AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012340 MtrunA17_Chr7g0215511 90.936 342 16 3 1 330 1 339 0.0 617
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012340 AT5G38360.1 64.396 323 88 6 27 330 17 331 3.46e-147 418
Msa1012340 AT5G38360.3 66.321 193 58 4 27 216 17 205 1.64e-89 267
Msa1012340 AT5G38360.2 64.571 175 55 4 27 198 17 187 2.62e-78 238

Find 99 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTATTATATTTCCAATTT+AGG 0.160861 7_1:+17415408 Msa1012340:CDS
AGAATATCACATTTCCTATT+TGG 0.180206 7_1:-17418236 None:intergenic
GAGCTTGTCATTTCCTAAAT+TGG 0.182414 7_1:-17415421 None:intergenic
AGCAATCACTGCTAACAAAA+TGG 0.244270 7_1:-17418150 None:intergenic
GTTTGTTCTGTACCTCCTTC+TGG 0.269315 7_1:+17416219 Msa1012340:CDS
TGGAGGATCATGTTGTTAAA+AGG 0.281293 7_1:+17416579 Msa1012340:CDS
CTGTACCTCCTTCTGGTAAT+AGG 0.292018 7_1:+17416226 Msa1012340:CDS
AAAAGAGAAAGAAGAAAGAA+AGG 0.303821 7_1:+17412477 None:intergenic
TGTTATGCTCTTTCTTTGCT+TGG 0.318759 7_1:+17412872 Msa1012340:CDS
GTGCAGAAGTTATTCTTTCA+TGG 0.322299 7_1:+17418065 Msa1012340:CDS
TGCTCTTTCTTTGCTTGGAC+AGG 0.334651 7_1:+17412877 Msa1012340:CDS
AGAACTTCAACAGGGAGATT+TGG 0.337654 7_1:-17417344 None:intergenic
TTCGGTTGCTGGTACACTTC+AGG 0.341976 7_1:+17415088 Msa1012340:CDS
CCAGCTTTGGTATTTGTTCA+TGG 0.349881 7_1:+17412782 Msa1012340:CDS
TGCCCTTCCTTCAGATTGTA+AGG 0.354504 7_1:-17412665 None:intergenic
TGCTTCGCTTCCAGTTCCTT+TGG 0.356897 7_1:+17417319 Msa1012340:CDS
GAAACCAATTGCTGCCTTCA+AGG 0.360515 7_1:+17416396 Msa1012340:CDS
AATTTATACCCGGGGCTTAG+AGG 0.382770 7_1:+17416186 Msa1012340:CDS
TTCAATTTAAATTACCTTGA+AGG 0.386562 7_1:-17416410 None:intergenic
CCCAAAACAAGAACTTCAAC+AGG 0.388064 7_1:-17417353 None:intergenic
ATCTTGCTCGGACATTCATT+TGG 0.398314 7_1:+17415372 Msa1012340:CDS
TGTGTCCAAAGTACTACTTT+TGG 0.398698 7_1:+17418461 Msa1012340:three_prime_UTR
AAAGAGAAAGAAGAAAGAAA+GGG 0.399357 7_1:+17412478 None:intergenic
TTATCATGCTGCTTGGTGTT+GGG 0.400202 7_1:+17412808 Msa1012340:CDS
GAACCAGAAGATTCGGTTGC+TGG 0.401583 7_1:+17415077 Msa1012340:CDS
GTTATCATGCTGCTTGGTGT+TGG 0.403568 7_1:+17412807 Msa1012340:CDS
GTTATTCTTTCATGGCTAAA+GGG 0.404056 7_1:+17418073 Msa1012340:CDS
AGTTATTCTTTCATGGCTAA+AGG 0.406540 7_1:+17418072 Msa1012340:CDS
AAAGAAAAGAAAAGAAAAGT+TGG 0.408927 7_1:-17418527 None:intergenic
CAATAGAGGAGGGTCCAAAT+AGG 0.417104 7_1:+17418222 Msa1012340:three_prime_UTR
TTTCACCAAGCTTCAAACTT+AGG 0.423284 7_1:+17418199 Msa1012340:three_prime_UTR
AAAGTAGCAGAGGAAATGTT+TGG 0.436375 7_1:+17418117 Msa1012340:three_prime_UTR
AAGTGAGTGTTCACCAGCTT+TGG 0.436567 7_1:+17412769 Msa1012340:CDS
AGATTTGGCACCAAAGGAAC+TGG 0.439812 7_1:-17417329 None:intergenic
TTGTCACCAGTTTGTGTTGA+AGG 0.440218 7_1:+17418001 Msa1012340:CDS
ATTACCTTGAAGGCAGCAAT+TGG 0.452074 7_1:-17416400 None:intergenic
ACATACAGCTTGGCTGCAAA+AGG 0.462187 7_1:+17416506 Msa1012340:CDS
GCAAGTCCTTCAACACAAAC+TGG 0.467319 7_1:-17418007 None:intergenic
AAATCCCAAAAGTAGTACTT+TGG 0.468505 7_1:-17418466 None:intergenic
ACATGATGTTGGACCCTTCA+TGG 0.469276 7_1:+17418035 Msa1012340:CDS
GTACCAGCAACCGAATCTTC+TGG 0.470652 7_1:-17415080 None:intergenic
GCAATCACTGCTAACAAAAT+GGG 0.473155 7_1:-17418149 None:intergenic
TTGCTCGGACATTCATTTGG+AGG 0.474558 7_1:+17415375 Msa1012340:CDS
AACTAATGAAAGAAAGTTCA+CGG 0.475580 7_1:+17417267 Msa1012340:CDS
TATGCAAAACTAAATAATAG+TGG 0.476433 7_1:-17418278 None:intergenic
AAGTGATGAACCAGAAGATT+CGG 0.482510 7_1:+17415070 Msa1012340:CDS
AAGCTCTCTTTCTCTTTGCA+AGG 0.494797 7_1:+17416535 Msa1012340:CDS
TATTGCCTAAGTTTGAAGCT+TGG 0.495708 7_1:-17418204 None:intergenic
TCTGCACCTTTCTCCCATGA+AGG 0.497523 7_1:-17418049 None:intergenic
AGTAGCAGTATTGCAGAGAA+AGG 0.504151 7_1:+17412628 Msa1012340:CDS
GCTTCAAACTTAGGCAATAG+AGG 0.517568 7_1:+17418208 Msa1012340:three_prime_UTR
CTAATAGAAAATTTATACCC+GGG 0.522357 7_1:+17416177 Msa1012340:intron
AAATGAATGTCCGAGCAAGA+TGG 0.524223 7_1:-17415370 None:intergenic
CTGCACCTTTCTCCCATGAA+GGG 0.526055 7_1:-17418048 None:intergenic
AAAGAAAAGTTGGATTGCAA+TGG 0.529625 7_1:-17418517 None:intergenic
CCATGAACAAATACCAAAGC+TGG 0.534811 7_1:-17412782 None:intergenic
TAACCAGATTGAGAAAAGAA+AGG 0.540026 7_1:-17412845 None:intergenic
TTGGACCCTTCATGGGAGAA+AGG 0.541489 7_1:+17418043 Msa1012340:CDS
ATGGAAGTTATCATGCTGCT+TGG 0.546302 7_1:+17412801 Msa1012340:CDS
CAATCGCCACCCATCTTGCT+CGG 0.547286 7_1:+17415360 Msa1012340:CDS
GTCCCTTACAATCTGAAGGA+AGG 0.548049 7_1:+17412662 Msa1012340:CDS
AGGACAGCTCCTCTAAGCCC+CGG 0.548358 7_1:-17416195 None:intergenic
AGGAAGAAAGAAAGTAGCAG+AGG 0.549000 7_1:+17418107 Msa1012340:exon
GCTTCCTTCTGGTTTGAACA+TGG 0.550424 7_1:+17412706 Msa1012340:CDS
AACTTTCTTAAATCAAACAA+TGG 0.551344 7_1:-17417293 None:intergenic
ACAACATGATCCTCCATTGT+GGG 0.558962 7_1:-17416572 None:intergenic
AATGAATGTCCGAGCAAGAT+GGG 0.561915 7_1:-17415369 None:intergenic
ACAGGGAGATTTGGCACCAA+AGG 0.562996 7_1:-17417335 None:intergenic
GTTGATTTATAGGATGCAGA+AGG 0.563173 7_1:+17417950 Msa1012340:intron
CTTGGTGTTGGGCTGAACAG+TGG 0.569616 7_1:+17412819 Msa1012340:CDS
TCCCTTACAATCTGAAGGAA+GGG 0.571655 7_1:+17412663 Msa1012340:CDS
TTGGTAGGTGACATACAGCT+TGG 0.571764 7_1:+17416496 Msa1012340:intron
ACTTCCATGTTCAAACCAGA+AGG 0.571906 7_1:-17412710 None:intergenic
CATGATGTTGGACCCTTCAT+GGG 0.577122 7_1:+17418036 Msa1012340:CDS
GCTAAAGGGTTTACACAAGT+AGG 0.582277 7_1:+17418087 Msa1012340:CDS
TCAAACCAGAAGGAAGCTCA+TGG 0.582892 7_1:-17412700 None:intergenic
AACAACATGATCCTCCATTG+TGG 0.583467 7_1:-17416573 None:intergenic
GAGTGTCCCTTACAATCTGA+AGG 0.583633 7_1:+17412658 Msa1012340:CDS
AACTTTGAAAATTGAACACA+CGG 0.587008 7_1:-17412564 None:intergenic
GCCCTTCCTTCAGATTGTAA+GGG 0.590813 7_1:-17412664 None:intergenic
TCTAATAGAAAATTTATACC+CGG 0.591670 7_1:+17416176 Msa1012340:intron
CAAAACTAAATAATAGTGGT+CGG 0.594660 7_1:-17418274 None:intergenic
GTTGGTTACCTATTACCAGA+AGG 0.595739 7_1:-17416234 None:intergenic
GGACAGCTCCTCTAAGCCCC+GGG 0.596185 7_1:-17416194 None:intergenic
TAATAGAAAATTTATACCCG+GGG 0.599409 7_1:+17416178 Msa1012340:intron
GATGAAGCAACAGTGAGTAA+TGG 0.603215 7_1:+17412523 Msa1012340:exon
TGAGTAATGGCAATGACAGT+GGG 0.603814 7_1:+17412536 Msa1012340:exon
ACTTGCTCATGACATGATGT+TGG 0.605959 7_1:+17418024 Msa1012340:CDS
TTAGGAAATGACAAGCTCAA+AGG 0.607742 7_1:+17415426 Msa1012340:CDS
TCAAACTTAGGCAATAGAGG+AGG 0.611515 7_1:+17418211 Msa1012340:three_prime_UTR
GACACACGCAACAGATGTTG+CGG 0.612430 7_1:+17415317 Msa1012340:intron
GTGAGTAATGGCAATGACAG+TGG 0.635161 7_1:+17412535 Msa1012340:exon
GCAATGGAAACAAGAAGACA+AGG 0.658797 7_1:-17418501 None:intergenic
AAGGAGGTACAGAACAAACA+AGG 0.662545 7_1:-17416215 None:intergenic
GGTTACCTATTACCAGAAGG+AGG 0.668365 7_1:-17416231 None:intergenic
CAAACTTAGGCAATAGAGGA+GGG 0.668980 7_1:+17418212 Msa1012340:three_prime_UTR
GAATGTCCGAGCAAGATGGG+TGG 0.676336 7_1:-17415366 None:intergenic
CCAAAACAAGAACTTCAACA+GGG 0.707218 7_1:-17417352 None:intergenic
TGACAAACCATAAAACTGTG+CGG 0.747046 7_1:-17417984 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATACTTAAATGTTT+AGG - chr7_1:17414766-17414785 None:intergenic 10.0%
!! AATAAAATTTCTTAAAATCT+GGG - chr7_1:17416988-17417007 None:intergenic 10.0%
!!! AATTACTTTTTTTTTTTTTG+TGG + chr7_1:17418304-17418323 Msa1012340:intron 10.0%
!! ATTAGATTAAACAAACAATT+TGG - chr7_1:17413464-17413483 None:intergenic 15.0%
!!! GTTCTTGAATTTTTTTTATA+AGG + chr7_1:17413500-17413519 Msa1012340:intron 15.0%
!!! TTTTTTATAAGGAAAATGTT+TGG + chr7_1:17413511-17413530 Msa1012340:intron 15.0%
!! ATAAACTCTTGTAAATAAAT+TGG - chr7_1:17414716-17414735 None:intergenic 15.0%
!!! TGATTTTGATATTATACTTT+TGG + chr7_1:17414981-17415000 Msa1012340:intron 15.0%
!! AAGATACTAAAAATTTAAGT+TGG - chr7_1:17416255-17416274 None:intergenic 15.0%
!!! TTCTTTACTTTTTTTATTAG+TGG + chr7_1:17416349-17416368 Msa1012340:intron 15.0%
!! AAAATATGTTTATAATTGAG+AGG + chr7_1:17416915-17416934 Msa1012340:intron 15.0%
!! CAATAAAATTTCTTAAAATC+TGG - chr7_1:17416989-17417008 None:intergenic 15.0%
!!! AAGAAATTTTATTGAAAGAA+TGG + chr7_1:17416995-17417014 Msa1012340:intron 15.0%
!! AAATATTAACAGAAAAATTC+AGG - chr7_1:17417236-17417255 None:intergenic 15.0%
!! AAAAAACTAACATAAATGTT+GGG + chr7_1:17417416-17417435 Msa1012340:intron 15.0%
!! ATTAATCAATAGCTTAATCA+AGG + chr7_1:17412990-17413009 Msa1012340:intron 20.0%
!!! TATTTTTTTTTGTGTAAACC+TGG - chr7_1:17413318-17413337 None:intergenic 20.0%
!! ACAAAAAAAAATAGTCTCTT+TGG + chr7_1:17413325-17413344 Msa1012340:intron 20.0%
!! AAATCCAAAGATTATAATGA+TGG - chr7_1:17413370-17413389 None:intergenic 20.0%
!!! TAAACAAACTGATTTATGTT+TGG + chr7_1:17414084-17414103 Msa1012340:intron 20.0%
!! ACTAAAATAGACATAACTAA+AGG + chr7_1:17414143-17414162 Msa1012340:intron 20.0%
!! CTATTTCATATACTATAGTA+GGG - chr7_1:17414457-17414476 None:intergenic 20.0%
!! TCTATTTCATATACTATAGT+AGG - chr7_1:17414458-17414477 None:intergenic 20.0%
!!! TTTGATGTATTTTATGTGTT+TGG + chr7_1:17414482-17414501 Msa1012340:intron 20.0%
!! GTATATTATTACATTTGAGA+AGG + chr7_1:17414776-17414795 Msa1012340:intron 20.0%
!! AATGATTCTAAACTAGTAAA+GGG - chr7_1:17415126-17415145 None:intergenic 20.0%
!! TATAACTTTCAATTTATGTG+TGG + chr7_1:17415150-17415169 Msa1012340:intron 20.0%
!! ATGACATACTTCATTATTAT+AGG + chr7_1:17415178-17415197 Msa1012340:intron 20.0%
!! TATAACTTTCAATTTATGTG+TGG + chr7_1:17415150-17415169 Msa1012340:intron 20.0%
!! ATGACATACTTCATTATTAT+AGG + chr7_1:17415178-17415197 Msa1012340:intron 20.0%
!! CAGTATTATATTTCCAATTT+AGG + chr7_1:17415408-17415427 Msa1012340:CDS 20.0%
!! TTAACCATTATAGGATATAT+AGG - chr7_1:17415522-17415541 None:intergenic 20.0%
!! TCTAAACAATTAACCATTAT+AGG - chr7_1:17415531-17415550 None:intergenic 20.0%
!! TCTAATAGAAAATTTATACC+CGG + chr7_1:17416176-17416195 Msa1012340:intron 20.0%
!! TTCAATTTAAATTACCTTGA+AGG - chr7_1:17416413-17416432 None:intergenic 20.0%
!! AACTTTCTTAAATCAAACAA+TGG - chr7_1:17417296-17417315 None:intergenic 20.0%
!! GAAAAAACTAACATAAATGT+TGG + chr7_1:17417415-17417434 Msa1012340:intron 20.0%
!!! AAATTCGACAACTTTTTAAA+TGG + chr7_1:17417494-17417513 Msa1012340:intron 20.0%
!! TATGCAAAACTAAATAATAG+TGG - chr7_1:17418281-17418300 None:intergenic 20.0%
!!! TACTTTTTTTTTTTTTGTGG+TGG + chr7_1:17418307-17418326 Msa1012340:intron 20.0%
!! AACTTTGAAAATTGAACACA+CGG - chr7_1:17412567-17412586 None:intergenic 25.0%
! ATTAATCAATAGCTTAACCA+AGG + chr7_1:17413171-17413190 Msa1012340:intron 25.0%
! AATTGTAACACATTTCTCAA+AGG + chr7_1:17413710-17413729 Msa1012340:intron 25.0%
!!! TTGTTTATTTCTGTTGTTAG+AGG + chr7_1:17413739-17413758 Msa1012340:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + chr7_1:17414040-17414059 Msa1012340:intron 25.0%
! TAAAGGAGAATTGATAAAGA+AGG + chr7_1:17414160-17414179 Msa1012340:intron 25.0%
! TAAAGAAGGAGAATTGATAA+AGG + chr7_1:17414174-17414193 Msa1012340:intron 25.0%
! AAAGAAGGAGAATTGATAAA+GGG + chr7_1:17414175-17414194 Msa1012340:intron 25.0%
!!! TTTTTGGCTAGAATTGATTT+TGG + chr7_1:17414350-17414369 Msa1012340:intron 25.0%
!! AAAATGATCTCTCCTTTTAA+AGG - chr7_1:17414609-17414628 None:intergenic 25.0%
! TTTACCAATTTGCAAAATTC+AGG + chr7_1:17414658-17414677 Msa1012340:intron 25.0%
!! TAATCCTGAATTTTGCAAAT+TGG - chr7_1:17414665-17414684 None:intergenic 25.0%
! GAAATTACAGTAACTTATCT+TGG + chr7_1:17414739-17414758 Msa1012340:intron 25.0%
! TATTGTAATGTTTAGTGTTG+TGG + chr7_1:17414862-17414881 Msa1012340:intron 25.0%
! ATTGTAATGTTTAGTGTTGT+GGG + chr7_1:17414863-17414882 Msa1012340:intron 25.0%
!!! ATTAAGACGGATTTTATACT+TGG + chr7_1:17414912-17414931 Msa1012340:intron 25.0%
! ATACATGACAGAACAATTTA+AGG - chr7_1:17415032-17415051 None:intergenic 25.0%
! GAATGATTCTAAACTAGTAA+AGG - chr7_1:17415127-17415146 None:intergenic 25.0%
! GTTATGTTCATATACTCTTA+TGG + chr7_1:17415266-17415285 Msa1012340:intron 25.0%
! CTTTCCTATATATCCTATAA+TGG + chr7_1:17415515-17415534 Msa1012340:intron 25.0%
! ACTCAATTATCGAAGAATTA+AGG - chr7_1:17415831-17415850 None:intergenic 25.0%
! AATTGTGATCTTTACTACAT+TGG - chr7_1:17415900-17415919 None:intergenic 25.0%
! CTAATAGAAAATTTATACCC+GGG + chr7_1:17416177-17416196 Msa1012340:intron 25.0%
! TAATAGAAAATTTATACCCG+GGG + chr7_1:17416178-17416197 Msa1012340:intron 25.0%
! ATCATTAAATATGACTACAC+TGG + chr7_1:17416316-17416335 Msa1012340:intron 25.0%
!!! TTTTTATTAGTGGACTAGTT+TGG + chr7_1:17416359-17416378 Msa1012340:intron 25.0%
! ATCATGAAAAGAATGATTCA+AGG - chr7_1:17416613-17416632 None:intergenic 25.0%
!!! TTTTTGAGTCAAATTGCAAT+AGG - chr7_1:17416641-17416660 None:intergenic 25.0%
!! ATAACTTTGTAAGTTGAGTT+AGG + chr7_1:17416732-17416751 Msa1012340:intron 25.0%
! GAGATGATATAAAGTAAGAA+TGG + chr7_1:17417079-17417098 Msa1012340:intron 25.0%
! AACTAATGAAAGAAAGTTCA+CGG + chr7_1:17417267-17417286 Msa1012340:CDS 25.0%
! GGTTAATTAAGTGTTAGATT+CGG + chr7_1:17417537-17417556 Msa1012340:intron 25.0%
! GTTAATCATGTGCAAATTTA+AGG - chr7_1:17417615-17417634 None:intergenic 25.0%
! ACTAGATCATAAACCAATTT+GGG - chr7_1:17417688-17417707 None:intergenic 25.0%
! AACTAGATCATAAACCAATT+TGG - chr7_1:17417689-17417708 None:intergenic 25.0%
! ATCCTATAAATCAACAAATG+CGG - chr7_1:17417945-17417964 None:intergenic 25.0%
! AGAATATCACATTTCCTATT+TGG - chr7_1:17418239-17418258 None:intergenic 25.0%
! CAAAACTAAATAATAGTGGT+CGG - chr7_1:17418277-17418296 None:intergenic 25.0%
TAACCAGATTGAGAAAAGAA+AGG - chr7_1:17412848-17412867 None:intergenic 30.0%
TAAGAGTTTGAACACAATAC+TGG - chr7_1:17413036-17413055 None:intergenic 30.0%
AGTATTGTGTTCAAACTCTT+AGG + chr7_1:17413035-17413054 Msa1012340:intron 30.0%
GTATTGTGTTCAAACTCTTA+GGG + chr7_1:17413036-17413055 Msa1012340:intron 30.0%
GACACCATCATTATAATCTT+TGG + chr7_1:17413363-17413382 Msa1012340:intron 30.0%
ATGAGATGTTGAATGTTTGT+AGG + chr7_1:17413628-17413647 Msa1012340:intron 30.0%
TGAGATGTTGAATGTTTGTA+GGG + chr7_1:17413629-17413648 Msa1012340:intron 30.0%
AGTGGCATATGAAATTTATG+AGG + chr7_1:17413915-17413934 Msa1012340:intron 30.0%
GAATTGATAAAGGGCAATAA+AGG + chr7_1:17414184-17414203 Msa1012340:intron 30.0%
GGGCAATAAAGGAAAATAAT+AGG + chr7_1:17414195-17414214 Msa1012340:intron 30.0%
CAAAAACAACATGTTTGGTT+TGG - chr7_1:17414336-17414355 None:intergenic 30.0%
!!! CAAACCAAACATGTTGTTTT+TGG + chr7_1:17414334-17414353 Msa1012340:intron 30.0%
! GCACTGTTTATAATTGCTTT+TGG + chr7_1:17414372-17414391 Msa1012340:intron 30.0%
! ATGTTTCTACACTTTAGAGA+CGG - chr7_1:17414424-17414443 None:intergenic 30.0%
! GATGTATTTTATGTGTTTGG+AGG + chr7_1:17414485-17414504 Msa1012340:intron 30.0%
ACTGATGCATTACAATGTTA+AGG + chr7_1:17414630-17414649 Msa1012340:intron 30.0%
ATTTGAGAAGGAAAAATGTC+AGG + chr7_1:17414788-17414807 Msa1012340:intron 30.0%
ATATGTTATTGACATGCCAT+AGG + chr7_1:17414819-17414838 Msa1012340:intron 30.0%
CAATACATTGAACACAAACA+TGG - chr7_1:17414847-17414866 None:intergenic 30.0%
AAATCCGTCTTAATGTGTTA+GGG - chr7_1:17414906-17414925 None:intergenic 30.0%
AAAATCCGTCTTAATGTGTT+AGG - chr7_1:17414907-17414926 None:intergenic 30.0%
AAAAATGCAGATGACAATGA+TGG - chr7_1:17414954-17414973 None:intergenic 30.0%
CATATAGCATCAGATGAAAA+TGG - chr7_1:17415555-17415574 None:intergenic 30.0%
! TTTTCATCTGATGCTATATG+TGG + chr7_1:17415555-17415574 Msa1012340:intron 30.0%
TTTCATCTGATGCTATATGT+GGG + chr7_1:17415556-17415575 Msa1012340:intron 30.0%
AATGAGATATTCAACTCCAA+GGG - chr7_1:17415622-17415641 None:intergenic 30.0%
AAATGAGATATTCAACTCCA+AGG - chr7_1:17415623-17415642 None:intergenic 30.0%
TAGAAAAAGAAAACCCCTTA+TGG + chr7_1:17415677-17415696 Msa1012340:intron 30.0%
GGAAACCATAATTTCTCTAT+TGG + chr7_1:17415756-17415775 Msa1012340:intron 30.0%
!! AATTGAGTTGACTATCTTTG+TGG + chr7_1:17415843-17415862 Msa1012340:intron 30.0%
! TGTATGTGAGTTTTCATTTC+TGG + chr7_1:17416121-17416140 Msa1012340:intron 30.0%
! GAATTTTCTGTATAGTGTGA+TGG + chr7_1:17416430-17416449 Msa1012340:intron 30.0%
GCATATAAGAAGACGAATAA+AGG - chr7_1:17416458-17416477 None:intergenic 30.0%
TATTTCACAGCATATCATGT+GGG - chr7_1:17416715-17416734 None:intergenic 30.0%
TTATTTCACAGCATATCATG+TGG - chr7_1:17416716-17416735 None:intergenic 30.0%
!!! CAATTTTTTAGCGAATGACT+AGG - chr7_1:17417028-17417047 None:intergenic 30.0%
ACTAGAACTTATCGATGTTA+AGG + chr7_1:17417057-17417076 Msa1012340:intron 30.0%
!!! TCATCGTCGATTATTTTTGT+TGG + chr7_1:17417184-17417203 Msa1012340:intron 30.0%
!!! TTGGTTTTGAAGCTTTTTGA+AGG + chr7_1:17417203-17417222 Msa1012340:intron 30.0%
TTAACAGAAAAATTCAGGCT+CGG - chr7_1:17417231-17417250 None:intergenic 30.0%
! GATTCGGTTAATAGATATAC+CGG + chr7_1:17417553-17417572 Msa1012340:intron 30.0%
ATTCGGTTAATAGATATACC+GGG + chr7_1:17417554-17417573 Msa1012340:intron 30.0%
GGTTAATGAAGTTTAGTAGA+TGG - chr7_1:17417594-17417613 None:intergenic 30.0%
TATTGACAGAGAAGATAACT+AGG - chr7_1:17417866-17417885 None:intergenic 30.0%
!! TACCGCATTTGTTGATTTAT+AGG + chr7_1:17417940-17417959 Msa1012340:intron 30.0%
AGTTATTCTTTCATGGCTAA+AGG + chr7_1:17418072-17418091 Msa1012340:CDS 30.0%
GTTATTCTTTCATGGCTAAA+GGG + chr7_1:17418073-17418092 Msa1012340:CDS 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG + chr7_1:17418311-17418330 Msa1012340:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr7_1:17418352-17418371 None:intergenic 30.0%
AAATCCCAAAAGTAGTACTT+TGG - chr7_1:17418469-17418488 None:intergenic 30.0%
CATTCTTCTTCTTCTTCTTC+TGG - chr7_1:17412742-17412761 None:intergenic 35.0%
! TTGCCTTTCTTTTCTCAATC+TGG + chr7_1:17412842-17412861 Msa1012340:CDS 35.0%
TGTTATGCTCTTTCTTTGCT+TGG + chr7_1:17412872-17412891 Msa1012340:CDS 35.0%
ACATACTCAAATGTCTCTTC+AGG + chr7_1:17413405-17413424 Msa1012340:intron 35.0%
CATACTCAAATGTCTCTTCA+GGG + chr7_1:17413406-17413425 Msa1012340:intron 35.0%
AGTGATGTGATAGATGTGAT+CGG + chr7_1:17413569-17413588 Msa1012340:intron 35.0%
GAGATGTTGAATGTTTGTAG+GGG + chr7_1:17413630-17413649 Msa1012340:intron 35.0%
AATGTTTGTAGGGGAGTAAA+GGG + chr7_1:17413639-17413658 Msa1012340:intron 35.0%
TTCATTACAAGAGACTCAAG+TGG + chr7_1:17413897-17413916 Msa1012340:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + chr7_1:17414257-17414276 Msa1012340:intron 35.0%
CTAGCCAAAAACAACATGTT+TGG - chr7_1:17414341-17414360 None:intergenic 35.0%
! TGTTTCTACACTTTAGAGAC+GGG - chr7_1:17414423-17414442 None:intergenic 35.0%
TATACTATAGTAGGGACAAC+TGG - chr7_1:17414449-17414468 None:intergenic 35.0%
TGGCACATTAAATGAACATG+TGG - chr7_1:17414578-17414597 None:intergenic 35.0%
AAGTGATGAACCAGAAGATT+CGG + chr7_1:17415070-17415089 Msa1012340:CDS 35.0%
TTCTAAACTAGTAAAGGGAG+AGG - chr7_1:17415121-17415140 None:intergenic 35.0%
! GAGCTTGTCATTTCCTAAAT+TGG - chr7_1:17415424-17415443 None:intergenic 35.0%
TTAGGAAATGACAAGCTCAA+AGG + chr7_1:17415426-17415445 Msa1012340:CDS 35.0%
GCACTCGTTTGTTTGAAAAT+TGG + chr7_1:17415474-17415493 Msa1012340:intron 35.0%
TTGGATCTGGTATACCATAA+GGG - chr7_1:17415694-17415713 None:intergenic 35.0%
GCACTCCAATAGAGAAATTA+TGG - chr7_1:17415764-17415783 None:intergenic 35.0%
!! TACCAAATAGTGGATTGAAC+AGG - chr7_1:17416482-17416501 None:intergenic 35.0%
TGTTCAATCCACTATTTGGT+AGG + chr7_1:17416481-17416500 Msa1012340:intron 35.0%
TGGAGGATCATGTTGTTAAA+AGG + chr7_1:17416579-17416598 Msa1012340:CDS 35.0%
! GTTGCTTTGTGAAACATTGA+TGG + chr7_1:17416664-17416683 Msa1012340:intron 35.0%
! AAACATTGATGGTAGTCACT+AGG + chr7_1:17416675-17416694 Msa1012340:intron 35.0%
CCGATACCATCTGAAAATTT+GGG - chr7_1:17416783-17416802 None:intergenic 35.0%
! CCCAAATTTTCAGATGGTAT+CGG + chr7_1:17416780-17416799 Msa1012340:intron 35.0%
TCCGATACCATCTGAAAATT+TGG - chr7_1:17416784-17416803 None:intergenic 35.0%
! TATTTTCAGACCAGATCATG+TGG - chr7_1:17416901-17416920 None:intergenic 35.0%
AATGGAAGACATTTAGCAGT+GGG + chr7_1:17417097-17417116 Msa1012340:intron 35.0%
TCGACGATGAAAACATATCA+TGG - chr7_1:17417174-17417193 None:intergenic 35.0%
CCAAAACAAGAACTTCAACA+GGG - chr7_1:17417355-17417374 None:intergenic 35.0%
!!! CCTGTTGAAGTTCTTGTTTT+GGG + chr7_1:17417353-17417372 Msa1012340:intron 35.0%
CATTGTGGTAAGCTCTATAA+TGG + chr7_1:17417391-17417410 Msa1012340:intron 35.0%
! ATGGTTAATAAGTTGACACC+CGG - chr7_1:17417575-17417594 None:intergenic 35.0%
AAACTTGACAACTTCTTACG+TGG - chr7_1:17417659-17417678 None:intergenic 35.0%
CGTAAGAAGTTGTCAAGTTT+AGG + chr7_1:17417659-17417678 Msa1012340:intron 35.0%
GAGCACTTTCTACTTCTAAT+AGG - chr7_1:17417717-17417736 None:intergenic 35.0%
ATTGAATGACTTTGCTTCGT+CGG + chr7_1:17417775-17417794 Msa1012340:intron 35.0%
CAAATGCGGTAAACTACATT+AGG - chr7_1:17417931-17417950 None:intergenic 35.0%
! GTTGATTTATAGGATGCAGA+AGG + chr7_1:17417950-17417969 Msa1012340:intron 35.0%
! AAAGAAACCGCACAGTTTTA+TGG + chr7_1:17417977-17417996 Msa1012340:CDS 35.0%
TGACAAACCATAAAACTGTG+CGG - chr7_1:17417987-17418006 None:intergenic 35.0%
GTGCAGAAGTTATTCTTTCA+TGG + chr7_1:17418065-17418084 Msa1012340:CDS 35.0%
AAAGTAGCAGAGGAAATGTT+TGG + chr7_1:17418117-17418136 Msa1012340:three_prime_UTR 35.0%
GCAATCACTGCTAACAAAAT+GGG - chr7_1:17418152-17418171 None:intergenic 35.0%
AGCAATCACTGCTAACAAAA+TGG - chr7_1:17418153-17418172 None:intergenic 35.0%
TTTCACCAAGCTTCAAACTT+AGG + chr7_1:17418199-17418218 Msa1012340:three_prime_UTR 35.0%
! TATTGCCTAAGTTTGAAGCT+TGG - chr7_1:17418207-17418226 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG + chr7_1:17418312-17418331 Msa1012340:intron 35.0%
CATAATATATGCAAGGTCCA+GGG - chr7_1:17418345-17418364 None:intergenic 35.0%
!! TGTGTCCAAAGTACTACTTT+TGG + chr7_1:17418461-17418480 Msa1012340:three_prime_UTR 35.0%
!! GTGTCCAAAGTACTACTTTT+GGG + chr7_1:17418462-17418481 Msa1012340:three_prime_UTR 35.0%
GATGAAGCAACAGTGAGTAA+TGG + chr7_1:17412523-17412542 Msa1012340:exon 40.0%
TGAGTAATGGCAATGACAGT+GGG + chr7_1:17412536-17412555 Msa1012340:exon 40.0%
AGTAGCAGTATTGCAGAGAA+AGG + chr7_1:17412628-17412647 Msa1012340:CDS 40.0%
TCCCTTACAATCTGAAGGAA+GGG + chr7_1:17412663-17412682 Msa1012340:CDS 40.0%
! ATTTTCCATGAGCTTCCTTC+TGG + chr7_1:17412695-17412714 Msa1012340:CDS 40.0%
ACTTCCATGTTCAAACCAGA+AGG - chr7_1:17412713-17412732 None:intergenic 40.0%
CCATGAACAAATACCAAAGC+TGG - chr7_1:17412785-17412804 None:intergenic 40.0%
! CCAGCTTTGGTATTTGTTCA+TGG + chr7_1:17412782-17412801 Msa1012340:CDS 40.0%
ATGGAAGTTATCATGCTGCT+TGG + chr7_1:17412801-17412820 Msa1012340:CDS 40.0%
!! TTATCATGCTGCTTGGTGTT+GGG + chr7_1:17412808-17412827 Msa1012340:CDS 40.0%
TGCAGCAGTGTTAAAACTCT+TGG + chr7_1:17413219-17413238 Msa1012340:intron 40.0%
GCAGCAGTGTTAAAACTCTT+GGG + chr7_1:17413220-17413239 Msa1012340:intron 40.0%
CAGCAGTGTTAAAACTCTTG+GGG + chr7_1:17413221-17413240 Msa1012340:intron 40.0%
TGAGAATGCTACACACATTG+AGG + chr7_1:17413436-17413455 Msa1012340:intron 40.0%
GAGAATGCTACACACATTGA+GGG + chr7_1:17413437-17413456 Msa1012340:intron 40.0%
TATCACATCACTCTCTCTCA+AGG - chr7_1:17413561-17413580 None:intergenic 40.0%
GAATGTTTGTAGGGGAGTAA+AGG + chr7_1:17413638-17413657 Msa1012340:intron 40.0%
ACGAAACACGTATACGATGT+AGG + chr7_1:17413797-17413816 Msa1012340:intron 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + chr7_1:17414273-17414292 Msa1012340:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + chr7_1:17414287-17414306 Msa1012340:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + chr7_1:17414290-17414309 Msa1012340:intron 40.0%
TGATGTGAGATTCACGTAGA+AGG + chr7_1:17414552-17414571 Msa1012340:intron 40.0%
!! TCCTTTTAAAGGCTACGATG+TGG - chr7_1:17414598-17414617 None:intergenic 40.0%
AGAAGGAAAAATGTCAGGAG+AGG + chr7_1:17414793-17414812 Msa1012340:intron 40.0%
GAAGGAAAAATGTCAGGAGA+GGG + chr7_1:17414794-17414813 Msa1012340:intron 40.0%
AAGGAAAAATGTCAGGAGAG+GGG + chr7_1:17414795-17414814 Msa1012340:intron 40.0%
TGTTTAGTGTTGTGGGATTG+TGG + chr7_1:17414870-17414889 Msa1012340:intron 40.0%
GCATCCCTAACACATTAAGA+CGG + chr7_1:17414899-17414918 Msa1012340:intron 40.0%
AATGCAGATGACAATGATGG+TGG - chr7_1:17414951-17414970 None:intergenic 40.0%
TCATGTATTCTACATGCGCA+GGG + chr7_1:17415044-17415063 Msa1012340:intron 40.0%
AATGAATGTCCGAGCAAGAT+GGG - chr7_1:17415372-17415391 None:intergenic 40.0%
AAATGAATGTCCGAGCAAGA+TGG - chr7_1:17415373-17415392 None:intergenic 40.0%
ATCTTGCTCGGACATTCATT+TGG + chr7_1:17415372-17415391 Msa1012340:CDS 40.0%
!! TCAAAGGTACTTCCTGATTC+TGG + chr7_1:17415442-17415461 Msa1012340:intron 40.0%
TGCATGAATAAGCCAGAATC+AGG - chr7_1:17415457-17415476 None:intergenic 40.0%
TGGATCTGGTATACCATAAG+GGG - chr7_1:17415693-17415712 None:intergenic 40.0%
GTTGGATCTGGTATACCATA+AGG - chr7_1:17415695-17415714 None:intergenic 40.0%
ATGGTATACCAGATCCAACT+CGG + chr7_1:17415696-17415715 Msa1012340:intron 40.0%
TTTGTCCATCTGTCTGATGA+AGG + chr7_1:17415787-17415806 Msa1012340:intron 40.0%
TTGTCCATCTGTCTGATGAA+GGG + chr7_1:17415788-17415807 Msa1012340:intron 40.0%
TGCATGCACGTTAGATCATA+GGG - chr7_1:17415962-17415981 None:intergenic 40.0%
ATCTAACGTGCATGCAGAAT+TGG + chr7_1:17415966-17415985 Msa1012340:intron 40.0%
! AAGGAGGTACAGAACAAACA+AGG - chr7_1:17416218-17416237 None:intergenic 40.0%
GTTGGTTACCTATTACCAGA+AGG - chr7_1:17416237-17416256 None:intergenic 40.0%
ATTACCTTGAAGGCAGCAAT+TGG - chr7_1:17416403-17416422 None:intergenic 40.0%
CACCTGTTCAATCCACTATT+TGG + chr7_1:17416477-17416496 Msa1012340:intron 40.0%
GTATGTCACCTACCAAATAG+TGG - chr7_1:17416492-17416511 None:intergenic 40.0%
AAGCTCTCTTTCTCTTTGCA+AGG + chr7_1:17416535-17416554 Msa1012340:CDS 40.0%
! GACATTTTTCTCACCCACAA+TGG + chr7_1:17416559-17416578 Msa1012340:CDS 40.0%
! ATTTTTCTCACCCACAATGG+AGG + chr7_1:17416562-17416581 Msa1012340:CDS 40.0%
ACAACATGATCCTCCATTGT+GGG - chr7_1:17416575-17416594 None:intergenic 40.0%
AACAACATGATCCTCCATTG+TGG - chr7_1:17416576-17416595 None:intergenic 40.0%
! CTTTGTAAGTTGAGTTAGGC+CGG + chr7_1:17416736-17416755 Msa1012340:intron 40.0%
ATCGGAGTCTATTCAAGATC+CGG + chr7_1:17416798-17416817 Msa1012340:intron 40.0%
AAGCTCAAGATATCTAGTCC+TGG + chr7_1:17416850-17416869 Msa1012340:intron 40.0%
AGCTCAAGATATCTAGTCCT+GGG + chr7_1:17416851-17416870 Msa1012340:intron 40.0%
AAAACTGACGTGTAAGGTGA+GGG - chr7_1:17416944-17416963 None:intergenic 40.0%
GAATGGAAGACATTTAGCAG+TGG + chr7_1:17417096-17417115 Msa1012340:intron 40.0%
ATGGAAGACATTTAGCAGTG+GGG + chr7_1:17417098-17417117 Msa1012340:intron 40.0%
!!! AATGGAAGGTTTTGGTGTCA+TGG + chr7_1:17417125-17417144 Msa1012340:intron 40.0%
!!! AAGGTTTTGGTGTCATGGAT+TGG + chr7_1:17417130-17417149 Msa1012340:intron 40.0%
AGAACTTCAACAGGGAGATT+TGG - chr7_1:17417347-17417366 None:intergenic 40.0%
!! CCCTGTTGAAGTTCTTGTTT+TGG + chr7_1:17417352-17417371 Msa1012340:intron 40.0%
CCCAAAACAAGAACTTCAAC+AGG - chr7_1:17417356-17417375 None:intergenic 40.0%
CGCAAAGAATGACTTCATTG+TGG + chr7_1:17417376-17417395 Msa1012340:intron 40.0%
CAAGTTTAGGTGTCCCAAAT+TGG + chr7_1:17417672-17417691 Msa1012340:intron 40.0%
AAACTGAATTCCTATCCGCT+AGG - chr7_1:17417748-17417767 None:intergenic 40.0%
AAGCACTTCATTCTCATCCT+TGG - chr7_1:17417807-17417826 None:intergenic 40.0%
TTGTCACCAGTTTGTGTTGA+AGG + chr7_1:17418001-17418020 Msa1012340:CDS 40.0%
ACTTGCTCATGACATGATGT+TGG + chr7_1:17418024-17418043 Msa1012340:CDS 40.0%
GCTAAAGGGTTTACACAAGT+AGG + chr7_1:17418087-17418106 Msa1012340:CDS 40.0%
AGGAAGAAAGAAAGTAGCAG+AGG + chr7_1:17418107-17418126 Msa1012340:exon 40.0%
GCTTCAAACTTAGGCAATAG+AGG + chr7_1:17418208-17418227 Msa1012340:three_prime_UTR 40.0%
TCAAACTTAGGCAATAGAGG+AGG + chr7_1:17418211-17418230 Msa1012340:three_prime_UTR 40.0%
CAAACTTAGGCAATAGAGGA+GGG + chr7_1:17418212-17418231 Msa1012340:three_prime_UTR 40.0%
GCATAATATATGCAAGGTCC+AGG - chr7_1:17418346-17418365 None:intergenic 40.0%
!!! CTACTTTTGGGATTTCTAGC+TGG + chr7_1:17418474-17418493 Msa1012340:three_prime_UTR 40.0%
GCAATGGAAACAAGAAGACA+AGG - chr7_1:17418504-17418523 None:intergenic 40.0%
GTGAGTAATGGCAATGACAG+TGG + chr7_1:17412535-17412554 Msa1012340:exon 45.0%
GAGTGTCCCTTACAATCTGA+AGG + chr7_1:17412658-17412677 Msa1012340:CDS 45.0%
GTCCCTTACAATCTGAAGGA+AGG + chr7_1:17412662-17412681 Msa1012340:CDS 45.0%
GCCCTTCCTTCAGATTGTAA+GGG - chr7_1:17412667-17412686 None:intergenic 45.0%
TGCCCTTCCTTCAGATTGTA+AGG - chr7_1:17412668-17412687 None:intergenic 45.0%
TCAAACCAGAAGGAAGCTCA+TGG - chr7_1:17412703-17412722 None:intergenic 45.0%
!! GCTTCCTTCTGGTTTGAACA+TGG + chr7_1:17412706-17412725 Msa1012340:CDS 45.0%
AAGTGAGTGTTCACCAGCTT+TGG + chr7_1:17412769-17412788 Msa1012340:CDS 45.0%
!! GTTATCATGCTGCTTGGTGT+TGG + chr7_1:17412807-17412826 Msa1012340:CDS 45.0%
TGCTCTTTCTTTGCTTGGAC+AGG + chr7_1:17412877-17412896 Msa1012340:CDS 45.0%
TCAAGGTCCTAGTTCGAACT+TGG + chr7_1:17413007-17413026 Msa1012340:intron 45.0%
CTGGATTCCAAGTTCGAACT+AGG - chr7_1:17413017-17413036 None:intergenic 45.0%
CAATAGCTTAACCAAGGTCC+TGG + chr7_1:17413177-17413196 Msa1012340:intron 45.0%
! GAGCCTTATGAGACCCAAAT+GGG - chr7_1:17413258-17413277 None:intergenic 45.0%
!! GATGTGATCGGTTGATGATG+TGG + chr7_1:17413581-17413600 Msa1012340:intron 45.0%
!! TGATCGGTTGATGATGTGGT+TGG + chr7_1:17413585-17413604 Msa1012340:intron 45.0%
ACACGTATACGATGTAGGTG+TGG + chr7_1:17413802-17413821 Msa1012340:intron 45.0%
CACGTATACGATGTAGGTGT+GGG + chr7_1:17413803-17413822 Msa1012340:intron 45.0%
CACTCTTTCTCGTGTGTGTT+TGG + chr7_1:17413948-17413967 Msa1012340:intron 45.0%
AGCCAAAAGCTGAACCAAAC+AGG + chr7_1:17414397-17414416 Msa1012340:intron 45.0%
GCCACATCGTAGCCTTTAAA+AGG + chr7_1:17414594-17414613 Msa1012340:intron 45.0%
GAACACAAACATGGAGCCTA+TGG - chr7_1:17414838-17414857 None:intergenic 45.0%
GTCATGTATTCTACATGCGC+AGG + chr7_1:17415043-17415062 Msa1012340:intron 45.0%
CGTGTGTCTACTGTAGAACA+TGG - chr7_1:17415305-17415324 None:intergenic 45.0%
TTGCTCGGACATTCATTTGG+AGG + chr7_1:17415375-17415394 Msa1012340:CDS 45.0%
! AACTACTTCCGAGTTGGATC+TGG - chr7_1:17415707-17415726 None:intergenic 45.0%
GTGATGAACTACTTCCGAGT+TGG - chr7_1:17415713-17415732 None:intergenic 45.0%
GGAAGTAGTTCATCACCTGT+GGG + chr7_1:17415717-17415736 Msa1012340:intron 45.0%
TTCTCCCTTCATCAGACAGA+TGG - chr7_1:17415795-17415814 None:intergenic 45.0%
GACAAGTGAGATCGTCACAT+CGG - chr7_1:17415939-17415958 None:intergenic 45.0%
GCATGCACGTTAGATCATAG+GGG - chr7_1:17415961-17415980 None:intergenic 45.0%
CTGCATGCACGTTAGATCAT+AGG - chr7_1:17415963-17415982 None:intergenic 45.0%
TATTGTGTGATTGCAGCCTC+TGG + chr7_1:17416030-17416049 Msa1012340:intron 45.0%
ATTGTGTGATTGCAGCCTCT+GGG + chr7_1:17416031-17416050 Msa1012340:intron 45.0%
CAAACGAGTGTATGTCTGTG+TGG - chr7_1:17416074-17416093 None:intergenic 45.0%
AATTTATACCCGGGGCTTAG+AGG + chr7_1:17416186-17416205 Msa1012340:CDS 45.0%
GTTTGTTCTGTACCTCCTTC+TGG + chr7_1:17416219-17416238 Msa1012340:CDS 45.0%
CTGTACCTCCTTCTGGTAAT+AGG + chr7_1:17416226-17416245 Msa1012340:CDS 45.0%
GGTTACCTATTACCAGAAGG+AGG - chr7_1:17416234-17416253 None:intergenic 45.0%
GAAACCAATTGCTGCCTTCA+AGG + chr7_1:17416396-17416415 Msa1012340:CDS 45.0%
TTGGTAGGTGACATACAGCT+TGG + chr7_1:17416496-17416515 Msa1012340:intron 45.0%
ACATACAGCTTGGCTGCAAA+AGG + chr7_1:17416506-17416525 Msa1012340:CDS 45.0%
GCGTACTCACTCTACAAAAC+CGG - chr7_1:17416758-17416777 None:intergenic 45.0%
! ACGCAGCCCAAATTTTCAGA+TGG + chr7_1:17416774-17416793 Msa1012340:intron 45.0%
GAGTCTATTCAAGATCCGGT+TGG + chr7_1:17416802-17416821 Msa1012340:intron 45.0%
GCTACCACTATTAGGCCATT+CGG + chr7_1:17416824-17416843 Msa1012340:intron 45.0%
CTACCACTATTAGGCCATTC+GGG + chr7_1:17416825-17416844 Msa1012340:intron 45.0%
TATCTTGAGCTTGACCCGAA+TGG - chr7_1:17416842-17416861 None:intergenic 45.0%
TCAAGATATCTAGTCCTGGG+CGG + chr7_1:17416854-17416873 Msa1012340:intron 45.0%
AGTTCCACATCCACATGATC+TGG + chr7_1:17416888-17416907 Msa1012340:intron 45.0%
CAAAACTGACGTGTAAGGTG+AGG - chr7_1:17416945-17416964 None:intergenic 45.0%
CGCTACAAAACTGACGTGTA+AGG - chr7_1:17416950-17416969 None:intergenic 45.0%
ATTTAGCAGTGGGGCTAGAA+TGG + chr7_1:17417107-17417126 Msa1012340:intron 45.0%
!!! GTTTTGGTGTCATGGATTGG+TGG + chr7_1:17417133-17417152 Msa1012340:intron 45.0%
AGATTTGGCACCAAAGGAAC+TGG - chr7_1:17417332-17417351 None:intergenic 45.0%
GTTAGCGTATTTCACACACG+TGG - chr7_1:17417637-17417656 None:intergenic 45.0%
TCCTATCCGCTAGGATTCTA+GGG - chr7_1:17417739-17417758 None:intergenic 45.0%
TTCCTATCCGCTAGGATTCT+AGG - chr7_1:17417740-17417759 None:intergenic 45.0%
GCAAGTCCTTCAACACAAAC+TGG - chr7_1:17418010-17418029 None:intergenic 45.0%
ACATGATGTTGGACCCTTCA+TGG + chr7_1:17418035-17418054 Msa1012340:CDS 45.0%
CATGATGTTGGACCCTTCAT+GGG + chr7_1:17418036-17418055 Msa1012340:CDS 45.0%
CAATAGAGGAGGGTCCAAAT+AGG + chr7_1:17418222-17418241 Msa1012340:three_prime_UTR 45.0%
GTGAGCTTAGCTCAGTTGTA+GGG - chr7_1:17418374-17418393 None:intergenic 45.0%
! AGGGAGATTTTGCGCCCATT+TGG + chr7_1:17413055-17413074 Msa1012340:intron 50.0%
! GGGAGATTTTGCGCCCATTT+GGG + chr7_1:17413056-17413075 Msa1012340:intron 50.0%
! CATTATCCCTCGAGCCTTGT+GGG - chr7_1:17413083-17413102 None:intergenic 50.0%
TCCTGGTCGAATCCAGCTTT+GGG + chr7_1:17413194-17413213 Msa1012340:intron 50.0%
CCTTATGAGACCCAAATGGG+CGG - chr7_1:17413255-17413274 None:intergenic 50.0%
! CGAGCCTTATGAGACCCAAA+TGG - chr7_1:17413259-17413278 None:intergenic 50.0%
TTTGGGTCTCATAAGGCTCG+AGG + chr7_1:17413259-17413278 Msa1012340:intron 50.0%
TTGGGTCTCATAAGGCTCGA+GGG + chr7_1:17413260-17413279 Msa1012340:intron 50.0%
ATGTAGGTGTGGGTGCGATA+TGG + chr7_1:17413813-17413832 Msa1012340:intron 50.0%
GTGGGTGCGATATGGATACA+TGG + chr7_1:17413821-17413840 Msa1012340:intron 50.0%
!! GGCCTGTTTGGTTCAGCTTT+TGG - chr7_1:17414402-17414421 None:intergenic 50.0%
! ACTTTAGAGACGGGCCTGTT+TGG - chr7_1:17414414-17414433 None:intergenic 50.0%
! GAACCAGAAGATTCGGTTGC+TGG + chr7_1:17415077-17415096 Msa1012340:CDS 50.0%
GTACCAGCAACCGAATCTTC+TGG - chr7_1:17415083-17415102 None:intergenic 50.0%
TTCGGTTGCTGGTACACTTC+AGG + chr7_1:17415088-17415107 Msa1012340:CDS 50.0%
GACACACGCAACAGATGTTG+CGG + chr7_1:17415317-17415336 Msa1012340:intron 50.0%
CGGAAGTAGTTCATCACCTG+TGG + chr7_1:17415716-17415735 Msa1012340:intron 50.0%
AGTTCATCACCTGTGGGATC+TGG + chr7_1:17415723-17415742 Msa1012340:intron 50.0%
CACTATCAACCAGATCCCAC+AGG - chr7_1:17415735-17415754 None:intergenic 50.0%
!! GTGGGATCTGGTTGATAGTG+AGG + chr7_1:17415735-17415754 Msa1012340:intron 50.0%
TGTACAAGTTCGCGAGAAGC+TGG + chr7_1:17415873-17415892 Msa1012340:intron 50.0%
! TCCGGTTGGCTACCACTATT+AGG + chr7_1:17416816-17416835 Msa1012340:intron 50.0%
GCCTAATAGTGGTAGCCAAC+CGG - chr7_1:17416820-17416839 None:intergenic 50.0%
TGACCCGAATGGCCTAATAG+TGG - chr7_1:17416831-17416850 None:intergenic 50.0%
CAAGATATCTAGTCCTGGGC+GGG + chr7_1:17416855-17416874 Msa1012340:intron 50.0%
CAGACCAGATCATGTGGATG+TGG - chr7_1:17416895-17416914 None:intergenic 50.0%
! GGGGCTAGAATGGAAGGTTT+TGG + chr7_1:17417117-17417136 Msa1012340:intron 50.0%
TGCTTCGCTTCCAGTTCCTT+TGG + chr7_1:17417319-17417338 Msa1012340:CDS 50.0%
ACAGGGAGATTTGGCACCAA+AGG - chr7_1:17417338-17417357 None:intergenic 50.0%
GATCACGTAGTTCGCACAAG+TGG + chr7_1:17417516-17417535 Msa1012340:intron 50.0%
AGTGCTCCCTAGAATCCTAG+CGG + chr7_1:17417730-17417749 Msa1012340:intron 50.0%
! TCCCTAGAATCCTAGCGGAT+AGG + chr7_1:17417735-17417754 Msa1012340:intron 50.0%
TTGGACCCTTCATGGGAGAA+AGG + chr7_1:17418043-17418062 Msa1012340:CDS 50.0%
CTGCACCTTTCTCCCATGAA+GGG - chr7_1:17418051-17418070 None:intergenic 50.0%
TCTGCACCTTTCTCCCATGA+AGG - chr7_1:17418052-17418071 None:intergenic 50.0%
AAGGTCCAGGGTTCAAATCC+CGG - chr7_1:17418333-17418352 None:intergenic 50.0%
CGTGAGCTTAGCTCAGTTGT+AGG - chr7_1:17418375-17418394 None:intergenic 50.0%
!! CTTGGTGTTGGGCTGAACAG+TGG + chr7_1:17412819-17412838 Msa1012340:CDS 55.0%
! GAGCCTTGTGGGACCCAAAT+GGG - chr7_1:17413072-17413091 None:intergenic 55.0%
CCATTATCCCTCGAGCCTTG+TGG - chr7_1:17413084-17413103 None:intergenic 55.0%
CCACAAGGCTCGAGGGATAA+TGG + chr7_1:17413081-17413100 Msa1012340:intron 55.0%
GTCCTGGTCGAATCCAGCTT+TGG + chr7_1:17413193-17413212 Msa1012340:intron 55.0%
GGAGAGTTTGCCGCCCATTT+GGG + chr7_1:17413242-17413261 Msa1012340:intron 55.0%
CCGCCCATTTGGGTCTCATA+AGG + chr7_1:17413252-17413271 Msa1012340:intron 55.0%
CAATCGCCACCCATCTTGCT+CGG + chr7_1:17415360-17415379 Msa1012340:CDS 55.0%
GAATGTCCGAGCAAGATGGG+TGG - chr7_1:17415369-17415388 None:intergenic 55.0%
CACATGTACGCACACACCCT+TGG + chr7_1:17415603-17415622 Msa1012340:intron 55.0%
AGCAGTGGGGCTAGAATGGA+AGG + chr7_1:17417111-17417130 Msa1012340:intron 55.0%
! CGAGCCTTGTGGGACCCAAA+TGG - chr7_1:17413073-17413092 None:intergenic 60.0%
TTTGGGTCCCACAAGGCTCG+AGG + chr7_1:17413073-17413092 Msa1012340:intron 60.0%
TTGGGTCCCACAAGGCTCGA+GGG + chr7_1:17413074-17413093 Msa1012340:intron 60.0%
AGTCTTCGCAGTTGCGTGCG+CGG + chr7_1:17413107-17413126 Msa1012340:intron 60.0%
GCTGGATTCGACCAGGACCT+TGG - chr7_1:17413191-17413210 None:intergenic 60.0%
GCCCAAAGCTGGATTCGACC+AGG - chr7_1:17413198-17413217 None:intergenic 60.0%
CACTGCTGCATGCCCAAAGC+TGG - chr7_1:17413209-17413228 None:intergenic 60.0%
GGGAGAGTTTGCCGCCCATT+TGG + chr7_1:17413241-17413260 Msa1012340:intron 60.0%
AGTCTTCGTAGTTGCGCGCG+TGG + chr7_1:17413286-17413305 Msa1012340:intron 60.0%
TGTGATTGCAGCCTCTGGGC+AGG + chr7_1:17416035-17416054 Msa1012340:intron 60.0%
GTGATTGCAGCCTCTGGGCA+GGG + chr7_1:17416036-17416055 Msa1012340:intron 60.0%
AGGACAGCTCCTCTAAGCCC+CGG - chr7_1:17416198-17416217 None:intergenic 60.0%
ACTGTCAACACTTCCCGCCC+AGG - chr7_1:17416871-17416890 None:intergenic 60.0%
!! TGCTTCGTCGGCTCGAACCA+AGG + chr7_1:17417787-17417806 Msa1012340:intron 60.0%
GCGCCCATTTGGGTCCCACA+AGG + chr7_1:17413066-17413085 Msa1012340:intron 65.0%
CTTCGTAGTTGCGCGCGTGG+AGG + chr7_1:17413289-17413308 Msa1012340:intron 65.0%
TTGCGCGCGTGGAGGATACC+AGG + chr7_1:17413297-17413316 Msa1012340:intron 65.0%
TTCCACTCGTCCCTGCCCAG+AGG - chr7_1:17416049-17416068 None:intergenic 65.0%
GGACAGCTCCTCTAAGCCCC+GGG - chr7_1:17416197-17416216 None:intergenic 65.0%
GGTGGCCGGGATTTGAACCC+TGG + chr7_1:17418325-17418344 Msa1012340:intron 65.0%
CTTCGCAGTTGCGTGCGCGG+AGG + chr7_1:17413110-17413129 Msa1012340:intron 70.0%
AGCCTCTGGGCAGGGACGAG+TGG + chr7_1:17416044-17416063 Msa1012340:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17412492 17418538 17412492 ID=Msa1012340;Name=Msa1012340
chr7_1 mRNA 17412492 17418538 17412492 ID=Msa1012340-mRNA-1;Parent=Msa1012340;Name=Msa1012340-mRNA-1;_AED=0.22;_eAED=0.22;_QI=50|0.87|0.88|1|0.87|0.77|9|311|330
chr7_1 exon 17412492 17412898 17412492 ID=Msa1012340-mRNA-1:exon:4384;Parent=Msa1012340-mRNA-1
chr7_1 exon 17415065 17415109 17415065 ID=Msa1012340-mRNA-1:exon:4385;Parent=Msa1012340-mRNA-1
chr7_1 exon 17415318 17415447 17415318 ID=Msa1012340-mRNA-1:exon:4386;Parent=Msa1012340-mRNA-1
chr7_1 exon 17416184 17416247 17416184 ID=Msa1012340-mRNA-1:exon:4387;Parent=Msa1012340-mRNA-1
chr7_1 exon 17416369 17416417 17416369 ID=Msa1012340-mRNA-1:exon:4388;Parent=Msa1012340-mRNA-1
chr7_1 exon 17416503 17416600 17416503 ID=Msa1012340-mRNA-1:exon:4389;Parent=Msa1012340-mRNA-1
chr7_1 exon 17417259 17417361 17417259 ID=Msa1012340-mRNA-1:exon:4390;Parent=Msa1012340-mRNA-1
chr7_1 exon 17417962 17418320 17417962 ID=Msa1012340-mRNA-1:exon:4391;Parent=Msa1012340-mRNA-1
chr7_1 exon 17418440 17418538 17418440 ID=Msa1012340-mRNA-1:exon:4392;Parent=Msa1012340-mRNA-1
chr7_1 five_prime_UTR 17412492 17412541 17412492 ID=Msa1012340-mRNA-1:five_prime_utr;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17412542 17412898 17412542 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17415065 17415109 17415065 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17415318 17415447 17415318 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17416184 17416247 17416184 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17416369 17416417 17416369 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17416503 17416600 17416503 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17417259 17417361 17417259 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 CDS 17417962 17418108 17417962 ID=Msa1012340-mRNA-1:cds;Parent=Msa1012340-mRNA-1
chr7_1 three_prime_UTR 17418109 17418320 17418109 ID=Msa1012340-mRNA-1:three_prime_utr;Parent=Msa1012340-mRNA-1
chr7_1 three_prime_UTR 17418440 17418538 17418440 ID=Msa1012340-mRNA-1:three_prime_utr;Parent=Msa1012340-mRNA-1
Gene Sequence

>Msa1012340

ATGGCAATGACAGTGGGTCTTTCCGTGTGTTCAATTTTCAAAGTTTCTTATCATGATAATAATAATTACAACAATAAGAGAGTAACAGTAGCAGTATTGCAGAGAAAGGAGAAGATGAGTGTCCCTTACAATCTGAAGGAAGGGCAATCTCGTATTTTCCATGAGCTTCCTTCTGGTTTGAACATGGAAGTAATTGTCCAGAAGAAGAAGAAGAAGAATGAAAGTGAAAGTGAGTGTTCACCAGCTTTGGTATTTGTTCATGGAAGTTATCATGCTGCTTGGTGTTGGGCTGAACAGTGGTTGCCTTTCTTTTCTCAATCTGGTTATGATTGTTATGCTCTTTCTTTGCTTGGACAGGGTGAAAGTGATGAACCAGAAGATTCGGTTGCTGGTACACTTCAGACACACGCAACAGATGTTGCGGATTTTATTCATCGAAATATTCAATCGCCACCCATCTTGCTCGGACATTCATTTGGAGGACTAATTATTCAGTATTATATTTCCAATTTAGGAAATGACAAGCTCAAAGAAAATTTATACCCGGGGCTTAGAGGAGCTGTCCTTGTTTGTTCTGTACCTCCTTCTGGTAATAGTGGACTAGTTTGGCGATATCTAATTTCGAAACCAATTGCTGCCTTCAAGGTGACATACAGCTTGGCTGCAAAAGGTTTTCAAAGCTCTCTTTCTCTTTGCAAGGAGACATTTTTCTCACCCACAATGGAGGATCATGTTGTTAAAAGATATCAAGAACTAATGAAAGAAAGTTCACGGATGCCATTGTTTGATTTAAGAAAGTTGAATGCTTCGCTTCCAGTTCCTTTGGTGCCAAATCTCCCTGTTGAAGATGCAGAAGGACTCAAAGAAACCGCACAGTTTTATGGTTTGTCACCAGTTTGTGTTGAAGGACTTGCTCATGACATGATGTTGGACCCTTCATGGGAGAAAGGTGCAGAAGTTATTCTTTCATGGCTAAAGGGTTTACACAAGTAG

Protein sequence

>Msa1012340

MAMTVGLSVCSIFKVSYHDNNNYNNKRVTVAVLQRKEKMSVPYNLKEGQSRIFHELPSGLNMEVIVQKKKKKNESESECSPALVFVHGSYHAAWCWAEQWLPFFSQSGYDCYALSLLGQGESDEPEDSVAGTLQTHATDVADFIHRNIQSPPILLGHSFGGLIIQYYISNLGNDKLKENLYPGLRGAVLVCSVPPSGNSGLVWRYLISKPIAAFKVTYSLAAKGFQSSLSLCKETFFSPTMEDHVVKRYQELMKESSRMPLFDLRKLNASLPVPLVPNLPVEDAEGLKETAQFYGLSPVCVEGLAHDMMLDPSWEKGAEVILSWLKGLHK*