AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093520 MtrunA17_Chr4g0068171 68.912 193 11 1 1 144 1 193 5.52e-85 247
Msa1093520 MtrunA17_Chr2g0294701 66.321 193 16 1 1 144 1 193 6.34e-83 241
Msa1093520 MtrunA17_Chr7g0271761 62.176 193 24 1 1 144 1 193 2.26e-78 230
Msa1093520 MtrunA17_Chr5g0434561 45.312 64 35 0 39 102 88 151 4.20e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093520 AT4G02080.1 63.212 193 22 1 1 144 1 193 2.00e-79 233
Msa1093520 AT3G62560.1 63.542 192 21 1 1 143 1 192 2.93e-78 230
Msa1093520 AT1G56330.1 63.542 192 21 1 1 143 1 192 8.28e-78 229
Msa1093520 AT1G09180.1 60.622 193 27 1 1 144 1 193 4.18e-73 217
Msa1093520 AT1G02620.1 87.736 106 13 0 39 144 17 122 1.86e-66 197
Msa1093520 AT3G49870.2 36.792 106 55 1 39 144 69 162 1.06e-13 64.7
Msa1093520 AT3G49870.1 36.792 106 55 1 39 144 88 181 1.73e-13 64.7
Msa1093520 AT5G67560.1 35.849 106 56 1 39 144 88 181 1.17e-12 62.4
Msa1093520 AT5G37680.2 47.692 65 34 0 39 103 41 105 4.10e-12 60.1
Msa1093520 AT5G37680.1 47.692 65 34 0 39 103 88 152 8.68e-12 60.1
Msa1093520 AT3G49860.1 45.455 66 36 0 39 104 80 145 1.71e-11 59.3

Find 141 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTATCATTGTAAATTT+TGG 0.043503 7_3:-13462260 None:intergenic
TAACCCTAGGAATAAAATTT+TGG 0.136968 7_3:-13458003 None:intergenic
TGAGCTAGCTTGCTGATTTC+AGG 0.142790 7_3:-13459737 None:intergenic
TCCAGCTCTTTCTTTGATTC+TGG 0.177361 7_3:-13458746 None:intergenic
CCTGAAGATCCGTAACATTT+TGG 0.186186 7_3:-13461958 None:intergenic
CGTTCAGAAGTCAAATATTT+TGG 0.194320 7_3:+13459323 Msa1093520:three_prime_UTR
GCTTTCTCAGTATATTAAAT+AGG 0.199871 7_3:+13458997 Msa1093520:CDS
ACTGCAACTGGTTCACTTAA+TGG 0.213496 7_3:-13461878 None:intergenic
TATACTTTGCTCATGTAAAT+TGG 0.251390 7_3:+13459096 Msa1093520:three_prime_UTR
ATTTCCTTATTCTAAAATTT+AGG 0.269179 7_3:+13459627 Msa1093520:three_prime_UTR
GGAGTCATAAAGATTAATTT+TGG 0.288659 7_3:-13458903 None:intergenic
TAGCATTAGGACACGTATTC+AGG 0.296692 7_3:+13461527 Msa1093520:three_prime_UTR
GCCAGTGCACAAGGAATTTC+AGG 0.300628 7_3:+13460719 Msa1093520:three_prime_UTR
ATTGTAAGTTAAGTAGTTAT+TGG 0.307541 7_3:+13459659 Msa1093520:three_prime_UTR
AGAATAAGGAAATGATATAA+TGG 0.328699 7_3:-13459617 None:intergenic
AATGTACCTTTCCTTATCTT+AGG 0.333519 7_3:+13458797 Msa1093520:CDS
AATCTAACCATGCTGATTTC+AGG 0.335531 7_3:-13460886 None:intergenic
TCCTTTGGTTAACAATCTTC+AGG 0.337795 7_3:+13459282 Msa1093520:three_prime_UTR
CGTAATATTGATTATCATAC+TGG 0.338362 7_3:+13459779 Msa1093520:three_prime_UTR
ATTGGATAATAATAGTTAAA+TGG 0.341144 7_3:+13459114 Msa1093520:three_prime_UTR
CCTGACAATGGAGAGATTCT+AGG 0.343979 7_3:+13461448 Msa1093520:three_prime_UTR
TCCAGACTCTACGAGCAATT+TGG 0.346671 7_3:-13458045 None:intergenic
TGACTCCAATGTCCGTCCTT+TGG 0.348016 7_3:+13458919 Msa1093520:CDS
CTGCAACTGGTTCACTTAAT+GGG 0.354500 7_3:-13461877 None:intergenic
CCAAAATGTTACGGATCTTC+AGG 0.360126 7_3:+13461958 Msa1093520:three_prime_UTR
CTATAGCATTAGATGCTTCA+TGG 0.368182 7_3:-13461507 None:intergenic
CAGTATGATAATCAATATTA+CGG 0.369592 7_3:-13459778 None:intergenic
GCATCTAATGCTATAGCATT+AGG 0.384398 7_3:+13461514 Msa1093520:three_prime_UTR
GTTACCTCCAAAGTGTCCTT+TGG 0.391743 7_3:-13459966 None:intergenic
TACAAATGCTTTGTGTTTGT+TGG 0.395096 7_3:+13459251 Msa1093520:three_prime_UTR
AACACGTTTGGCAGACAATT+AGG 0.396341 7_3:+13459472 Msa1093520:three_prime_UTR
TCCTAGGGTTAGATAATGCT+TGG 0.396769 7_3:+13458015 Msa1093520:CDS
AATTGCAGAATTAATAATAG+TGG 0.399953 7_3:+13459219 Msa1093520:three_prime_UTR
TGGGAAGATTAGACTGCAAC+TGG 0.404507 7_3:-13461890 None:intergenic
TATGGAATTCTTGCCACCCT+TGG 0.405501 7_3:+13457963 Msa1093520:CDS
CTTTCTCAGTATATTAAATA+GGG 0.415038 7_3:+13458998 Msa1093520:CDS
CAATCTTGTTTCCTAAGATA+AGG 0.427363 7_3:-13458808 None:intergenic
AGTATGATAATCAATATTAC+GGG 0.429672 7_3:-13459777 None:intergenic
AGTAGTTATTGGTATTATGC+AGG 0.433487 7_3:+13459670 Msa1093520:three_prime_UTR
GATTGCCACTGATCTGATAA+TGG 0.437463 7_3:+13462035 Msa1093520:three_prime_UTR
AGTCCTAGACCTTGTGTGAA+TGG 0.442848 7_3:-13460395 None:intergenic
TGGTTCAAGTTCAACACGTT+TGG 0.445935 7_3:+13459460 Msa1093520:three_prime_UTR
ACAAATGCTTTGTGTTTGTT+GGG 0.446006 7_3:+13459252 Msa1093520:three_prime_UTR
GCTTTAGATCAGCTTATGCC+TGG 0.451191 7_3:+13459707 Msa1093520:three_prime_UTR
ATTCAGAATCCTGTAAAAGA+AGG 0.453387 7_3:+13461997 Msa1093520:three_prime_UTR
GTACCTCATCTATACTGTAT+TGG 0.453782 7_3:+13460662 Msa1093520:three_prime_UTR
ATTGTTCGCAAGATGGGATA+TGG 0.464211 7_3:+13458959 Msa1093520:CDS
