AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1013410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013410 MtrunA17_Chr4g0068171 70.466 193 20 3 1 156 1 193 1.87e-85 248
Msa1013410 MtrunA17_Chr2g0294701 68.394 193 24 3 1 156 1 193 2.17e-83 243
Msa1013410 MtrunA17_Chr7g0271761 64.249 193 32 3 1 156 1 193 6.62e-79 232
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013410 AT4G02080.1 65.285 193 30 3 1 156 1 193 8.87e-80 234
Msa1013410 AT3G62560.1 65.625 192 29 3 1 155 1 192 1.60e-78 231
Msa1013410 AT1G56330.1 65.625 192 29 3 1 155 1 192 3.36e-78 230
Msa1013410 AT1G09180.1 62.694 193 35 3 1 156 1 193 1.12e-73 219
Msa1013410 AT1G02620.1 85.981 107 15 0 50 156 16 122 3.69e-65 195
Msa1013410 AT3G49870.2 35.849 106 56 1 51 156 69 162 7.89e-13 62.8
Msa1013410 AT3G49870.1 35.849 106 56 1 51 156 88 181 1.37e-12 62.8
Msa1013410 AT5G67560.1 34.906 106 57 1 51 156 88 181 8.15e-12 60.5
Msa1013410 AT3G49860.1 45.455 66 36 0 51 116 80 145 2.02e-11 59.3
Msa1013410 AT5G37680.2 46.154 65 35 0 51 115 41 105 3.00e-11 58.2
Msa1013410 AT5G37680.1 46.154 65 35 0 51 115 88 152 5.46e-11 58.5

Find 146 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTATCATTGTAAATTT+TGG 0.043503 7_1:+19972078 None:intergenic
TAACCCTAGGAATAAAATTT+TGG 0.136968 7_1:+19976335 None:intergenic
TGAGCCAGCTTGCTGATTTC+AGG 0.142562 7_1:+19974602 None:intergenic
TCCAGCTCTTTCTTTGATTC+TGG 0.177361 7_1:+19975592 None:intergenic
CCTGAAGATCCGTAACATTT+TGG 0.186186 7_1:+19972381 None:intergenic
CGTTCAGAAGTCAAATATTT+TGG 0.194320 7_1:-19975015 Msa1013410:three_prime_UTR
GCTTTCTCAGTATATTAAAT+AGG 0.199871 7_1:-19975341 Msa1013410:exon
ACTGCAACTGGTTCACTTAA+TGG 0.213496 7_1:+19972461 None:intergenic
TATACTTTGCTCATGTAAAT+TGG 0.251390 7_1:-19975242 Msa1013410:three_prime_UTR
ATTTCCTTATTCTAAAATTT+AGG 0.269179 7_1:-19974712 Msa1013410:three_prime_UTR
TAGCATTAGGACACGTATTC+AGG 0.296692 7_1:-19972812 Msa1013410:intron
GCCAGTGCACAAGGAATTTC+AGG 0.300628 7_1:-19973620 Msa1013410:intron
ATTGTAAGTTAAGTAGTTAT+TGG 0.307541 7_1:-19974680 Msa1013410:three_prime_UTR
AGAATAAGGAAATGATATAA+AGG 0.321012 7_1:+19974722 None:intergenic
CGTAATATTGATTATCATAC+TGG 0.328135 7_1:-19974560 Msa1013410:three_prime_UTR
AATGTACCTTTCCTTATCTT+AGG 0.333519 7_1:-19975541 Msa1013410:CDS
AATCTAACCATGCTGATTTC+AGG 0.335531 7_1:+19973453 None:intergenic
TCCTTTGGTTAACAATCTTC+AGG 0.337795 7_1:-19975056 Msa1013410:three_prime_UTR
ATTGGATAATAATAGTTAAA+TGG 0.341144 7_1:-19975224 Msa1013410:three_prime_UTR
CCTGACAATGGAGAGATTCT+AGG 0.343979 7_1:-19972891 Msa1013410:three_prime_UTR
TCCAGACTCTACGAGCAATT+TGG 0.346671 7_1:+19976293 None:intergenic
TGACTCCAATGTCCGTCCTT+TGG 0.348016 7_1:-19975419 Msa1013410:CDS
CTGCAACTGGTTCACTTAAT+GGG 0.354500 7_1:+19972462 None:intergenic
CCAAAATGTTACGGATCTTC+AGG 0.360126 7_1:-19972381 Msa1013410:three_prime_UTR
CAGTATGATAATCAATATTA+CGG 0.362689 7_1:+19974561 None:intergenic
CTATAGCATTAGATGCTTCA+TGG 0.368182 7_1:+19972832 None:intergenic
ACCAAATTGCTCGTAGAGTC+TGG 0.380274 7_1:-19976294 Msa1013410:CDS
GCATCTAATGCTATAGCATT+AGG 0.384398 7_1:-19972825 Msa1013410:three_prime_UTR
GGAGTCATAAAGATTACTTT+TGG 0.389248 7_1:+19975435 None:intergenic
GTTACCTCCAAAGTGTCCTT+TGG 0.391743 7_1:+19974373 None:intergenic
TACAAATGCTTTGTGTTTGT+TGG 0.395096 7_1:-19975087 Msa1013410:three_prime_UTR
AACACGTTTGGCAGACAATT+AGG 0.396341 7_1:-19974885 Msa1013410:three_prime_UTR
TCCTAGGGTTAGATAATGCT+TGG 0.396769 7_1:-19976323 Msa1013410:CDS
AATTGCAGAATTAATAATAG+TGG 0.399953 7_1:-19975119 Msa1013410:three_prime_UTR
TGGGAAGATTAGACTGCAAC+TGG 0.404507 7_1:+19972449 None:intergenic
TATGGAATTCTTGCCACCCT+TGG 0.405501 7_1:-19976375 Msa1013410:CDS
CTTTCTCAGTATATTAAATA+GGG 0.415038 7_1:-19975340 Msa1013410:exon
CAATCTTGTTTCCTAAGATA+AGG 0.427363 7_1:+19975530 None:intergenic
AGTATGATAATCAATATTAC+GGG 0.429672 7_1:+19974562 None:intergenic
AGTAGTTATTGGTATTATGC+AGG 0.433487 7_1:-19974669 Msa1013410:three_prime_UTR
GATCGCCACTGATCTGATAA+TGG 0.437463 7_1:-19972304 Msa1013410:three_prime_UTR
AGTCCTAGACCTTGTGTGAA+TGG 0.442848 7_1:+19973944 None:intergenic
TGGTTCAAGTTCAACACGTT+TGG 0.445935 7_1:-19974897 Msa1013410:three_prime_UTR
ACAAATGCTTTGTGTTTGTT+GGG 0.446006 7_1:-19975086 Msa1013410:three_prime_UTR
GCTTTAGATCAGCTTATGCC+TGG 0.451191 7_1:-19974632 Msa1013410:three_prime_UTR
ATTCAGAATCCTGTAAAAGA+AGG 0.453387 7_1:-19972342 Msa1013410:three_prime_UTR
GTACCTCATCTATACTGTAT+TGG 0.453782 7_1:-19973677 Msa1013410:three_prime_UTR
AATCAGCAAGCTGGCTCAAA+GGG 0.462946 7_1:-19974597 Msa1013410:three_prime_UTR
ATTGTTCGCAAGATGGGATA+TGG 0.464211 7_1:-19975379 Msa1013410:CDS
TACTGTATTGGAGACGCAAA+TGG 0.467562 7_1:-19973665 Msa1013410:three_prime_UTR
TCATCATCTGATGCAGCATA+AGG 0.468650 7_1:+19975502 None:intergenic
CCTAGAATCTCTCCATTGTC+AGG 0.477478 7_1:+19972891 None:intergenic
AAGGGAGAAAGGTGAAAAGG+AGG 0.480204 7_1:-19973229 Msa1013410:three_prime_UTR
TGTAGTATTGTTCGCAAGAT+GGG 0.483741 7_1:-19975385 Msa1013410:CDS
GATGCTGCACTAATAGCAAC+TGG 0.484442 7_1:-19973974 Msa1013410:three_prime_UTR
CTCCAATGTCCGTCCTTTGG+AGG 0.487360 7_1:-19975416 Msa1013410:CDS
TAGGGACTTCCAAAATGTTA+CGG 0.491221 7_1:-19972390 Msa1013410:three_prime_UTR
CCTAGGGTTAGATAATGCTT+GGG 0.497577 7_1:-19976322 Msa1013410:CDS
GGATGAGTGAAACATGCAGC+TGG 0.497795 7_1:+19973474 None:intergenic
AAAGTGGCCTAGTTTATCAC+TGG 0.499108 7_1:-19972141 Msa1013410:three_prime_UTR
TAAGGAGCCAAAGGACACTT+TGG 0.499940 7_1:-19974380 Msa1013410:three_prime_UTR
TCACCTTTCTCCCTTGCTTG+AGG 0.500335 7_1:+19973237 None:intergenic
TTGTTGGGCAGTGCTTCCTT+TGG 0.501317 7_1:-19975071 Msa1013410:three_prime_UTR
AGCAAGGGAGAAAGGTGAAA+AGG 0.501828 7_1:-19973232 Msa1013410:three_prime_UTR
CAGCCTCAAGCAAGGGAGAA+AGG 0.504880 7_1:-19973240 Msa1013410:three_prime_UTR
GGCTTGACTAACTTCACTAC+AGG 0.510272 7_1:-19975463 Msa1013410:CDS
AGGGAGAAAGGTGAAAAGGA+GGG 0.510730 7_1:-19973228 Msa1013410:three_prime_UTR
ACCTGAAATTCCTTGTGCAC+TGG 0.512161 7_1:+19973619 None:intergenic
AAATCAGCAAGCTGGCTCAA+AGG 0.512433 7_1:-19974598 Msa1013410:three_prime_UTR
CTGATTTCAGGATCAAATCC+AGG 0.516995 7_1:+19974614 None:intergenic
TCAATAAGTTCGATCAAGAC+AGG 0.518596 7_1:+19974412 None:intergenic
AAAATTTGCAGCCTCAAGCA+AGG 0.522301 7_1:-19973248 Msa1013410:intron
GTGTAGTATTGTTCGCAAGA+TGG 0.522465 7_1:-19975386 Msa1013410:CDS
CAATACAAGTAACATTCGTC+GGG 0.526016 7_1:+19972278 None:intergenic
TTGCTAATATTTCATTTCGG+AGG 0.526725 7_1:-19974799 Msa1013410:three_prime_UTR
ATAAACTAGGCCACTTTCAA+AGG 0.529134 7_1:+19972147 None:intergenic
CCTAGTTGTAGTTATCGAGA+AGG 0.532785 7_1:-19972170 Msa1013410:three_prime_UTR
TGCAGTAATGTTAAGACACT+TGG 0.533131 7_1:-19974963 Msa1013410:three_prime_UTR
GCTCCATTCACACAAGGTCT+AGG 0.533671 7_1:-19973947 Msa1013410:three_prime_UTR
AAAAGAAGGGAACCGTTTGA+AGG 0.534181 7_1:-19972328 Msa1013410:three_prime_UTR
TGCTAATATTTCATTTCGGA+GGG 0.534526 7_1:-19974798 Msa1013410:three_prime_UTR
CCTTCTCGATAACTACAACT+AGG 0.534760 7_1:+19972170 None:intergenic
TTCTTGCCACCCTTGGTCTG+TGG 0.534886 7_1:-19976368 Msa1013410:CDS
TAGTTCTGAAACATGCATGT+AGG 0.538317 7_1:-19975181 Msa1013410:three_prime_UTR
ACACGCATGCGCTCGTCCAC+AGG 0.538640 7_1:+19973799 None:intergenic
TCAATACAAGTAACATTCGT+CGG 0.539217 7_1:+19972277 None:intergenic
GCTCATGCCGCCAGTGCACA+AGG 0.540940 7_1:-19973629 Msa1013410:three_prime_UTR
ATCGAGAAGGCCTTTGAAAG+TGG 0.543539 7_1:-19972157 Msa1013410:three_prime_UTR
TCAAGAACCTCGGACAGAGT+TGG 0.543981 7_1:+19972651 None:intergenic
CTTATAGATCACACCTGCAA+GGG 0.545313 7_1:-19974443 Msa1013410:intron
ATGCGTGTAATTGATGCAAA+TGG 0.545518 7_1:-19973784 Msa1013410:three_prime_UTR
AATTGATGCAAATGGAAAGC+TGG 0.545580 7_1:-19973776 Msa1013410:intron
CAGTGGCGATCTCCTTCAAA+CGG 0.546179 7_1:+19972316 None:intergenic
TCCAGAATCAAAGAAAGAGC+TGG 0.549416 7_1:-19975593 Msa1013410:CDS
GTTGTCCCTCTCTGTCAAGA+TGG 0.549948 7_1:-19974917 Msa1013410:three_prime_UTR
AAAGCCCTAGCAGAAAATGA+AGG 0.551065 7_1:-19973162 Msa1013410:three_prime_UTR
GGAGCCAAAGGACACTTTGG+AGG 0.553800 7_1:-19974377 Msa1013410:intron
CTTCTTGCTGATGAGTCACT+AGG 0.554172 7_1:-19975565 Msa1013410:CDS
CGCAAGATGGGATATGGTGA+AGG 0.562040 7_1:-19975373 Msa1013410:CDS
TCCTGAAGATTGTTAACCAA+AGG 0.562951 7_1:+19975055 None:intergenic
CACCTCCAAAGGACGGACAT+TGG 0.563163 7_1:+19975414 None:intergenic
CTGGAGGGACTATTACGCTC+AGG 0.564042 7_1:-19976275 Msa1013410:intron
AAGCCCTAGCAGAAAATGAA+GGG 0.566776 7_1:-19973161 Msa1013410:three_prime_UTR
TGATCCTGAAATCAGCAAGC+TGG 0.568498 7_1:-19974606 Msa1013410:three_prime_UTR
CCTTATAGATCACACCTGCA+AGG 0.569923 7_1:-19974444 Msa1013410:intron
TAGATCACACCTGCAAGGGA+TGG 0.570520 7_1:-19974439 Msa1013410:three_prime_UTR
ACAGCGAGGCTTTGTTCCTG+TGG 0.575974 7_1:-19973815 Msa1013410:three_prime_UTR
AAATTTGCAGCCTCAAGCAA+GGG 0.577769 7_1:-19973247 Msa1013410:intron
TTCAGAATCCTGTAAAAGAA+GGG 0.579921 7_1:-19972341 Msa1013410:three_prime_UTR
CCTTGTCAAATGCATCAACC+AGG 0.583815 7_1:+19975623 None:intergenic
TTGTTTCCTAAGATAAGGAA+AGG 0.590342 7_1:+19975535 None:intergenic
CCTGGTTGATGCATTTGACA+AGG 0.590610 7_1:-19975623 Msa1013410:CDS
ATTGTTCCTACAGGTTGATG+TGG 0.591363 7_1:-19973842 Msa1013410:intron
GACTAACTTCACTACAGGCA+AGG 0.595366 7_1:-19975458 Msa1013410:CDS
CTACACATGAACACCTCCAA+AGG 0.598493 7_1:+19975403 None:intergenic
TGAAATTCCTTGTGCACTGG+CGG 0.599562 7_1:+19973622 None:intergenic
CTGCACTAATAGCAACTGGA+AGG 0.599943 7_1:-19973970 Msa1013410:three_prime_UTR
TGAGCTATTTAAATCAGCAA+AGG 0.601651 7_1:-19972628 Msa1013410:intron
ATTCACACAAGGTCTAGGAC+TGG 0.605373 7_1:-19973942 Msa1013410:three_prime_UTR
CACTCATCCTGAAATCAGCA+TGG 0.606287 7_1:-19973460 Msa1013410:three_prime_UTR
TGAAGGGGAGGGACTTGCCA+AGG 0.616216 7_1:-19973145 Msa1013410:intron
GGTGGATGTTGTAGTCTACC+TGG 0.619619 7_1:-19975641 Msa1013410:CDS
AGGGTTAGATAATGCTTGGG+TGG 0.625430 7_1:-19976319 Msa1013410:CDS
CTAGCAGAAAATGAAGGGGA+GGG 0.625930 7_1:-19973156 Msa1013410:three_prime_UTR
CCTAGCAGAAAATGAAGGGG+AGG 0.629551 7_1:-19973157 Msa1013410:three_prime_UTR
CCCAAGCATTATCTAACCCT+AGG 0.631250 7_1:+19976322 None:intergenic
GATATGGTGAAGGCTTTCAG+TGG 0.632785 7_1:-19975363 Msa1013410:CDS
GATGAGTGAAACATGCAGCT+GGG 0.634252 7_1:+19973475 None:intergenic
AACTAAACCAGTGATAAACT+AGG 0.636630 7_1:+19972134 None:intergenic
ACATGAACACCTCCAAAGGA+CGG 0.637700 7_1:+19975407 None:intergenic
AAATAGCTCATCAAGAACCT+CGG 0.637846 7_1:+19972641 None:intergenic
AATTGCTCGTAGAGTCTGGA+GGG 0.640603 7_1:-19976290 Msa1013410:CDS
TTGAACCATCTTGACAGAGA+GGG 0.642089 7_1:+19974912 None:intergenic
TGCACATCCAACTCTGTCCG+AGG 0.642721 7_1:-19972658 Msa1013410:three_prime_UTR
TTGATATACAGACCTGACAA+TGG 0.659157 7_1:-19972903 Msa1013410:three_prime_UTR
GGTATCCATTATCAGATCAG+TGG 0.664592 7_1:+19972299 None:intergenic
GGAAGGGCTCCATTCACACA+AGG 0.674546 7_1:-19973953 Msa1013410:three_prime_UTR
TCTCCAATACAGTATAGATG+AGG 0.676335 7_1:+19973674 None:intergenic
TGCACTAATAGCAACTGGAA+GGG 0.676635 7_1:-19973969 Msa1013410:three_prime_UTR
AAATGTTACGGATCTTCAGG+CGG 0.678024 7_1:-19972378 Msa1013410:three_prime_UTR
CAGCATGGTTAGATTGACAG+AGG 0.684531 7_1:-19973445 Msa1013410:intron
AGCCCTAGCAGAAAATGAAG+GGG 0.689185 7_1:-19973160 Msa1013410:three_prime_UTR
CTTGAACCATCTTGACAGAG+AGG 0.698516 7_1:+19974911 None:intergenic
AAATTGCTCGTAGAGTCTGG+AGG 0.706522 7_1:-19976291 Msa1013410:CDS
GTATGATAATCAATATTACG+GGG 0.732955 7_1:+19974563 None:intergenic
GTTGATGTGGCAACACAGCG+AGG 0.748553 7_1:-19973829 Msa1013410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACTTGTATATATTTTTT+TGG - chr7_1:19974517-19974536 Msa1013410:intron 10.0%
!!! CAAAAATTTATATTTTGTTT+GGG + chr7_1:19976125-19976144 None:intergenic 10.0%
!!! TCAAAAATTTATATTTTGTT+TGG + chr7_1:19976126-19976145 None:intergenic 10.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - chr7_1:19972151-19972170 Msa1013410:three_prime_UTR 15.0%
!!! TAATTTCTTTCTTTTATGAA+TGG - chr7_1:19972300-19972319 Msa1013410:three_prime_UTR 15.0%
!! TAATTTAGTCATAAAATTGT+TGG - chr7_1:19972357-19972376 Msa1013410:three_prime_UTR 15.0%
!!! TCATTTTCTAAAACTATTAT+TGG + chr7_1:19972672-19972691 None:intergenic 15.0%
!!! TGTTAATTGTAGATTTTATA+TGG - chr7_1:19972884-19972903 Msa1013410:three_prime_UTR 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - chr7_1:19973328-19973347 Msa1013410:intron 15.0%
!!! ATTTTGCTAATATTTCATTT+CGG - chr7_1:19973750-19973769 Msa1013410:intron 15.0%
!!! ATTTCCTTATTCTAAAATTT+AGG - chr7_1:19973840-19973859 Msa1013410:intron 15.0%
!!! TGTTTTTTTTTAACTTAGTT+TGG - chr7_1:19976355-19976374 Msa1013410:CDS 15.0%
!!! TAAATTTTGGAAAAATGTTA+TGG + chr7_1:19976464-19976483 None:intergenic 15.0%
!!! AAAGAAACATTTTATTCAAC+CGG + chr7_1:19972146-19972165 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - chr7_1:19972159-19972178 Msa1013410:three_prime_UTR 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - chr7_1:19973212-19973231 Msa1013410:three_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - chr7_1:19973433-19973452 Msa1013410:intron 20.0%
!! AGAATAAGGAAATGATATAA+AGG + chr7_1:19973833-19973852 None:intergenic 20.0%
!! ATTGTAAGTTAAGTAGTTAT+TGG - chr7_1:19973872-19973891 Msa1013410:intron 20.0%
!! AGTATGATAATCAATATTAC+GGG + chr7_1:19973993-19974012 None:intergenic 20.0%
!! CAGTATGATAATCAATATTA+CGG + chr7_1:19973994-19974013 None:intergenic 20.0%
!! GAAACTATACATAGAAAAAA+GGG + chr7_1:19974458-19974477 None:intergenic 20.0%
!! TGAAACTATACATAGAAAAA+AGG + chr7_1:19974459-19974478 None:intergenic 20.0%
!! AATATATACAAGTAAACAAG+AGG + chr7_1:19974513-19974532 None:intergenic 20.0%
!!! TGAAAAAATTTGCTTGTATT+AGG - chr7_1:19976143-19976162 Msa1013410:intron 20.0%
!!! GAAAAAATTTGCTTGTATTA+GGG - chr7_1:19976144-19976163 Msa1013410:intron 20.0%
!!! TACTCTATCATTGTAAATTT+TGG + chr7_1:19976477-19976496 None:intergenic 20.0%
!!! GTTTTTGTTTCTGAAATTTC+CGG - chr7_1:19972124-19972143 Msa1013410:three_prime_UTR 25.0%
!! AAGCCAAAATTTTATTCCTA+GGG - chr7_1:19972214-19972233 Msa1013410:three_prime_UTR 25.0%
!! TAACCCTAGGAATAAAATTT+TGG + chr7_1:19972220-19972239 None:intergenic 25.0%
! TCTCAACCACATTTAAATTT+AGG - chr7_1:19972418-19972437 Msa1013410:three_prime_UTR 25.0%
! CTCAACCACATTTAAATTTA+GGG - chr7_1:19972419-19972438 Msa1013410:three_prime_UTR 25.0%
! TCAACCACATTTAAATTTAG+GGG - chr7_1:19972420-19972439 Msa1013410:three_prime_UTR 25.0%
! TTTAAATTTAGGGGTTCATA+AGG - chr7_1:19972429-19972448 Msa1013410:three_prime_UTR 25.0%
! ATACAATATGTTACTGTTTG+AGG + chr7_1:19972559-19972578 None:intergenic 25.0%
!! TTGTAGATTTTATATGGTAC+AGG - chr7_1:19972890-19972909 Msa1013410:three_prime_UTR 25.0%
!! TGATGAATTACGTTTTCATT+TGG - chr7_1:19973067-19973086 Msa1013410:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - chr7_1:19973068-19973087 Msa1013410:intron 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - chr7_1:19973211-19973230 Msa1013410:three_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - chr7_1:19973310-19973329 Msa1013410:intron 25.0%
!!! ACGACCTAAATTTTAGAATA+AGG + chr7_1:19973847-19973866 None:intergenic 25.0%
! GTATGATAATCAATATTACG+GGG + chr7_1:19973992-19974011 None:intergenic 25.0%
!! CGTAATATTGATTATCATAC+TGG - chr7_1:19973992-19974011 Msa1013410:intron 25.0%
! ACTTATTGATGCAAAAACTA+AGG - chr7_1:19974154-19974173 Msa1013410:intron 25.0%
! AATTGTTATGATTTCTTCGA+TGG - chr7_1:19974245-19974264 Msa1013410:intron 25.0%
! ATTGTTATGATTTCTTCGAT+GGG - chr7_1:19974246-19974265 Msa1013410:intron 25.0%
! AATATACATTCATTTCCATC+AGG + chr7_1:19974683-19974702 None:intergenic 25.0%
! CTATATCAGTAACAATAAGT+CGG + chr7_1:19974837-19974856 None:intergenic 25.0%
! ACTGAAGCAAAAAAAGAAAA+GGG + chr7_1:19974982-19975001 None:intergenic 25.0%
! TACTGAAGCAAAAAAAGAAA+AGG + chr7_1:19974983-19975002 None:intergenic 25.0%
! GATTAAAAAGTTACCAACAA+TGG - chr7_1:19975008-19975027 Msa1013410:three_prime_UTR 25.0%
! TGAATAACATAGTTTCAAAG+AGG + chr7_1:19975223-19975242 None:intergenic 25.0%
! AAGATATAAGAAGATAACCT+TGG + chr7_1:19975427-19975446 None:intergenic 25.0%
! CTGTACTAAAAGAATTACTT+TGG - chr7_1:19975503-19975522 Msa1013410:CDS 25.0%
! TACTAAAAGAATTACTTTGG+TGG - chr7_1:19975506-19975525 Msa1013410:CDS 25.0%
!!! ATTCTAGGAGTTCATATTTT+TGG - chr7_1:19975676-19975695 Msa1013410:intron 25.0%
!! AAGATGTTGAAAGTACATTA+AGG + chr7_1:19975963-19975982 None:intergenic 25.0%
! CTTATTGAGTATAACTATTC+TGG - chr7_1:19975980-19975999 Msa1013410:intron 25.0%
! TTCTTTAACCTACATTAAGA+GGG + chr7_1:19976059-19976078 None:intergenic 25.0%
! GAAGCCAAAATTTTATTCCT+AGG - chr7_1:19972213-19972232 Msa1013410:three_prime_UTR 30.0%
TGAACCCCTAAATTTAAATG+TGG + chr7_1:19972427-19972446 None:intergenic 30.0%
!!! GTTTTGAAAGTACTTATGCT+TGG - chr7_1:19972581-19972600 Msa1013410:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - chr7_1:19972698-19972717 Msa1013410:intron 30.0%
CAATGCATATGATTACGTTA+AGG + chr7_1:19972814-19972833 None:intergenic 30.0%
! TAGATTTTATATGGTACAGG+TGG - chr7_1:19972893-19972912 Msa1013410:three_prime_UTR 30.0%
AATGTACCTTTCCTTATCTT+AGG - chr7_1:19973011-19973030 Msa1013410:intron 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + chr7_1:19973020-19973039 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + chr7_1:19973025-19973044 None:intergenic 30.0%
! GGAGTCATAAAGATTACTTT+TGG + chr7_1:19973120-19973139 None:intergenic 30.0%
TACAAATGCTTTGTGTTTGT+TGG - chr7_1:19973465-19973484 Msa1013410:three_prime_UTR 30.0%
ACAAATGCTTTGTGTTTGTT+GGG - chr7_1:19973466-19973485 Msa1013410:three_prime_UTR 30.0%
! CGTTCAGAAGTCAAATATTT+TGG - chr7_1:19973537-19973556 Msa1013410:intron 30.0%
!!! AAATATTTTGGTTGCAGTGA+TGG - chr7_1:19973549-19973568 Msa1013410:intron 30.0%
!!! GCAGTGATGGTTTTTTTAAT+AGG - chr7_1:19973562-19973581 Msa1013410:intron 30.0%
!!! GTGATGGTTTTTTTAATAGG+AGG - chr7_1:19973565-19973584 Msa1013410:intron 30.0%
TTGCTAATATTTCATTTCGG+AGG - chr7_1:19973753-19973772 Msa1013410:intron 30.0%
TGCTAATATTTCATTTCGGA+GGG - chr7_1:19973754-19973773 Msa1013410:intron 30.0%
AGTAGTTATTGGTATTATGC+AGG - chr7_1:19973883-19973902 Msa1013410:intron 30.0%
! CTTGATCAGTTTTTGTTGAT+CGG - chr7_1:19974054-19974073 Msa1013410:intron 30.0%
TGATCTATAAGGAAAACATG+AGG + chr7_1:19974100-19974119 None:intergenic 30.0%
GAATCAATAACCAAAAGCTT+CGG + chr7_1:19974310-19974329 None:intergenic 30.0%
TGTTGTCTTTACTTTGTTAC+AGG - chr7_1:19974553-19974572 Msa1013410:three_prime_UTR 30.0%
!! TTTCTAGCTGAAATGTGTTT+AGG - chr7_1:19974645-19974664 Msa1013410:three_prime_UTR 30.0%
! TTTTTGCATATTGTTCCTAC+AGG - chr7_1:19974701-19974720 Msa1013410:three_prime_UTR 30.0%
CGACTTATTGTTACTGATAT+AGG - chr7_1:19974835-19974854 Msa1013410:three_prime_UTR 30.0%
CTTATTGTTACTGATATAGG+AGG - chr7_1:19974838-19974857 Msa1013410:three_prime_UTR 30.0%
CTGAAGCAAAAAAAGAAAAG+GGG + chr7_1:19974981-19975000 None:intergenic 30.0%
CTAATGCATGCAGATAAAAA+TGG + chr7_1:19975574-19975593 None:intergenic 30.0%
CTATTAATAGTCTAAATCCC+AGG + chr7_1:19975787-19975806 None:intergenic 30.0%
TGAGCTATTTAAATCAGCAA+AGG - chr7_1:19975924-19975943 Msa1013410:intron 30.0%
! AATTAATGCAGGTGTTACAA+AGG + chr7_1:19976032-19976051 None:intergenic 30.0%
GTTCTTTAACCTACATTAAG+AGG + chr7_1:19976060-19976079 None:intergenic 30.0%
ATTCAGAATCCTGTAAAAGA+AGG - chr7_1:19976210-19976229 Msa1013410:intron 30.0%
TTCAGAATCCTGTAAAAGAA+GGG - chr7_1:19976211-19976230 Msa1013410:intron 30.0%
TCAATACAAGTAACATTCGT+CGG + chr7_1:19976278-19976297 None:intergenic 30.0%
AACTAAACCAGTGATAAACT+AGG + chr7_1:19976421-19976440 None:intergenic 30.0%
TGAAGACAAAAACTTGGTAG+TGG - chr7_1:19972071-19972090 Msa1013410:three_prime_UTR 35.0%
GGCTATATTCAGTGTTCTAT+AGG - chr7_1:19972602-19972621 Msa1013410:intron 35.0%
!! CACATGTGTTGGTATTTTGT+CGG - chr7_1:19972709-19972728 Msa1013410:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - chr7_1:19973167-19973186 Msa1013410:three_prime_UTR 35.0%
!! TAGTTCTGAAACATGCATGT+AGG - chr7_1:19973371-19973390 Msa1013410:intron 35.0%
TCCTTTGGTTAACAATCTTC+AGG - chr7_1:19973496-19973515 Msa1013410:three_prime_UTR 35.0%
TCCTGAAGATTGTTAACCAA+AGG + chr7_1:19973500-19973519 None:intergenic 35.0%
TGCAGTAATGTTAAGACACT+TGG - chr7_1:19973589-19973608 Msa1013410:intron 35.0%
! TACTGGAATTTTTGCATCCA+AGG - chr7_1:19974009-19974028 Msa1013410:intron 35.0%
GCAAGATTTAGTAGTTACCT+TGG + chr7_1:19974029-19974048 None:intergenic 35.0%
TCAATAAGTTCGATCAAGAC+AGG + chr7_1:19974143-19974162 None:intergenic 35.0%
! AACTTAACTACCGAAGCTTT+TGG - chr7_1:19974297-19974316 Msa1013410:intron 35.0%
! AGCTGAAATGTGTTTAGGAT+AGG - chr7_1:19974650-19974669 Msa1013410:three_prime_UTR 35.0%
! AGGATAGGAAATTTTCCTGA+TGG - chr7_1:19974665-19974684 Msa1013410:three_prime_UTR 35.0%
ATGCGTGTAATTGATGCAAA+TGG - chr7_1:19974768-19974787 Msa1013410:three_prime_UTR 35.0%
AATTGATGCAAATGGAAAGC+TGG - chr7_1:19974776-19974795 Msa1013410:three_prime_UTR 35.0%
ATAGGAGGATGTTGAATGAT+AGG - chr7_1:19974853-19974872 Msa1013410:three_prime_UTR 35.0%
GTACCTCATCTATACTGTAT+TGG - chr7_1:19974875-19974894 Msa1013410:three_prime_UTR 35.0%
TCTCCAATACAGTATAGATG+AGG + chr7_1:19974881-19974900 None:intergenic 35.0%
!! AATCTAACCATGCTGATTTC+AGG + chr7_1:19975102-19975121 None:intergenic 35.0%
TTCTCTTTCATATGTGTGGT+CGG - chr7_1:19975172-19975191 Msa1013410:three_prime_UTR 35.0%
CACATAACAACTTCAACTGA+AGG + chr7_1:19975270-19975289 None:intergenic 35.0%
!!! GAGGCTGCAAATTTTAAGTT+CGG + chr7_1:19975299-19975318 None:intergenic 35.0%
CTGTCAATGCTATTCTGATA+CGG - chr7_1:19975448-19975467 Msa1013410:CDS 35.0%
! CTGTCATGACAGAAGAATTT+TGG + chr7_1:19975534-19975553 None:intergenic 35.0%
GCATGCAGATAAAAATGGAT+AGG + chr7_1:19975569-19975588 None:intergenic 35.0%
TTGATATACAGACCTGACAA+TGG - chr7_1:19975649-19975668 Msa1013410:intron 35.0%
CTATAGCATTAGATGCTTCA+TGG + chr7_1:19975723-19975742 None:intergenic 35.0%
GCATCTAATGCTATAGCATT+AGG - chr7_1:19975727-19975746 Msa1013410:intron 35.0%
! CTGCTAAGTTTACCATTTTG+TGG - chr7_1:19975841-19975860 Msa1013410:intron 35.0%
AAATAGCTCATCAAGAACCT+CGG + chr7_1:19975914-19975933 None:intergenic 35.0%
AGCTCTATGGGTGTAAAATT+AGG + chr7_1:19976006-19976025 None:intergenic 35.0%
! TAATTTTACACCCATAGAGC+TGG - chr7_1:19976005-19976024 Msa1013410:intron 35.0%
TAGGGACTTCCAAAATGTTA+CGG - chr7_1:19976162-19976181 Msa1013410:intron 35.0%
CAATACAAGTAACATTCGTC+GGG + chr7_1:19976277-19976296 None:intergenic 35.0%
! ATAAACTAGGCCACTTTCAA+AGG + chr7_1:19976408-19976427 None:intergenic 35.0%
! TTCTTTTTGCCACAGACCAA+GGG + chr7_1:19972196-19972215 None:intergenic 40.0%
TCCTAGGGTTAGATAATGCT+TGG - chr7_1:19972229-19972248 Msa1013410:three_prime_UTR 40.0%
CCTAGGGTTAGATAATGCTT+GGG - chr7_1:19972230-19972249 Msa1013410:three_prime_UTR 40.0%
CTCGTGAATCAAATGAATCC+CGG - chr7_1:19972499-19972518 Msa1013410:intron 40.0%
GAATCAAATGAATCCCGGTT+AGG - chr7_1:19972504-19972523 Msa1013410:intron 40.0%
ATATGCGTTACTCTCCTAAC+CGG + chr7_1:19972521-19972540 None:intergenic 40.0%
CGACAAAATACCAACACATG+TGG + chr7_1:19972711-19972730 None:intergenic 40.0%
! TTGGTATTTTGTCGGTGTGT+TGG - chr7_1:19972717-19972736 Msa1013410:intron 40.0%
AGCGTGAATGTAATCATGTG+TGG - chr7_1:19972844-19972863 Msa1013410:three_prime_UTR 40.0%
GCGTGAATGTAATCATGTGT+GGG - chr7_1:19972845-19972864 Msa1013410:three_prime_UTR 40.0%
TCCAGAATCAAAGAAAGAGC+TGG - chr7_1:19972959-19972978 Msa1013410:intron 40.0%
TCCAGCTCTTTCTTTGATTC+TGG + chr7_1:19972963-19972982 None:intergenic 40.0%
TCATCATCTGATGCAGCATA+AGG + chr7_1:19973053-19973072 None:intergenic 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - chr7_1:19973166-19973185 Msa1013410:three_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - chr7_1:19973173-19973192 Msa1013410:three_prime_UTR 40.0%
TTGAACCATCTTGACAGAGA+GGG + chr7_1:19973643-19973662 None:intergenic 40.0%
! TGGTTCAAGTTCAACACGTT+TGG - chr7_1:19973655-19973674 Msa1013410:three_prime_UTR 40.0%
AACACGTTTGGCAGACAATT+AGG - chr7_1:19973667-19973686 Msa1013410:three_prime_UTR 40.0%
CTGATTTCAGGATCAAATCC+AGG + chr7_1:19973941-19973960 None:intergenic 40.0%
TAAGGAAAACATGAGGACAG+TGG + chr7_1:19974093-19974112 None:intergenic 40.0%
CTTATAGATCACACCTGCAA+GGG - chr7_1:19974109-19974128 Msa1013410:intron 40.0%
TGCAAAAACTAAGGAGCCAA+AGG - chr7_1:19974163-19974182 Msa1013410:intron 40.0%
AAGTCTTAGATTGTCTGCCT+CGG + chr7_1:19974403-19974422 None:intergenic 40.0%
TGCACTAATAGCAACTGGAA+GGG - chr7_1:19974583-19974602 Msa1013410:three_prime_UTR 40.0%
!! ATTGTTCCTACAGGTTGATG+TGG - chr7_1:19974710-19974729 Msa1013410:three_prime_UTR 40.0%
TACTGTATTGGAGACGCAAA+TGG - chr7_1:19974887-19974906 Msa1013410:three_prime_UTR 40.0%
!! GTGACTTGTTCAACCATTGT+TGG + chr7_1:19975024-19975043 None:intergenic 40.0%
ACAATGGTTGAACAAGTCAC+TGG - chr7_1:19975024-19975043 Msa1013410:three_prime_UTR 40.0%
CCACACATATGAAAGAGAAC+TGG + chr7_1:19975171-19975190 None:intergenic 40.0%
CCAGTTCTCTTTCATATGTG+TGG - chr7_1:19975168-19975187 Msa1013410:three_prime_UTR 40.0%
AAAATTTGCAGCCTCAAGCA+AGG - chr7_1:19975304-19975323 Msa1013410:three_prime_UTR 40.0%
AAATTTGCAGCCTCAAGCAA+GGG - chr7_1:19975305-19975324 Msa1013410:three_prime_UTR 40.0%
AAAGCCCTAGCAGAAAATGA+AGG - chr7_1:19975390-19975409 Msa1013410:CDS 40.0%
AAGCCCTAGCAGAAAATGAA+GGG - chr7_1:19975391-19975410 Msa1013410:CDS 40.0%
!! CGTATCAGAATAGCATTGAC+AGG + chr7_1:19975450-19975469 None:intergenic 40.0%
TAGCATTAGGACACGTATTC+AGG - chr7_1:19975740-19975759 Msa1013410:intron 40.0%
TTTATACCCAGTTATGCACC+TGG - chr7_1:19975766-19975785 Msa1013410:intron 40.0%
TTATACCCAGTTATGCACCT+GGG - chr7_1:19975767-19975786 Msa1013410:intron 40.0%
TAAATCCCAGGTGCATAACT+GGG + chr7_1:19975775-19975794 None:intergenic 40.0%
GGTAAACTTAGCAGATAGAC+AGG + chr7_1:19975835-19975854 None:intergenic 40.0%
! ACCATTTTGTGGTACAATGC+AGG - chr7_1:19975852-19975871 Msa1013410:intron 40.0%
TCCTGCATTGTACCACAAAA+TGG + chr7_1:19975856-19975875 None:intergenic 40.0%
TTACAAAGGACCAGCTCTAT+GGG + chr7_1:19976018-19976037 None:intergenic 40.0%
! CTGCAACTGGTTCACTTAAT+GGG + chr7_1:19976093-19976112 None:intergenic 40.0%
! ACTGCAACTGGTTCACTTAA+TGG + chr7_1:19976094-19976113 None:intergenic 40.0%
! CCTGAAGATCCGTAACATTT+TGG + chr7_1:19976174-19976193 None:intergenic 40.0%
CCAAAATGTTACGGATCTTC+AGG - chr7_1:19976171-19976190 Msa1013410:intron 40.0%
AAATGTTACGGATCTTCAGG+CGG - chr7_1:19976174-19976193 Msa1013410:intron 40.0%
! AAACGGTTCCCTTCTTTTAC+AGG + chr7_1:19976222-19976241 None:intergenic 40.0%
AAAAGAAGGGAACCGTTTGA+AGG - chr7_1:19976224-19976243 Msa1013410:intron 40.0%
GGTATCCATTATCAGATCAG+TGG + chr7_1:19976256-19976275 None:intergenic 40.0%
CCTTCTCGATAACTACAACT+AGG + chr7_1:19976385-19976404 None:intergenic 40.0%
CCTAGTTGTAGTTATCGAGA+AGG - chr7_1:19976382-19976401 Msa1013410:CDS 40.0%
AAAGTGGCCTAGTTTATCAC+TGG - chr7_1:19976411-19976430 Msa1013410:exon 40.0%
TATGGAATTCTTGCCACCCT+TGG - chr7_1:19972177-19972196 Msa1013410:three_prime_UTR 45.0%
! CTTCTTTTTGCCACAGACCA+AGG + chr7_1:19972197-19972216 None:intergenic 45.0%
CCCAAGCATTATCTAACCCT+AGG + chr7_1:19972233-19972252 None:intergenic 45.0%
AGGGTTAGATAATGCTTGGG+TGG - chr7_1:19972233-19972252 Msa1013410:three_prime_UTR 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - chr7_1:19972258-19972277 Msa1013410:three_prime_UTR 45.0%
TCCAGACTCTACGAGCAATT+TGG + chr7_1:19972262-19972281 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - chr7_1:19972261-19972280 Msa1013410:three_prime_UTR 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - chr7_1:19972262-19972281 Msa1013410:three_prime_UTR 45.0%
TATGCGTTACTCTCCTAACC+GGG + chr7_1:19972520-19972539 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + chr7_1:19972639-19972658 None:intergenic 45.0%
CCTTGTCAAATGCATCAACC+AGG + chr7_1:19972932-19972951 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - chr7_1:19972929-19972948 Msa1013410:intron 45.0%
CTTCTTGCTGATGAGTCACT+AGG - chr7_1:19972987-19973006 Msa1013410:intron 45.0%
GGCTTGACTAACTTCACTAC+AGG - chr7_1:19973089-19973108 Msa1013410:intron 45.0%
GACTAACTTCACTACAGGCA+AGG - chr7_1:19973094-19973113 Msa1013410:intron 45.0%
ACATGAACACCTCCAAAGGA+CGG + chr7_1:19973148-19973167 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + chr7_1:19973152-19973171 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - chr7_1:19973189-19973208 Msa1013410:three_prime_UTR 45.0%
CTTGAACCATCTTGACAGAG+AGG + chr7_1:19973644-19973663 None:intergenic 45.0%
! GCTTTAGATCAGCTTATGCC+TGG - chr7_1:19973920-19973939 Msa1013410:intron 45.0%
TGATCCTGAAATCAGCAAGC+TGG - chr7_1:19973946-19973965 Msa1013410:three_prime_UTR 45.0%
! AAATCAGCAAGCTGGCTCAA+AGG - chr7_1:19973954-19973973 Msa1013410:three_prime_UTR 45.0%
! AATCAGCAAGCTGGCTCAAA+GGG - chr7_1:19973955-19973974 Msa1013410:three_prime_UTR 45.0%
CCTTGCAGGTGTGATCTATA+AGG + chr7_1:19974111-19974130 None:intergenic 45.0%
CCTTATAGATCACACCTGCA+AGG - chr7_1:19974108-19974127 Msa1013410:intron 45.0%
TAAGGAGCCAAAGGACACTT+TGG - chr7_1:19974172-19974191 Msa1013410:intron 45.0%
! GTTACCTCCAAAGTGTCCTT+TGG + chr7_1:19974182-19974201 None:intergenic 45.0%
GATGCTGCACTAATAGCAAC+TGG - chr7_1:19974578-19974597 Msa1013410:three_prime_UTR 45.0%
CTGCACTAATAGCAACTGGA+AGG - chr7_1:19974582-19974601 Msa1013410:three_prime_UTR 45.0%
AGTCCTAGACCTTGTGTGAA+TGG + chr7_1:19974611-19974630 None:intergenic 45.0%
! ATTCACACAAGGTCTAGGAC+TGG - chr7_1:19974610-19974629 Msa1013410:three_prime_UTR 45.0%
TGAAATTCCTTGTGCACTGG+CGG + chr7_1:19974933-19974952 None:intergenic 45.0%
ACCTGAAATTCCTTGTGCAC+TGG + chr7_1:19974936-19974955 None:intergenic 45.0%
! GTGCACAAGGAATTTCAGGT+AGG - chr7_1:19974936-19974955 Msa1013410:three_prime_UTR 45.0%
! CACAAGGAATTTCAGGTAGG+TGG - chr7_1:19974939-19974958 Msa1013410:three_prime_UTR 45.0%
GATGAGTGAAACATGCAGCT+GGG + chr7_1:19975080-19975099 None:intergenic 45.0%
CACTCATCCTGAAATCAGCA+TGG - chr7_1:19975092-19975111 Msa1013410:three_prime_UTR 45.0%
CAGCATGGTTAGATTGACAG+AGG - chr7_1:19975107-19975126 Msa1013410:three_prime_UTR 45.0%
AGCAAGGGAGAAAGGTGAAA+AGG - chr7_1:19975320-19975339 Msa1013410:three_prime_UTR 45.0%
AAGGGAGAAAGGTGAAAAGG+AGG - chr7_1:19975323-19975342 Msa1013410:exon 45.0%
AGGGAGAAAGGTGAAAAGGA+GGG - chr7_1:19975324-19975343 Msa1013410:exon 45.0%
AGCCCTAGCAGAAAATGAAG+GGG - chr7_1:19975392-19975411 Msa1013410:CDS 45.0%
! CTCCCCTTCATTTTCTGCTA+GGG + chr7_1:19975397-19975416 None:intergenic 45.0%
CTAGCAGAAAATGAAGGGGA+GGG - chr7_1:19975396-19975415 Msa1013410:CDS 45.0%
CCTAGAATCTCTCCATTGTC+AGG + chr7_1:19975664-19975683 None:intergenic 45.0%
CCTGACAATGGAGAGATTCT+AGG - chr7_1:19975661-19975680 Msa1013410:intron 45.0%
CTAAATCCCAGGTGCATAAC+TGG + chr7_1:19975776-19975795 None:intergenic 45.0%
GTTACAAAGGACCAGCTCTA+TGG + chr7_1:19976019-19976038 None:intergenic 45.0%
AATTCGCGCCCTCTTAATGT+AGG - chr7_1:19976048-19976067 Msa1013410:intron 45.0%
TGGGAAGATTAGACTGCAAC+TGG + chr7_1:19976106-19976125 None:intergenic 45.0%
GATCGCCACTGATCTGATAA+TGG - chr7_1:19976248-19976267 Msa1013410:intron 45.0%
! ATCGAGAAGGCCTTTGAAAG+TGG - chr7_1:19976395-19976414 Msa1013410:CDS 45.0%
! TTTTTGCCACAGACCAAGGG+TGG + chr7_1:19972193-19972212 None:intergenic 50.0%
GGTGGATGTTGTAGTCTACC+TGG - chr7_1:19972911-19972930 Msa1013410:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - chr7_1:19973133-19973152 Msa1013410:intron 50.0%
CGCAAGATGGGATATGGTGA+AGG - chr7_1:19973179-19973198 Msa1013410:three_prime_UTR 50.0%
TTGTTGGGCAGTGCTTCCTT+TGG - chr7_1:19973481-19973500 Msa1013410:three_prime_UTR 50.0%
GTTGTCCCTCTCTGTCAAGA+TGG - chr7_1:19973635-19973654 Msa1013410:three_prime_UTR 50.0%
!! TGAGCCAGCTTGCTGATTTC+AGG + chr7_1:19973953-19973972 None:intergenic 50.0%
TAGATCACACCTGCAAGGGA+TGG - chr7_1:19974113-19974132 Msa1013410:intron 50.0%
! ACAGGTTTTCCATCCCTTGC+AGG + chr7_1:19974125-19974144 None:intergenic 50.0%
CGCATAAGCGCTTGATGTAC+TGG - chr7_1:19974343-19974362 Msa1013410:intron 50.0%
GCTCCATTCACACAAGGTCT+AGG - chr7_1:19974605-19974624 Msa1013410:three_prime_UTR 50.0%
GTGTTGCCACATCAACCTGT+AGG + chr7_1:19974719-19974738 None:intergenic 50.0%
GCCAGTGCACAAGGAATTTC+AGG - chr7_1:19974932-19974951 Msa1013410:three_prime_UTR 50.0%
GGATGAGTGAAACATGCAGC+TGG + chr7_1:19975081-19975100 None:intergenic 50.0%
TCACCTTTCTCCCTTGCTTG+AGG + chr7_1:19975318-19975337 None:intergenic 50.0%
! CCTCCCCTTCATTTTCTGCT+AGG + chr7_1:19975398-19975417 None:intergenic 50.0%
CCTAGCAGAAAATGAAGGGG+AGG - chr7_1:19975395-19975414 Msa1013410:CDS 50.0%
TCAAGAACCTCGGACAGAGT+TGG + chr7_1:19975904-19975923 None:intergenic 50.0%
! AAGAGGGCGCGAATTAATGC+AGG + chr7_1:19976043-19976062 None:intergenic 50.0%
CAGTGGCGATCTCCTTCAAA+CGG + chr7_1:19976239-19976258 None:intergenic 50.0%
TTCTTGCCACCCTTGGTCTG+TGG - chr7_1:19972184-19972203 Msa1013410:three_prime_UTR 55.0%
CTGGAGGGACTATTACGCTC+AGG - chr7_1:19972277-19972296 Msa1013410:three_prime_UTR 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - chr7_1:19973136-19973155 Msa1013410:intron 55.0%
CACCTCCAAAGGACGGACAT+TGG + chr7_1:19973141-19973160 None:intergenic 55.0%
GGAGCCAAAGGACACTTTGG+AGG - chr7_1:19974175-19974194 Msa1013410:intron 55.0%
GAGTTCATGAAGCTGCACCG+AGG - chr7_1:19974383-19974402 Msa1013410:three_prime_UTR 55.0%
GGAAGGGCTCCATTCACACA+AGG - chr7_1:19974599-19974618 Msa1013410:three_prime_UTR 55.0%
GTTGATGTGGCAACACAGCG+AGG - chr7_1:19974723-19974742 Msa1013410:three_prime_UTR 55.0%
!! ACAGCGAGGCTTTGTTCCTG+TGG - chr7_1:19974737-19974756 Msa1013410:three_prime_UTR 55.0%
CAGCCTCAAGCAAGGGAGAA+AGG - chr7_1:19975312-19975331 Msa1013410:three_prime_UTR 55.0%
TGCACATCCAACTCTGTCCG+AGG - chr7_1:19975894-19975913 Msa1013410:intron 55.0%
TGAAGGGGAGGGACTTGCCA+AGG - chr7_1:19975407-19975426 Msa1013410:CDS 60.0%
ACACGCATGCGCTCGTCCAC+AGG + chr7_1:19974756-19974775 None:intergenic 65.0%
GCTCATGCCGCCAGTGCACA+AGG - chr7_1:19974923-19974942 Msa1013410:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 19972070 19976504 19972070 ID=Msa1013410;Name=Msa1013410
chr7_1 mRNA 19972070 19976504 19972070 ID=Msa1013410-mRNA-1;Parent=Msa1013410;Name=Msa1013410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=86|0.81|0.91|0.91|0.72|0.66|12|1919|156
chr7_1 exon 19972070 19972504 19972070 ID=Msa1013410-mRNA-1:exon:4842;Parent=Msa1013410-mRNA-1
chr7_1 exon 19972629 19972700 19972629 ID=Msa1013410-mRNA-1:exon:4841;Parent=Msa1013410-mRNA-1
chr7_1 exon 19972813 19972925 19972813 ID=Msa1013410-mRNA-1:exon:4840;Parent=Msa1013410-mRNA-1
chr7_1 exon 19973146 19973259 19973146 ID=Msa1013410-mRNA-1:exon:4839;Parent=Msa1013410-mRNA-1
chr7_1 exon 19973446 19973534 19973446 ID=Msa1013410-mRNA-1:exon:4838;Parent=Msa1013410-mRNA-1
chr7_1 exon 19973621 19973699 19973621 ID=Msa1013410-mRNA-1:exon:4837;Parent=Msa1013410-mRNA-1
chr7_1 exon 19973777 19973851 19973777 ID=Msa1013410-mRNA-1:exon:4836;Parent=Msa1013410-mRNA-1
chr7_1 exon 19973937 19973999 19973937 ID=Msa1013410-mRNA-1:exon:4835;Parent=Msa1013410-mRNA-1
chr7_1 exon 19974378 19974458 19974378 ID=Msa1013410-mRNA-1:exon:4834;Parent=Msa1013410-mRNA-1
chr7_1 exon 19974544 19975662 19974544 ID=Msa1013410-mRNA-1:exon:4833;Parent=Msa1013410-mRNA-1
chr7_1 exon 19975690 19975696 19975690 ID=Msa1013410-mRNA-1:exon:4832;Parent=Msa1013410-mRNA-1
chr7_1 exon 19976276 19976504 19976276 ID=Msa1013410-mRNA-1:exon:4831;Parent=Msa1013410-mRNA-1
chr7_1 five_prime_UTR 19976419 19976504 19976419 ID=Msa1013410-mRNA-1:five_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 CDS 19976276 19976418 19976276 ID=Msa1013410-mRNA-1:cds;Parent=Msa1013410-mRNA-1
chr7_1 CDS 19975690 19975696 19975690 ID=Msa1013410-mRNA-1:cds;Parent=Msa1013410-mRNA-1
chr7_1 CDS 19975342 19975662 19975342 ID=Msa1013410-mRNA-1:cds;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19974544 19975341 19974544 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19974378 19974458 19974378 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19973937 19973999 19973937 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19973777 19973851 19973777 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19973621 19973699 19973621 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19973446 19973534 19973446 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19973146 19973259 19973146 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19972813 19972925 19972813 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19972629 19972700 19972629 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
chr7_1 three_prime_UTR 19972070 19972504 19972070 ID=Msa1013410-mRNA-1:three_prime_utr;Parent=Msa1013410-mRNA-1
Gene Sequence

>Msa1013410

ATGTTTCTTTTTGATTGGTTTTATGGAATTCTTGCCACCCTTGGTCTGTGGCAAAAAGAAGCCAAAATTTTATTCCTAGGGTTAGATAATGCTTGGGTGGTCACCAAATTGCTCGTAGAGTCTGGAGGGACTATTACGCTCAGCGTTCATGTGGATGTTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAATCAAAGAAAGAGCTGGATGCTCTTCTTGCTGATGAGTCACTAGGAAATGTACCTTTCCTTATCTTAGGAAACAAGATTGACATTCCTTATGCTGCATCAGATGATGAATTACGTTTTCATTTGGGCTTGACTAACTTCACTACAGGCAAGGCCAAAAGTAATCTTTATGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGTAGTATTGTTCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTTTCTCAGTATATTAAATAG
Protein sequence

>Msa1013410

MFLFDWFYGILATLGLWQKEAKILFLGLDNAWVVTKLLVESGGTITLSVHVDVVVYLVDAFDKERFPESKKELDALLADESLGNVPFLILGNKIDIPYAASDDELRFHLGLTNFTTGKAKSNLYDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK*