AlfalfaGEDB | Msa1019120

M. sativa cultivar zhongmu-4 / Msa1019120

KEGG: K20714
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019120	XP_013448506.1	96.495	428	14	1	1	428	1	427	0.0	843

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019120	sp\|Q9LSF1\|OXI1_ARATH	51.044	431	182	10	7	428	11	421	1.43e-133	393

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019120	A0A072U073	96.495	428	14	1	1	428	1	427	0.0	843

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0538160	Msa1019120	0.848939	4.452667e-60	-8.615850e-47
Msa0663520	Msa1019120	0.837241	5.837188e-57	-8.615850e-47
Msa1019120	Msa1147680	0.883890	3.057146e-71	-8.615850e-47
Msa1019120	Msa1359320	0.801033	1.089840e-48	-8.615850e-47
Msa1019120	Msa1397670	0.868597	5.803130e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019120	MtrunA17_Chr7g0234641	96.495	428	14	1	1	428	1	427	0.0	843
Msa1019120	MtrunA17_Chr8g0338741	63.158	380	132	5	7	380	14	391	8.37e-170	483
Msa1019120	MtrunA17_Chr4g0032761	39.018	387	211	8	8	375	10	390	7.89e-93	286
Msa1019120	MtrunA17_Chr2g0329011	42.165	351	169	7	8	353	12	333	5.05e-88	272
Msa1019120	MtrunA17_Chr1g0179101	39.516	372	194	9	1	353	462	821	3.17e-75	251
Msa1019120	MtrunA17_Chr2g0309421	38.692	367	192	11	8	353	172	526	1.82e-73	240
Msa1019120	MtrunA17_Chr7g0266031	39.410	373	195	10	1	354	484	844	3.78e-73	246
Msa1019120	MtrunA17_Chr2g0285711	36.438	365	200	10	8	353	74	425	4.73e-73	236
Msa1019120	MtrunA17_Chr8g0381091	36.074	377	189	11	7	353	69	423	1.47e-70	229
Msa1019120	MtrunA17_Chr3g0080101	37.135	377	196	11	3	354	409	769	2.13e-70	237

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1019120	AT3G25250.1	51.044	431	182	10	7	428	11	421	1.46e-134	393
Msa1019120	AT4G13000.1	56.183	372	136	7	7	376	14	360	9.11e-133	387
Msa1019120	AT1G51170.1	39.295	369	192	8	8	362	17	367	1.55e-83	262
Msa1019120	AT3G20830.1	39.779	362	188	8	6	353	14	359	4.11e-83	261
Msa1019120	AT3G12690.1	38.874	373	181	9	5	353	177	526	2.65e-76	248
Msa1019120	AT3G12690.3	38.874	373	181	9	5	353	177	526	2.65e-76	248
Msa1019120	AT3G12690.2	38.874	373	181	9	5	353	177	526	2.65e-76	248
Msa1019120	AT2G34650.1	37.534	365	196	9	8	358	70	416	1.59e-75	242
Msa1019120	AT5G03640.2	38.281	384	185	11	3	353	531	895	6.09e-74	249
Msa1019120	AT5G03640.1	38.281	384	185	11	3	353	531	895	6.09e-74	249

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Find 79 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGTTCGTGGGAACTG+AGG	0.645067	7_1:-40272148	Msa1019120:CDS
AACAATGGAGGTTGAACAAA+AGG	0.379746	7_1:-40271980	Msa1019120:CDS
AAGGGTCATGATTTCTTTAA+AGG	0.154605	7_1:-40271877	Msa1019120:CDS
AATACGGTTTCGGAGGTACG+AGG	0.633706	7_1:-40273521	Msa1019120:five_prime_UTR
AATATCATGATTCAACAAAC+GGG	0.512643	7_1:-40272414	Msa1019120:CDS
AATGAAGTTGAGGACAAAGC+TGG	0.476617	7_1:-40271802	Msa1019120:CDS
AATTCTCTGAAGAAACCATC+AGG	0.520550	7_1:-40273133	Msa1019120:intron
ACAATGGAGGTTGAACAAAA+GGG	0.583595	7_1:-40271979	Msa1019120:CDS
ACCCTTTGCGCCACGACCGA+CGG	0.506004	7_1:+40273430	None:intergenic
ACCTCTGCCATGAATCACGG+CGG	0.774611	7_1:-40273491	Msa1019120:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATCATGATTTGAGAGA+TGG	-	chr7_1:40272482-40272501	Msa1019120:CDS	30.0%
TGTTGAATCATGATATTCTC+TGG	+	chr7_1:40272707-40272726	None:intergenic	30.0%
TGACTCAATGATTCGAATTT+CGG	+	chr7_1:40272902-40272921	None:intergenic	30.0%
TTCCTATTTGGACTACTAAA+CGG	+	chr7_1:40273103-40273122	None:intergenic	30.0%
TGAAACGTTTCTTTCCTATT+TGG	+	chr7_1:40273115-40273134	None:intergenic	30.0%
AAGGGTCATGATTTCTTTAA+AGG	-	chr7_1:40273247-40273266	Msa1019120:CDS	30.0%
ACTTCATTCTGTGGAATATA+CGG	+	chr7_1:40273310-40273329	None:intergenic	30.0%
ATGAGGTAAAAAAAGAAGAG+GGG	-	chr7_1:40273428-40273447	Msa1019120:CDS	30.0%
AACAATCATGATTTGAGAGA+TGG	-	chr7_1:40272482-40272501	Msa1019120:CDS	30.0%
TGTTGAATCATGATATTCTC+TGG	+	chr7_1:40272707-40272726	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	40271600	40273546	40271600	ID=Msa1019120;Name=Msa1019120
chr7_1	mRNA	40271600	40273546	40271600	ID=Msa1019120-mRNA-1;Parent=Msa1019120;Name=Msa1019120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=42\|1\|0.5\|1\|1\|1\|2\|0\|428
chr7_1	exon	40271600	40272515	40271600	ID=Msa1019120-mRNA-1:exon:7807;Parent=Msa1019120-mRNA-1
chr7_1	exon	40273134	40273546	40273134	ID=Msa1019120-mRNA-1:exon:7806;Parent=Msa1019120-mRNA-1
chr7_1	five_prime_UTR	40273505	40273546	40273505	ID=Msa1019120-mRNA-1:five_prime_utr;Parent=Msa1019120-mRNA-1
chr7_1	CDS	40273134	40273504	40273134	ID=Msa1019120-mRNA-1:cds;Parent=Msa1019120-mRNA-1
chr7_1	CDS	40271600	40272515	40271600	ID=Msa1019120-mRNA-1:cds;Parent=Msa1019120-mRNA-1

Gene Sequence

>Msa1019120

ATGAATCACGGCGGCGATACATTGGACTTCCGAAACCTTAAAATTTTATCCGCCGTCGGTCGTGGCGCAAAGGGTGTCGTGTTTCTTTCAAGAACCTACGGATCATCGAAAGAAGAATGGTTGGCATTGAAAGTGATATCTAAAGAGCTTCTTTTGAGGAAAAATAATGGAAAGAATGGTGGTGAATGCAAAAGGGTGAAATTTGAACAACAAATACTACGTCGTTTTGATCATCCTCTCTTGCCTAGGTTTAAAGGAGCTTTTCAAACTGAAAAGCTTATTGGATTTGCTATTGATTATTGTCATGGTGGGAATTTGCATTCTCTTAGAAAGAAACAACCTGAGAAAAAATTCTCTGAAGAAACCATCAGGTTTTATGCAGTGGAATTGGTGTTAGCATTGGAGTATCTACACAATTTAGGAGTAGTTTATAGAGATTTGAAGCCAGAGAATATCATGATTCAACAAACGGGTCACATAATGATCGTAGATTTCGACCTGTCAAAGAAATTAAATCCAAAATCACCAAACTCGTTGAGTTCCAACTCGTCACCAGGTTCCAACTCACCACCAAATACGAAAAACAGAAGGAAGAGATGGTTATCAAAGTTCTATTCTTGTAATACCTATGTTGGGAAACCGAAATTCGAATCATTGAGTCAAATCGATATCAACTCGGTTTGTAAAAGGAGTGAGTCAGACTCAGTTGAAAAGTCAAACTCGTTCGTGGGAACTGAGGATTACGTGGCACCTGAAGTTATATTAGGGAATGGACATAATTTTGGTGTTGATTGGTGGTCATTTGGCGTCGTTTTGTATGAGTTGTTTTATGGAACGACGCCGTTTAGTAGTCCAAATAGGAAAGAAACGTTTCACAAGATTTTAACAATGGAGGTTGAACAAAAGGGTGAATCAACACCGTTGAAGGACTTGATTGCAAAGTTGCTTGAGAAAGATCCCGATCGAAGGATTGAAGTTGATGAAATAAAGGGTCATGATTTCTTTAAAGGTGTGAAGTGGAATACGGTGTTGCATATTGTGCGTCCACCGTATATTCCACAGAATGAAGTTGAGGACAAAGCTGGGTTTTCGAGAAAAGATGTTGAGTCCTTTGTACATGGAATATTTTTTCCAAAGAATAAAAGTAAGAGTGAGAAAGAGAAAAATAATGAGGTAAAAAAAGAAGAGGGGAATGAGAAGAAGGAAGAGAATGATAATAATAAGAATGTGTGGGTTGAGAAGTTGAGTCAGACACAAACTAAGGATGAAAATTTTTTGATTTTTTGA

Protein sequence

>Msa1019120

MNHGGDTLDFRNLKILSAVGRGAKGVVFLSRTYGSSKEEWLALKVISKELLLRKNNGKNGGECKRVKFEQQILRRFDHPLLPRFKGAFQTEKLIGFAIDYCHGGNLHSLRKKQPEKKFSEETIRFYAVELVLALEYLHNLGVVYRDLKPENIMIQQTGHIMIVDFDLSKKLNPKSPNSLSSNSSPGSNSPPNTKNRRKRWLSKFYSCNTYVGKPKFESLSQIDINSVCKRSESDSVEKSNSFVGTEDYVAPEVILGNGHNFGVDWWSFGVVLYELFYGTTPFSSPNRKETFHKILTMEVEQKGESTPLKDLIAKLLEKDPDRRIEVDEIKGHDFFKGVKWNTVLHIVRPPYIPQNEVEDKAGFSRKDVESFVHGIFFPKNKSKSEKEKNNEVKKEEGNEKKEENDNNKNVWVEKLSQTQTKDENFLIF*