TACTGTATTGGAGACGCAAA+TGG 0.467562 7_3:+13460674 Msa1093520:three_prime_UTR
TCATCATCTGATGCAGCATA+AGG 0.468650 7_3:-13458836 None:intergenic
CCTAGAATCTCTCCATTGTC+AGG 0.477478 7_3:-13461448 None:intergenic
AAGGGAGAAAGGTGAAAAGG+AGG 0.480204 7_3:+13461110 Msa1093520:three_prime_UTR
TGTAGTATTGTTCGCAAGAT+GGG 0.483741 7_3:+13458953 Msa1093520:CDS
GATGCTGCACTAATAGCAAC+TGG 0.484442 7_3:+13460365 Msa1093520:three_prime_UTR
CTCCAATGTCCGTCCTTTGG+AGG 0.487360 7_3:+13458922 Msa1093520:CDS
TAGGGACTTCCAAAATGTTA+CGG 0.491221 7_3:+13461949 Msa1093520:three_prime_UTR
CCTAGGGTTAGATAATGCTT+GGG 0.497577 7_3:+13458016 Msa1093520:CDS
GGATGAGTGAAACATGCAGC+TGG 0.497795 7_3:-13460865 None:intergenic
AAAGTGGCCTAGTTTATCAC+TGG 0.499108 7_3:+13462197 Msa1093520:three_prime_UTR
TAAGGAGCCAAAGGACACTT+TGG 0.499940 7_3:+13459959 Msa1093520:three_prime_UTR
TCACCTTTCTCCCTTGCTTG+AGG 0.500335 7_3:-13461102 None:intergenic
TTGTTGGGCAGTGCTTCCTT+TGG 0.501317 7_3:+13459267 Msa1093520:three_prime_UTR
AGCAAGGGAGAAAGGTGAAA+AGG 0.501828 7_3:+13461107 Msa1093520:three_prime_UTR
AATCAGCAAGCTAGCTCAAA+GGG 0.504644 7_3:+13459742 Msa1093520:three_prime_UTR
CAGCCTCAAGCAAGGGAGAA+AGG 0.504880 7_3:+13461099 Msa1093520:intron
GGCTTGACTAACTTCACTAC+AGG 0.510272 7_3:+13458875 Msa1093520:CDS
AGGGAGAAAGGTGAAAAGGA+GGG 0.510730 7_3:+13461111 Msa1093520:three_prime_UTR
ACCTGAAATTCCTTGTGCAC+TGG 0.512161 7_3:-13460720 None:intergenic
CTGATTTCAGGATCAAATCC+AGG 0.516995 7_3:-13459725 None:intergenic
TCAATAAGTTCGATCAAGAC+AGG 0.518596 7_3:-13459927 None:intergenic
AAAATTTGCAGCCTCAAGCA+AGG 0.522301 7_3:+13461091 Msa1093520:intron
GTGTAGTATTGTTCGCAAGA+TGG 0.522465 7_3:+13458952 Msa1093520:CDS
CAATACAAGTAACATTCGTC+GGG 0.526016 7_3:-13462061 None:intergenic
TTGCTAATATTTCATTTCGG+AGG 0.526725 7_3:+13459558 Msa1093520:three_prime_UTR
ATAAACTAGGCCACTTTCAA+AGG 0.529134 7_3:-13462191 None:intergenic
CCTAGTTGTAGTTATCGAGA+AGG 0.532785 7_3:+13462168 Msa1093520:three_prime_UTR
TGCAGTAATGTTAAGACACT+TGG 0.533131 7_3:+13459375 Msa1093520:three_prime_UTR
GCTCCATTCACACAAGGTCT+AGG 0.533671 7_3:+13460392 Msa1093520:three_prime_UTR
AAAAGAAGGGAACCGTTTGA+AGG 0.534181 7_3:+13462011 Msa1093520:three_prime_UTR
TGCTAATATTTCATTTCGGA+GGG 0.534526 7_3:+13459559 Msa1093520:three_prime_UTR
CCTTCTCGATAACTACAACT+AGG 0.534760 7_3:-13462168 None:intergenic
TTCTTGCCACCCTTGGTCTG+TGG 0.534886 7_3:+13457970 Msa1093520:CDS
TAGTTCTGAAACATGCATGT+AGG 0.538317 7_3:+13459157 Msa1093520:three_prime_UTR
ACACGCATGCGCTCGTCCAC+AGG 0.538640 7_3:-13460540 None:intergenic
TCAATACAAGTAACATTCGT+CGG 0.539217 7_3:-13462062 None:intergenic
GCTCATGCCGCCAGTGCACA+AGG 0.540940 7_3:+13460710 Msa1093520:three_prime_UTR
ATCGAGAAGGCCTTTGAAAG+TGG 0.543539 7_3:+13462181 Msa1093520:three_prime_UTR
TCAAGAACCTCGGACAGAGT+TGG 0.543981 7_3:-13461688 None:intergenic
CTTATAGATCACACCTGCAA+GGG 0.545313 7_3:+13459896 Msa1093520:intron
ATGCGTGTAATTGATGCAAA+TGG 0.545518 7_3:+13460555 Msa1093520:three_prime_UTR
AATTGATGCAAATGGAAAGC+TGG 0.545580 7_3:+13460563 Msa1093520:three_prime_UTR
CAGTGGCAATCTCCTTCAAA+CGG 0.546179 7_3:-13462023 None:intergenic
TCCAGAATCAAAGAAAGAGC+TGG 0.549416 7_3:+13458745 Msa1093520:CDS
GTTGTCCCTCTCTGTCAAGA+TGG 0.549948 7_3:+13459440 Msa1093520:three_prime_UTR
AAAGCCCTAGCAGAAAATGA+AGG 0.551065 7_3:+13461177 Msa1093520:three_prime_UTR
GGAGCCAAAGGACACTTTGG+AGG 0.553800 7_3:+13459962 Msa1093520:three_prime_UTR
CTTCTTGCTGATGAGTCACT+AGG 0.554172 7_3:+13458773 Msa1093520:CDS
AAATCAGCAAGCTAGCTCAA+AGG 0.559790 7_3:+13459741 Msa1093520:three_prime_UTR
CGCAAGATGGGATATGGTGA+AGG 0.562040 7_3:+13458965 Msa1093520:CDS
TCCTGAAGATTGTTAACCAA+AGG 0.562951 7_3:-13459283 None:intergenic
CACCTCCAAAGGACGGACAT+TGG 0.563163 7_3:-13458924 None:intergenic
AAGCCCTAGCAGAAAATGAA+GGG 0.566776 7_3:+13461178 Msa1093520:three_prime_UTR
CCTTATAGATCACACCTGCA+AGG 0.569923 7_3:+13459895 Msa1093520:intron
TAGATCACACCTGCAAGGGA+TGG 0.570520 7_3:+13459900 Msa1093520:intron
ACAGCGAGGCTTTGTTCCTG+TGG 0.575974 7_3:+13460524 Msa1093520:three_prime_UTR
AAATTTGCAGCCTCAAGCAA+GGG 0.577769 7_3:+13461092 Msa1093520:intron
GGTGGATGCTGTAGTCTACC+TGG 0.579563 7_3:+13458697 Msa1093520:intron
TTCAGAATCCTGTAAAAGAA+GGG 0.579921 7_3:+13461998 Msa1093520:three_prime_UTR
CCTTGTCAAATGCATCAACC+AGG 0.583815 7_3:-13458715 None:intergenic
TTGTTTCCTAAGATAAGGAA+AGG 0.590342 7_3:-13458803 None:intergenic
CCTGGTTGATGCATTTGACA+AGG 0.590610 7_3:+13458715 Msa1093520:CDS
ATTGTTCCTACAGGTTGATG+TGG 0.591363 7_3:+13460497 Msa1093520:intron
GACTAACTTCACTACAGGCA+AGG 0.595366 7_3:+13458880 Msa1093520:CDS
CTACACATGAACACCTCCAA+AGG 0.598493 7_3:-13458935 None:intergenic
TGAAATTCCTTGTGCACTGG+CGG 0.599562 7_3:-13460717 None:intergenic
CTGCACTAATAGCAACTGGA+AGG 0.599943 7_3:+13460369 Msa1093520:three_prime_UTR
TGAGCTATTTAAATCAGCAA+AGG 0.601651 7_3:+13461711 Msa1093520:three_prime_UTR
ATTCACACAAGGTCTAGGAC+TGG 0.605373 7_3:+13460397 Msa1093520:three_prime_UTR
CACTCATCCTGAAATCAGCA+TGG 0.606287 7_3:+13460879 Msa1093520:three_prime_UTR
TGAAGGGGAGGGACTTGCCA+AGG 0.616216 7_3:+13461194 Msa1093520:three_prime_UTR
AGGGTTAGATAATGCTTGGG+TGG 0.625430 7_3:+13458019 Msa1093520:CDS
CTAGCAGAAAATGAAGGGGA+GGG 0.625930 7_3:+13461183 Msa1093520:three_prime_UTR
CCTAGCAGAAAATGAAGGGG+AGG 0.629551 7_3:+13461182 Msa1093520:three_prime_UTR
CCCAAGCATTATCTAACCCT+AGG 0.631250 7_3:-13458016 None:intergenic
GATATGGTGAAGGCTTTCAG+TGG 0.632785 7_3:+13458975 Msa1093520:CDS
GATGAGTGAAACATGCAGCT+GGG 0.634252 7_3:-13460864 None:intergenic
AACTAAACCAGTGATAAACT+AGG 0.636630 7_3:-13462204 None:intergenic
ACATGAACACCTCCAAAGGA+CGG 0.637700 7_3:-13458931 None:intergenic
AAATAGCTCATCAAGAACCT+CGG 0.637846 7_3:-13461698 None:intergenic
TTGAACCATCTTGACAGAGA+GGG 0.642089 7_3:-13459445 None:intergenic
TGCACATCCAACTCTGTCCG+AGG 0.642721 7_3:+13461681 Msa1093520:three_prime_UTR
TTGATATACAGACCTGACAA+TGG 0.659157 7_3:+13461436 Msa1093520:three_prime_UTR
GGTATCCATTATCAGATCAG+TGG 0.664592 7_3:-13462040 None:intergenic
GGAAGGGCTCCATTCACACA+AGG 0.674546 7_3:+13460386 Msa1093520:three_prime_UTR
TCTCCAATACAGTATAGATG+AGG 0.676335 7_3:-13460665 None:intergenic
TGCACTAATAGCAACTGGAA+GGG 0.676635 7_3:+13460370 Msa1093520:three_prime_UTR
AAATGTTACGGATCTTCAGG+CGG 0.678024 7_3:+13461961 Msa1093520:three_prime_UTR
CAGCATGGTTAGATTGACAG+AGG 0.684531 7_3:+13460894 Msa1093520:three_prime_UTR
AGCCCTAGCAGAAAATGAAG+GGG 0.689185 7_3:+13461179 Msa1093520:three_prime_UTR
CTTGAACCATCTTGACAGAG+AGG 0.698516 7_3:-13459446 None:intergenic
GTATGATAATCAATATTACG+GGG 0.732955 7_3:-13459776 None:intergenic
GTTGATGTGGCAACACAGCG+AGG 0.748553 7_3:+13460510 Msa1093520:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACTTGTATATATTTTTT+TGG + chr7_3:13460304-13460323 Msa1093520:intron 10.0%
!!! CAAAAATTTATATTTTGTTT+GGG - chr7_3:13461912-13461931 None:intergenic 10.0%
!!! TCAAAAATTTATATTTTGTT+TGG - chr7_3:13461913-13461932 None:intergenic 10.0%
!!! TAATTTCTTTCTTTTATGAA+TGG + chr7_3:13458086-13458105 Msa1093520:intron 15.0%
!! TAATTTAGTCATAAAATTGT+TGG + chr7_3:13458143-13458162 Msa1093520:intron 15.0%
!!! TCATTTTCTAAAACTATTAT+TGG - chr7_3:13458458-13458477 None:intergenic 15.0%
!!! TGTTAATTGTAGATTTTATA+TGG + chr7_3:13458670-13458689 Msa1093520:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG + chr7_3:13459114-13459133 Msa1093520:three_prime_UTR 15.0%
!!! ATTTTGCTAATATTTCATTT+CGG + chr7_3:13459555-13459574 Msa1093520:three_prime_UTR 15.0%
!!! ATTTCCTTATTCTAAAATTT+AGG + chr7_3:13459627-13459646 Msa1093520:three_prime_UTR 15.0%
!!! TTGTTTTTTTTAACTTAGTT+TGG + chr7_3:13462141-13462160 Msa1093520:three_prime_UTR 15.0%
!!! TAAATTTTGGAAAAATGTTA+TGG - chr7_3:13462250-13462269 None:intergenic 15.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG + chr7_3:13457945-13457964 Msa1093520:CDS 20.0%
!! CTTTCTCAGTATATTAAATA+GGG + chr7_3:13458998-13459017 Msa1093520:CDS 20.0%
!! AATTGCAGAATTAATAATAG+TGG + chr7_3:13459219-13459238 Msa1093520:three_prime_UTR 20.0%
!! AGAATAAGGAAATGATATAA+TGG - chr7_3:13459620-13459639 None:intergenic 20.0%
!! ATTGTAAGTTAAGTAGTTAT+TGG + chr7_3:13459659-13459678 Msa1093520:three_prime_UTR 20.0%
!! AGTATGATAATCAATATTAC+GGG - chr7_3:13459780-13459799 None:intergenic 20.0%
!! CAGTATGATAATCAATATTA+CGG - chr7_3:13459781-13459800 None:intergenic 20.0%
!! GAAACTATACATAGAAAAAA+GGG - chr7_3:13460245-13460264 None:intergenic 20.0%
!! TGAAACTATACATAGAAAAA+AGG - chr7_3:13460246-13460265 None:intergenic 20.0%
!! AATATATACAAGTAAACAAG+AGG - chr7_3:13460300-13460319 None:intergenic 20.0%
!!! TGAAAAAATTTGCTTGTATT+AGG + chr7_3:13461930-13461949 Msa1093520:three_prime_UTR 20.0%
!!! GAAAAAATTTGCTTGTATTA+GGG + chr7_3:13461931-13461950 Msa1093520:three_prime_UTR 20.0%
!!! TACTCTATCATTGTAAATTT+TGG - chr7_3:13462263-13462282 None:intergenic 20.0%
!! AAGCCAAAATTTTATTCCTA+GGG + chr7_3:13458000-13458019 Msa1093520:CDS 25.0%
!! TAACCCTAGGAATAAAATTT+TGG - chr7_3:13458006-13458025 None:intergenic 25.0%
! TCTCAACCACATTTAAATTT+AGG + chr7_3:13458204-13458223 Msa1093520:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG + chr7_3:13458205-13458224 Msa1093520:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG + chr7_3:13458206-13458225 Msa1093520:intron 25.0%
