG+AGG | - | chr7_1:17416945-17416964 | None:intergenic | 45.0% | |
CGCTACAAAACTGACGTGTA+AGG | - | chr7_1:17416950-17416969 | None:intergenic | 45.0% | |
ATTTAGCAGTGGGGCTAGAA+TGG | + | chr7_1:17417107-17417126 | Msa1012340:intron | 45.0% | |
!!! | GTTTTGGTGTCATGGATTGG+TGG | + | chr7_1:17417133-17417152 | Msa1012340:intron | 45.0% |
AGATTTGGCACCAAAGGAAC+TGG | - | chr7_1:17417332-17417351 | None:intergenic | 45.0% | |
GTTAGCGTATTTCACACACG+TGG | - | chr7_1:17417637-17417656 | None:intergenic | 45.0% | |
TCCTATCCGCTAGGATTCTA+GGG | - | chr7_1:17417739-17417758 | None:intergenic | 45.0% | |
TTCCTATCCGCTAGGATTCT+AGG | - | chr7_1:17417740-17417759 | None:intergenic | 45.0% | |
GCAAGTCCTTCAACACAAAC+TGG | - | chr7_1:17418010-17418029 | None:intergenic | 45.0% | |
ACATGATGTTGGACCCTTCA+TGG | + | chr7_1:17418035-17418054 | Msa1012340:CDS | 45.0% | |
CATGATGTTGGACCCTTCAT+GGG | + | chr7_1:17418036-17418055 | Msa1012340:CDS | 45.0% | |
CAATAGAGGAGGGTCCAAAT+AGG | + | chr7_1:17418222-17418241 | Msa1012340:three_prime_UTR | 45.0% | |
GTGAGCTTAGCTCAGTTGTA+GGG | - | chr7_1:17418374-17418393 | None:intergenic | 45.0% | |
! | AGGGAGATTTTGCGCCCATT+TGG | + | chr7_1:17413055-17413074 | Msa1012340:intron | 50.0% |
! | GGGAGATTTTGCGCCCATTT+GGG | + | chr7_1:17413056-17413075 | Msa1012340:intron | 50.0% |
! | CATTATCCCTCGAGCCTTGT+GGG | - | chr7_1:17413083-17413102 | None:intergenic | 50.0% |
TCCTGGTCGAATCCAGCTTT+GGG | + | chr7_1:17413194-17413213 | Msa1012340:intron | 50.0% | |
CCTTATGAGACCCAAATGGG+CGG | - | chr7_1:17413255-17413274 | None:intergenic | 50.0% | |
! | CGAGCCTTATGAGACCCAAA+TGG | - | chr7_1:17413259-17413278 | None:intergenic | 50.0% |
TTTGGGTCTCATAAGGCTCG+AGG | + | chr7_1:17413259-17413278 | Msa1012340:intron | 50.0% | |
TTGGGTCTCATAAGGCTCGA+GGG | + | chr7_1:17413260-17413279 | Msa1012340:intron | 50.0% | |
ATGTAGGTGTGGGTGCGATA+TGG | + | chr7_1:17413813-17413832 | Msa1012340:intron | 50.0% | |
GTGGGTGCGATATGGATACA+TGG | + | chr7_1:17413821-17413840 | Msa1012340:intron | 50.0% | |
!! | GGCCTGTTTGGTTCAGCTTT+TGG | - | chr7_1:17414402-17414421 | None:intergenic | 50.0% |
! | ACTTTAGAGACGGGCCTGTT+TGG | - | chr7_1:17414414-17414433 | None:intergenic | 50.0% |
! | GAACCAGAAGATTCGGTTGC+TGG | + | chr7_1:17415077-17415096 | Msa1012340:CDS | 50.0% |
GTACCAGCAACCGAATCTTC+TGG | - | chr7_1:17415083-17415102 | None:intergenic | 50.0% | |
TTCGGTTGCTGGTACACTTC+AGG | + | chr7_1:17415088-17415107 | Msa1012340:CDS | 50.0% | |
GACACACGCAACAGATGTTG+CGG | + | chr7_1:17415317-17415336 | Msa1012340:intron | 50.0% | |
CGGAAGTAGTTCATCACCTG+TGG | + | chr7_1:17415716-17415735 | Msa1012340:intron | 50.0% | |
AGTTCATCACCTGTGGGATC+TGG | + | chr7_1:17415723-17415742 | Msa1012340:intron | 50.0% | |
CACTATCAACCAGATCCCAC+AGG | - | chr7_1:17415735-17415754 | None:intergenic | 50.0% | |
!! | GTGGGATCTGGTTGATAGTG+AGG | + | chr7_1:17415735-17415754 | Msa1012340:intron | 50.0% |
TGTACAAGTTCGCGAGAAGC+TGG | + | chr7_1:17415873-17415892 | Msa1012340:intron | 50.0% | |
! | TCCGGTTGGCTACCACTATT+AGG | + | chr7_1:17416816-17416835 | Msa1012340:intron | 50.0% |
GCCTAATAGTGGTAGCCAAC+CGG | - | chr7_1:17416820-17416839 | None:intergenic | 50.0% | |
TGACCCGAATGGCCTAATAG+TGG | - | chr7_1:17416831-17416850 | None:intergenic | 50.0% | |
