AlfalfaGEDB | Msa0538160

M. sativa cultivar zhongmu-4 / Msa0538160

KEGG: -
GO: GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538160	AEI83414.1	99.054	317	0	1	1	314	1	317	0.0	641

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538160	sp\|Q9SAH7\|WRK40_ARATH	51.724	319	120	7	4	314	6	298	2.12e-95	287

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538160	F8V2K9	99.054	317	0	1	1	314	1	317	0.0	641

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0538160	TF	WRKY

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa0538160	0.811102	8.282232e-51	-8.615850e-47
Msa0033850	Msa0538160	0.819079	1.401939e-52	-8.615850e-47
Msa0045550	Msa0538160	0.811355	7.298296e-51	-8.615850e-47
Msa0055070	Msa0538160	0.801160	1.026420e-48	-8.615850e-47
Msa0071480	Msa0538160	0.811634	6.345632e-51	-8.615850e-47
Msa0081940	Msa0538160	0.806121	9.593036e-50	-8.615850e-47
Msa0082050	Msa0538160	0.801646	8.163679e-49	-8.615850e-47
Msa0090390	Msa0538160	0.801869	7.346360e-49	-8.615850e-47
Msa0101020	Msa0538160	0.806665	7.366116e-50	-8.615850e-47
Msa0119440	Msa0538160	0.823791	1.144939e-53	-8.615850e-47

Showing 1 to 10 of 88 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538160	MtrunA17_Chr4g0001361	97.792	317	4	1	1	314	1	317	0.0	634
Msa0538160	MtrunA17_Chr2g0333851	57.099	324	114	9	4	314	5	316	2.94e-108	317
Msa0538160	MtrunA17_Chr3g0136961	47.619	315	121	13	7	311	6	286	7.78e-74	229
Msa0538160	MtrunA17_Chr1g0150281	46.209	277	121	8	43	311	20	276	1.80e-63	202
Msa0538160	MtrunA17_Chr1g0150271	37.500	264	128	6	45	307	6	233	1.05e-42	147
Msa0538160	MtrunA17_Chr7g0270831	30.719	306	156	9	51	307	100	398	1.34e-36	135
Msa0538160	MtrunA17_Chr2g0288871	34.649	228	102	5	43	223	139	366	8.06e-35	132
Msa0538160	MtrunA17_Chr4g0075201	29.365	252	138	5	6	223	83	328	2.34e-31	122
Msa0538160	MtrunA17_Chr3g0099641	33.654	208	93	5	145	307	234	441	1.02e-29	117
Msa0538160	MtrunA17_Chr2g0322391	25.722	381	158	9	51	307	173	552	3.24e-27	111

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538160	AT1G80840.1	51.724	319	120	7	4	314	6	298	2.16e-96	287
Msa0538160	AT4G31800.1	45.566	327	140	5	1	311	1	305	8.78e-81	248
Msa0538160	AT2G25000.1	42.208	308	129	7	12	313	4	268	8.04e-65	205
Msa0538160	AT4G31800.2	45.000	260	107	4	68	311	1	240	4.99e-63	200
Msa0538160	AT2G25000.2	44.030	268	103	6	51	314	2	226	1.00e-60	193
Msa0538160	AT2G25000.4	44.030	268	103	6	51	314	2	226	1.00e-60	193
Msa0538160	AT2G25000.3	44.195	267	102	6	51	313	24	247	5.20e-60	192
Msa0538160	AT4G31800.3	48.837	215	92	3	1	199	1	213	1.09e-56	183
Msa0538160	AT1G62300.1	30.686	277	126	7	50	260	159	435	2.44e-32	126
Msa0538160	AT4G01720.1	32.178	202	111	4	48	223	99	300	7.62e-28	113

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

Find 79 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATTTGGTGGAACAAA+TGG	0.417985	4_1:-17294646	Msa0538160:CDS
AAATTTCAAGAGCTTATGTT+AGG	0.384990	4_1:-17295629	Msa0538160:CDS
AACATAAGCTCTTGAAATTT+TGG	0.096984	4_1:+17295632	None:intergenic
AACCTTAGAAAACAAGAAAT+TGG	0.335631	4_1:-17295886	Msa0538160:CDS
AACTTCTTCATGAGCTCTAT+AGG	0.350958	4_1:+17296670	None:intergenic
AAGAATCGTGTAAGAAACCA+AGG	0.593473	4_1:-17295674	Msa0538160:CDS
AAGATAAGAGAAGTGGCTTA+AGG	0.436349	4_1:+17296833	None:intergenic
AATAACAATAGTAATTTGAT+TGG	0.348469	4_1:-17295735	Msa0538160:CDS
AATATTAAAGATAAGAGAAG+TGG	0.546755	4_1:+17296826	None:intergenic
AATTGGAGGAGGAATTGAGA+AGG	0.543648	4_1:-17295911	Msa0538160:CDS

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCATATATCAACACTTCCT+TGG	-	chr4_1:17294550-17294569	Msa0538160:exon	30.0%
ATAGTGCATACTTCAACAAT+TGG	+	chr4_1:17294948-17294967	None:intergenic	30.0%
CTTGTTTACATAAGCTATCT+TGG	-	chr4_1:17295047-17295066	Msa0538160:intron	30.0%
GTCAGTAGATAAACTCAAAT+AGG	-	chr4_1:17295137-17295156	Msa0538160:intron	30.0%
CTTAGAAAACAAGAAATTGG+TGG	-	chr4_1:17295375-17295394	Msa0538160:intron	30.0%
TAAGCACATCATCAAAGAAA+AGG	-	chr4_1:17295482-17295501	Msa0538160:intron	30.0%
TTTCTTACACGATTCTTCAT+CGG	+	chr4_1:17295581-17295600	None:intergenic	30.0%
ATTTGTTCCACCAAATTCTT+TGG	+	chr4_1:17296613-17296632	None:intergenic	30.0%
ATTGGTGCACAATAATTAAG+AGG	-	chr4_1:17296696-17296715	Msa0538160:CDS	30.0%
AAGATAAGAGAAGTGGCTTA+AGG	+	chr4_1:17294428-17294447	None:intergenic	35.0%

Showing 1 to 10 of 147 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	17294256	17297024	17294256	ID=Msa0538160;Name=Msa0538160
chr4_1	mRNA	17294256	17297024	17294256	ID=Msa0538160-mRNA-1;Parent=Msa0538160;Name=Msa0538160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=283\|1\|1\|1\|1\|1\|5\|310\|314
chr4_1	exon	17294256	17294916	17294256	ID=Msa0538160-mRNA-1:exon:5188;Parent=Msa0538160-mRNA-1
chr4_1	exon	17295235	17295351	17295235	ID=Msa0538160-mRNA-1:exon:5187;Parent=Msa0538160-mRNA-1
chr4_1	exon	17295605	17295943	17295605	ID=Msa0538160-mRNA-1:exon:5186;Parent=Msa0538160-mRNA-1
chr4_1	exon	17296496	17296558	17296496	ID=Msa0538160-mRNA-1:exon:5185;Parent=Msa0538160-mRNA-1
chr4_1	exon	17296667	17297024	17296667	ID=Msa0538160-mRNA-1:exon:5184;Parent=Msa0538160-mRNA-1
chr4_1	five_prime_UTR	17296742	17297024	17296742	ID=Msa0538160-mRNA-1:five_prime_utr;Parent=Msa0538160-mRNA-1
chr4_1	CDS	17296667	17296741	17296667	ID=Msa0538160-mRNA-1:cds;Parent=Msa0538160-mRNA-1
chr4_1	CDS	17296496	17296558	17296496	ID=Msa0538160-mRNA-1:cds;Parent=Msa0538160-mRNA-1
chr4_1	CDS	17295605	17295943	17295605	ID=Msa0538160-mRNA-1:cds;Parent=Msa0538160-mRNA-1
chr4_1	CDS	17295235	17295351	17295235	ID=Msa0538160-mRNA-1:cds;Parent=Msa0538160-mRNA-1
chr4_1	CDS	17294566	17294916	17294566	ID=Msa0538160-mRNA-1:cds;Parent=Msa0538160-mRNA-1
chr4_1	three_prime_UTR	17294256	17294565	17294256	ID=Msa0538160-mRNA-1:three_prime_utr;Parent=Msa0538160-mRNA-1

Gene Sequence

>Msa0538160

ATGGATTGTTCATCATATATCAACACTTCCTTGGATCTCAACATTATTCCCTATAGAGCTCATGAAGAAGTTCCTAAGAAAGAGGTGGAAAGCAACTTTTTCTCCTTGGGGATGACCAACTTTGCTGTGAAAGATGAGTCCATCGATGAATTGGAGGAGGAATTGAGAAGGGTAACCTTAGAAAACAAGAAATTGGTGGAAATGCTCTCAGTGGTTTGTGAGAATTACAACACTTTGAGAAGTCATTTGATGGAATACATGAAGAGAAATCCTGAGAAAGAAGTAAGCACATCATCAAAGAAAAGGAAATCTGAAAGCAGCAATAATAACAATAGTAATTTGATTGGAATTAACAATGGAAATTCCGAGAGTAGCTCTACCGATGAAGAATCGTGTAAGAAACCAAGGGAAGAAGAAAATATTAAAGCCAAAATTTCAAGAGCTTATGTTAGGACTGAAGCTTCTGATACAGGCCTTATTGTGAAGGATGGATATCATTGGAGGAAATATGGACAAAAAGTAACCAGAGATAACCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTAGATGATCAATCCATGCTTGTTGCTACTTATGAAGGGGAGCACAATCATCCTCAACCTCCTCAAATTGAGTCAACATCTGGTTCTGGCCGTAGCGTGAACCACAGTTCGGTACCTTGTTCGGCGTCCCTCACCTCACCAGCAGCACCAAAAGTGGTTACACTAGACTCAACAACTTCTAAGAATAGTAAAGATTCCAAGAGTATTGAACCAAGAAAAGATTCACCTAAGGTACCAAAGAATTTGGTGGAACAAATGGCTACTTCATTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATTTCAGGAAGATTGGTGCACAATAATTAA

Protein sequence

>Msa0538160

MDCSSYINTSLDLNIIPYRAHEEVPKKEVESNFFSLGMTNFAVKDESIDELEEELRRVTLENKKLVEMLSVVCENYNTLRSHLMEYMKRNPEKEVSTSSKKRKSESSNNNNSNLIGINNGNSESSSTDEESCKKPREEENIKAKISRAYVRTEASDTGLIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPPQIESTSGSGRSVNHSSVPCSASLTSPAAPKVVTLDSTTSKNSKDSKSIEPRKDSPKVPKNLVEQMATSLTTDPNFRAALVAAISGRLVHNN*