! TTTAAATTTAGGGGTTCATA+AGG + chr7_3:13458215-13458234 Msa1093520:intron 25.0%
! ATACAATATGTTACTGTTTG+AGG - chr7_3:13458345-13458364 None:intergenic 25.0%
!! TTGTAGATTTTATATGGTAC+AGG + chr7_3:13458676-13458695 Msa1093520:intron 25.0%
!! TGATGAATTACGTTTTCATT+TGG + chr7_3:13458853-13458872 Msa1093520:CDS 25.0%
!! GATGAATTACGTTTTCATTT+GGG + chr7_3:13458854-13458873 Msa1093520:CDS 25.0%
!! GGAGTCATAAAGATTAATTT+TGG - chr7_3:13458906-13458925 None:intergenic 25.0%
! GCTTTCTCAGTATATTAAAT+AGG + chr7_3:13458997-13459016 Msa1093520:CDS 25.0%
! TATACTTTGCTCATGTAAAT+TGG + chr7_3:13459096-13459115 Msa1093520:three_prime_UTR 25.0%
!!! ACGACCTAAATTTTAGAATA+AGG - chr7_3:13459634-13459653 None:intergenic 25.0%
! GTATGATAATCAATATTACG+GGG - chr7_3:13459779-13459798 None:intergenic 25.0%
!! CGTAATATTGATTATCATAC+TGG + chr7_3:13459779-13459798 Msa1093520:three_prime_UTR 25.0%
! ACTTATTGATGCAAAAACTA+AGG + chr7_3:13459941-13459960 Msa1093520:three_prime_UTR 25.0%
! AATTGTTATGATTTCTTCGA+TGG + chr7_3:13460032-13460051 Msa1093520:intron 25.0%
! ATTGTTATGATTTCTTCGAT+GGG + chr7_3:13460033-13460052 Msa1093520:intron 25.0%
! AATATACATTCATTTCCATC+AGG - chr7_3:13460470-13460489 None:intergenic 25.0%
! CTATATCAGTAACAATAAGT+CGG - chr7_3:13460624-13460643 None:intergenic 25.0%
! ACTGAAGCAAAAAAAGAAAA+GGG - chr7_3:13460769-13460788 None:intergenic 25.0%
! TACTGAAGCAAAAAAAGAAA+AGG - chr7_3:13460770-13460789 None:intergenic 25.0%
! GATTAAAAAGTTACCAACAA+TGG + chr7_3:13460795-13460814 Msa1093520:intron 25.0%
! TGAATAACATAGTTTCAAAG+AGG - chr7_3:13461010-13461029 None:intergenic 25.0%
! AAGATATAAGAAGATAACCT+TGG - chr7_3:13461214-13461233 None:intergenic 25.0%
! CTGTACTAAAAGAATTACTT+TGG + chr7_3:13461290-13461309 Msa1093520:intron 25.0%
! TACTAAAAGAATTACTTTGG+TGG + chr7_3:13461293-13461312 Msa1093520:intron 25.0%
!!! ATTCTAGGAGTTCATATTTT+TGG + chr7_3:13461463-13461482 Msa1093520:three_prime_UTR 25.0%
!! AAGATGTTGAAAGTACATTA+AGG - chr7_3:13461750-13461769 None:intergenic 25.0%
! CTTATTGAGTATAACTATTC+TGG + chr7_3:13461767-13461786 Msa1093520:intron 25.0%
! TTCTTTAACCTACATTAAGA+GGG - chr7_3:13461846-13461865 None:intergenic 25.0%
! GAAGCCAAAATTTTATTCCT+AGG + chr7_3:13457999-13458018 Msa1093520:CDS 30.0%
TGAACCCCTAAATTTAAATG+TGG - chr7_3:13458213-13458232 None:intergenic 30.0%
!!! GTTTTGAAAGTACTTATGCT+TGG + chr7_3:13458367-13458386 Msa1093520:intron 30.0%
TTAAATGTAACCACATGTGT+TGG + chr7_3:13458484-13458503 Msa1093520:intron 30.0%
CAATGCATATGATTACGTTA+AGG - chr7_3:13458600-13458619 None:intergenic 30.0%
! TAGATTTTATATGGTACAGG+TGG + chr7_3:13458679-13458698 Msa1093520:intron 30.0%
AATGTACCTTTCCTTATCTT+AGG + chr7_3:13458797-13458816 Msa1093520:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG - chr7_3:13458806-13458825 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG - chr7_3:13458811-13458830 None:intergenic 30.0%
TACAAATGCTTTGTGTTTGT+TGG + chr7_3:13459251-13459270 Msa1093520:three_prime_UTR 30.0%
ACAAATGCTTTGTGTTTGTT+GGG + chr7_3:13459252-13459271 Msa1093520:three_prime_UTR 30.0%
! CGTTCAGAAGTCAAATATTT+TGG + chr7_3:13459323-13459342 Msa1093520:three_prime_UTR 30.0%
!!! AAATATTTTGGTTGCAGTGA+TGG + chr7_3:13459335-13459354 Msa1093520:three_prime_UTR 30.0%
!!! GCAGTGATGGTTTTTTTAAT+AGG + chr7_3:13459348-13459367 Msa1093520:three_prime_UTR 30.0%
!!! GTGATGGTTTTTTTAATAGG+AGG + chr7_3:13459351-13459370 Msa1093520:three_prime_UTR 30.0%
TTGCTAATATTTCATTTCGG+AGG + chr7_3:13459558-13459577 Msa1093520:three_prime_UTR 30.0%
TGCTAATATTTCATTTCGGA+GGG + chr7_3:13459559-13459578 Msa1093520:three_prime_UTR 30.0%
AGTAGTTATTGGTATTATGC+AGG + chr7_3:13459670-13459689 Msa1093520:three_prime_UTR 30.0%
! CTTGATCAGTTTTTGTTGAT+CGG + chr7_3:13459841-13459860 Msa1093520:intron 30.0%
TGATCTATAAGGAAAACATG+AGG - chr7_3:13459887-13459906 None:intergenic 30.0%
GAATCAATAACCAAAAGCTT+CGG - chr7_3:13460097-13460116 None:intergenic 30.0%
TGTTGTCTTTACTTTGTTAC+AGG + chr7_3:13460340-13460359 Msa1093520:intron 30.0%
!! TTTCTAGCTGAAATGTGTTT+AGG + chr7_3:13460432-13460451 Msa1093520:intron 30.0%
! TTTTTGCATATTGTTCCTAC+AGG + chr7_3:13460488-13460507 Msa1093520:intron 30.0%
CGACTTATTGTTACTGATAT+AGG + chr7_3:13460622-13460641 Msa1093520:intron 30.0%
CTTATTGTTACTGATATAGG+AGG + chr7_3:13460625-13460644 Msa1093520:intron 30.0%
CTGAAGCAAAAAAAGAAAAG+GGG - chr7_3:13460768-13460787 None:intergenic 30.0%
CTAATGCATGCAGATAAAAA+TGG - chr7_3:13461361-13461380 None:intergenic 30.0%
CTATTAATAGTCTAAATCCC+AGG - chr7_3:13461574-13461593 None:intergenic 30.0%
TGAGCTATTTAAATCAGCAA+AGG + chr7_3:13461711-13461730 Msa1093520:three_prime_UTR 30.0%
! AATTAATGCAGGTGTTACAA+AGG - chr7_3:13461819-13461838 None:intergenic 30.0%
GTTCTTTAACCTACATTAAG+AGG - chr7_3:13461847-13461866 None:intergenic 30.0%
ATTCAGAATCCTGTAAAAGA+AGG + chr7_3:13461997-13462016 Msa1093520:three_prime_UTR 30.0%
TTCAGAATCCTGTAAAAGAA+GGG + chr7_3:13461998-13462017 Msa1093520:three_prime_UTR 30.0%
TCAATACAAGTAACATTCGT+CGG - chr7_3:13462065-13462084 None:intergenic 30.0%
AACTAAACCAGTGATAAACT+AGG - chr7_3:13462207-13462226 None:intergenic 30.0%
GGCTATATTCAGTGTTCTAT+AGG + chr7_3:13458388-13458407 Msa1093520:intron 35.0%
!! CACATGTGTTGGTATTTTGT+CGG + chr7_3:13458495-13458514 Msa1093520:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG + chr7_3:13458953-13458972 Msa1093520:CDS 35.0%
!! TAGTTCTGAAACATGCATGT+AGG + chr7_3:13459157-13459176 Msa1093520:three_prime_UTR 35.0%
TCCTTTGGTTAACAATCTTC+AGG + chr7_3:13459282-13459301 Msa1093520:three_prime_UTR 35.0%
TCCTGAAGATTGTTAACCAA+AGG - chr7_3:13459286-13459305 None:intergenic 35.0%
TGCAGTAATGTTAAGACACT+TGG + chr7_3:13459375-13459394 Msa1093520:three_prime_UTR 35.0%
AGGGACAACTATCATATTGA+GGG - chr7_3:13459429-13459448 None:intergenic 35.0%
GCAAGATTTAGTAGTTACCT+TGG - chr7_3:13459816-13459835 None:intergenic 35.0%
TCAATAAGTTCGATCAAGAC+AGG - chr7_3:13459930-13459949 None:intergenic 35.0%
! AACTTAACTACCGAAGCTTT+TGG + chr7_3:13460084-13460103 Msa1093520:intron 35.0%
! AGCTGAAATGTGTTTAGGAT+AGG + chr7_3:13460437-13460456 Msa1093520:intron 35.0%
! AGGATAGGAAATTTTCCTGA+TGG + chr7_3:13460452-13460471 Msa1093520:intron 35.0%
ATGCGTGTAATTGATGCAAA+TGG + chr7_3:13460555-13460574 Msa1093520:three_prime_UTR 35.0%
AATTGATGCAAATGGAAAGC+TGG + chr7_3:13460563-13460582 Msa1093520:three_prime_UTR 35.0%
ATAGGAGGATGTTGAATGAT+AGG + chr7_3:13460640-13460659 Msa1093520:intron 35.0%
GTACCTCATCTATACTGTAT+TGG + chr7_3:13460662-13460681 Msa1093520:three_prime_UTR 35.0%
TCTCCAATACAGTATAGATG+AGG - chr7_3:13460668-13460687 None:intergenic 35.0%
!! AATCTAACCATGCTGATTTC+AGG - chr7_3:13460889-13460908 None:intergenic 35.0%
TTCTCTTTCATATGTGTGGT+CGG + chr7_3:13460959-13460978 Msa1093520:intron 35.0%
CACATAACAACTTCAACTGA+AGG - chr7_3:13461057-13461076 None:intergenic 35.0%
!!! GAGGCTGCAAATTTTAAGTT+CGG - chr7_3:13461086-13461105 None:intergenic 35.0%
CTGTCAATGCTATTCTGATA+CGG + chr7_3:13461235-13461254 Msa1093520:intron 35.0%
! CTGTCATGACAGAAGAATTT+TGG - chr7_3:13461321-13461340 None:intergenic 35.0%
GCATGCAGATAAAAATGGAT+AGG - chr7_3:13461356-13461375 None:intergenic 35.0%
TTGATATACAGACCTGACAA+TGG + chr7_3:13461436-13461455 Msa1093520:three_prime_UTR 35.0%
CTATAGCATTAGATGCTTCA+TGG - chr7_3:13461510-13461529 None:intergenic 35.0%
GCATCTAATGCTATAGCATT+AGG + chr7_3:13461514-13461533 Msa1093520:three_prime_UTR 35.0%
! CTGCTAAGTTTACCATTTTG+TGG + chr7_3:13461628-13461647 Msa1093520:intron 35.0%
AAATAGCTCATCAAGAACCT+CGG - chr7_3:13461701-13461720 None:intergenic 35.0%
AGCTCTATGGGTGTAAAATT+AGG - chr7_3:13461793-13461812 None:intergenic 35.0%
! TAATTTTACACCCATAGAGC+TGG + chr7_3:13461792-13461811 Msa1093520:intron 35.0%
TAGGGACTTCCAAAATGTTA+CGG + chr7_3:13461949-13461968 Msa1093520:three_prime_UTR 35.0%
CAATACAAGTAACATTCGTC+GGG - chr7_3:13462064-13462083 None:intergenic 35.0%
! ATAAACTAGGCCACTTTCAA+AGG - chr7_3:13462194-13462213 None:intergenic 35.0%
! TTCTTTTTGCCACAGACCAA+GGG - chr7_3:13457982-13458001 None:intergenic 40.0%
TCCTAGGGTTAGATAATGCT+TGG + chr7_3:13458015-13458034 Msa1093520:CDS 40.0%
CCTAGGGTTAGATAATGCTT+GGG + chr7_3:13458016-13458035 Msa1093520:CDS 40.0%
CTCGTGAATCAAATGAATCC+CGG + chr7_3:13458285-13458304 Msa1093520:intron 40.0%
GAATCAAATGAATCCCGGTT+AGG + chr7_3:13458290-13458309 Msa1093520:intron 40.0%
ATATGCGTTACTCTCCTAAC+CGG - chr7_3:13458307-13458326 None:intergenic 40.0%
CGACAAAATACCAACACATG+TGG - chr7_3:13458497-13458516 None:intergenic 40.0%
! TTGGTATTTTGTCGGTGTGT+TGG + chr7_3:13458503-13458522 Msa1093520:intron 40.0%
AGCGTGAATGTAATCATGTG+TGG + chr7_3:13458630-13458649 Msa1093520:intron 40.0%
GCGTGAATGTAATCATGTGT+GGG + chr7_3:13458631-13458650 Msa1093520:intron 40.0%
TCCAGAATCAAAGAAAGAGC+TGG + chr7_3:13458745-13458764 Msa1093520:CDS 40.0%
TCCAGCTCTTTCTTTGATTC+TGG - chr7_3:13458749-13458768 None:intergenic 40.0%
TCATCATCTGATGCAGCATA+AGG - chr7_3:13458839-13458858 None:intergenic 40.0%
GTGTAGTATTGTTCGCAAGA+TGG + chr7_3:13458952-13458971 Msa1093520:CDS 40.0%
ATTGTTCGCAAGATGGGATA+TGG + chr7_3:13458959-13458978 Msa1093520:CDS 40.0%
GAGGGACAACTATCATATTG+AGG - chr7_3:13459430-13459449 None:intergenic 40.0%
TTGAACCATCTTGACAGAGA+GGG - chr7_3:13459448-13459467 None:intergenic 40.0%
! TGGTTCAAGTTCAACACGTT+TGG + chr7_3:13459460-13459479 Msa1093520:three_prime_UTR 40.0%
AACACGTTTGGCAGACAATT+AGG + chr7_3:13459472-13459491 Msa1093520:three_prime_UTR 40.0%
CTGATTTCAGGATCAAATCC+AGG - chr7_3:13459728-13459747 None:intergenic 40.0%
AAATCAGCAAGCTAGCTCAA+AGG + chr7_3:13459741-13459760 Msa1093520:three_prime_UTR 40.0%
AATCAGCAAGCTAGCTCAAA+GGG + chr7_3:13459742-13459761 Msa1093520:three_prime_UTR 40.0%
! TACTGGAGTTTTTGCATCCA+AGG + chr7_3:13459796-13459815 Msa1093520:three_prime_UTR 40.0%
TAAGGAAAACATGAGGACAG+TGG - chr7_3:13459880-13459899 None:intergenic 40.0%
CTTATAGATCACACCTGCAA+GGG + chr7_3:13459896-13459915 Msa1093520:intron 40.0%
TGCAAAAACTAAGGAGCCAA+AGG + chr7_3:13459950-13459969 Msa1093520:three_prime_UTR 40.0%
AAGTCTTAGATTGTCTGCCT+CGG - chr7_3:13460190-13460209 None:intergenic 40.0%
TGCACTAATAGCAACTGGAA+GGG + chr7_3:13460370-13460389 Msa1093520:three_prime_UTR 40.0%
!! ATTGTTCCTACAGGTTGATG+TGG + chr7_3:13460497-13460516 Msa1093520:intron 40.0%
TACTGTATTGGAGACGCAAA+TGG + chr7_3:13460674-13460693 Msa1093520:three_prime_UTR 40.0%
!! GTGACTTGTTCAACCATTGT+TGG - chr7_3:13460811-13460830 None:intergenic 40.0%
ACAATGGTTGAACAAGTCAC+TGG + chr7_3:13460811-13460830 Msa1093520:intron 40.0%
CCACACATATGAAAGAGAAC+TGG - chr7_3:13460958-13460977 None:intergenic 40.0%
CCAGTTCTCTTTCATATGTG+TGG + chr7_3:13460955-13460974 Msa1093520:intron 40.0%
AAAATTTGCAGCCTCAAGCA+AGG + chr7_3:13461091-13461110 Msa1093520:intron 40.0%
AAATTTGCAGCCTCAAGCAA+GGG + chr7_3:13461092-13461111 Msa1093520:intron 40.0%
AAAGCCCTAGCAGAAAATGA+AGG + chr7_3:13461177-13461196 Msa1093520:three_prime_UTR 40.0%
AAGCCCTAGCAGAAAATGAA+GGG + chr7_3:13461178-13461197 Msa1093520:three_prime_UTR 40.0%
!! CGTATCAGAATAGCATTGAC+AGG - chr7_3:13461237-13461256 None:intergenic 40.0%
TAGCATTAGGACACGTATTC+AGG + chr7_3:13461527-13461546 Msa1093520:three_prime_UTR 40.0%
TTTATACCCAGTTATGCACC+TGG + chr7_3:13461553-13461572 Msa1093520:intron 40.0%
TTATACCCAGTTATGCACCT+GGG + chr7_3:13461554-13461573 Msa1093520:intron 40.0%
TAAATCCCAGGTGCATAACT+GGG - chr7_3:13461562-13461581 None:intergenic 40.0%
GGTAAACTTAGCAGATAGAC+AGG - chr7_3:13461622-13461641 None:intergenic 40.0%
! ACCATTTTGTGGTACAATGC+AGG + chr7_3:13461639-13461658 Msa1093520:intron 40.0%
TCCTGCATTGTACCACAAAA+TGG - chr7_3:13461643-13461662 None:intergenic 40.0%
TTACAAAGGACCAGCTCTAT+GGG - chr7_3:13461805-13461824 None:intergenic 40.0%
! CTGCAACTGGTTCACTTAAT+GGG - chr7_3:13461880-13461899 None:intergenic 40.0%
! ACTGCAACTGGTTCACTTAA+TGG - chr7_3:13461881-13461900 None:intergenic 40.0%
! CCTGAAGATCCGTAACATTT+TGG - chr7_3:13461961-13461980 None:intergenic 40.0%
CCAAAATGTTACGGATCTTC+AGG + chr7_3:13461958-13461977 Msa1093520:three_prime_UTR 40.0%
AAATGTTACGGATCTTCAGG+CGG + chr7_3:13461961-13461980 Msa1093520:three_prime_UTR 40.0%
! AAACGGTTCCCTTCTTTTAC+AGG - chr7_3:13462009-13462028 None:intergenic 40.0%
AAAAGAAGGGAACCGTTTGA+AGG + chr7_3:13462011-13462030 Msa1093520:three_prime_UTR 40.0%
GATTGCCACTGATCTGATAA+TGG + chr7_3:13462035-13462054 Msa1093520:three_prime_UTR 40.0%
GGTATCCATTATCAGATCAG+TGG - chr7_3:13462043-13462062 None:intergenic 40.0%
CCTTCTCGATAACTACAACT+AGG - chr7_3:13462171-13462190 None:intergenic 40.0%
CCTAGTTGTAGTTATCGAGA+AGG + chr7_3:13462168-13462187 Msa1093520:three_prime_UTR 40.0%
AAAGTGGCCTAGTTTATCAC+TGG + chr7_3:13462197-13462216 Msa1093520:three_prime_UTR 40.0%
TATGGAATTCTTGCCACCCT+TGG + chr7_3:13457963-13457982 Msa1093520:CDS 45.0%
! CTTCTTTTTGCCACAGACCA+AGG - chr7_3:13457983-13458002 None:intergenic 45.0%
CCCAAGCATTATCTAACCCT+AGG - chr7_3:13458019-13458038 None:intergenic 45.0%
AGGGTTAGATAATGCTTGGG+TGG + chr7_3:13458019-13458038 Msa1093520:CDS 45.0%
ACCAAATTGCTCGTAGAGTC+TGG + chr7_3:13458044-13458063 Msa1093520:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG - chr7_3:13458048-13458067 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG + chr7_3:13458047-13458066 Msa1093520:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG + chr7_3:13458048-13458067 Msa1093520:intron 45.0%
TATGCGTTACTCTCCTAACC+GGG - chr7_3:13458306-13458325 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG - chr7_3:13458425-13458444 None:intergenic 45.0%
CCTTGTCAAATGCATCAACC+AGG - chr7_3:13458718-13458737 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG + chr7_3:13458715-13458734 Msa1093520:CDS 45.0%
CTTCTTGCTGATGAGTCACT+AGG + chr7_3:13458773-13458792 Msa1093520:CDS 45.0%
GGCTTGACTAACTTCACTAC+AGG + chr7_3:13458875-13458894 Msa1093520:CDS 45.0%
GACTAACTTCACTACAGGCA+AGG + chr7_3:13458880-13458899 Msa1093520:CDS 45.0%
ACATGAACACCTCCAAAGGA+CGG - chr7_3:13458934-13458953 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG - chr7_3:13458938-13458957 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG + chr7_3:13458975-13458994 Msa1093520:CDS 45.0%
CTTGAACCATCTTGACAGAG+AGG - chr7_3:13459449-13459468 None:intergenic 45.0%
! GCTTTAGATCAGCTTATGCC+TGG + chr7_3:13459707-13459726 Msa1093520:three_prime_UTR 45.0%
!! TGAGCTAGCTTGCTGATTTC+AGG - chr7_3:13459740-13459759 None:intergenic 45.0%
CCTTGCAGGTGTGATCTATA+AGG - chr7_3:13459898-13459917 None:intergenic 45.0%
CCTTATAGATCACACCTGCA+AGG + chr7_3:13459895-13459914 Msa1093520:intron 45.0%
TAAGGAGCCAAAGGACACTT+TGG + chr7_3:13459959-13459978 Msa1093520:three_prime_UTR 45.0%
! GTTACCTCCAAAGTGTCCTT+TGG - chr7_3:13459969-13459988 None:intergenic 45.0%
GATGCTGCACTAATAGCAAC+TGG + chr7_3:13460365-13460384 Msa1093520:three_prime_UTR 45.0%
CTGCACTAATAGCAACTGGA+AGG + chr7_3:13460369-13460388 Msa1093520:three_prime_UTR 45.0%
AGTCCTAGACCTTGTGTGAA+TGG - chr7_3:13460398-13460417 None:intergenic 45.0%
! ATTCACACAAGGTCTAGGAC+TGG + chr7_3:13460397-13460416 Msa1093520:three_prime_UTR 45.0%
TGAAATTCCTTGTGCACTGG+CGG - chr7_3:13460720-13460739 None:intergenic 45.0%
ACCTGAAATTCCTTGTGCAC+TGG - chr7_3:13460723-13460742 None:intergenic 45.0%
! GTGCACAAGGAATTTCAGGT+AGG + chr7_3:13460723-13460742 Msa1093520:intron 45.0%
! CACAAGGAATTTCAGGTAGG+TGG + chr7_3:13460726-13460745 Msa1093520:intron 45.0%
GATGAGTGAAACATGCAGCT+GGG - chr7_3:13460867-13460886 None:intergenic 45.0%
CACTCATCCTGAAATCAGCA+TGG + chr7_3:13460879-13460898 Msa1093520:three_prime_UTR 45.0%
CAGCATGGTTAGATTGACAG+AGG + chr7_3:13460894-13460913 Msa1093520:three_prime_UTR 45.0%
AGCAAGGGAGAAAGGTGAAA+AGG + chr7_3:13461107-13461126 Msa1093520:three_prime_UTR 45.0%
AAGGGAGAAAGGTGAAAAGG+AGG + chr7_3:13461110-13461129 Msa1093520:three_prime_UTR 45.0%
AGGGAGAAAGGTGAAAAGGA+GGG + chr7_3:13461111-13461130 Msa1093520:three_prime_UTR 45.0%
AGCCCTAGCAGAAAATGAAG+GGG + chr7_3:13461179-13461198 Msa1093520:three_prime_UTR 45.0%
! CTCCCCTTCATTTTCTGCTA+GGG - chr7_3:13461184-13461203 None:intergenic 45.0%
CTAGCAGAAAATGAAGGGGA+GGG + chr7_3:13461183-13461202 Msa1093520:three_prime_UTR 45.0%
CCTAGAATCTCTCCATTGTC+AGG - chr7_3:13461451-13461470 None:intergenic 45.0%
CCTGACAATGGAGAGATTCT+AGG + chr7_3:13461448-13461467 Msa1093520:three_prime_UTR 45.0%
CTAAATCCCAGGTGCATAAC+TGG - chr7_3:13461563-13461582 None:intergenic 45.0%
GTTACAAAGGACCAGCTCTA+TGG - chr7_3:13461806-13461825 None:intergenic 45.0%
AATTCGCGCCCTCTTAATGT+AGG + chr7_3:13461835-13461854 Msa1093520:intron 45.0%
TGGGAAGATTAGACTGCAAC+TGG - chr7_3:13461893-13461912 None:intergenic 45.0%
CAGTGGCAATCTCCTTCAAA+CGG - chr7_3:13462026-13462045 None:intergenic 45.0%
! ATCGAGAAGGCCTTTGAAAG+TGG + chr7_3:13462181-13462200 Msa1093520:three_prime_UTR 45.0%
! TTTTTGCCACAGACCAAGGG+TGG - chr7_3:13457979-13457998 None:intergenic 50.0%
TGACTCCAATGTCCGTCCTT+TGG + chr7_3:13458919-13458938 Msa1093520:CDS 50.0%
CGCAAGATGGGATATGGTGA+AGG + chr7_3:13458965-13458984 Msa1093520:CDS 50.0%
TTGTTGGGCAGTGCTTCCTT+TGG + chr7_3:13459267-13459286 Msa1093520:three_prime_UTR 50.0%
GTTGTCCCTCTCTGTCAAGA+TGG + chr7_3:13459440-13459459 Msa1093520:three_prime_UTR 50.0%
TAGATCACACCTGCAAGGGA+TGG + chr7_3:13459900-13459919 Msa1093520:intron 50.0%
! ACAGGTTTTCCATCCCTTGC+AGG - chr7_3:13459912-13459931 None:intergenic 50.0%
CGCATAAGCGCTTGATGTAC+TGG + chr7_3:13460130-13460149 Msa1093520:intron 50.0%
GCTCCATTCACACAAGGTCT+AGG + chr7_3:13460392-13460411 Msa1093520:three_prime_UTR 50.0%
GTGTTGCCACATCAACCTGT+AGG - chr7_3:13460506-13460525 None:intergenic 50.0%
GCCAGTGCACAAGGAATTTC+AGG + chr7_3:13460719-13460738 Msa1093520:three_prime_UTR 50.0%
GGATGAGTGAAACATGCAGC+TGG - chr7_3:13460868-13460887 None:intergenic 50.0%
TCACCTTTCTCCCTTGCTTG+AGG - chr7_3:13461105-13461124 None:intergenic 50.0%
! CCTCCCCTTCATTTTCTGCT+AGG - chr7_3:13461185-13461204 None:intergenic 50.0%
CCTAGCAGAAAATGAAGGGG+AGG + chr7_3:13461182-13461201 Msa1093520:three_prime_UTR 50.0%
TCAAGAACCTCGGACAGAGT+TGG - chr7_3:13461691-13461710 None:intergenic 50.0%
! AAGAGGGCGCGAATTAATGC+AGG - chr7_3:13461830-13461849 None:intergenic 50.0%
TTCTTGCCACCCTTGGTCTG+TGG + chr7_3:13457970-13457989 Msa1093520:CDS 55.0%
CTGGAGGGACTATTACGCTC+AGG + chr7_3:13458063-13458082 Msa1093520:intron 55.0%
GGTGGATGCTGTAGTCTACC+TGG + chr7_3:13458697-13458716 Msa1093520:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG + chr7_3:13458922-13458941 Msa1093520:CDS 55.0%
CACCTCCAAAGGACGGACAT+TGG - chr7_3:13458927-13458946 None:intergenic 55.0%
GGAGCCAAAGGACACTTTGG+AGG + chr7_3:13459962-13459981 Msa1093520:three_prime_UTR 55.0%
GAGTTCATGAAGCTGCACCG+AGG + chr7_3:13460170-13460189 Msa1093520:intron 55.0%
GGAAGGGCTCCATTCACACA+AGG + chr7_3:13460386-13460405 Msa1093520:three_prime_UTR 55.0%
GTTGATGTGGCAACACAGCG+AGG + chr7_3:13460510-13460529 Msa1093520:three_prime_UTR 55.0%
!! ACAGCGAGGCTTTGTTCCTG+TGG + chr7_3:13460524-13460543 Msa1093520:three_prime_UTR 55.0%
CAGCCTCAAGCAAGGGAGAA+AGG + chr7_3:13461099-13461118 Msa1093520:intron 55.0%
TGCACATCCAACTCTGTCCG+AGG + chr7_3:13461681-13461700 Msa1093520:three_prime_UTR 55.0%
TGAAGGGGAGGGACTTGCCA+AGG + chr7_3:13461194-13461213 Msa1093520:three_prime_UTR 60.0%
ACACGCATGCGCTCGTCCAC+AGG - chr7_3:13460543-13460562 None:intergenic 65.0%
GCTCATGCCGCCAGTGCACA+AGG + chr7_3:13460710-13460729 Msa1093520:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 13457942 13462290 13457942 ID=Msa1093520;Name=Msa1093520
chr7_3 mRNA 13457942 13462290 13457942 ID=Msa1093520-mRNA-1;Parent=Msa1093520;Name=Msa1093520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.90|0.91|1|0.54|0.5|12|1899|144
chr7_3 exon 13457942 13458055 13457942 ID=Msa1093520-mRNA-1:exon:3155;Parent=Msa1093520-mRNA-1
chr7_3 exon 13458698 13459412 13458698 ID=Msa1093520-mRNA-1:exon:3156;Parent=Msa1093520-mRNA-1
chr7_3 exon 13459433 13459817 13459433 ID=Msa1093520-mRNA-1:exon:3157;Parent=Msa1093520-mRNA-1
chr7_3 exon 13459903 13459983 13459903 ID=Msa1093520-mRNA-1:exon:3158;Parent=Msa1093520-mRNA-1
chr7_3 exon 13460362 13460424 13460362 ID=Msa1093520-mRNA-1:exon:3159;Parent=Msa1093520-mRNA-1
chr7_3 exon 13460510 13460584 13460510 ID=Msa1093520-mRNA-1:exon:3160;Parent=Msa1093520-mRNA-1
chr7_3 exon 13460662 13460740 13460662 ID=Msa1093520-mRNA-1:exon:3161;Parent=Msa1093520-mRNA-1
chr7_3 exon 13460827 13460915 13460827 ID=Msa1093520-mRNA-1:exon:3162;Parent=Msa1093520-mRNA-1
chr7_3 exon 13461102 13461215 13461102 ID=Msa1093520-mRNA-1:exon:3163;Parent=Msa1093520-mRNA-1
chr7_3 exon 13461436 13461548 13461436 ID=Msa1093520-mRNA-1:exon:3164;Parent=Msa1093520-mRNA-1
chr7_3 exon 13461661 13461732 13461661 ID=Msa1093520-mRNA-1:exon:3165;Parent=Msa1093520-mRNA-1
chr7_3 exon 13461857 13462290 13461857 ID=Msa1093520-mRNA-1:exon:3166;Parent=Msa1093520-mRNA-1
chr7_3 CDS 13457942 13458055 13457942 ID=Msa1093520-mRNA-1:cds;Parent=Msa1093520-mRNA-1
chr7_3 CDS 13458698 13459018 13458698 ID=Msa1093520-mRNA-1:cds;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13459019 13459412 13459019 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13459433 13459817 13459433 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13459903 13459983 13459903 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13460362 13460424 13460362 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13460510 13460584 13460510 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13460662 13460740 13460662 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13460827 13460915 13460827 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13461102 13461215 13461102 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13461436 13461548 13461436 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13461661 13461732 13461661 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
chr7_3 three_prime_UTR 13461857 13462290 13461857 ID=Msa1093520-mRNA-1:three_prime_utr;Parent=Msa1093520-mRNA-1
Gene Sequence

>Msa1093520

ATGTTTCTTTTTGATTGGTTTTATGGAATTCTTGCCACCCTTGGTCTGTGGCAAAAAGAAGCCAAAATTTTATTCCTAGGGTTAGATAATGCTTGGGTGGTCACCAAATTGCTCGTGGATGCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAATCAAAGAAAGAGCTGGATGCTCTTCTTGCTGATGAGTCACTAGGAAATGTACCTTTCCTTATCTTAGGAAACAAGATTGACATTCCTTATGCTGCATCAGATGATGAATTACGTTTTCATTTGGGCTTGACTAACTTCACTACAGGCAAGGCCAAAATTAATCTTTATGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGTAGTATTGTTCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTTTCTCAGTATATTAAATAG
Protein sequence

>Msa1093520

MFLFDWFYGILATLGLWQKEAKILFLGLDNAWVVTKLLVDAVVYLVDAFDKERFPESKKELDALLADESLGNVPFLILGNKIDIPYAASDDELRFHLGLTNFTTGKAKINLYDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK*