AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012440 MtrunA17_Chr7g0215511 93.860 342 18 2 1 342 1 339 0.0 645
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012440 AT5G38360.1 68.025 319 95 4 27 342 17 331 2.18e-158 447
Msa1012440 AT5G38360.3 66.321 193 58 4 27 216 17 205 2.14e-89 267
Msa1012440 AT5G38360.2 64.571 175 55 4 27 198 17 187 3.29e-78 238

Find 101 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTATTATATTTCCAATTT+AGG 0.160861 7_1:-17483653 Msa1012440:CDS
AGAATATCACATTTCCTATT+TGG 0.180206 7_1:+17480827 None:intergenic
GAGCTTGTCATTTCCTAAAT+TGG 0.182414 7_1:+17483640 None:intergenic
CCCTGTTGAAGTTCTTGTTT+TGG 0.233175 7_1:-17481708 Msa1012440:CDS
AGCAATCACTGCTAACAAAA+TGG 0.244270 7_1:+17480913 None:intergenic
GTTTGTTCTGTACCTCCTTC+TGG 0.269315 7_1:-17482842 Msa1012440:CDS
TGGAGGATCATGTTGTTAAA+AGG 0.281293 7_1:-17482481 Msa1012440:intron
CTGTACCTCCTTCTGGTAAT+AGG 0.292018 7_1:-17482835 Msa1012440:intron
AAAAGAGAAAGAAGAAAGAA+AGG 0.303821 7_1:-17486585 None:intergenic
TGTTATGCTCTTTCTTTGCT+TGG 0.318759 7_1:-17486190 Msa1012440:CDS
GTGCAGAAGTTATTCTTTCA+TGG 0.322299 7_1:-17480998 Msa1012440:CDS
TGCTCTTTCTTTGCTTGGAC+AGG 0.334651 7_1:-17486185 Msa1012440:intron
AGAACTTCAACAGGGAGATT+TGG 0.337654 7_1:+17481716 None:intergenic
TTCGGTTGCTGGTACACTTC+AGG 0.341976 7_1:-17483973 Msa1012440:intron
CCAGCTTTGGTATTTGTTCA+TGG 0.349881 7_1:-17486280 Msa1012440:CDS
TGCCCTTCCTTCAGATTGTA+AGG 0.354504 7_1:+17486397 None:intergenic
TGCTTCGCTTCCAGTTCCTT+TGG 0.356897 7_1:-17481741 Msa1012440:CDS
GAAACCAATTGCTGCCTTCA+AGG 0.360515 7_1:-17482664 Msa1012440:intron
AATTTATACCCGGGGCTTAG+AGG 0.382770 7_1:-17482875 Msa1012440:CDS
TTCAATTTAAATTACCTTGA+AGG 0.386562 7_1:+17482650 None:intergenic
CCCAAAACAAGAACTTCAAC+AGG 0.388064 7_1:+17481707 None:intergenic
ATCTTGCTCGGACATTCATT+TGG 0.398314 7_1:-17483689 Msa1012440:CDS
TGTGTCCAAAGTACTACTTT+TGG 0.398698 7_1:-17480601 Msa1012440:three_prime_UTR
AAAGAGAAAGAAGAAAGAAA+GGG 0.399357 7_1:-17486584 None:intergenic
TTATCATGCTGCTTGGTGTT+GGG 0.400202 7_1:-17486254 Msa1012440:CDS
GAACCAGAAGATTCGGTTGC+TGG 0.401583 7_1:-17483984 Msa1012440:CDS
GTTATCATGCTGCTTGGTGT+TGG 0.403568 7_1:-17486255 Msa1012440:CDS
GTTATTCTTTCATGGCTAAA+GGG 0.404056 7_1:-17480990 Msa1012440:CDS
AGTTATTCTTTCATGGCTAA+AGG 0.406540 7_1:-17480991 Msa1012440:CDS
AAAGAAAAGAAAAGAAAAGT+TGG 0.408927 7_1:+17480535 None:intergenic
CAATAGAGGAGGGTCCAAAT+AGG 0.417104 7_1:-17480841 Msa1012440:three_prime_UTR
TTTCACCAAGCTTCAAACTT+AGG 0.423284 7_1:-17480864 Msa1012440:three_prime_UTR
AAAGTAGCAGAGGAAATGTT+TGG 0.436375 7_1:-17480946 Msa1012440:three_prime_UTR
AAGTGAGTGTTCACCAGCTT+TGG 0.436567 7_1:-17486293 Msa1012440:CDS
AGATTTGGCACCAAAGGAAC+TGG 0.439812 7_1:+17481731 None:intergenic
TTGTCACCAGTTTGTGTTGA+AGG 0.440218 7_1:-17481062 Msa1012440:CDS
ATTACCTTGAAGGCAGCAAT+TGG 0.452074 7_1:+17482660 None:intergenic
ACATACAGCTTGGCTGCAAA+AGG 0.462187 7_1:-17482554 Msa1012440:CDS
GCAAGTCCTTCAACACAAAC+TGG 0.467319 7_1:+17481056 None:intergenic
AAATCCCAAAAGTAGTACTT+TGG 0.468505 7_1:+17480596 None:intergenic
ACATGATGTTGGACCCTTCA+TGG 0.469276 7_1:-17481028 Msa1012440:CDS
GTACCAGCAACCGAATCTTC+TGG 0.470652 7_1:+17483981 None:intergenic
GCAATCACTGCTAACAAAAT+GGG 0.473155 7_1:+17480914 None:intergenic
TTGCTCGGACATTCATTTGG+AGG 0.474558 7_1:-17483686 Msa1012440:CDS
AACTAATGAAAGAAAGTTCA+CGG 0.475580 7_1:-17481793 Msa1012440:CDS
TATGCAAAACTAAATAATAG+TGG 0.476433 7_1:+17480785 None:intergenic
AAGTGATGAACCAGAAGATT+CGG 0.482510 7_1:-17483991 Msa1012440:CDS
AAGCTCTCTTTCTCTTTGCA+AGG 0.494797 7_1:-17482525 Msa1012440:CDS
TATTGCCTAAGTTTGAAGCT+TGG 0.495708 7_1:+17480859 None:intergenic
TCTGCACCTTTCTCCCATGA+AGG 0.497523 7_1:+17481014 None:intergenic
AGTAGCAGTATTGCAGAGAA+AGG 0.504151 7_1:-17486434 Msa1012440:CDS
GCTTCAAACTTAGGCAATAG+AGG 0.517568 7_1:-17480855 Msa1012440:three_prime_UTR
CTAATAGAAAATTTATACCC+GGG 0.522357 7_1:-17482884 Msa1012440:intron
AAATGAATGTCCGAGCAAGA+TGG 0.524223 7_1:+17483691 None:intergenic
CTGCACCTTTCTCCCATGAA+GGG 0.526055 7_1:+17481015 None:intergenic
AAAGAAAAGTTGGATTGCAA+TGG 0.529625 7_1:+17480545 None:intergenic
CCATGAACAAATACCAAAGC+TGG 0.534811 7_1:+17486280 None:intergenic
TAACCAGATTGAGAAAAGAA+AGG 0.540026 7_1:+17486217 None:intergenic
TTGGACCCTTCATGGGAGAA+AGG 0.541489 7_1:-17481020 Msa1012440:CDS
ATGGAAGTTATCATGCTGCT+TGG 0.546302 7_1:-17486261 Msa1012440:CDS
CAATCGCCACCCATCTTGCT+CGG 0.547286 7_1:-17483701 Msa1012440:CDS
GTCCCTTACAATCTGAAGGA+AGG 0.548049 7_1:-17486400 Msa1012440:CDS
AGGACAGCTCCTCTAAGCCC+CGG 0.548358 7_1:+17482866 None:intergenic
AGGAAGAAAGAAAGTAGCAG+AGG 0.549000 7_1:-17480956 Msa1012440:three_prime_UTR
GCTTCCTTCTGGTTTGAACA+TGG 0.550424 7_1:-17486356 Msa1012440:CDS
AACTTTCTTAAATCAAACAA+TGG 0.551344 7_1:+17481767 None:intergenic
ACAACATGATCCTCCATTGT+GGG 0.558962 7_1:+17482488 None:intergenic
AATGAATGTCCGAGCAAGAT+GGG 0.561915 7_1:+17483692 None:intergenic
ACAGGGAGATTTGGCACCAA+AGG 0.562996 7_1:+17481725 None:intergenic
GTTGATTTATAGGATGCAGA+AGG 0.563173 7_1:-17481113 Msa1012440:intron
CTTGGTGTTGGGCTGAACAG+TGG 0.569616 7_1:-17486243 Msa1012440:CDS
TCCCTTACAATCTGAAGGAA+GGG 0.571655 7_1:-17486399 Msa1012440:CDS
TTGGTAGGTGACATACAGCT+TGG 0.571764 7_1:-17482564 Msa1012440:intron
ACTTCCATGTTCAAACCAGA+AGG 0.571906 7_1:+17486352 None:intergenic
CATGATGTTGGACCCTTCAT+GGG 0.577122 7_1:-17481027 Msa1012440:CDS
GCTAAAGGGTTTACACAAGT+AGG 0.582277 7_1:-17480976 Msa1012440:exon
TCAAACCAGAAGGAAGCTCA+TGG 0.582892 7_1:+17486362 None:intergenic
AACAACATGATCCTCCATTG+TGG 0.583467 7_1:+17482487 None:intergenic
GAGTGTCCCTTACAATCTGA+AGG 0.583633 7_1:-17486404 Msa1012440:CDS
AACTTTGAAAATTGAACACA+CGG 0.587008 7_1:+17486498 None:intergenic
GCCCTTCCTTCAGATTGTAA+GGG 0.590813 7_1:+17486398 None:intergenic
TCTAATAGAAAATTTATACC+CGG 0.591670 7_1:-17482885 Msa1012440:intron
CAAAACTAAATAATAGTGGT+CGG 0.594660 7_1:+17480789 None:intergenic
GTTGGTTACCTATTACCAGA+AGG 0.595739 7_1:+17482827 None:intergenic
GGACAGCTCCTCTAAGCCCC+GGG 0.596185 7_1:+17482867 None:intergenic
TAATAGAAAATTTATACCCG+GGG 0.599409 7_1:-17482883 Msa1012440:intron
GATGAAGCAACAGTGAGTAA+TGG 0.603215 7_1:-17486539 Msa1012440:exon
TGAGTAATGGCAATGACAGT+GGG 0.603814 7_1:-17486526 Msa1012440:exon
ACTTGCTCATGACATGATGT+TGG 0.605959 7_1:-17481039 Msa1012440:CDS
TTAGGAAATGACAAGCTCAA+AGG 0.607742 7_1:-17483635 Msa1012440:intron
TCAAACTTAGGCAATAGAGG+AGG 0.611515 7_1:-17480852 Msa1012440:three_prime_UTR
GACACACGCAACAGATGTTG+CGG 0.612430 7_1:-17483744 Msa1012440:CDS
GTGAGTAATGGCAATGACAG+TGG 0.635161 7_1:-17486527 Msa1012440:exon
CGCAAAGAATGACTTCATTG+TGG 0.636751 7_1:-17481684 Msa1012440:intron
GCAATGGAAACAAGAAGACA+AGG 0.658797 7_1:+17480561 None:intergenic
AAGGAGGTACAGAACAAACA+AGG 0.662545 7_1:+17482846 None:intergenic
GGTTACCTATTACCAGAAGG+AGG 0.668365 7_1:+17482830 None:intergenic
CAAACTTAGGCAATAGAGGA+GGG 0.668980 7_1:-17480851 Msa1012440:three_prime_UTR
GAATGTCCGAGCAAGATGGG+TGG 0.676336 7_1:+17483695 None:intergenic
CCAAAACAAGAACTTCAACA+GGG 0.707218 7_1:+17481708 None:intergenic
TGACAAACCATAAAACTGTG+CGG 0.747046 7_1:+17481079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATACTTAAATGTTT+AGG + chr7_1:17482821-17482840 None:intergenic 10.0%
!! AATAAAATTTCTTAAAATCT+GGG + chr7_1:17485044-17485063 None:intergenic 10.0%
!!! ATTACTTTTTTTTTTTTTTG+TGG - chr7_1:17486358-17486377 Msa1012440:CDS 10.0%
!! ATTAGATTAAACAAACAATT+TGG + chr7_1:17481518-17481537 None:intergenic 15.0%
!!! GTTCTTGAATTTTTTTTATA+AGG - chr7_1:17481554-17481573 Msa1012440:intron 15.0%
!!! TTTTTTATAAGGAAAATGTT+TGG - chr7_1:17481565-17481584 Msa1012440:intron 15.0%
!! ATAAACTCTTGTAAATAAAT+TGG + chr7_1:17482771-17482790 None:intergenic 15.0%
!!! TGATTTTGATATTATACTTT+TGG - chr7_1:17483036-17483055 Msa1012440:intron 15.0%
!! AAGATACTAAAAATTTAAGT+TGG + chr7_1:17484310-17484329 None:intergenic 15.0%
!!! TCTTTACTTTTTTTTATTAG+TGG - chr7_1:17484405-17484424 Msa1012440:intron 15.0%
!! AAAATATGTTTATAATTGAG+AGG - chr7_1:17484971-17484990 Msa1012440:intron 15.0%
!! CAATAAAATTTCTTAAAATC+TGG + chr7_1:17485045-17485064 None:intergenic 15.0%
!!! AAGAAATTTTATTGAAAGAA+TGG - chr7_1:17485051-17485070 Msa1012440:intron 15.0%
!! AAATATTAACAGAAAAATTC+AGG + chr7_1:17485292-17485311 None:intergenic 15.0%
!! AAAAAACTAACATAAATGTT+GGG - chr7_1:17485472-17485491 Msa1012440:intron 15.0%
!! ATTAATCAATAGCTTAATCA+AGG - chr7_1:17481044-17481063 Msa1012440:CDS 20.0%
!!! TATTTTTTTTTGTGTAAACC+TGG + chr7_1:17481372-17481391 None:intergenic 20.0%
!! ACAAAAAAAAATAGTCTCTT+TGG - chr7_1:17481379-17481398 Msa1012440:intron 20.0%
!! AAATCCAAAGATTATAATGA+TGG + chr7_1:17481424-17481443 None:intergenic 20.0%
!!! TAAACAAACTGATTTATGTT+TGG - chr7_1:17482139-17482158 Msa1012440:intron 20.0%
!! ACTAAAATAGACATAACTAA+AGG - chr7_1:17482198-17482217 Msa1012440:intron 20.0%
!! CTATTTCATATACTATAGTA+GGG + chr7_1:17482512-17482531 None:intergenic 20.0%
!! TCTATTTCATATACTATAGT+AGG + chr7_1:17482513-17482532 None:intergenic 20.0%
!!! TTTGATGTATTTTATGTGTT+TGG - chr7_1:17482537-17482556 Msa1012440:CDS 20.0%
!! GTATATTATTACATTTGAGA+AGG - chr7_1:17482831-17482850 Msa1012440:intron 20.0%
!! AATGATTCTAAACTAGTAAA+GGG + chr7_1:17483181-17483200 None:intergenic 20.0%
!! TATAACTTTCAATTTATGTG+TGG - chr7_1:17483205-17483224 Msa1012440:intron 20.0%
!! ATGACATACTTCATTATTAT+AGG - chr7_1:17483233-17483252 Msa1012440:intron 20.0%
!! TATAACTTTCAATTTATGTG+TGG - chr7_1:17483205-17483224 Msa1012440:intron 20.0%
!! ATGACATACTTCATTATTAT+AGG - chr7_1:17483233-17483252 Msa1012440:intron 20.0%
!! CAGTATTATATTTCCAATTT+AGG - chr7_1:17483463-17483482 Msa1012440:intron 20.0%
!! TTAACCATTATAGGATATAT+AGG + chr7_1:17483577-17483596 None:intergenic 20.0%
!! TCTAAACAATTAACCATTAT+AGG + chr7_1:17483586-17483605 None:intergenic 20.0%
!! TCTAATAGAAAATTTATACC+CGG - chr7_1:17484231-17484250 Msa1012440:intron 20.0%
!! TTCAATTTAAATTACCTTGA+AGG + chr7_1:17484469-17484488 None:intergenic 20.0%
!! AACTTTCTTAAATCAAACAA+TGG + chr7_1:17485352-17485371 None:intergenic 20.0%
!! GAAAAAACTAACATAAATGT+TGG - chr7_1:17485471-17485490 Msa1012440:intron 20.0%
!!! AAATTCGACAACTTTTTAAA+TGG - chr7_1:17485547-17485566 Msa1012440:intron 20.0%
!! TATGCAAAACTAAATAATAG+TGG + chr7_1:17486334-17486353 None:intergenic 20.0%
!!! ACTTTTTTTTTTTTTTGTGG+TGG - chr7_1:17486361-17486380 Msa1012440:CDS 20.0%
!! AACTTTGAAAATTGAACACA+CGG + chr7_1:17480621-17480640 None:intergenic 25.0%
! ATTAATCAATAGCTTAACCA+AGG - chr7_1:17481225-17481244 Msa1012440:intron 25.0%
! AATTGTAACACATTTCTCAA+AGG - chr7_1:17481764-17481783 Msa1012440:CDS 25.0%
!!! TTGTTTATTTCTGTTGTTAG+AGG - chr7_1:17481793-17481812 Msa1012440:CDS 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr7_1:17482095-17482114 Msa1012440:intron 25.0%
! TAAAGGAGAATTGATAAAGA+AGG - chr7_1:17482215-17482234 Msa1012440:intron 25.0%
! TAAAGAAGGAGAATTGATAA+AGG - chr7_1:17482229-17482248 Msa1012440:intron 25.0%
! AAAGAAGGAGAATTGATAAA+GGG - chr7_1:17482230-17482249 Msa1012440:intron 25.0%
!!! TTTTTGGCTAGAATTGATTT+TGG - chr7_1:17482405-17482424 Msa1012440:intron 25.0%
!! AAAATGATCTCTCCTTTTAA+AGG + chr7_1:17482664-17482683 None:intergenic 25.0%
! TTTACCAATTTGCAAAATTC+AGG - chr7_1:17482713-17482732 Msa1012440:intron 25.0%
!! TAATCCTGAATTTTGCAAAT+TGG + chr7_1:17482720-17482739 None:intergenic 25.0%
! GAAATTACAGTAACTTATCT+TGG - chr7_1:17482794-17482813 Msa1012440:intron 25.0%
! TATTGTAATGTTTAGTGTTG+TGG - chr7_1:17482917-17482936 Msa1012440:intron 25.0%
! ATTGTAATGTTTAGTGTTGT+GGG - chr7_1:17482918-17482937 Msa1012440:intron 25.0%
!!! ATTAAGACGGATTTTATACT+TGG - chr7_1:17482967-17482986 Msa1012440:intron 25.0%
! ATACATGACAGAACAATTTA+AGG + chr7_1:17483087-17483106 None:intergenic 25.0%
! GAATGATTCTAAACTAGTAA+AGG + chr7_1:17483182-17483201 None:intergenic 25.0%
! GTTATGTTCATATACTCTTA+TGG - chr7_1:17483321-17483340 Msa1012440:intron 25.0%
! CTTTCCTATATATCCTATAA+TGG - chr7_1:17483570-17483589 Msa1012440:intron 25.0%
! ACTCAATTATCGAAGAATTA+AGG + chr7_1:17483886-17483905 None:intergenic 25.0%
! AATTGTGATCTTTACTACAT+TGG + chr7_1:17483955-17483974 None:intergenic 25.0%
! CTAATAGAAAATTTATACCC+GGG - chr7_1:17484232-17484251 Msa1012440:intron 25.0%
! TAATAGAAAATTTATACCCG+GGG - chr7_1:17484233-17484252 Msa1012440:intron 25.0%
! ATCATTAAATATGACTACAC+TGG - chr7_1:17484371-17484390 Msa1012440:intron 25.0%
!!! TTTTTATTAGTGGACTAGTT+TGG - chr7_1:17484415-17484434 Msa1012440:intron 25.0%
! ATCATGAAAAGAATGATTCA+AGG + chr7_1:17484669-17484688 None:intergenic 25.0%
!!! TTTTTGAGTCAAATTGCAAT+AGG + chr7_1:17484697-17484716 None:intergenic 25.0%
!! ATAACTTTGTAAGTTGAGTT+AGG - chr7_1:17484788-17484807 Msa1012440:intron 25.0%
! GAGATGATATAAAGTAAGAA+TGG - chr7_1:17485135-17485154 Msa1012440:intron 25.0%
! AACTAATGAAAGAAAGTTCA+CGG - chr7_1:17485323-17485342 Msa1012440:intron 25.0%
! GGTTAATTAAGTGTTAGATT+CGG - chr7_1:17485590-17485609 Msa1012440:intron 25.0%
! GTTAATCATGTGCAAATTTA+AGG + chr7_1:17485668-17485687 None:intergenic 25.0%
! ACTAGATCATAAACCAATTT+GGG + chr7_1:17485741-17485760 None:intergenic 25.0%
! AACTAGATCATAAACCAATT+TGG + chr7_1:17485742-17485761 None:intergenic 25.0%
! ATCCTATAAATCAACAAATG+CGG + chr7_1:17485998-17486017 None:intergenic 25.0%
! AGAATATCACATTTCCTATT+TGG + chr7_1:17486292-17486311 None:intergenic 25.0%
! CAAAACTAAATAATAGTGGT+CGG + chr7_1:17486330-17486349 None:intergenic 25.0%
TAACCAGATTGAGAAAAGAA+AGG + chr7_1:17480902-17480921 None:intergenic 30.0%
TAAGAGTTTGAACACAATAC+TGG + chr7_1:17481090-17481109 None:intergenic 30.0%
AGTATTGTGTTCAAACTCTT+AGG - chr7_1:17481089-17481108 Msa1012440:CDS 30.0%
GTATTGTGTTCAAACTCTTA+GGG - chr7_1:17481090-17481109 Msa1012440:CDS 30.0%
GACACCATCATTATAATCTT+TGG - chr7_1:17481417-17481436 Msa1012440:intron 30.0%
ATGAGATGTTGAATGTTTGT+AGG - chr7_1:17481682-17481701 Msa1012440:intron 30.0%
TGAGATGTTGAATGTTTGTA+GGG - chr7_1:17481683-17481702 Msa1012440:intron 30.0%
AGTGGCATATGAAATTTATG+AGG - chr7_1:17481970-17481989 Msa1012440:intron 30.0%
GAATTGATAAAGGGCAATAA+AGG - chr7_1:17482239-17482258 Msa1012440:intron 30.0%
GGGCAATAAAGGAAAATAAT+AGG - chr7_1:17482250-17482269 Msa1012440:intron 30.0%
CAAAAACAACATGTTTGGTT+TGG + chr7_1:17482391-17482410 None:intergenic 30.0%
!!! CAAACCAAACATGTTGTTTT+TGG - chr7_1:17482389-17482408 Msa1012440:intron 30.0%
! GCACTGTTTATAATTGCTTT+TGG - chr7_1:17482427-17482446 Msa1012440:intron 30.0%
! ATGTTTCTACACTTTAGAGA+CGG + chr7_1:17482479-17482498 None:intergenic 30.0%
! GATGTATTTTATGTGTTTGG+AGG - chr7_1:17482540-17482559 Msa1012440:CDS 30.0%
ACTGATGCATTACAATGTTA+AGG - chr7_1:17482685-17482704 Msa1012440:CDS 30.0%
ATTTGAGAAGGAAAAATGTC+AGG - chr7_1:17482843-17482862 Msa1012440:CDS 30.0%
ATATGTTATTGACATGCCAT+AGG - chr7_1:17482874-17482893 Msa1012440:CDS 30.0%
CAATACATTGAACACAAACA+TGG + chr7_1:17482902-17482921 None:intergenic 30.0%
AAATCCGTCTTAATGTGTTA+GGG + chr7_1:17482961-17482980 None:intergenic 30.0%
AAAATCCGTCTTAATGTGTT+AGG + chr7_1:17482962-17482981 None:intergenic 30.0%
AAAAATGCAGATGACAATGA+TGG + chr7_1:17483009-17483028 None:intergenic 30.0%
CATATAGCATCAGATGAAAA+TGG + chr7_1:17483610-17483629 None:intergenic 30.0%
! TTTTCATCTGATGCTATATG+TGG - chr7_1:17483610-17483629 Msa1012440:intron 30.0%
TTTCATCTGATGCTATATGT+GGG - chr7_1:17483611-17483630 Msa1012440:intron 30.0%
AATGAGATATTCAACTCCAA+GGG + chr7_1:17483677-17483696 None:intergenic 30.0%
AAATGAGATATTCAACTCCA+AGG + chr7_1:17483678-17483697 None:intergenic 30.0%
TAGAAAAAGAAAACCCCTTA+TGG - chr7_1:17483732-17483751 Msa1012440:CDS 30.0%
GGAAACCATAATTTCTCTAT+TGG - chr7_1:17483811-17483830 Msa1012440:intron 30.0%
!! AATTGAGTTGACTATCTTTG+TGG - chr7_1:17483898-17483917 Msa1012440:intron 30.0%
! TGTATGTGAGTTTTCATTTC+TGG - chr7_1:17484176-17484195 Msa1012440:intron 30.0%
! GAATTTTCTGTATAGTGTGA+TGG - chr7_1:17484486-17484505 Msa1012440:intron 30.0%
GCATATAAGAAGACGAATAA+AGG + chr7_1:17484514-17484533 None:intergenic 30.0%
TATTTCACAGCATATCATGT+GGG + chr7_1:17484771-17484790 None:intergenic 30.0%
TTATTTCACAGCATATCATG+TGG + chr7_1:17484772-17484791 None:intergenic 30.0%
!!! CAATTTTTTAGCGAATGACT+AGG + chr7_1:17485084-17485103 None:intergenic 30.0%
ACTAGAACTTATCGATGTTA+AGG - chr7_1:17485113-17485132 Msa1012440:intron 30.0%
!!! TCATCGTCGATTATTTTTGT+TGG - chr7_1:17485240-17485259 Msa1012440:intron 30.0%
!!! TTGGTTTTGAAGCTTTTTGA+AGG - chr7_1:17485259-17485278 Msa1012440:intron 30.0%
TTAACAGAAAAATTCAGGCT+CGG + chr7_1:17485287-17485306 None:intergenic 30.0%
! GATTCGGTTAATAGATATAC+CGG - chr7_1:17485606-17485625 Msa1012440:intron 30.0%
ATTCGGTTAATAGATATACC+GGG - chr7_1:17485607-17485626 Msa1012440:intron 30.0%
GGTTAATGAAGTTTAGTAGA+TGG + chr7_1:17485647-17485666 None:intergenic 30.0%
TATTGACAGAGAAGATAACT+AGG + chr7_1:17485919-17485938 None:intergenic 30.0%
!! TACCGCATTTGTTGATTTAT+AGG - chr7_1:17485993-17486012 Msa1012440:intron 30.0%
AGTTATTCTTTCATGGCTAA+AGG - chr7_1:17486125-17486144 Msa1012440:intron 30.0%
GTTATTCTTTCATGGCTAAA+GGG - chr7_1:17486126-17486145 Msa1012440:intron 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG - chr7_1:17486365-17486384 Msa1012440:CDS 30.0%
GACAATGCATAATATATGCA+AGG + chr7_1:17486406-17486425 None:intergenic 30.0%
AAATCCCAAAAGTAGTACTT+TGG + chr7_1:17486523-17486542 None:intergenic 30.0%
CATTCTTCTTCTTCTTCTTC+TGG + chr7_1:17480796-17480815 None:intergenic 35.0%
! TTGCCTTTCTTTTCTCAATC+TGG - chr7_1:17480896-17480915 Msa1012440:three_prime_UTR 35.0%
TGTTATGCTCTTTCTTTGCT+TGG - chr7_1:17480926-17480945 Msa1012440:three_prime_UTR 35.0%
ACATACTCAAATGTCTCTTC+AGG - chr7_1:17481459-17481478 Msa1012440:intron 35.0%
CATACTCAAATGTCTCTTCA+GGG - chr7_1:17481460-17481479 Msa1012440:intron 35.0%
AGTGATGTGATAGATGTGAT+CGG - chr7_1:17481623-17481642 Msa1012440:intron 35.0%
GAGATGTTGAATGTTTGTAG+GGG - chr7_1:17481684-17481703 Msa1012440:intron 35.0%
AATGTTTGTAGGGGAGTAAA+GGG - chr7_1:17481693-17481712 Msa1012440:CDS 35.0%
TTCATTACAAGAGACTCAAG+TGG - chr7_1:17481952-17481971 Msa1012440:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr7_1:17482312-17482331 Msa1012440:intron 35.0%
CTAGCCAAAAACAACATGTT+TGG + chr7_1:17482396-17482415 None:intergenic 35.0%
! TGTTTCTACACTTTAGAGAC+GGG + chr7_1:17482478-17482497 None:intergenic 35.0%
TATACTATAGTAGGGACAAC+TGG + chr7_1:17482504-17482523 None:intergenic 35.0%
TGGCACATTAAATGAACATG+TGG + chr7_1:17482633-17482652 None:intergenic 35.0%
AAGTGATGAACCAGAAGATT+CGG - chr7_1:17483125-17483144 Msa1012440:intron 35.0%
TTCTAAACTAGTAAAGGGAG+AGG + chr7_1:17483176-17483195 None:intergenic 35.0%
! GAGCTTGTCATTTCCTAAAT+TGG + chr7_1:17483479-17483498 None:intergenic 35.0%
TTAGGAAATGACAAGCTCAA+AGG - chr7_1:17483481-17483500 Msa1012440:intron 35.0%
GCACTCGTTTGTTTGAAAAT+TGG - chr7_1:17483529-17483548 Msa1012440:intron 35.0%
TTGGATCTGGTATACCATAA+GGG + chr7_1:17483749-17483768 None:intergenic 35.0%
GCACTCCAATAGAGAAATTA+TGG + chr7_1:17483819-17483838 None:intergenic 35.0%
!! TACCAAATAGTGGATTGAAC+AGG + chr7_1:17484538-17484557 None:intergenic 35.0%
TGTTCAATCCACTATTTGGT+AGG - chr7_1:17484537-17484556 Msa1012440:intron 35.0%
TGGAGGATCATGTTGTTAAA+AGG - chr7_1:17484635-17484654 Msa1012440:intron 35.0%
! GTTGCTTTGTGAAACATTGA+TGG - chr7_1:17484720-17484739 Msa1012440:intron 35.0%
! AAACATTGATGGTAGTCACT+AGG - chr7_1:17484731-17484750 Msa1012440:intron 35.0%
CCGATACCATCTGAAAATTT+GGG + chr7_1:17484839-17484858 None:intergenic 35.0%
! CCCAAATTTTCAGATGGTAT+CGG - chr7_1:17484836-17484855 Msa1012440:intron 35.0%
TCCGATACCATCTGAAAATT+TGG + chr7_1:17484840-17484859 None:intergenic 35.0%
! TATTTTCAGACCAGATCATG+TGG + chr7_1:17484957-17484976 None:intergenic 35.0%
AATGGAAGACATTTAGCAGT+GGG - chr7_1:17485153-17485172 Msa1012440:intron 35.0%
TCGACGATGAAAACATATCA+TGG + chr7_1:17485230-17485249 None:intergenic 35.0%
CCAAAACAAGAACTTCAACA+GGG + chr7_1:17485411-17485430 None:intergenic 35.0%
!!! CCTGTTGAAGTTCTTGTTTT+GGG - chr7_1:17485409-17485428 Msa1012440:intron 35.0%
CATTGTGGTAAGCTCTATAA+TGG - chr7_1:17485447-17485466 Msa1012440:intron 35.0%
! ATGGTTAATAAGTTGACACC+CGG + chr7_1:17485628-17485647 None:intergenic 35.0%
AAACTTGACAACTTCTTACG+TGG + chr7_1:17485712-17485731 None:intergenic 35.0%
CGTAAGAAGTTGTCAAGTTT+AGG - chr7_1:17485712-17485731 Msa1012440:intron 35.0%
GAGCACTTTCTACTTCTAAT+AGG + chr7_1:17485770-17485789 None:intergenic 35.0%
ATTGAATGACTTTGCTTCGT+CGG - chr7_1:17485828-17485847 Msa1012440:intron 35.0%
CAAATGCGGTAAACTACATT+AGG + chr7_1:17485984-17486003 None:intergenic 35.0%
! GTTGATTTATAGGATGCAGA+AGG - chr7_1:17486003-17486022 Msa1012440:intron 35.0%
! AAAGAAACCGCACAGTTTTA+TGG - chr7_1:17486030-17486049 Msa1012440:intron 35.0%
TGACAAACCATAAAACTGTG+CGG + chr7_1:17486040-17486059 None:intergenic 35.0%
GTGCAGAAGTTATTCTTTCA+TGG - chr7_1:17486118-17486137 Msa1012440:intron 35.0%
AAAGTAGCAGAGGAAATGTT+TGG - chr7_1:17486170-17486189 Msa1012440:intron 35.0%
GCAATCACTGCTAACAAAAT+GGG + chr7_1:17486205-17486224 None:intergenic 35.0%
AGCAATCACTGCTAACAAAA+TGG + chr7_1:17486206-17486225 None:intergenic 35.0%
TTTCACCAAGCTTCAAACTT+AGG - chr7_1:17486252-17486271 Msa1012440:CDS 35.0%
! TATTGCCTAAGTTTGAAGCT+TGG + chr7_1:17486260-17486279 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG - chr7_1:17486366-17486385 Msa1012440:CDS 35.0%
CATAATATATGCAAGGTCCA+GGG + chr7_1:17486399-17486418 None:intergenic 35.0%
!! TGTGTCCAAAGTACTACTTT+TGG - chr7_1:17486515-17486534 Msa1012440:CDS 35.0%
!! GTGTCCAAAGTACTACTTTT+GGG - chr7_1:17486516-17486535 Msa1012440:CDS 35.0%
GATGAAGCAACAGTGAGTAA+TGG - chr7_1:17480577-17480596 Msa1012440:three_prime_UTR 40.0%
TGAGTAATGGCAATGACAGT+GGG - chr7_1:17480590-17480609 Msa1012440:three_prime_UTR 40.0%
AGTAGCAGTATTGCAGAGAA+AGG - chr7_1:17480682-17480701 Msa1012440:intron 40.0%
TCCCTTACAATCTGAAGGAA+GGG - chr7_1:17480717-17480736 Msa1012440:intron 40.0%
! ATTTTCCATGAGCTTCCTTC+TGG - chr7_1:17480749-17480768 Msa1012440:intron 40.0%
ACTTCCATGTTCAAACCAGA+AGG + chr7_1:17480767-17480786 None:intergenic 40.0%
CCATGAACAAATACCAAAGC+TGG + chr7_1:17480839-17480858 None:intergenic 40.0%
! CCAGCTTTGGTATTTGTTCA+TGG - chr7_1:17480836-17480855 Msa1012440:three_prime_UTR 40.0%
ATGGAAGTTATCATGCTGCT+TGG - chr7_1:17480855-17480874 Msa1012440:three_prime_UTR 40.0%
!! TTATCATGCTGCTTGGTGTT+GGG - chr7_1:17480862-17480881 Msa1012440:three_prime_UTR 40.0%
TGCAGCAGTGTTAAAACTCT+TGG - chr7_1:17481273-17481292 Msa1012440:intron 40.0%
GCAGCAGTGTTAAAACTCTT+GGG - chr7_1:17481274-17481293 Msa1012440:intron 40.0%
CAGCAGTGTTAAAACTCTTG+GGG - chr7_1:17481275-17481294 Msa1012440:intron 40.0%
TGAGAATGCTACACACATTG+AGG - chr7_1:17481490-17481509 Msa1012440:intron 40.0%
GAGAATGCTACACACATTGA+GGG - chr7_1:17481491-17481510 Msa1012440:intron 40.0%
TATCACATCACTCTCTCTCA+AGG + chr7_1:17481615-17481634 None:intergenic 40.0%
GAATGTTTGTAGGGGAGTAA+AGG - chr7_1:17481692-17481711 Msa1012440:CDS 40.0%
ACGAAACACGTATACGATGT+AGG - chr7_1:17481851-17481870 Msa1012440:intron 40.0%
AGCTAGGATTTGTAGCTTCA+TGG - chr7_1:17482328-17482347 Msa1012440:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG - chr7_1:17482342-17482361 Msa1012440:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG - chr7_1:17482345-17482364 Msa1012440:intron 40.0%
TGATGTGAGATTCACGTAGA+AGG - chr7_1:17482607-17482626 Msa1012440:intron 40.0%
!! TCCTTTTAAAGGCTACGATG+TGG + chr7_1:17482653-17482672 None:intergenic 40.0%
AGAAGGAAAAATGTCAGGAG+AGG - chr7_1:17482848-17482867 Msa1012440:CDS 40.0%
GAAGGAAAAATGTCAGGAGA+GGG - chr7_1:17482849-17482868 Msa1012440:CDS 40.0%
AAGGAAAAATGTCAGGAGAG+GGG - chr7_1:17482850-17482869 Msa1012440:CDS 40.0%
TGTTTAGTGTTGTGGGATTG+TGG - chr7_1:17482925-17482944 Msa1012440:intron 40.0%
GCATCCCTAACACATTAAGA+CGG - chr7_1:17482954-17482973 Msa1012440:intron 40.0%
AATGCAGATGACAATGATGG+TGG + chr7_1:17483006-17483025 None:intergenic 40.0%
TCATGTATTCTACATGCGCA+GGG - chr7_1:17483099-17483118 Msa1012440:intron 40.0%
AATGAATGTCCGAGCAAGAT+GGG + chr7_1:17483427-17483446 None:intergenic 40.0%
AAATGAATGTCCGAGCAAGA+TGG + chr7_1:17483428-17483447 None:intergenic 40.0%
ATCTTGCTCGGACATTCATT+TGG - chr7_1:17483427-17483446 Msa1012440:intron 40.0%
!! TCAAAGGTACTTCCTGATTC+TGG - chr7_1:17483497-17483516 Msa1012440:intron 40.0%
TGCATGAATAAGCCAGAATC+AGG + chr7_1:17483512-17483531 None:intergenic 40.0%
TGGATCTGGTATACCATAAG+GGG + chr7_1:17483748-17483767 None:intergenic 40.0%
GTTGGATCTGGTATACCATA+AGG + chr7_1:17483750-17483769 None:intergenic 40.0%
ATGGTATACCAGATCCAACT+CGG - chr7_1:17483751-17483770 Msa1012440:intron 40.0%
TTTGTCCATCTGTCTGATGA+AGG - chr7_1:17483842-17483861 Msa1012440:intron 40.0%
TTGTCCATCTGTCTGATGAA+GGG - chr7_1:17483843-17483862 Msa1012440:intron 40.0%
TGCATGCACGTTAGATCATA+GGG + chr7_1:17484017-17484036 None:intergenic 40.0%
ATCTAACGTGCATGCAGAAT+TGG - chr7_1:17484021-17484040 Msa1012440:intron 40.0%
! AAGGAGGTACAGAACAAACA+AGG + chr7_1:17484273-17484292 None:intergenic 40.0%
GTTGGTTACCTATTACCAGA+AGG + chr7_1:17484292-17484311 None:intergenic 40.0%
ATTACCTTGAAGGCAGCAAT+TGG + chr7_1:17484459-17484478 None:intergenic 40.0%
CACCTGTTCAATCCACTATT+TGG - chr7_1:17484533-17484552 Msa1012440:intron 40.0%
GTATGTCACCTACCAAATAG+TGG + chr7_1:17484548-17484567 None:intergenic 40.0%
AAGCTCTCTTTCTCTTTGCA+AGG - chr7_1:17484591-17484610 Msa1012440:intron 40.0%
! GACATTTTTCTCACCCACAA+TGG - chr7_1:17484615-17484634 Msa1012440:intron 40.0%
! ATTTTTCTCACCCACAATGG+AGG - chr7_1:17484618-17484637 Msa1012440:intron 40.0%
ACAACATGATCCTCCATTGT+GGG + chr7_1:17484631-17484650 None:intergenic 40.0%
AACAACATGATCCTCCATTG+TGG + chr7_1:17484632-17484651 None:intergenic 40.0%
! CTTTGTAAGTTGAGTTAGGC+CGG - chr7_1:17484792-17484811 Msa1012440:intron 40.0%
ATCGGAGTCTATTCAAGATC+CGG - chr7_1:17484854-17484873 Msa1012440:intron 40.0%
AAGCTCAAGATATCTAGTCC+TGG - chr7_1:17484906-17484925 Msa1012440:intron 40.0%
AGCTCAAGATATCTAGTCCT+GGG - chr7_1:17484907-17484926 Msa1012440:intron 40.0%
AAAACTGACGTGTAAGGTGA+GGG + chr7_1:17485000-17485019 None:intergenic 40.0%
GAATGGAAGACATTTAGCAG+TGG - chr7_1:17485152-17485171 Msa1012440:intron 40.0%
ATGGAAGACATTTAGCAGTG+GGG - chr7_1:17485154-17485173 Msa1012440:intron 40.0%
!!! AATGGAAGGTTTTGGTGTCA+TGG - chr7_1:17485181-17485200 Msa1012440:intron 40.0%
!!! AAGGTTTTGGTGTCATGGAT+TGG - chr7_1:17485186-17485205 Msa1012440:intron 40.0%
AGAACTTCAACAGGGAGATT+TGG + chr7_1:17485403-17485422 None:intergenic 40.0%
!! CCCTGTTGAAGTTCTTGTTT+TGG - chr7_1:17485408-17485427 Msa1012440:intron 40.0%
CCCAAAACAAGAACTTCAAC+AGG + chr7_1:17485412-17485431 None:intergenic 40.0%
CGCAAAGAATGACTTCATTG+TGG - chr7_1:17485432-17485451 Msa1012440:intron 40.0%
CAAGTTTAGGTGTCCCAAAT+TGG - chr7_1:17485725-17485744 Msa1012440:intron 40.0%
AAACTGAATTCCTATCCGCT+AGG + chr7_1:17485801-17485820 None:intergenic 40.0%
AAGCACTTCATTCTCATCCT+TGG + chr7_1:17485860-17485879 None:intergenic 40.0%
TTGTCACCAGTTTGTGTTGA+AGG - chr7_1:17486054-17486073 Msa1012440:intron 40.0%
ACTTGCTCATGACATGATGT+TGG - chr7_1:17486077-17486096 Msa1012440:intron 40.0%
GCTAAAGGGTTTACACAAGT+AGG - chr7_1:17486140-17486159 Msa1012440:intron 40.0%
AGGAAGAAAGAAAGTAGCAG+AGG - chr7_1:17486160-17486179 Msa1012440:intron 40.0%
GCTTCAAACTTAGGCAATAG+AGG - chr7_1:17486261-17486280 Msa1012440:CDS 40.0%
TCAAACTTAGGCAATAGAGG+AGG - chr7_1:17486264-17486283 Msa1012440:CDS 40.0%
CAAACTTAGGCAATAGAGGA+GGG - chr7_1:17486265-17486284 Msa1012440:CDS 40.0%
GCATAATATATGCAAGGTCC+AGG + chr7_1:17486400-17486419 None:intergenic 40.0%
!!! CTACTTTTGGGATTTCTAGC+TGG - chr7_1:17486528-17486547 Msa1012440:exon 40.0%
GCAATGGAAACAAGAAGACA+AGG + chr7_1:17486558-17486577 None:intergenic 40.0%
GTGAGTAATGGCAATGACAG+TGG - chr7_1:17480589-17480608 Msa1012440:three_prime_UTR 45.0%
GAGTGTCCCTTACAATCTGA+AGG - chr7_1:17480712-17480731 Msa1012440:intron 45.0%
GTCCCTTACAATCTGAAGGA+AGG - chr7_1:17480716-17480735 Msa1012440:intron 45.0%
GCCCTTCCTTCAGATTGTAA+GGG + chr7_1:17480721-17480740 None:intergenic 45.0%
TGCCCTTCCTTCAGATTGTA+AGG + chr7_1:17480722-17480741 None:intergenic 45.0%
TCAAACCAGAAGGAAGCTCA+TGG + chr7_1:17480757-17480776 None:intergenic 45.0%
!! GCTTCCTTCTGGTTTGAACA+TGG - chr7_1:17480760-17480779 Msa1012440:intron 45.0%
AAGTGAGTGTTCACCAGCTT+TGG - chr7_1:17480823-17480842 Msa1012440:three_prime_UTR 45.0%
!! GTTATCATGCTGCTTGGTGT+TGG - chr7_1:17480861-17480880 Msa1012440:three_prime_UTR 45.0%
TGCTCTTTCTTTGCTTGGAC+AGG - chr7_1:17480931-17480950 Msa1012440:three_prime_UTR 45.0%
TCAAGGTCCTAGTTCGAACT+TGG - chr7_1:17481061-17481080 Msa1012440:CDS 45.0%
CTGGATTCCAAGTTCGAACT+AGG + chr7_1:17481071-17481090 None:intergenic 45.0%
CAATAGCTTAACCAAGGTCC+TGG - chr7_1:17481231-17481250 Msa1012440:intron 45.0%
! GAGCCTTATGAGACCCAAAT+GGG + chr7_1:17481312-17481331 None:intergenic 45.0%
!! GATGTGATCGGTTGATGATG+TGG - chr7_1:17481635-17481654 Msa1012440:intron 45.0%
!! TGATCGGTTGATGATGTGGT+TGG - chr7_1:17481639-17481658 Msa1012440:intron 45.0%
ACACGTATACGATGTAGGTG+TGG - chr7_1:17481856-17481875 Msa1012440:intron 45.0%
CACGTATACGATGTAGGTGT+GGG - chr7_1:17481857-17481876 Msa1012440:intron 45.0%
CACTCTTTCTCGTGTGTGTT+TGG - chr7_1:17482003-17482022 Msa1012440:intron 45.0%
AGCCAAAAGCTGAACCAAAC+AGG - chr7_1:17482452-17482471 Msa1012440:intron 45.0%
GCCACATCGTAGCCTTTAAA+AGG - chr7_1:17482649-17482668 Msa1012440:intron 45.0%
GAACACAAACATGGAGCCTA+TGG + chr7_1:17482893-17482912 None:intergenic 45.0%
GTCATGTATTCTACATGCGC+AGG - chr7_1:17483098-17483117 Msa1012440:intron 45.0%
CGTGTGTCTACTGTAGAACA+TGG + chr7_1:17483360-17483379 None:intergenic 45.0%
TTGCTCGGACATTCATTTGG+AGG - chr7_1:17483430-17483449 Msa1012440:intron 45.0%
! AACTACTTCCGAGTTGGATC+TGG + chr7_1:17483762-17483781 None:intergenic 45.0%
GTGATGAACTACTTCCGAGT+TGG + chr7_1:17483768-17483787 None:intergenic 45.0%
GGAAGTAGTTCATCACCTGT+GGG - chr7_1:17483772-17483791 Msa1012440:intron 45.0%
TTCTCCCTTCATCAGACAGA+TGG + chr7_1:17483850-17483869 None:intergenic 45.0%
GACAAGTGAGATCGTCACAT+CGG + chr7_1:17483994-17484013 None:intergenic 45.0%
GCATGCACGTTAGATCATAG+GGG + chr7_1:17484016-17484035 None:intergenic 45.0%
CTGCATGCACGTTAGATCAT+AGG + chr7_1:17484018-17484037 None:intergenic 45.0%
TATTGTGTGATTGCAGCCTC+TGG - chr7_1:17484085-17484104 Msa1012440:intron 45.0%
ATTGTGTGATTGCAGCCTCT+GGG - chr7_1:17484086-17484105 Msa1012440:intron 45.0%
CAAACGAGTGTATGTCTGTG+TGG + chr7_1:17484129-17484148 None:intergenic 45.0%
AATTTATACCCGGGGCTTAG+AGG - chr7_1:17484241-17484260 Msa1012440:intron 45.0%
GTTTGTTCTGTACCTCCTTC+TGG - chr7_1:17484274-17484293 Msa1012440:intron 45.0%
CTGTACCTCCTTCTGGTAAT+AGG - chr7_1:17484281-17484300 Msa1012440:intron 45.0%
GGTTACCTATTACCAGAAGG+AGG + chr7_1:17484289-17484308 None:intergenic 45.0%
GAAACCAATTGCTGCCTTCA+AGG - chr7_1:17484452-17484471 Msa1012440:intron 45.0%
TTGGTAGGTGACATACAGCT+TGG - chr7_1:17484552-17484571 Msa1012440:intron 45.0%
ACATACAGCTTGGCTGCAAA+AGG - chr7_1:17484562-17484581 Msa1012440:intron 45.0%
GCGTACTCACTCTACAAAAC+CGG + chr7_1:17484814-17484833 None:intergenic 45.0%
! ACGCAGCCCAAATTTTCAGA+TGG - chr7_1:17484830-17484849 Msa1012440:intron 45.0%
GAGTCTATTCAAGATCCGGT+TGG - chr7_1:17484858-17484877 Msa1012440:intron 45.0%
GCTACCACTATTAGGCCATT+CGG - chr7_1:17484880-17484899 Msa1012440:intron 45.0%
CTACCACTATTAGGCCATTC+GGG - chr7_1:17484881-17484900 Msa1012440:intron 45.0%
TATCTTGAGCTTGACCCGAA+TGG + chr7_1:17484898-17484917 None:intergenic 45.0%
TCAAGATATCTAGTCCTGGG+CGG - chr7_1:17484910-17484929 Msa1012440:intron 45.0%
AGTTCCACATCCACATGATC+TGG - chr7_1:17484944-17484963 Msa1012440:intron 45.0%
CAAAACTGACGTGTAAGGTG+AGG + chr7_1:17485001-17485020 None:intergenic 45.0%
CGCTACAAAACTGACGTGTA+AGG + chr7_1:17485006-17485025 None:intergenic 45.0%
ATTTAGCAGTGGGGCTAGAA+TGG - chr7_1:17485163-17485182 Msa1012440:intron 45.0%
!!! GTTTTGGTGTCATGGATTGG+TGG - chr7_1:17485189-17485208 Msa1012440:intron 45.0%
AGATTTGGCACCAAAGGAAC+TGG + chr7_1:17485388-17485407 None:intergenic 45.0%
GTTAGCGTATTTCACACACG+TGG + chr7_1:17485690-17485709 None:intergenic 45.0%
TCCTATCCGCTAGGATTCTA+GGG + chr7_1:17485792-17485811 None:intergenic 45.0%
TTCCTATCCGCTAGGATTCT+AGG + chr7_1:17485793-17485812 None:intergenic 45.0%
GCAAGTCCTTCAACACAAAC+TGG + chr7_1:17486063-17486082 None:intergenic 45.0%
ACATGATGTTGGACCCTTCA+TGG - chr7_1:17486088-17486107 Msa1012440:intron 45.0%
CATGATGTTGGACCCTTCAT+GGG - chr7_1:17486089-17486108 Msa1012440:intron 45.0%
CAATAGAGGAGGGTCCAAAT+AGG - chr7_1:17486275-17486294 Msa1012440:CDS 45.0%
GTGAGCTTAGCTCAGTTGTA+GGG + chr7_1:17486428-17486447 None:intergenic 45.0%
! AGGGAGATTTTGCGCCCATT+TGG - chr7_1:17481109-17481128 Msa1012440:intron 50.0%
! GGGAGATTTTGCGCCCATTT+GGG - chr7_1:17481110-17481129 Msa1012440:intron 50.0%
! CATTATCCCTCGAGCCTTGT+GGG + chr7_1:17481137-17481156 None:intergenic 50.0%
TCCTGGTCGAATCCAGCTTT+GGG - chr7_1:17481248-17481267 Msa1012440:intron 50.0%
CCTTATGAGACCCAAATGGG+CGG + chr7_1:17481309-17481328 None:intergenic 50.0%
! CGAGCCTTATGAGACCCAAA+TGG + chr7_1:17481313-17481332 None:intergenic 50.0%
TTTGGGTCTCATAAGGCTCG+AGG - chr7_1:17481313-17481332 Msa1012440:intron 50.0%
TTGGGTCTCATAAGGCTCGA+GGG - chr7_1:17481314-17481333 Msa1012440:intron 50.0%
ATGTAGGTGTGGGTGCGATA+TGG - chr7_1:17481867-17481886 Msa1012440:intron 50.0%
GTGGGTGCGATATGGATACA+TGG - chr7_1:17481875-17481894 Msa1012440:intron 50.0%
!! GGCCTGTTTGGTTCAGCTTT+TGG + chr7_1:17482457-17482476 None:intergenic 50.0%
! ACTTTAGAGACGGGCCTGTT+TGG + chr7_1:17482469-17482488 None:intergenic 50.0%
! GAACCAGAAGATTCGGTTGC+TGG - chr7_1:17483132-17483151 Msa1012440:intron 50.0%
GTACCAGCAACCGAATCTTC+TGG + chr7_1:17483138-17483157 None:intergenic 50.0%
TTCGGTTGCTGGTACACTTC+AGG - chr7_1:17483143-17483162 Msa1012440:intron 50.0%
GACACACGCAACAGATGTTG+CGG - chr7_1:17483372-17483391 Msa1012440:intron 50.0%
CGGAAGTAGTTCATCACCTG+TGG - chr7_1:17483771-17483790 Msa1012440:intron 50.0%
AGTTCATCACCTGTGGGATC+TGG - chr7_1:17483778-17483797 Msa1012440:intron 50.0%
CACTATCAACCAGATCCCAC+AGG + chr7_1:17483790-17483809 None:intergenic 50.0%
!! GTGGGATCTGGTTGATAGTG+AGG - chr7_1:17483790-17483809 Msa1012440:intron 50.0%
TGTACAAGTTCGCGAGAAGC+TGG - chr7_1:17483928-17483947 Msa1012440:intron 50.0%
! TCCGGTTGGCTACCACTATT+AGG - chr7_1:17484872-17484891 Msa1012440:intron 50.0%
GCCTAATAGTGGTAGCCAAC+CGG + chr7_1:17484876-17484895 None:intergenic 50.0%
TGACCCGAATGGCCTAATAG+TGG + chr7_1:17484887-17484906 None:intergenic 50.0%
CAAGATATCTAGTCCTGGGC+GGG - chr7_1:17484911-17484930 Msa1012440:intron 50.0%
CAGACCAGATCATGTGGATG+TGG + chr7_1:17484951-17484970 None:intergenic 50.0%
! GGGGCTAGAATGGAAGGTTT+TGG - chr7_1:17485173-17485192 Msa1012440:intron 50.0%
TGCTTCGCTTCCAGTTCCTT+TGG - chr7_1:17485375-17485394 Msa1012440:intron 50.0%
ACAGGGAGATTTGGCACCAA+AGG + chr7_1:17485394-17485413 None:intergenic 50.0%
GATCACGTAGTTCGCACAAG+TGG - chr7_1:17485569-17485588 Msa1012440:intron 50.0%
AGTGCTCCCTAGAATCCTAG+CGG - chr7_1:17485783-17485802 Msa1012440:intron 50.0%
! TCCCTAGAATCCTAGCGGAT+AGG - chr7_1:17485788-17485807 Msa1012440:intron 50.0%
TTGGACCCTTCATGGGAGAA+AGG - chr7_1:17486096-17486115 Msa1012440:intron 50.0%
CTGCACCTTTCTCCCATGAA+GGG + chr7_1:17486104-17486123 None:intergenic 50.0%
TCTGCACCTTTCTCCCATGA+AGG + chr7_1:17486105-17486124 None:intergenic 50.0%
AAGGTCCAGGGTTCAAATCC+CGG + chr7_1:17486387-17486406 None:intergenic 50.0%
CGTGAGCTTAGCTCAGTTGT+AGG + chr7_1:17486429-17486448 None:intergenic 50.0%
!! CTTGGTGTTGGGCTGAACAG+TGG - chr7_1:17480873-17480892 Msa1012440:three_prime_UTR 55.0%
! GAGCCTTGTGGGACCCAAAT+GGG + chr7_1:17481126-17481145 None:intergenic 55.0%
CCATTATCCCTCGAGCCTTG+TGG + chr7_1:17481138-17481157 None:intergenic 55.0%
CCACAAGGCTCGAGGGATAA+TGG - chr7_1:17481135-17481154 Msa1012440:intron 55.0%
GTCCTGGTCGAATCCAGCTT+TGG - chr7_1:17481247-17481266 Msa1012440:intron 55.0%
GGAGAGTTTGCCGCCCATTT+GGG - chr7_1:17481296-17481315 Msa1012440:intron 55.0%
CCGCCCATTTGGGTCTCATA+AGG - chr7_1:17481306-17481325 Msa1012440:intron 55.0%
CAATCGCCACCCATCTTGCT+CGG - chr7_1:17483415-17483434 Msa1012440:intron 55.0%
GAATGTCCGAGCAAGATGGG+TGG + chr7_1:17483424-17483443 None:intergenic 55.0%
CACATGTACGCACACACCCT+TGG - chr7_1:17483658-17483677 Msa1012440:CDS 55.0%
AGCAGTGGGGCTAGAATGGA+AGG - chr7_1:17485167-17485186 Msa1012440:intron 55.0%
! CGAGCCTTGTGGGACCCAAA+TGG + chr7_1:17481127-17481146 None:intergenic 60.0%
TTTGGGTCCCACAAGGCTCG+AGG - chr7_1:17481127-17481146 Msa1012440:intron 60.0%
TTGGGTCCCACAAGGCTCGA+GGG - chr7_1:17481128-17481147 Msa1012440:intron 60.0%
AGTCTTCGCAGTTGCGTGCG+CGG - chr7_1:17481161-17481180 Msa1012440:intron 60.0%
GCTGGATTCGACCAGGACCT+TGG + chr7_1:17481245-17481264 None:intergenic 60.0%
GCCCAAAGCTGGATTCGACC+AGG + chr7_1:17481252-17481271 None:intergenic 60.0%
CACTGCTGCATGCCCAAAGC+TGG + chr7_1:17481263-17481282 None:intergenic 60.0%
GGGAGAGTTTGCCGCCCATT+TGG - chr7_1:17481295-17481314 Msa1012440:intron 60.0%
AGTCTTCGTAGTTGCGCGCG+TGG - chr7_1:17481340-17481359 Msa1012440:intron 60.0%
TGTGATTGCAGCCTCTGGGC+AGG - chr7_1:17484090-17484109 Msa1012440:intron 60.0%
GTGATTGCAGCCTCTGGGCA+GGG - chr7_1:17484091-17484110 Msa1012440:intron 60.0%
AGGACAGCTCCTCTAAGCCC+CGG + chr7_1:17484253-17484272 None:intergenic 60.0%
ACTGTCAACACTTCCCGCCC+AGG + chr7_1:17484927-17484946 None:intergenic 60.0%
!! TGCTTCGTCGGCTCGAACCA+AGG - chr7_1:17485840-17485859 Msa1012440:intron 60.0%
GCGCCCATTTGGGTCCCACA+AGG - chr7_1:17481120-17481139 Msa1012440:intron 65.0%
CTTCGTAGTTGCGCGCGTGG+AGG - chr7_1:17481343-17481362 Msa1012440:intron 65.0%
TTGCGCGCGTGGAGGATACC+AGG - chr7_1:17481351-17481370 Msa1012440:intron 65.0%
TTCCACTCGTCCCTGCCCAG+AGG + chr7_1:17484104-17484123 None:intergenic 65.0%
GGACAGCTCCTCTAAGCCCC+GGG + chr7_1:17484252-17484271 None:intergenic 65.0%
GGTGGCCGGGATTTGAACCC+TGG - chr7_1:17486379-17486398 Msa1012440:CDS 65.0%
CTTCGCAGTTGCGTGCGCGG+AGG - chr7_1:17481164-17481183 Msa1012440:intron 70.0%
AGCCTCTGGGCAGGGACGAG+TGG - chr7_1:17484099-17484118 Msa1012440:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17480546 17486592 17480546 ID=Msa1012440;Name=Msa1012440
chr7_1 mRNA 17480546 17486592 17480546 ID=Msa1012440-mRNA-1;Parent=Msa1012440;Name=Msa1012440-mRNA-1;_AED=0.21;_eAED=0.21;_QI=50|1|1|1|0.87|0.77|9|316|342
chr7_1 exon 17480546 17480664 17480546 ID=Msa1012440-mRNA-1:exon:4425;Parent=Msa1012440-mRNA-1
chr7_1 exon 17480780 17481123 17480780 ID=Msa1012440-mRNA-1:exon:4424;Parent=Msa1012440-mRNA-1
chr7_1 exon 17481685 17481823 17481685 ID=Msa1012440-mRNA-1:exon:4423;Parent=Msa1012440-mRNA-1
chr7_1 exon 17482482 17482579 17482482 ID=Msa1012440-mRNA-1:exon:4422;Parent=Msa1012440-mRNA-1
chr7_1 exon 17482665 17482713 17482665 ID=Msa1012440-mRNA-1:exon:4421;Parent=Msa1012440-mRNA-1
chr7_1 exon 17482836 17482899 17482836 ID=Msa1012440-mRNA-1:exon:4420;Parent=Msa1012440-mRNA-1
chr7_1 exon 17483636 17483765 17483636 ID=Msa1012440-mRNA-1:exon:4419;Parent=Msa1012440-mRNA-1
chr7_1 exon 17483974 17484018 17483974 ID=Msa1012440-mRNA-1:exon:4418;Parent=Msa1012440-mRNA-1
chr7_1 exon 17486186 17486592 17486186 ID=Msa1012440-mRNA-1:exon:4417;Parent=Msa1012440-mRNA-1
chr7_1 five_prime_UTR 17486543 17486592 17486543 ID=Msa1012440-mRNA-1:five_prime_utr;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17486186 17486542 17486186 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17483974 17484018 17483974 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17483636 17483765 17483636 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17482836 17482899 17482836 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17482665 17482713 17482665 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17482482 17482579 17482482 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17481685 17481823 17481685 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 CDS 17480977 17481123 17480977 ID=Msa1012440-mRNA-1:cds;Parent=Msa1012440-mRNA-1
chr7_1 three_prime_UTR 17480780 17480976 17480780 ID=Msa1012440-mRNA-1:three_prime_utr;Parent=Msa1012440-mRNA-1
chr7_1 three_prime_UTR 17480546 17480664 17480546 ID=Msa1012440-mRNA-1:three_prime_utr;Parent=Msa1012440-mRNA-1
Gene Sequence

>Msa1012440

ATGGCAATGACAGTGGGTCTTTCCGTGTGTTCAATTTTCAAAGTTTCTTATCATGATAATAATAATTACAACAATAAGAGAGTAACAGTAGCAGTATTGCAGAGAAAGGAGAAGATGAGTGTCCCTTACAATCTGAAGGAAGGGCAATCTCGTATTTTCCATGAGCTTCCTTCTGGTTTGAACATGGAAGTAATTGTCCAGAAGAAGAAGAAGAAGAATGAAAGTGAAAGTGAGTGTTCACCAGCTTTGGTATTTGTTCATGGAAGTTATCATGCTGCTTGGTGTTGGGCTGAACAGTGGTTGCCTTTCTTTTCTCAATCTGGTTATGATTGTTATGCTCTTTCTTTGCTTGGACAGGGTGAAAGTGATGAACCAGAAGATTCGGTTGCTGGTACACTTCAGACACACGCAACAGATGTTGCGGATTTTATTCATCGAAATATTCAATCGCCACCCATCTTGCTCGGACATTCATTTGGAGGACTAATTATTCAGTATTATATTTCCAATTTAGGAAATGACAAGCTCAAAGAAAATTTATACCCGGGGCTTAGAGGAGCTGTCCTTGTTTGTTCTGTACCTCCTTCTGGTAATAGTGGACTAGTTTGGCGATATCTAATTTCGAAACCAATTGCTGCCTTCAAGGTGACATACAGCTTGGCTGCAAAAGGTTTTCAAAGCTCTCTTTCTCTTTGCAAGGAGACATTTTTCTCACCCACAATGGAGGATCATGTTGTTAAAAGATATCAAGAACTAATGAAAGAAAGTTCACGGATGCCATTGTTTGATTTAAGAAAGTTGAATGCTTCGCTTCCAGTTCCTTTGGTGCCAAATCTCCCTGTTGAAGTTCTTGTTTTGGGCGCAAAGAATGACTTCATTGTGGATGCAGAAGGACTCAAAGAAACCGCACAGTTTTATGGTTTGTCACCAGTTTGTGTTGAAGGACTTGCTCATGACATGATGTTGGACCCTTCATGGGAGAAAGGTGCAGAAGTTATTCTTTCATGGCTAAAGGGTTTACACAAGTAG

Protein sequence

>Msa1012440

MAMTVGLSVCSIFKVSYHDNNNYNNKRVTVAVLQRKEKMSVPYNLKEGQSRIFHELPSGLNMEVIVQKKKKKNESESECSPALVFVHGSYHAAWCWAEQWLPFFSQSGYDCYALSLLGQGESDEPEDSVAGTLQTHATDVADFIHRNIQSPPILLGHSFGGLIIQYYISNLGNDKLKENLYPGLRGAVLVCSVPPSGNSGLVWRYLISKPIAAFKVTYSLAAKGFQSSLSLCKETFFSPTMEDHVVKRYQELMKESSRMPLFDLRKLNASLPVPLVPNLPVEVLVLGAKNDFIVDAEGLKETAQFYGLSPVCVEGLAHDMMLDPSWEKGAEVILSWLKGLHK*