Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019400 | XP_039684246.1 | 91.632 | 239 | 12 | 1 | 1 | 239 | 1 | 231 | 9.53e-133 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019400 | sp|Q56XP9|ERFL1_ARATH | 67.708 | 96 | 30 | 1 | 108 | 202 | 109 | 204 | 2.49e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019400 | A0A072U9S6 | 89.121 | 239 | 11 | 2 | 1 | 239 | 1 | 224 | 6.88e-126 | 365 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1019400 | TF | AP2/ERF-ERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1019400 | Msa1098810 | 0.970635 | 6.439360e-132 | -8.615850e-47 |
| Msa0875130 | Msa1019400 | 0.820070 | 8.330488e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019400 | MtrunA17_Chr7g0235291 | 89.121 | 239 | 11 | 2 | 1 | 239 | 1 | 224 | 1.32e-129 | 365 |
| Msa1019400 | MtrunA17_Chr8g0339471 | 62.917 | 240 | 88 | 1 | 1 | 239 | 1 | 240 | 2.42e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019400 | AT4G13040.8 | 67.708 | 96 | 30 | 1 | 108 | 202 | 79 | 174 | 1.16e-38 | 133 |
| Msa1019400 | AT4G13040.4 | 67.708 | 96 | 30 | 1 | 108 | 202 | 79 | 174 | 1.16e-38 | 133 |
| Msa1019400 | AT4G13040.6 | 67.708 | 96 | 30 | 1 | 108 | 202 | 53 | 148 | 2.14e-38 | 132 |
| Msa1019400 | AT4G13040.2 | 67.708 | 96 | 30 | 1 | 108 | 202 | 53 | 148 | 2.14e-38 | 132 |
| Msa1019400 | AT4G13040.1 | 67.708 | 96 | 30 | 1 | 108 | 202 | 109 | 204 | 2.53e-38 | 133 |
| Msa1019400 | AT4G13040.3 | 67.708 | 96 | 30 | 1 | 108 | 202 | 129 | 224 | 5.75e-38 | 133 |
| Msa1019400 | AT4G13040.5 | 70.115 | 87 | 25 | 1 | 108 | 193 | 53 | 139 | 1.26e-37 | 129 |
| Msa1019400 | AT4G13040.7 | 70.115 | 87 | 25 | 1 | 108 | 193 | 109 | 195 | 3.48e-37 | 130 |
Find 72 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTTCATCAAATATTTC+TGG | 0.203815 | 7_1:-41035591 | Msa1019400:CDS |
| GTTGGACATTGTCAACTTTC+AGG | 0.212580 | 7_1:-41033915 | Msa1019400:three_prime_UTR |
| TCTTCTGGAAGATCGAAATT+TGG | 0.215964 | 7_1:+41034480 | None:intergenic |
| AAAAGAAAGAAGGGGTTTAT+AGG | 0.268622 | 7_1:+41038703 | None:intergenic |
| ATTCAAATGGGATGATTTCT+TGG | 0.268781 | 7_1:-41034436 | Msa1019400:CDS |
| CTAGTTTGGTAGATTTATTA+AGG | 0.317759 | 7_1:+41033883 | None:intergenic |
| AAATAAATGTTGCACTAGTT+TGG | 0.338998 | 7_1:+41033869 | None:intergenic |
| ATCATCATGCTTTGGTGATT+CGG | 0.340271 | 7_1:-41037272 | Msa1019400:five_prime_UTR |
| AGTTCTTGCTTCTCTTCTTC+TGG | 0.355294 | 7_1:+41034465 | None:intergenic |
| AACAGGTAAACGAGATTACT+TGG | 0.363807 | 7_1:+41037328 | None:intergenic |
| CTTAAGAAGGCGCAGGCTCT+TGG | 0.364636 | 7_1:-41037221 | Msa1019400:CDS |
| AAGCTAAGGGTACCTGAAAA+AGG | 0.378612 | 7_1:+41038628 | None:intergenic |
| GATCTTATTCCTACACTGTC+TGG | 0.388027 | 7_1:+41036976 | None:intergenic |
| GAAAATTAATCATCATGCTT+TGG | 0.388375 | 7_1:-41037280 | Msa1019400:five_prime_UTR |
| TGGTTGAATAAGCAGCTCTT+TGG | 0.393760 | 7_1:+41035557 | None:intergenic |
| AAGCATAGGCCGTTCACTCT+TGG | 0.399260 | 7_1:+41037017 | None:intergenic |
| AGCATAGGCCGTTCACTCTT+GGG | 0.403215 | 7_1:+41037018 | None:intergenic |
| CTATACTGTGAGAATCTAAC+TGG | 0.406180 | 7_1:-41037069 | Msa1019400:CDS |
| ATCCCTTGCACAAAGATGAT+TGG | 0.416704 | 7_1:-41034156 | Msa1019400:CDS |
| TTAAGAAGGCGCAGGCTCTT+GGG | 0.424765 | 7_1:-41037220 | Msa1019400:CDS |
| AAAGATTATTAATGCTATCA+AGG | 0.426305 | 7_1:+41033992 | None:intergenic |
| AAGAACTGCGCAAATTCAAA+TGG | 0.429554 | 7_1:-41034449 | Msa1019400:CDS |
| GTGGTATTATTGAATATTGA+TGG | 0.430926 | 7_1:+41038941 | None:intergenic |
| AAGAAGGGTGGTGGAATGGA+AGG | 0.433672 | 7_1:+41038918 | None:intergenic |
| TCCCTTGCACAAAGATGATT+GGG | 0.444367 | 7_1:-41034155 | Msa1019400:CDS |
| AGTCAACAAGCCATTGTTGT+TGG | 0.447476 | 7_1:+41038602 | None:intergenic |
| AATCTTAAGGAAAAGAAAGA+AGG | 0.449854 | 7_1:+41038693 | None:intergenic |
| TTAGGGCTGCTTTCATGTGT+GGG | 0.459553 | 7_1:-41034509 | Msa1019400:intron |
| CTGGTTCTGAAAATTTGTCT+TGG | 0.459968 | 7_1:-41037050 | Msa1019400:CDS |
| TTCTCACAGTATAGAGGAAG+AGG | 0.469498 | 7_1:+41037078 | None:intergenic |
| GGGGTTTATAGGAATATTGA+AGG | 0.470955 | 7_1:+41038714 | None:intergenic |
| TTTAGGGCTGCTTTCATGTG+TGG | 0.474978 | 7_1:-41034510 | Msa1019400:intron |
| ATTGTTGTTGGTAAAAGCTA+AGG | 0.478012 | 7_1:+41038614 | None:intergenic |
| GTTAGATTCTCACAGTATAG+AGG | 0.486663 | 7_1:+41037072 | None:intergenic |
| CTGCTTATTCAACCAACCCT+TGG | 0.488352 | 7_1:-41035549 | Msa1019400:intron |
| ATCTAAGTGAGAAAATCTTA+AGG | 0.492378 | 7_1:+41038680 | None:intergenic |
| ATCTTAAGGAAAAGAAAGAA+GGG | 0.506714 | 7_1:+41038694 | None:intergenic |
| CCAGAAATATTTGATGAACC+TGG | 0.508695 | 7_1:+41035591 | None:intergenic |
| TTCCCAATCATCTTTGTGCA+AGG | 0.511091 | 7_1:+41034153 | None:intergenic |
| AGGCTCTTGGGACTATGCTC+AGG | 0.512795 | 7_1:-41037208 | Msa1019400:intron |
| TCCCAATCATCTTTGTGCAA+GGG | 0.517342 | 7_1:+41034154 | None:intergenic |
| TAACAATGGTAAGCTTAAGA+AGG | 0.536513 | 7_1:-41037234 | Msa1019400:exon |
| ATCTTATTCCTACACTGTCT+GGG | 0.537378 | 7_1:+41036977 | None:intergenic |
| TAGAGGAAGAGGAGAGACAA+AGG | 0.539634 | 7_1:+41037089 | None:intergenic |
| AGAACTGCGCAAATTCAAAT+GGG | 0.547529 | 7_1:-41034448 | Msa1019400:CDS |
| AGTCAAGAAGTCAGCATGAG+AGG | 0.556795 | 7_1:-41034944 | Msa1019400:CDS |
| AAGCTGCTCACTTATATGAC+AGG | 0.561672 | 7_1:-41034835 | Msa1019400:intron |
| AGGGTGGTGGAATGGAAGGG+TGG | 0.566580 | 7_1:+41038922 | None:intergenic |
| AGAAGGGTGGTGGAATGGAA+GGG | 0.567468 | 7_1:+41038919 | None:intergenic |
| TCAAACGTAGGAAGCGACAT+AGG | 0.588875 | 7_1:-41034982 | Msa1019400:CDS |
| GATGATTGGGAAAGTATGCA+AGG | 0.596433 | 7_1:-41034142 | Msa1019400:CDS |
| TGGTAAGCTTAAGAAGGCGC+AGG | 0.598870 | 7_1:-41037228 | Msa1019400:CDS |
| ATAACACACAATACAAGAGG+AGG | 0.601063 | 7_1:-41038858 | Msa1019400:five_prime_UTR |
| ATGCTAAACCCAAGAGTGAA+CGG | 0.601380 | 7_1:-41037026 | Msa1019400:CDS |
| ACTGTTGTGCAAGAAGAACC+AGG | 0.605854 | 7_1:-41035609 | Msa1019400:CDS |
| AGGAATATTGAAGGAAGACA+AGG | 0.607502 | 7_1:+41038723 | None:intergenic |
| ATGAGATAATGTGTGTGTTG+TGG | 0.607518 | 7_1:+41038762 | None:intergenic |
| TTGTTGTTGGTAAAAGCTAA+GGG | 0.607961 | 7_1:+41038615 | None:intergenic |
| CTTGCGATCCAACAGTACCT+AGG | 0.608114 | 7_1:+41034861 | None:intergenic |
| AAAGAGTGTACATCTCAAGT+TGG | 0.610547 | 7_1:-41033933 | Msa1019400:three_prime_UTR |
| CTTGCATCATCTGAAAGCAT+AGG | 0.615914 | 7_1:+41037003 | None:intergenic |
| TCTTAAGGAAAAGAAAGAAG+GGG | 0.619203 | 7_1:+41038695 | None:intergenic |
| GAAAGTATGCAAGGAGTGAG+TGG | 0.620825 | 7_1:-41034133 | Msa1019400:CDS |
| TTAATAACACACAATACAAG+AGG | 0.621501 | 7_1:-41038861 | Msa1019400:five_prime_UTR |
| AATATTGAAGGAAGACAAGG+TGG | 0.633313 | 7_1:+41038726 | None:intergenic |
| GTAAACAACTAACCAAGGGT+TGG | 0.634157 | 7_1:+41035537 | None:intergenic |
| GCAAGCATCCCAGACAGTGT+AGG | 0.639402 | 7_1:-41036985 | Msa1019400:CDS |
| TAACACACAATACAAGAGGA+GGG | 0.656690 | 7_1:-41038857 | Msa1019400:five_prime_UTR |
| TAATTAATGGATCTAGCATG+AGG | 0.667121 | 7_1:+41034044 | None:intergenic |
| TTAATGGATCTAGCATGAGG+TGG | 0.688743 | 7_1:+41034047 | None:intergenic |
| CAGGACCTGCTGTCAAACGT+AGG | 0.692659 | 7_1:-41034994 | Msa1019400:CDS |
| GACAAGAAACAGATTCACCT+AGG | 0.711667 | 7_1:-41034878 | Msa1019400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATCTTTTTTTCAT+TGG | - | chr7_1:41035983-41036002 | Msa1019400:intron | 10.0% |
| !! | TAAATCAAAAACTATTTATT+TGG | + | chr7_1:41037365-41037384 | None:intergenic | 10.0% |
| !!! | AAATAAATAGTTTTTGATTT+AGG | - | chr7_1:41037364-41037383 | Msa1019400:intron | 10.0% |
| !! | TATCTAATTATAATATAAAG+TGG | + | chr7_1:41037591-41037610 | None:intergenic | 10.0% |
| !!! | ATTTTCTACAATATAATTAA+TGG | + | chr7_1:41038789-41038808 | None:intergenic | 10.0% |
| !!! | TTAAACTTTTCATATTTCAT+AGG | - | chr7_1:41037662-41037681 | Msa1019400:intron | 15.0% |
| !! | GAAGAAAATAAGAAAAAGAA+GGG | + | chr7_1:41033917-41033936 | None:intergenic | 20.0% |
| !! | AGAAGAAAATAAGAAAAAGA+AGG | + | chr7_1:41033918-41033937 | None:intergenic | 20.0% |
| !! | AAAACAAAAACAGAAACAAA+AGG | - | chr7_1:41034017-41034036 | Msa1019400:three_prime_UTR | 20.0% |
| !!! | AAATCTTTTGAGAAAAAAGA+TGG | + | chr7_1:41034664-41034683 | None:intergenic | 20.0% |
| !!! | ATAAAACTAATTTGCAAAGA+AGG | + | chr7_1:41034693-41034712 | None:intergenic | 20.0% |
| !!! | TATCATGTTTCAGTTTTAAA+AGG | - | chr7_1:41034710-41034729 | Msa1019400:intron | 20.0% |
| !!! | ATCATGTTTCAGTTTTAAAA+GGG | - | chr7_1:41034711-41034730 | Msa1019400:intron | 20.0% |
| !! | GATTTGAATTATGTTTACAA+AGG | - | chr7_1:41034773-41034792 | Msa1019400:intron | 20.0% |
| !!! | AATGGTTTTTTCCTAATTAT+AGG | + | chr7_1:41035025-41035044 | None:intergenic | 20.0% |
| !! | AAAGGCAAAAAAAAAATGAT+TGG | + | chr7_1:41035695-41035714 | None:intergenic | 20.0% |
| !! | CTTTAAACAGATTTATCAAT+AGG | + | chr7_1:41035927-41035946 | None:intergenic | 20.0% |
| !!! | ATTGAACATTTTGAAATGAA+TGG | + | chr7_1:41036366-41036385 | None:intergenic | 20.0% |
| !!! | AGATGAAAAATATTTTGAAG+AGG | - | chr7_1:41036657-41036676 | Msa1019400:intron | 20.0% |
| !!! | CTGATAAAATATAGCTTTTT+TGG | + | chr7_1:41036891-41036910 | None:intergenic | 20.0% |
| !!! | TCATTCTAGTTTTTAAAAGA+CGG | + | chr7_1:41036914-41036933 | None:intergenic | 20.0% |
| !! | AATCAGAATAAATGTTTACA+AGG | - | chr7_1:41037079-41037098 | Msa1019400:CDS | 20.0% |
| !! | GAAAAAACATTCATACATTA+GGG | + | chr7_1:41037551-41037570 | None:intergenic | 20.0% |
| !!! | CTTATTTAAGTATGTTTTAC+TGG | - | chr7_1:41037700-41037719 | Msa1019400:intron | 20.0% |
| !! | GCTAACAAAATAAAATATCT+TGG | - | chr7_1:41038222-41038241 | Msa1019400:intron | 20.0% |
| !!! | AAAAACATCTCTTTTTCTTT+AGG | - | chr7_1:41038290-41038309 | Msa1019400:intron | 20.0% |
| !!! | AAAACATCTCTTTTTCTTTA+GGG | - | chr7_1:41038291-41038310 | Msa1019400:intron | 20.0% |
| !! | TATAATTGAATACATGTGTA+TGG | - | chr7_1:41038523-41038542 | Msa1019400:intron | 20.0% |
| !! | AAAGATTATTAATGCTATCA+AGG | + | chr7_1:41038828-41038847 | None:intergenic | 20.0% |
| ! | GTGGTATTATTGAATATTGA+TGG | + | chr7_1:41033879-41033898 | None:intergenic | 25.0% |
| ! | TTAATAACACACAATACAAG+AGG | - | chr7_1:41033956-41033975 | Msa1019400:three_prime_UTR | 25.0% |
| ! | ATCTTAAGGAAAAGAAAGAA+GGG | + | chr7_1:41034126-41034145 | None:intergenic | 25.0% |
| ! | AATCTTAAGGAAAAGAAAGA+AGG | + | chr7_1:41034127-41034146 | None:intergenic | 25.0% |
| ! | ATCTAAGTGAGAAAATCTTA+AGG | + | chr7_1:41034140-41034159 | None:intergenic | 25.0% |
| ! | AAAAGACACAAAAAAACGTA+CGG | + | chr7_1:41034255-41034274 | None:intergenic | 25.0% |
| ! | AAGGAAACTAAATGAAAGAA+AGG | + | chr7_1:41034287-41034306 | None:intergenic | 25.0% |
| ! | TTTCTATAGTTTCCTTGAAT+GGG | - | chr7_1:41034423-41034442 | Msa1019400:CDS | 25.0% |
| !!! | GCTTTTTGCTATGATAAAAT+TGG | - | chr7_1:41034744-41034763 | Msa1019400:intron | 25.0% |
| !! | GTTTACAAAGGTTTATTTCT+AGG | - | chr7_1:41034785-41034804 | Msa1019400:intron | 25.0% |
| ! | TTTGTATCTGTACTTGTTTA+TGG | - | chr7_1:41034850-41034869 | Msa1019400:CDS | 25.0% |
| ! | AGTTATACTACAAAAAGCAA+TGG | + | chr7_1:41035043-41035062 | None:intergenic | 25.0% |
| ! | AAAGGCAAAATGTATCTTTA+GGG | + | chr7_1:41035084-41035103 | None:intergenic | 25.0% |
| ! | TAAAGGCAAAATGTATCTTT+AGG | + | chr7_1:41035085-41035104 | None:intergenic | 25.0% |
| !! | TATTTTCGCAAGTTATCTTT+GGG | - | chr7_1:41035229-41035248 | Msa1019400:intron | 25.0% |
| ! | AATAAGTCGAAAACAGTTTA+TGG | - | chr7_1:41035261-41035280 | Msa1019400:intron | 25.0% |
| ! | AGCATATTTACAGCTTATTT+GGG | + | chr7_1:41035363-41035382 | None:intergenic | 25.0% |
| !!! | CCTGTTTTAAAGGAAAAAAA+CGG | - | chr7_1:41035506-41035525 | Msa1019400:intron | 25.0% |
| ! | GAAAATTAATCATCATGCTT+TGG | - | chr7_1:41035537-41035556 | Msa1019400:intron | 25.0% |
| ! | AAAAAGACTGAAACTAACAA+TGG | - | chr7_1:41035569-41035588 | Msa1019400:CDS | 25.0% |
| !! | AATGTCTTAGAATTTAGGTT+AGG | + | chr7_1:41036291-41036310 | None:intergenic | 25.0% |
| !!! | TCTTCTTTTCTCTAAGATTT+TGG | - | chr7_1:41036540-41036559 | Msa1019400:intron | 25.0% |
| !!! | TAAGATTTTGGCTAGTTATT+TGG | - | chr7_1:41036552-41036571 | Msa1019400:intron | 25.0% |
| !! | TTGAAGAGGAAGTTTAAAAT+TGG | - | chr7_1:41036671-41036690 | Msa1019400:intron | 25.0% |
| !!! | TTTTTGATTTAGGATCTGTT+TGG | - | chr7_1:41037374-41037393 | Msa1019400:intron | 25.0% |
| !! | TTAGATTGATTCACTAAAGA+GGG | - | chr7_1:41037462-41037481 | Msa1019400:intron | 25.0% |
| ! | GGAAAAAACATTCATACATT+AGG | + | chr7_1:41037552-41037571 | None:intergenic | 25.0% |
| ! | CATACTTAAATAAGCTTAGT+TGG | + | chr7_1:41037694-41037713 | None:intergenic | 25.0% |
| ! | AAAGCTAATAGAGAATTTGA+TGG | + | chr7_1:41037756-41037775 | None:intergenic | 25.0% |
| ! | TGTACTTCAAAAATATGAAG+TGG | - | chr7_1:41037898-41037917 | Msa1019400:intron | 25.0% |
| ! | TAACAACATTATAGAACTCA+AGG | + | chr7_1:41038013-41038032 | None:intergenic | 25.0% |
| !! | TTTTCATACTAAGTAGATCA+TGG | + | chr7_1:41038274-41038293 | None:intergenic | 25.0% |
| ! | TAAAACAAGTAATATCTAGC+AGG | + | chr7_1:41038559-41038578 | None:intergenic | 25.0% |
| ! | CTAGTTTGGTAGATTTATTA+AGG | + | chr7_1:41038937-41038956 | None:intergenic | 25.0% |
| ! | AAATAAATGTTGCACTAGTT+TGG | + | chr7_1:41038951-41038970 | None:intergenic | 25.0% |
| !!! | ATTTATTTTCTTCTGTGCAA+TGG | - | chr7_1:41038963-41038982 | Msa1019400:five_prime_UTR | 25.0% |
| GAAAATAAGAAAAAGAAGGG+TGG | + | chr7_1:41033914-41033933 | None:intergenic | 30.0% | |
| ACAAAAACAGAAACAAAAGG+TGG | - | chr7_1:41034020-41034039 | Msa1019400:three_prime_UTR | 30.0% | |
| AAAAGAAAGAAGGGGTTTAT+AGG | + | chr7_1:41034117-41034136 | None:intergenic | 30.0% | |
| TCTTAAGGAAAAGAAAGAAG+GGG | + | chr7_1:41034125-41034144 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGGTAAAAGCTAA+GGG | + | chr7_1:41034205-41034224 | None:intergenic | 30.0% |
| ! | ATTGTTGTTGGTAAAAGCTA+AGG | + | chr7_1:41034206-41034225 | None:intergenic | 30.0% |
| !! | TTAGCTTTTACCAACAACAA+TGG | - | chr7_1:41034205-41034224 | Msa1019400:CDS | 30.0% |
| ACAAAAAAACGTACGGAAAT+GGG | + | chr7_1:41034248-41034267 | None:intergenic | 30.0% | |
| GACACGACAACATATAAAAA+AGG | + | chr7_1:41034306-41034325 | None:intergenic | 30.0% | |
| CTTTCTATAGTTTCCTTGAA+TGG | - | chr7_1:41034422-41034441 | Msa1019400:CDS | 30.0% | |
| ATTCAAAAAACACCCATTCA+AGG | + | chr7_1:41034438-41034457 | None:intergenic | 30.0% | |
| !!! | ATTTTGGTTTGTGATTTGTG+TGG | - | chr7_1:41034480-41034499 | Msa1019400:CDS | 30.0% |
| AACCAAAAGGAGAAATACTT+TGG | - | chr7_1:41034572-41034591 | Msa1019400:intron | 30.0% | |
| !! | AACCAAAGTATTTCTCCTTT+TGG | + | chr7_1:41034577-41034596 | None:intergenic | 30.0% |
| TTGCTCAATGAAACATTGAA+TGG | + | chr7_1:41034632-41034651 | None:intergenic | 30.0% | |
| AATGTTTCATTGAGCAAACT+AGG | - | chr7_1:41034635-41034654 | Msa1019400:intron | 30.0% | |
| AACAAGTACAGATACAAATG+CGG | + | chr7_1:41034848-41034867 | None:intergenic | 30.0% | |
| !! | TTTATGGATGATTTTGACCA+AGG | - | chr7_1:41034866-41034885 | Msa1019400:CDS | 30.0% |
| ! | GATGATTTTCTACCTATTTC+TGG | - | chr7_1:41034998-41035017 | Msa1019400:intron | 30.0% |
| CTAATTATAGGACCAGAAAT+AGG | + | chr7_1:41035013-41035032 | None:intergenic | 30.0% | |
| !! | CTATTTCTGGTCCTATAATT+AGG | - | chr7_1:41035011-41035030 | Msa1019400:intron | 30.0% |
| ! | CATTTTGCCTTTACTAATTG+TGG | - | chr7_1:41035092-41035111 | Msa1019400:intron | 30.0% |
| AAACACACCACAATTAGTAA+AGG | + | chr7_1:41035102-41035121 | None:intergenic | 30.0% | |
| TTTACTAATTGTGGTGTGTT+TGG | - | chr7_1:41035101-41035120 | Msa1019400:intron | 30.0% | |
| ! | CTATTTTCGCAAGTTATCTT+TGG | - | chr7_1:41035228-41035247 | Msa1019400:intron | 30.0% |
| GAGCATATTTACAGCTTATT+TGG | + | chr7_1:41035364-41035383 | None:intergenic | 30.0% | |
| ! | GGTTGCATATTGTTTTCTTT+TGG | - | chr7_1:41035400-41035419 | Msa1019400:intron | 30.0% |
| TTGGAATTTACAGCATTGTT+TGG | - | chr7_1:41035419-41035438 | Msa1019400:intron | 30.0% | |
| !! | ATCTCGTTTACCTGTTTTAA+AGG | - | chr7_1:41035496-41035515 | Msa1019400:intron | 30.0% |
| !!! | CCGTTTTTTTCCTTTAAAAC+AGG | + | chr7_1:41035509-41035528 | None:intergenic | 30.0% |
| TTAAAGGAAAAAAACGGCTA+TGG | - | chr7_1:41035512-41035531 | Msa1019400:intron | 30.0% | |
| TAACAATGGTAAGCTTAAGA+AGG | - | chr7_1:41035583-41035602 | Msa1019400:CDS | 30.0% | |
| ! | GATACAAAAGCATGATGAAT+AGG | + | chr7_1:41035649-41035668 | None:intergenic | 30.0% |
| !!! | CATTTTTTTTTTGCCTTTGC+AGG | - | chr7_1:41035697-41035716 | Msa1019400:intron | 30.0% |
| AATAAAAGTCCTCGTTGAAA+TGG | + | chr7_1:41035968-41035987 | None:intergenic | 30.0% | |
| ! | CTGAAAAATGAGTTTAGAAC+CGG | - | chr7_1:41036042-41036061 | Msa1019400:intron | 30.0% |
| ! | TGAAAAATGAGTTTAGAACC+GGG | - | chr7_1:41036043-41036062 | Msa1019400:intron | 30.0% |
| GAAGCAATGTCTTAGAATTT+AGG | + | chr7_1:41036296-41036315 | None:intergenic | 30.0% | |
| TCTGATTCAATTGAAAGATC+AGG | - | chr7_1:41036314-41036333 | Msa1019400:intron | 30.0% | |
| AAAGAAGAATTATCCAACCA+TGG | + | chr7_1:41036528-41036547 | None:intergenic | 30.0% | |
| TGATACTCAGTAATCATCAT+TGG | - | chr7_1:41036585-41036604 | Msa1019400:intron | 30.0% | |
| TTCGGCATTCTAATAGTAAA+AGG | - | chr7_1:41036632-41036651 | Msa1019400:intron | 30.0% | |
| TCAATGCATTATCTTTCATC+CGG | - | chr7_1:41036730-41036749 | Msa1019400:intron | 30.0% | |
| ! | CATGGTTCAATTGGTTTAAT+CGG | + | chr7_1:41036772-41036791 | None:intergenic | 30.0% |
| CATAGTAAACAACTAACCAA+GGG | + | chr7_1:41037287-41037306 | None:intergenic | 30.0% | |
| ACATAGTAAACAACTAACCA+AGG | + | chr7_1:41037288-41037307 | None:intergenic | 30.0% | |
| ! | TGTTTGGAACAATTAGTGAT+TGG | - | chr7_1:41037390-41037409 | Msa1019400:intron | 30.0% |
| ! | GTTAGATTGATTCACTAAAG+AGG | - | chr7_1:41037461-41037480 | Msa1019400:intron | 30.0% |
| ! | TAGATTGATTCACTAAAGAG+GGG | - | chr7_1:41037463-41037482 | Msa1019400:intron | 30.0% |
| TAGATATCTTGAAACTGTTG+CGG | - | chr7_1:41037605-41037624 | Msa1019400:intron | 30.0% | |
| CTTAACTTCGTTGATATCAT+TGG | - | chr7_1:41037630-41037649 | Msa1019400:intron | 30.0% | |
| TGCTAAATGCAATGTAAAGT+AGG | + | chr7_1:41037805-41037824 | None:intergenic | 30.0% | |
| TACTTTACATTGCATTTAGC+AGG | - | chr7_1:41037804-41037823 | Msa1019400:intron | 30.0% | |
| TGTACTAAGATGAAGGTTTA+GGG | - | chr7_1:41038149-41038168 | Msa1019400:intron | 30.0% | |
| ATTCAAATGGGATGATTTCT+TGG | - | chr7_1:41038381-41038400 | Msa1019400:intron | 30.0% | |
| !! | CAAGATTATTTTGCAGTTCT+GGG | + | chr7_1:41038635-41038654 | None:intergenic | 30.0% |
| !! | TCAAGATTATTTTGCAGTTC+TGG | + | chr7_1:41038636-41038655 | None:intergenic | 30.0% |
| ! | TAATTAATGGATCTAGCATG+AGG | + | chr7_1:41038776-41038795 | None:intergenic | 30.0% |
| AATAAGAAAAAGAAGGGTGG+TGG | + | chr7_1:41033911-41033930 | None:intergenic | 35.0% | |
| ATAACACACAATACAAGAGG+AGG | - | chr7_1:41033959-41033978 | Msa1019400:three_prime_UTR | 35.0% | |
| TAACACACAATACAAGAGGA+GGG | - | chr7_1:41033960-41033979 | Msa1019400:three_prime_UTR | 35.0% | |
| ATGAGATAATGTGTGTGTTG+TGG | + | chr7_1:41034058-41034077 | None:intergenic | 35.0% | |
| AATATTGAAGGAAGACAAGG+TGG | + | chr7_1:41034094-41034113 | None:intergenic | 35.0% | |
| AGGAATATTGAAGGAAGACA+AGG | + | chr7_1:41034097-41034116 | None:intergenic | 35.0% | |
| GGGGTTTATAGGAATATTGA+AGG | + | chr7_1:41034106-41034125 | None:intergenic | 35.0% | |
| ! | TTGTCACCTTATCCTTTTTC+AGG | - | chr7_1:41034177-41034196 | Msa1019400:CDS | 35.0% |
| CACAAAAAAACGTACGGAAA+TGG | + | chr7_1:41034249-41034268 | None:intergenic | 35.0% | |
| GTTGACTGATGATAAAGTCT+TGG | - | chr7_1:41034398-41034417 | Msa1019400:intron | 35.0% | |
| ! | GTGAATGTGTGTGTGTATTT+TGG | - | chr7_1:41034464-41034483 | Msa1019400:CDS | 35.0% |
| ! | TGTGATTTGTGTGGTCAAAA+TGG | - | chr7_1:41034489-41034508 | Msa1019400:CDS | 35.0% |
| ! | GTGATTTGTGTGGTCAAAAT+GGG | - | chr7_1:41034490-41034509 | Msa1019400:CDS | 35.0% |
| ! | TTACTACCCTTTTCCAAGAA+AGG | - | chr7_1:41034526-41034545 | Msa1019400:intron | 35.0% |
| ! | ATGGAGTTGACTTAACCAAA+AGG | - | chr7_1:41034559-41034578 | Msa1019400:intron | 35.0% |
| TTGATGCTTAAAAACCACCT+TGG | + | chr7_1:41034886-41034905 | None:intergenic | 35.0% | |
| TTTAAGCATCAAGTCAAAGC+AGG | - | chr7_1:41034894-41034913 | Msa1019400:CDS | 35.0% | |
| AGTTGAACTACATTCTCTCT+TGG | + | chr7_1:41035187-41035206 | None:intergenic | 35.0% | |
| GCTTATTTGGGCTTATCTTA+TGG | + | chr7_1:41035351-41035370 | None:intergenic | 35.0% | |
| !! | GAAACTTTTTCTTCCCCTAT+AGG | - | chr7_1:41035465-41035484 | Msa1019400:intron | 35.0% |
| AACAGGTAAACGAGATTACT+TGG | + | chr7_1:41035492-41035511 | None:intergenic | 35.0% | |
| ! | ATCATCATGCTTTGGTGATT+CGG | - | chr7_1:41035545-41035564 | Msa1019400:intron | 35.0% |
| GTTAGATTCTCACAGTATAG+AGG | + | chr7_1:41035748-41035767 | None:intergenic | 35.0% | |
| CTATACTGTGAGAATCTAAC+TGG | - | chr7_1:41035748-41035767 | Msa1019400:intron | 35.0% | |
| !! | CTGGTTCTGAAAATTTGTCT+TGG | - | chr7_1:41035767-41035786 | Msa1019400:intron | 35.0% |
| ATCTTATTCCTACACTGTCT+GGG | + | chr7_1:41035843-41035862 | None:intergenic | 35.0% | |
| ! | GTCTCACATTTGATGACATA+TGG | - | chr7_1:41036018-41036037 | Msa1019400:intron | 35.0% |
| CCTTACAAAACCAACTTGAA+AGG | + | chr7_1:41036081-41036100 | None:intergenic | 35.0% | |
| !!! | CCTTTCAAGTTGGTTTTGTA+AGG | - | chr7_1:41036078-41036097 | Msa1019400:intron | 35.0% |
| ! | TATCTAAAGCGTAACTTGAG+TGG | + | chr7_1:41036146-41036165 | None:intergenic | 35.0% |
| GATCATATCTCATCAAGTGA+GGG | + | chr7_1:41036201-41036220 | None:intergenic | 35.0% | |
| AGATCATATCTCATCAAGTG+AGG | + | chr7_1:41036202-41036221 | None:intergenic | 35.0% | |
| CTGAAAACGAGTTTGTAAGT+TGG | - | chr7_1:41036220-41036239 | Msa1019400:intron | 35.0% | |
| CTAACTCAACCCTACAAAAT+CGG | + | chr7_1:41036267-41036286 | None:intergenic | 35.0% | |
| ! | TTTTGCTTGTCTTCTTCAAC+TGG | - | chr7_1:41036706-41036725 | Msa1019400:intron | 35.0% |
| TAAACCAATTGAACCATGAC+CGG | - | chr7_1:41036774-41036793 | Msa1019400:intron | 35.0% | |
| !!! | CTTTTTTGGTATTGCTTCGT+CGG | + | chr7_1:41036877-41036896 | None:intergenic | 35.0% |
| AGTTGTAAATCAAAGCAGTG+AGG | + | chr7_1:41036943-41036962 | None:intergenic | 35.0% | |
| ATCAATATATCAATCCCACC+CGG | + | chr7_1:41036991-41037010 | None:intergenic | 35.0% | |
| ATTCTGATTCTGATCACATC+TGG | + | chr7_1:41037068-41037087 | None:intergenic | 35.0% | |
| AATGTATGAAGTTATGCCCT+TGG | - | chr7_1:41037108-41037127 | Msa1019400:intron | 35.0% | |
| AAATAATAGATCGACGCCAA+GGG | + | chr7_1:41037127-41037146 | None:intergenic | 35.0% | |
| TAAATAATAGATCGACGCCA+AGG | + | chr7_1:41037128-41037147 | None:intergenic | 35.0% | |
| CCAGAAATATTTGATGAACC+TGG | + | chr7_1:41037229-41037248 | None:intergenic | 35.0% | |
| CCAGGTTCATCAAATATTTC+TGG | - | chr7_1:41037226-41037245 | Msa1019400:CDS | 35.0% | |
| CATACATAACACTGCAAATG+AGG | + | chr7_1:41037315-41037334 | None:intergenic | 35.0% | |
| CTCATTTGCAGTGTTATGTA+TGG | - | chr7_1:41037313-41037332 | Msa1019400:five_prime_UTR | 35.0% | |
| ATTATCAAAAGCGAAGCTGT+TGG | + | chr7_1:41038036-41038055 | None:intergenic | 35.0% | |
| !! | AGCTTCGCTTTTGATAATCA+CGG | - | chr7_1:41038038-41038057 | Msa1019400:intron | 35.0% |
| GTAGGTAACTTGACATTGAA+AGG | + | chr7_1:41038078-41038097 | None:intergenic | 35.0% | |
| GTGTACTAAGATGAAGGTTT+AGG | - | chr7_1:41038148-41038167 | Msa1019400:intron | 35.0% | |
| ! | TCTTCTGGAAGATCGAAATT+TGG | + | chr7_1:41038340-41038359 | None:intergenic | 35.0% |
| AAGAACTGCGCAAATTCAAA+TGG | - | chr7_1:41038368-41038387 | Msa1019400:intron | 35.0% | |
| AGAACTGCGCAAATTCAAAT+GGG | - | chr7_1:41038369-41038388 | Msa1019400:intron | 35.0% | |
| ! | TCTATCGAAGAAAGCATATG+TGG | + | chr7_1:41038460-41038479 | None:intergenic | 35.0% |
| !! | AGACGCAAGTGTTTTATTGT+CGG | + | chr7_1:41038499-41038518 | None:intergenic | 35.0% |
| ! | AAAGAGTGTACATCTCAAGT+TGG | - | chr7_1:41038884-41038903 | Msa1019400:five_prime_UTR | 35.0% |
| ! | AGGGTACCTGAAAAAGGATA+AGG | + | chr7_1:41034186-41034205 | None:intergenic | 40.0% |
| !! | AAGCTAAGGGTACCTGAAAA+AGG | + | chr7_1:41034192-41034211 | None:intergenic | 40.0% |
| AGTCAACAAGCCATTGTTGT+TGG | + | chr7_1:41034218-41034237 | None:intergenic | 40.0% | |
| CTACCACCTTTCTTGGAAAA+GGG | + | chr7_1:41034535-41034554 | None:intergenic | 40.0% | |
| !! | ATGGATGATTTTGACCAAGG+TGG | - | chr7_1:41034869-41034888 | Msa1019400:CDS | 40.0% |
| GAGATTACTTGGACCTATAG+GGG | + | chr7_1:41035481-41035500 | None:intergenic | 40.0% | |
| CGAGATTACTTGGACCTATA+GGG | + | chr7_1:41035482-41035501 | None:intergenic | 40.0% | |
| ACGAGATTACTTGGACCTAT+AGG | + | chr7_1:41035483-41035502 | None:intergenic | 40.0% | |
| TTCTCACAGTATAGAGGAAG+AGG | + | chr7_1:41035742-41035761 | None:intergenic | 40.0% | |
| ATGCTAAACCCAAGAGTGAA+CGG | - | chr7_1:41035791-41035810 | Msa1019400:intron | 40.0% | |
| ! | CTTGCATCATCTGAAAGCAT+AGG | + | chr7_1:41035817-41035836 | None:intergenic | 40.0% |
| GATCTTATTCCTACACTGTC+TGG | + | chr7_1:41035844-41035863 | None:intergenic | 40.0% | |
| CTTCACTTTCCATTTCAACG+AGG | - | chr7_1:41035956-41035975 | Msa1019400:intron | 40.0% | |
| ! | AAAATGAGTTTAGAACCGGG+AGG | - | chr7_1:41036046-41036065 | Msa1019400:intron | 40.0% |
| AAAACCAACTTGAAAGGCGA+GGG | + | chr7_1:41036075-41036094 | None:intergenic | 40.0% | |
| AGTAGCAATCCAAGATTCGT+CGG | - | chr7_1:41036104-41036123 | Msa1019400:intron | 40.0% | |
| !! | ATCTTAGAGGCCGATTTTGT+AGG | - | chr7_1:41036254-41036273 | Msa1019400:intron | 40.0% |
| !! | TCTTAGAGGCCGATTTTGTA+GGG | - | chr7_1:41036255-41036274 | Msa1019400:intron | 40.0% |
| ! | CGATTTTGTAGGGTTGAGTT+AGG | - | chr7_1:41036265-41036284 | Msa1019400:intron | 40.0% |
| TTACTATCGCCTCTTCAGAA+TGG | - | chr7_1:41036487-41036506 | Msa1019400:intron | 40.0% | |
| ! | TGAGCATATCCATTCTGAAG+AGG | + | chr7_1:41036499-41036518 | None:intergenic | 40.0% |
| ! | TGGTTTAATCGGTTCAACCA+TGG | + | chr7_1:41036761-41036780 | None:intergenic | 40.0% |
| AACCAGACTGAAAACTGAAC+TGG | + | chr7_1:41036809-41036828 | None:intergenic | 40.0% | |
| ! | ACAATGAAGCCTTATCACAC+CGG | - | chr7_1:41036969-41036988 | Msa1019400:CDS | 40.0% |
| CTTCTTGCACAACAGTATTC+TGG | + | chr7_1:41037204-41037223 | None:intergenic | 40.0% | |
| TGGTTGAATAAGCAGCTCTT+TGG | + | chr7_1:41037263-41037282 | None:intergenic | 40.0% | |
| GTAAACAACTAACCAAGGGT+TGG | + | chr7_1:41037283-41037302 | None:intergenic | 40.0% | |
| AGTGGACAAGCTGTATCAAA+AGG | + | chr7_1:41037573-41037592 | None:intergenic | 40.0% | |
| GACAAGAAACAGATTCACCT+AGG | - | chr7_1:41037939-41037958 | Msa1019400:intron | 40.0% | |
| AAGCTGCTCACTTATATGAC+AGG | - | chr7_1:41037982-41038001 | Msa1019400:intron | 40.0% | |
| ATACCACTGAGTTCAATCGT+CGG | + | chr7_1:41038109-41038128 | None:intergenic | 40.0% | |
| TTGAACTCAGTGGTATGAGT+TGG | - | chr7_1:41038113-41038132 | Msa1019400:intron | 40.0% | |
| TGAACTCAGTGGTATGAGTT+GGG | - | chr7_1:41038114-41038133 | Msa1019400:intron | 40.0% | |
| GAAGTGGTGTACTAAGATGA+AGG | - | chr7_1:41038142-41038161 | Msa1019400:intron | 40.0% | |
| AGTTCTTGCTTCTCTTCTTC+TGG | + | chr7_1:41038355-41038374 | None:intergenic | 40.0% | |
| ATCCCTTGCACAAAGATGAT+TGG | - | chr7_1:41038661-41038680 | Msa1019400:five_prime_UTR | 40.0% | |
| TCCCTTGCACAAAGATGATT+GGG | - | chr7_1:41038662-41038681 | Msa1019400:five_prime_UTR | 40.0% | |
| TCCCAATCATCTTTGTGCAA+GGG | + | chr7_1:41038666-41038685 | None:intergenic | 40.0% | |
| TTCCCAATCATCTTTGTGCA+AGG | + | chr7_1:41038667-41038686 | None:intergenic | 40.0% | |
| ! | GATGATTGGGAAAGTATGCA+AGG | - | chr7_1:41038675-41038694 | Msa1019400:five_prime_UTR | 40.0% |
| ! | TTAATGGATCTAGCATGAGG+TGG | + | chr7_1:41038773-41038792 | None:intergenic | 40.0% |
| GTTGGACATTGTCAACTTTC+AGG | - | chr7_1:41038902-41038921 | Msa1019400:five_prime_UTR | 40.0% | |
| !! | GAAAAAGAAGGGTGGTGGAA+TGG | + | chr7_1:41033906-41033925 | None:intergenic | 45.0% |
| ACACTGATGAGCTGCAGAAT+CGG | - | chr7_1:41034366-41034385 | Msa1019400:intron | 45.0% | |
| ! | CTACCCTTTTCCAAGAAAGG+TGG | - | chr7_1:41034529-41034548 | Msa1019400:intron | 45.0% |
| CCTACCACCTTTCTTGGAAA+AGG | + | chr7_1:41034536-41034555 | None:intergenic | 45.0% | |
| ! | CCTTTTCCAAGAAAGGTGGT+AGG | - | chr7_1:41034533-41034552 | Msa1019400:intron | 45.0% |
| CATCAACCTACCACCTTTCT+TGG | + | chr7_1:41034542-41034561 | None:intergenic | 45.0% | |
| ! | CAAGAAAGGTGGTAGGTTGA+TGG | - | chr7_1:41034540-41034559 | Msa1019400:intron | 45.0% |
| TGCTCTTTCAAACGCACGTT+TGG | - | chr7_1:41035379-41035398 | Msa1019400:intron | 45.0% | |
| AAAGGAACTGCTTCCTGCAA+AGG | + | chr7_1:41035713-41035732 | None:intergenic | 45.0% | |
| TAGAGGAAGAGGAGAGACAA+AGG | + | chr7_1:41035731-41035750 | None:intergenic | 45.0% | |
| CAAAACCAACTTGAAAGGCG+AGG | + | chr7_1:41036076-41036095 | None:intergenic | 45.0% | |
| AACTTGAGTGGTCCGATAGT+GGG | + | chr7_1:41036134-41036153 | None:intergenic | 45.0% | |
| TAACTTGAGTGGTCCGATAG+TGG | + | chr7_1:41036135-41036154 | None:intergenic | 45.0% | |
| CTTAACACGCTCTTGTGTCT+AGG | + | chr7_1:41036175-41036194 | None:intergenic | 45.0% | |
| GGATGCATCACTGATCTTAG+AGG | - | chr7_1:41036241-41036260 | Msa1019400:intron | 45.0% | |
| TCTTTCATCCGGTTCAACCA+TGG | - | chr7_1:41036741-41036760 | Msa1019400:intron | 45.0% | |
| ! | CACCAGTTCAGTTTTCAGTC+TGG | - | chr7_1:41036804-41036823 | Msa1019400:intron | 45.0% |
| GTATTGCTTCGTCGGTAACA+AGG | + | chr7_1:41036869-41036888 | None:intergenic | 45.0% | |
| GTGATAAGGCTTCATTGTGG+TGG | + | chr7_1:41036967-41036986 | None:intergenic | 45.0% | |
| GGTGTGATAAGGCTTCATTG+TGG | + | chr7_1:41036970-41036989 | None:intergenic | 45.0% | |
| ! | CAATGAAGCCTTATCACACC+GGG | - | chr7_1:41036970-41036989 | Msa1019400:CDS | 45.0% |
| ACTGTTGTGCAAGAAGAACC+AGG | - | chr7_1:41037208-41037227 | Msa1019400:intron | 45.0% | |
| CTGCTTATTCAACCAACCCT+TGG | - | chr7_1:41037268-41037287 | Msa1019400:five_prime_UTR | 45.0% | |
| TCAAACGTAGGAAGCGACAT+AGG | - | chr7_1:41037835-41037854 | Msa1019400:intron | 45.0% | |
| AGTCAAGAAGTCAGCATGAG+AGG | - | chr7_1:41037873-41037892 | Msa1019400:intron | 45.0% | |
| ! | CAGATTCACCTAGGTACTGT+TGG | - | chr7_1:41037948-41037967 | Msa1019400:intron | 45.0% |
| TACCACTGAGTTCAATCGTC+GGG | + | chr7_1:41038108-41038127 | None:intergenic | 45.0% | |
| ! | TATGAGTTGGGACACTGAAG+TGG | - | chr7_1:41038126-41038145 | Msa1019400:intron | 45.0% |
| ! | TTTAGGGCTGCTTTCATGTG+TGG | - | chr7_1:41038307-41038326 | Msa1019400:intron | 45.0% |
| ! | TTAGGGCTGCTTTCATGTGT+GGG | - | chr7_1:41038308-41038327 | Msa1019400:intron | 45.0% |
| ! | GAAAGTATGCAAGGAGTGAG+TGG | - | chr7_1:41038684-41038703 | Msa1019400:five_prime_UTR | 45.0% |
| !! | AGAAGGGTGGTGGAATGGAA+GGG | + | chr7_1:41033901-41033920 | None:intergenic | 50.0% |
| !! | AAGAAGGGTGGTGGAATGGA+AGG | + | chr7_1:41033902-41033921 | None:intergenic | 50.0% |
| ACACACTCAGACACGGACAT+CGG | + | chr7_1:41034328-41034347 | None:intergenic | 50.0% | |
| ACGAAGCACACACTCAGACA+CGG | + | chr7_1:41034335-41034354 | None:intergenic | 50.0% | |
| ! | TGGTAAGCTTAAGAAGGCGC+AGG | - | chr7_1:41035589-41035608 | Msa1019400:CDS | 50.0% |
| ! | TTAAGAAGGCGCAGGCTCTT+GGG | - | chr7_1:41035597-41035616 | Msa1019400:CDS | 50.0% |
| GACTATGCTCAGGTACACGT+CGG | - | chr7_1:41035619-41035638 | Msa1019400:intron | 50.0% | |
| AGCATAGGCCGTTCACTCTT+GGG | + | chr7_1:41035802-41035821 | None:intergenic | 50.0% | |
| AAGCATAGGCCGTTCACTCT+TGG | + | chr7_1:41035803-41035822 | None:intergenic | 50.0% | |
| GGATATGCTCAATAGCGCCA+TGG | - | chr7_1:41036508-41036527 | Msa1019400:intron | 50.0% | |
| ATGCTCAATAGCGCCATGGT+TGG | - | chr7_1:41036512-41036531 | Msa1019400:intron | 50.0% | |
| ! | TCGACCACTTTAGCTCGCTT+CGG | - | chr7_1:41036614-41036633 | Msa1019400:intron | 50.0% |
| AATGCCGAAGCGAGCTAAAG+TGG | + | chr7_1:41036621-41036640 | None:intergenic | 50.0% | |
| CGGTTCAACCATGGTTGAAC+CGG | + | chr7_1:41036750-41036769 | None:intergenic | 50.0% | |
| CCTTCCGGTCATGGTTCAAT+TGG | + | chr7_1:41036781-41036800 | None:intergenic | 50.0% | |
| CCAATTGAACCATGACCGGA+AGG | - | chr7_1:41036778-41036797 | Msa1019400:intron | 50.0% | |
| ACTGAACTGGTGAGACCTTC+CGG | + | chr7_1:41036796-41036815 | None:intergenic | 50.0% | |
| CTTGCGATCCAACAGTACCT+AGG | + | chr7_1:41037959-41037978 | None:intergenic | 50.0% | |
| ACCACTGAGTTCAATCGTCG+GGG | + | chr7_1:41038107-41038126 | None:intergenic | 50.0% | |
| ! | CTTAAGAAGGCGCAGGCTCT+TGG | - | chr7_1:41035596-41035615 | Msa1019400:CDS | 55.0% |
| AGGCTCTTGGGACTATGCTC+AGG | - | chr7_1:41035609-41035628 | Msa1019400:CDS | 55.0% | |
| GCAAGCATCCCAGACAGTGT+AGG | - | chr7_1:41035832-41035851 | Msa1019400:intron | 55.0% | |
| ! | GCATCCCTCGCCTTTCAAGT+TGG | - | chr7_1:41036068-41036087 | Msa1019400:intron | 55.0% |
| TTCGTCGGACCACCCACTAT+CGG | - | chr7_1:41036119-41036138 | Msa1019400:intron | 55.0% | |
| !! | TTGAGTGGTCCGATAGTGGG+TGG | + | chr7_1:41036131-41036150 | None:intergenic | 55.0% |
| ! | CACGCTCTTGTGTCTAGGAC+TGG | + | chr7_1:41036170-41036189 | None:intergenic | 55.0% |
| ! | TGAAGCCTTATCACACCGGG+TGG | - | chr7_1:41036973-41036992 | Msa1019400:CDS | 55.0% |
| ! | GAAGCCTTATCACACCGGGT+GGG | - | chr7_1:41036974-41036993 | Msa1019400:CDS | 55.0% |
| CAATCCCACCCGGTGTGATA+AGG | + | chr7_1:41036981-41037000 | None:intergenic | 55.0% | |
| CAGGACCTGCTGTCAAACGT+AGG | - | chr7_1:41037823-41037842 | Msa1019400:intron | 55.0% | |
| CGCTTCCTACGTTTGACAGC+AGG | + | chr7_1:41037831-41037850 | None:intergenic | 55.0% | |
| CAATCGTCGGGGACAGAAGT+AGG | + | chr7_1:41038096-41038115 | None:intergenic | 55.0% | |
| TCCCCGACGATTGAACTCAG+TGG | - | chr7_1:41038103-41038122 | Msa1019400:intron | 55.0% | |
| !! | AGGGTGGTGGAATGGAAGGG+TGG | + | chr7_1:41033898-41033917 | None:intergenic | 60.0% |
| GTGGGTGGTCCGACGAATCT+TGG | + | chr7_1:41036116-41036135 | None:intergenic | 60.0% | |
| CTGGTGAGACCTTCCGGTCA+TGG | + | chr7_1:41036790-41036809 | None:intergenic | 60.0% | |
| GAAAGGCGAGGGATGCCTCC+CGG | + | chr7_1:41036064-41036083 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 41033825 | 41039014 | 41033825 | ID=Msa1019400;Name=Msa1019400 |
| chr7_1 | mRNA | 41033825 | 41039014 | 41033825 | ID=Msa1019400-mRNA-1;Parent=Msa1019400;Name=Msa1019400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=530|0.83|0.85|1|0.83|0.71|7|262|239 |
| chr7_1 | exon | 41033825 | 41034226 | 41033825 | ID=Msa1019400-mRNA-1:exon:7984;Parent=Msa1019400-mRNA-1 |
| chr7_1 | exon | 41034406 | 41034527 | 41034406 | ID=Msa1019400-mRNA-1:exon:7983;Parent=Msa1019400-mRNA-1 |
| chr7_1 | exon | 41034836 | 41035013 | 41034836 | ID=Msa1019400-mRNA-1:exon:7982;Parent=Msa1019400-mRNA-1 |
| chr7_1 | exon | 41035550 | 41035634 | 41035550 | ID=Msa1019400-mRNA-1:exon:7981;Parent=Msa1019400-mRNA-1 |
| chr7_1 | exon | 41036969 | 41037120 | 41036969 | ID=Msa1019400-mRNA-1:exon:7980;Parent=Msa1019400-mRNA-1 |
| chr7_1 | exon | 41037209 | 41037352 | 41037209 | ID=Msa1019400-mRNA-1:exon:7979;Parent=Msa1019400-mRNA-1 |
| chr7_1 | exon | 41038586 | 41039014 | 41038586 | ID=Msa1019400-mRNA-1:exon:7978;Parent=Msa1019400-mRNA-1 |
| chr7_1 | five_prime_UTR | 41038586 | 41039014 | 41038586 | ID=Msa1019400-mRNA-1:five_prime_utr;Parent=Msa1019400-mRNA-1 |
| chr7_1 | five_prime_UTR | 41037252 | 41037352 | 41037252 | ID=Msa1019400-mRNA-1:five_prime_utr;Parent=Msa1019400-mRNA-1 |
| chr7_1 | CDS | 41037209 | 41037251 | 41037209 | ID=Msa1019400-mRNA-1:cds;Parent=Msa1019400-mRNA-1 |
| chr7_1 | CDS | 41036969 | 41037120 | 41036969 | ID=Msa1019400-mRNA-1:cds;Parent=Msa1019400-mRNA-1 |
| chr7_1 | CDS | 41035550 | 41035634 | 41035550 | ID=Msa1019400-mRNA-1:cds;Parent=Msa1019400-mRNA-1 |
| chr7_1 | CDS | 41034836 | 41035013 | 41034836 | ID=Msa1019400-mRNA-1:cds;Parent=Msa1019400-mRNA-1 |
| chr7_1 | CDS | 41034406 | 41034527 | 41034406 | ID=Msa1019400-mRNA-1:cds;Parent=Msa1019400-mRNA-1 |
| chr7_1 | CDS | 41034087 | 41034226 | 41034087 | ID=Msa1019400-mRNA-1:cds;Parent=Msa1019400-mRNA-1 |
| chr7_1 | three_prime_UTR | 41033825 | 41034086 | 41033825 | ID=Msa1019400-mRNA-1:three_prime_utr;Parent=Msa1019400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