CAAGATATCTAGTCCTGGGC+GGG | + | chr7_1:17416855-17416874 | Msa1012340:intron | 50.0% | |
CAGACCAGATCATGTGGATG+TGG | - | chr7_1:17416895-17416914 | None:intergenic | 50.0% | |
! | GGGGCTAGAATGGAAGGTTT+TGG | + | chr7_1:17417117-17417136 | Msa1012340:intron | 50.0% |
TGCTTCGCTTCCAGTTCCTT+TGG | + | chr7_1:17417319-17417338 | Msa1012340:CDS | 50.0% | |
ACAGGGAGATTTGGCACCAA+AGG | - | chr7_1:17417338-17417357 | None:intergenic | 50.0% | |
GATCACGTAGTTCGCACAAG+TGG | + | chr7_1:17417516-17417535 | Msa1012340:intron | 50.0% | |
AGTGCTCCCTAGAATCCTAG+CGG | + | chr7_1:17417730-17417749 | Msa1012340:intron | 50.0% | |
! | TCCCTAGAATCCTAGCGGAT+AGG | + | chr7_1:17417735-17417754 | Msa1012340:intron | 50.0% |
TTGGACCCTTCATGGGAGAA+AGG | + | chr7_1:17418043-17418062 | Msa1012340:CDS | 50.0% | |
CTGCACCTTTCTCCCATGAA+GGG | - | chr7_1:17418051-17418070 | None:intergenic | 50.0% | |
TCTGCACCTTTCTCCCATGA+AGG | - | chr7_1:17418052-17418071 | None:intergenic | 50.0% | |
AAGGTCCAGGGTTCAAATCC+CGG | - | chr7_1:17418333-17418352 | None:intergenic | 50.0% | |
CGTGAGCTTAGCTCAGTTGT+AGG | - | chr7_1:17418375-17418394 | None:intergenic | 50.0% | |
!! | CTTGGTGTTGGGCTGAACAG+TGG | + | chr7_1:17412819-17412838 | Msa1012340:CDS | 55.0% |
! | GAGCCTTGTGGGACCCAAAT+GGG | - | chr7_1:17413072-17413091 | None:intergenic | 55.0% |
CCATTATCCCTCGAGCCTTG+TGG | - | chr7_1:17413084-17413103 | None:intergenic | 55.0% | |
CCACAAGGCTCGAGGGATAA+TGG | + | chr7_1:17413081-17413100 | Msa1012340:intron | 55.0% | |
GTCCTGGTCGAATCCAGCTT+TGG | + | chr7_1:17413193-17413212 | Msa1012340:intron | 55.0% | |
GGAGAGTTTGCCGCCCATTT+GGG | + | chr7_1:17413242-17413261 | Msa1012340:intron | 55.0% | |
CCGCCCATTTGGGTCTCATA+AGG | + | chr7_1:17413252-17413271 | Msa1012340:intron | 55.0% | |
CAATCGCCACCCATCTTGCT+CGG | + | chr7_1:17415360-17415379 | Msa1012340:CDS | 55.0% | |
GAATGTCCGAGCAAGATGGG+TGG | - | chr7_1:17415369-17415388 | None:intergenic | 55.0% | |
CACATGTACGCACACACCCT+TGG | + | chr7_1:17415603-17415622 | Msa1012340:intron | 55.0% | |
AGCAGTGGGGCTAGAATGGA+AGG | + | chr7_1:17417111-17417130 | Msa1012340:intron | 55.0% | |
! | CGAGCCTTGTGGGACCCAAA+TGG | - | chr7_1:17413073-17413092 | None:intergenic | 60.0% |
TTTGGGTCCCACAAGGCTCG+AGG | + | chr7_1:17413073-17413092 | Msa1012340:intron | 60.0% | |
TTGGGTCCCACAAGGCTCGA+GGG | + | chr7_1:17413074-17413093 | Msa1012340:intron | 60.0% | |
AGTCTTCGCAGTTGCGTGCG+CGG | + | chr7_1:17413107-17413126 | Msa1012340:intron | 60.0% | |
GCTGGATTCGACCAGGACCT+TGG | - | chr7_1:17413191-17413210 | None:intergenic | 60.0% | |
GCCCAAAGCTGGATTCGACC+AGG | - | chr7_1:17413198-17413217 | None:intergenic | 60.0% | |
CACTGCTGCATGCCCAAAGC+TGG | - | chr7_1:17413209-17413228 | None:intergenic | 60.0% | |
GGGAGAGTTTGCCGCCCATT+TGG | + | chr7_1:17413241-17413260 | Msa1012340:intron | 60.0% | |
AGTCTTCGTAGTTGCGCGCG+TGG | + | chr7_1:17413286-17413305 | Msa1012340:intron | 60.0% | |
TGTGATTGCAGCCTCTGGGC+AGG | + | chr7_1:17416035-17416054 | Msa1012340:intron | 60.0% | |
GTGATTGCAGCCTCTGGGCA+GGG | + | chr7_1:17416036-17416055 | Msa1012340:intron | 60.0% | |
AGGACAGCTCCTCTAAGCCC+CGG | - | chr7_1:17416198-17416217 | None:intergenic | 60.0% | |
ACTGTCAACACTTCCCGCCC+AGG | - | chr7_1:17416871-17416890 | None:intergenic | 60.0% | |
!! | TGCTTCGTCGGCTCGAACCA+AGG | + | chr7_1:17417787-17417806 | Msa1012340:intron | 60.0% |
GCGCCCATTTGGGTCCCACA+AGG | + | chr7_1:17413066-17413085 | Msa1012340:intron | 65.0% | |
CTTCGTAGTTGCGCGCGTGG+AGG | + | chr7_1:17413289-17413308 | Msa1012340:intron | 65.0% | |
TTGCGCGCGTGGAGGATACC+AGG | + | chr7_1:17413297-17413316 | Msa1012340:intron | 65.0% | |
TTCCACTCGTCCCTGCCCAG+AGG | - | chr7_1:17416049-17416068 | None:intergenic | 65.0% | |
GGACAGCTCCTCTAAGCCCC+GGG | - | chr7_1:17416197-17416216 | None:intergenic | 65.0% | |
GGTGGCCGGGATTTGAACCC+TGG | + | chr7_1:17418325-17418344 | Msa1012340:intron | 65.0% | |
CTTCGCAGTTGCGTGCGCGG+AGG | + | chr7_1:17413110-17413129 | Msa1012340:intron | 70.0% | |
AGCCTCTGGGCAGGGACGAG+TGG | + | chr7_1:17416044-17416063 | Msa1012340:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 17412492 | 17418538 | 17412492 | ID=Msa1012340;Name=Msa1012340 |
chr7_1 | mRNA | 17412492 | 17418538 | 17412492 | ID=Msa1012340-mRNA-1;Parent=Msa1012340;Name=Msa1012340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=50|0.87|0.88|1|0.87|0.77|9|311|330 |
chr7_1 | exon | 17412492 | 17412898 | 17412492 | ID=Msa1012340-mRNA-1:exon:4384;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17415065 | 17415109 | 17415065 | ID=Msa1012340-mRNA-1:exon:4385;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17415318 | 17415447 | 17415318 | ID=Msa1012340-mRNA-1:exon:4386;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17416184 | 17416247 | 17416184 | ID=Msa1012340-mRNA-1:exon:4387;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17416369 | 17416417 | 17416369 | ID=Msa1012340-mRNA-1:exon:4388;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17416503 | 17416600 | 17416503 | ID=Msa1012340-mRNA-1:exon:4389;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17417259 | 17417361 | 17417259 | ID=Msa1012340-mRNA-1:exon:4390;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17417962 | 17418320 | 17417962 | ID=Msa1012340-mRNA-1:exon:4391;Parent=Msa1012340-mRNA-1 |
chr7_1 | exon | 17418440 | 17418538 | 17418440 | ID=Msa1012340-mRNA-1:exon:4392;Parent=Msa1012340-mRNA-1 |
chr7_1 | five_prime_UTR | 17412492 | 17412541 | 17412492 | ID=Msa1012340-mRNA-1:five_prime_utr;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17412542 | 17412898 | 17412542 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17415065 | 17415109 | 17415065 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17415318 | 17415447 | 17415318 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17416184 | 17416247 | 17416184 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17416369 | 17416417 | 17416369 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17416503 | 17416600 | 17416503 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17417259 | 17417361 | 17417259 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | CDS | 17417962 | 17418108 | 17417962 | ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1 |
chr7_1 | three_prime_UTR | 17418109 | 17418320 | 17418109 | ID=Msa1012340-mRNA-1:three_prime_utr;Parent=Msa1012340-mRNA-1 |
chr7_1 | three_prime_UTR | 17418440 | 17418538 | 17418440 | ID=Msa1012340-mRNA-1:three_prime_utr;Parent=Msa1012340-mRNA-1 |
Gene Sequence |
Protein sequence |