AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875130 MtrunA17_Chr6g0456031 97.125 487 11 2 1 485 1 486 0.0 964
Msa0875130 MtrunA17_Chr1g0204511 75.414 423 104 0 59 481 38 460 0.0 680
Msa0875130 MtrunA17_Chr6g0456021 97.333 75 2 0 411 485 10 84 3.76e-48 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875130 AT1G19920.1 75.926 486 106 4 1 485 1 476 0.0 764
Msa0875130 AT3G22890.1 73.636 440 109 2 37 472 13 449 0.0 675
Msa0875130 AT4G14680.1 71.965 453 118 2 38 481 8 460 0.0 672
Msa0875130 AT5G43780.1 75.656 419 98 2 58 475 41 456 0.0 662
Msa0875130 AT4G14680.2 72.182 417 107 2 38 445 8 424 0.0 617

Find 156 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAAATTTGATTCTTAAA+AGG 0.151066 6_1:-11206111 None:intergenic
AGAAACTAATTGTAACTTAA+TGG 0.217487 6_1:-11206500 None:intergenic
CTTAATGGTTAGAGACATTA+TGG 0.240392 6_1:-11206485 None:intergenic
AAAGATTTCCTCTTTATATC+TGG 0.241564 6_1:+11210440 Msa0875130:CDS
AAGTTCTTCTACATAACTTA+TGG 0.273185 6_1:-11212039 None:intergenic
TCTTCTAATGTTGGGTTGAT+TGG 0.284523 6_1:+11207003 Msa0875130:CDS
TCATTGCTCCAGCTGGAAAT+TGG 0.285849 6_1:+11208802 Msa0875130:CDS
TGTATTGGTGGGACCATAAT+TGG 0.287618 6_1:-11206213 None:intergenic
TATGAATGGGTGCATGTTAT+TGG 0.300700 6_1:+11206820 Msa0875130:CDS
AGATGCATCAAAATATGAAT+TGG 0.307760 6_1:-11206182 None:intergenic
GATGAGACTAAAGAGAAAAT+TGG 0.312935 6_1:+11206976 Msa0875130:CDS
ACACTATCTACTAGAACTTA+TGG 0.314779 6_1:-11212108 None:intergenic
ATAACAACCACCTATGACTA+TGG 0.315948 6_1:-11206352 None:intergenic
TAATGAGTTTAGGCCTTGTT+TGG 0.326623 6_1:+11211882 Msa0875130:three_prime_UTR
TGAAAATGAAAGAGATTCTA+AGG 0.334922 6_1:+11206750 Msa0875130:CDS
AAGTTATGTAGAAGAACTTA+TGG 0.336318 6_1:+11212043 Msa0875130:three_prime_UTR
TTTCATTTCCTAATGAGTTT+AGG 0.340392 6_1:+11211872 Msa0875130:three_prime_UTR
GATCAAGAACTCCATCTTCT+AGG 0.341116 6_1:-11209690 None:intergenic
TTGGCTTATCGGAGGAGATT+TGG 0.342784 6_1:+11208821 Msa0875130:CDS
TTTCTTCCAAAACCCACTTT+TGG 0.368462 6_1:+11206598 Msa0875130:CDS
TGCATGTTATTGGTGAAGGT+TGG 0.374830 6_1:+11206830 Msa0875130:CDS
GTGGAGCAGGGTGAGAATAT+TGG 0.374902 6_1:-11206151 None:intergenic
CCAGCTGGAAATTGGCTTAT+CGG 0.378507 6_1:+11208810 Msa0875130:CDS
ATTGGATCTTCTTCTAATGT+TGG 0.394741 6_1:+11206994 Msa0875130:CDS
TTGTTACCAAAAGTGGGTTT+TGG 0.396011 6_1:-11206604 None:intergenic
TTGGATCTTCTTCTAATGTT+GGG 0.397138 6_1:+11206995 Msa0875130:CDS
GCATGTTATTGGTGAAGGTT+GGG 0.397624 6_1:+11206831 Msa0875130:CDS
GCTATCTCCCAAGCAACTTC+GGG 0.399642 6_1:+11208890 Msa0875130:CDS
AAACAAGGCCTAAACTCATT+AGG 0.402457 6_1:-11211880 None:intergenic
TGGCCGCGATCCCGCTGGTA+TGG 0.403827 6_1:+11209825 Msa0875130:CDS
CAACATCTCGATCAAGAATT+CGG 0.404393 6_1:+11211804 Msa0875130:three_prime_UTR
TAACAAAAGTTGATTATGAA+TGG 0.405968 6_1:+11206806 Msa0875130:CDS
GATTGTTAAGAGTAAAACTT+AGG 0.405988 6_1:+11211754 Msa0875130:three_prime_UTR
GAGACATTATGGGAAATTGA+TGG 0.406457 6_1:-11206474 None:intergenic
GGCTATCTCCCAAGCAACTT+CGG 0.407867 6_1:+11208889 Msa0875130:CDS
AGACCGTCATTGTATTTGAT+AGG 0.409505 6_1:-11208855 None:intergenic
GACCTGATGGTGATTGTGTT+GGG 0.410006 6_1:+11207025 Msa0875130:CDS
GATGCAATAGCAATTTGTAT+TGG 0.414032 6_1:-11206228 None:intergenic
TAATGGATTGTTACCAAAAG+TGG 0.419831 6_1:-11206611 None:intergenic
TGATGGAAATATAGAAACTA+TGG 0.425467 6_1:-11209722 None:intergenic
GGGTGTATTAGTAGATCTTA+TGG 0.425869 6_1:+11206723 Msa0875130:CDS
GGCGCCAACTTCTATATTGT+TGG 0.427333 6_1:+11209805 Msa0875130:CDS
TTATGGGAAATTGATGGTTA+TGG 0.427762 6_1:-11206468 None:intergenic
TCCTCAACATAAGGCAATCC+TGG 0.432684 6_1:-11208777 None:intergenic
AAATTCTTCCCGAAGTTGCT+TGG 0.442746 6_1:-11208898 None:intergenic
AATTCTTCCCGAAGTTGCTT+GGG 0.443602 6_1:-11208897 None:intergenic
ACGACGTTCCGTTAGATGTC+AGG 0.444665 6_1:+11209081 Msa0875130:CDS
GATGCATCAAAATATGAATT+GGG 0.445762 6_1:-11206181 None:intergenic
ATTGTGTTGGGATTCTTAGA+AGG 0.449411 6_1:+11207037 Msa0875130:CDS
GGGTCATCCAACTGAGAAAC+GGG 0.451624 6_1:+11209846 Msa0875130:CDS
TGTTCATAGGTCCTAGAAGA+TGG 0.456208 6_1:+11209679 Msa0875130:intron
TCATCAATAGACAAAACAAT+AGG 0.464015 6_1:-11206955 None:intergenic
TCCTGGAGCAGTTGTTCCCC+AGG 0.464917 6_1:-11208760 None:intergenic
GGCCGCGATCCCGCTGGTAT+GGG 0.465516 6_1:+11209826 Msa0875130:CDS
GAAATTGATGGTTATGGTGT+TGG 0.467521 6_1:-11206462 None:intergenic
TTATTGCTTCACCCTCTTGG+AGG 0.470733 6_1:+11209044 Msa0875130:CDS
AACTTCGGGAAGAATTTGAT+AGG 0.477196 6_1:+11208904 Msa0875130:CDS
AGAGGGTGAAGCAATAAAAT+CGG 0.478032 6_1:-11209038 None:intergenic
ATAGAAACTATGGTTGTCTC+AGG 0.480143 6_1:-11209712 None:intergenic
AACAAAAGTTGATTATGAAT+GGG 0.487034 6_1:+11206807 Msa0875130:CDS
GGACCTGATGGTGATTGTGT+TGG 0.489498 6_1:+11207024 Msa0875130:CDS
GACTTGTATGACCCTGATCA+TGG 0.490265 6_1:+11209868 Msa0875130:CDS
GCGAAGGCACGGATAAATGC+AGG 0.491591 6_1:+11209784 Msa0875130:CDS
ATATGAATTGGGACTGAAAG+TGG 0.491966 6_1:-11206170 None:intergenic
GCAATAGCAATTTGTATTGG+TGG 0.492049 6_1:-11206225 None:intergenic
TACAAGTCCCGTTTCTCAGT+TGG 0.492506 6_1:-11209853 None:intergenic
TGGGTCATCCAACTGAGAAA+CGG 0.499633 6_1:+11209845 Msa0875130:CDS
CTTGGGCACATAAATCCATC+TGG 0.501128 6_1:-11211600 None:intergenic
TTAATGGTTAGAGACATTAT+GGG 0.501942 6_1:-11206484 None:intergenic
CGAATTCTTGATCGAGATGT+TGG 0.502053 6_1:-11211803 None:intergenic
ACCTGGGGAACAACTGCTCC+AGG 0.502578 6_1:+11208759 Msa0875130:CDS
GCAATACTACTTACCCTGAA+TGG 0.502969 6_1:-11209940 None:intergenic
AACATGTTCGCCATAGTCAT+AGG 0.503235 6_1:+11206342 Msa0875130:five_prime_UTR
ATTGTTGGCCGCGATCCCGC+TGG 0.508357 6_1:+11209820 Msa0875130:CDS
TCCAGGATTGCCTTATGTTG+AGG 0.509059 6_1:+11208776 Msa0875130:CDS
AAGAAAGAATAGCTAGAACC+TGG 0.509563 6_1:+11208742 Msa0875130:CDS
GCATGCCATTGAACTTCAGT+TGG 0.512655 6_1:-11209763 None:intergenic
ACAAGAACTTTCCATCCACT+TGG 0.514482 6_1:-11211618 None:intergenic
GTGAGAATATTGGACTGAAA+AGG 0.514930 6_1:-11206141 None:intergenic
GCGGCCAACAATATAGAAGT+TGG 0.517834 6_1:-11209809 None:intergenic
CAGGTCCAACTGAAGTTCAA+TGG 0.520945 6_1:+11209758 Msa0875130:CDS
TCCCTCATGAAACCTTTCAA+AGG 0.522904 6_1:-11206859 None:intergenic
TGGATTGGATTCACAAGAAG+TGG 0.523625 6_1:-11206320 None:intergenic
CCATCACCTATGCATTATGC+AGG 0.524244 6_1:+11209739 Msa0875130:CDS
GCAATGACCTCCTCAACATA+AGG 0.526304 6_1:-11208786 None:intergenic
CACAGGATTTCTTAACTGAA+AGG 0.527812 6_1:-11208949 None:intergenic
AGAGAGAAAGATAAGAACGT+GGG 0.529675 6_1:-11206435 None:intergenic
AGTTATGTAGAAGAACTTAT+GGG 0.532307 6_1:+11212044 Msa0875130:three_prime_UTR
CCTCTTTATATCTGGAACCA+AGG 0.532530 6_1:+11210448 Msa0875130:CDS
CAATAGCAATTTGTATTGGT+GGG 0.535222 6_1:-11206224 None:intergenic
CCTTGGTTCCAGATATAAAG+AGG 0.536679 6_1:-11210448 None:intergenic
ATGACGGTCTTGATAACTAC+AGG 0.539122 6_1:+11208868 Msa0875130:CDS
AGAAAGAATAGCTAGAACCT+GGG 0.539463 6_1:+11208743 Msa0875130:CDS
CTATGGCGAACATGTTGGAT+TGG 0.542474 6_1:-11206335 None:intergenic
GAGGAGGTCATTGCTCCAGC+TGG 0.544655 6_1:+11208795 Msa0875130:CDS
ATCCCAACACAATCACCATC+AGG 0.545434 6_1:-11207027 None:intergenic
GCTCTTTGATAGAACCAGAT+GGG 0.548424 6_1:+11206701 Msa0875130:CDS
AATGGATTGTTACCAAAAGT+GGG 0.548530 6_1:-11206610 None:intergenic
GGAAATCTTTAGCACGGCTA+GGG 0.550120 6_1:-11210427 None:intergenic
TTCAATGGCATGCGAAGGCA+CGG 0.550427 6_1:+11209773 Msa0875130:CDS
GATTTATGTGCCCAAGTGGA+TGG 0.551324 6_1:+11211607 Msa0875130:CDS
CAAGAACTTTCCATCCACTT+GGG 0.554086 6_1:-11211617 None:intergenic
AAGGTGCTTAGCATGGCTCC+TGG 0.555425 6_1:+11209895 Msa0875130:CDS
ATTGGGACTGAAAGTGGAGC+AGG 0.555886 6_1:-11206164 None:intergenic
TATGACTATGGCGAACATGT+TGG 0.556711 6_1:-11206340 None:intergenic
ATTGTTAAGAGTAAAACTTA+GGG 0.556928 6_1:+11211755 Msa0875130:three_prime_UTR
GTCCTTTGAAAGGTTTCATG+AGG 0.559187 6_1:+11206857 Msa0875130:CDS
TGGGTGCATGTTATTGGTGA+AGG 0.559832 6_1:+11206826 Msa0875130:CDS
AAAGTTAAGAGAAGAATGCA+AGG 0.565798 6_1:+11206661 Msa0875130:CDS
CCGATAAGCCAATTTCCAGC+TGG 0.566219 6_1:-11208810 None:intergenic
GACCCATACCAGCGGGATCG+CGG 0.569958 6_1:-11209828 None:intergenic
TGCTCCATCCTGACATCTAA+CGG 0.570183 6_1:-11209089 None:intergenic
GGTTGGGCTAGTCCTTTGAA+AGG 0.572293 6_1:+11206847 Msa0875130:CDS
CTCTTTGATAGAACCAGATG+GGG 0.576508 6_1:+11206702 Msa0875130:CDS
GGTTGCAGCTTATGACACTA+AGG 0.577228 6_1:+11210382 Msa0875130:intron
AGGAAATCTTTAGCACGGCT+AGG 0.586050 6_1:-11210428 None:intergenic
AATTCACTTAGGTTGAAGGA+TGG 0.586508 6_1:+11206910 Msa0875130:CDS
GAGAGAGAAAGATAAGAACG+TGG 0.589240 6_1:-11206436 None:intergenic
AGAATATTGGACTGAAAAGG+AGG 0.590066 6_1:-11206138 None:intergenic
GAGAGAAAGATAAGAACGTG+GGG 0.591766 6_1:-11206434 None:intergenic
AGTGGAGAGAATCCACCAGA+TGG 0.593721 6_1:+11211585 Msa0875130:CDS
AAACCTATCAAATACAATGA+CGG 0.595284 6_1:+11208852 Msa0875130:CDS
TGACACTAAGGTAAACAAGA+TGG 0.598361 6_1:+11210394 Msa0875130:CDS
GTTGGATGACCCATACCAGC+GGG 0.598608 6_1:-11209835 None:intergenic
TCGTCAACGTCTATTAGACA+TGG 0.599665 6_1:+11209004 Msa0875130:CDS
TTAAGAAATCCTGTGCATAA+CGG 0.600262 6_1:+11208957 Msa0875130:CDS
AAATGTTTATTACATACTAG+TGG 0.603688 6_1:+11211935 Msa0875130:three_prime_UTR
ATGTTAAGCTTCTCAAGACC+AGG 0.604829 6_1:-11209913 None:intergenic
AGGATTGCCTTATGTTGAGG+AGG 0.606777 6_1:+11208779 Msa0875130:CDS
CCTGCATAATGCATAGGTGA+TGG 0.607380 6_1:-11209739 None:intergenic
GTTGGACCTGCATAATGCAT+AGG 0.607566 6_1:-11209745 None:intergenic
TAAAGAGGAAATCTTTAGCA+CGG 0.607827 6_1:-11210433 None:intergenic
GTTGGGTTGATTGGACCTGA+TGG 0.611348 6_1:+11207012 Msa0875130:CDS
CCCTCTTGGAGGTTTCACAA+AGG 0.611931 6_1:+11209055 Msa0875130:CDS
AAGGCATGACCGTTATGCAC+AGG 0.614440 6_1:-11208966 None:intergenic
TCCTTTGAAAGGTTTCATGA+GGG 0.618890 6_1:+11206858 Msa0875130:CDS
CAGGATGGAGCAACATAGCA+AGG 0.622612 6_1:+11209100 Msa0875130:CDS
AGCTCTTTGATAGAACCAGA+TGG 0.623127 6_1:+11206700 Msa0875130:CDS
TGAAGTTCAATGGCATGCGA+AGG 0.632102 6_1:+11209768 Msa0875130:CDS
ACGAGTATCATTCATTAACA+AGG 0.632393 6_1:-11208985 None:intergenic
GAAAGAATAGCTAGAACCTG+GGG 0.638025 6_1:+11208744 Msa0875130:CDS
TATGTCTAAGAAGATAACAC+AGG 0.658309 6_1:-11211684 None:intergenic
ATGTTCGCCATAGTCATAGG+TGG 0.662506 6_1:+11206345 Msa0875130:five_prime_UTR
CGTTCCGTTAGATGTCAGGA+TGG 0.665784 6_1:+11209085 Msa0875130:CDS
CGTCAACGTCTATTAGACAT+GGG 0.666925 6_1:+11209005 Msa0875130:CDS
GGGCACATAAATCCATCTGG+TGG 0.669860 6_1:-11211597 None:intergenic
GATGGATTTATGTGCCCAAG+TGG 0.673535 6_1:+11211603 Msa0875130:CDS
GCTGGAAATTGGCTTATCGG+AGG 0.681787 6_1:+11208813 Msa0875130:CDS
TTGTGTGGATGAGAAAAGTG+TGG 0.688415 6_1:-11206272 None:intergenic
CCTTTGTGAAACCTCCAAGA+GGG 0.692999 6_1:-11209055 None:intergenic
TTAAACTGTATATCCAAACA+AGG 0.694285 6_1:-11211895 None:intergenic
TTGGGACTGAAAGTGGAGCA+GGG 0.703184 6_1:-11206163 None:intergenic
AGTTGGATGACCCATACCAG+CGG 0.716912 6_1:-11209836 None:intergenic
ACCTTTGTGAAACCTCCAAG+AGG 0.722328 6_1:-11209056 None:intergenic
AGAGAAAGATAAGAACGTGG+GGG 0.731136 6_1:-11206433 None:intergenic
TCTTTGATAGAACCAGATGG+GGG 0.759790 6_1:+11206703 Msa0875130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATTTGATTCTTAAA+AGG - chr6_1:11206114-11206133 None:intergenic 10.0%
!!! ATAGTTTTAGATTAATTTTA+TGG + chr6_1:11207139-11207158 Msa0875130:intron 10.0%
!!! TAGTTTTAGATTAATTTTAT+GGG + chr6_1:11207140-11207159 Msa0875130:intron 10.0%
!! AAAAAAATCATATAATAACC+CGG - chr6_1:11207498-11207517 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr6_1:11208132-11208151 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr6_1:11208131-11208150 Msa0875130:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr6_1:11208155-11208174 Msa0875130:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr6_1:11208258-11208277 Msa0875130:intron 15.0%
!! ATAGAAATATTTCAAATGAA+TGG - chr6_1:11209436-11209455 None:intergenic 15.0%
!!! TGAAATTTTGTACAAAAAAA+TGG - chr6_1:11210196-11210215 None:intergenic 15.0%
!! TGTATCATATATTAATATGT+TGG + chr6_1:11210638-11210657 Msa0875130:intron 15.0%
!! TAATTCCAATCTAAAAAAAT+TGG + chr6_1:11210926-11210945 Msa0875130:intron 15.0%
!!! TTATGTTTTTTTTGATTGTG+TGG - chr6_1:11206290-11206309 None:intergenic 20.0%
!! AGAAACTAATTGTAACTTAA+TGG - chr6_1:11206503-11206522 None:intergenic 20.0%
!!! TTTTGATTAATTTGTTTGCA+TGG - chr6_1:11206546-11206565 None:intergenic 20.0%
!!! AAAAACAAAAACAACACTTT+TGG + chr6_1:11206562-11206581 Msa0875130:CDS 20.0%
!!! TACTTTTTAGTAACAGTTAA+TGG - chr6_1:11206631-11206650 None:intergenic 20.0%
!!! TAACAAAAGTTGATTATGAA+TGG + chr6_1:11206806-11206825 Msa0875130:CDS 20.0%
!!! AACAAAAGTTGATTATGAAT+GGG + chr6_1:11206807-11206826 Msa0875130:CDS 20.0%
!!! AGATTAATTTTATGGGTAAT+TGG + chr6_1:11207147-11207166 Msa0875130:intron 20.0%
!!! TTTTTCCAATGTTATTATCA+TGG + chr6_1:11207188-11207207 Msa0875130:intron 20.0%
!! TTAAACCATGATAATAACAT+TGG - chr6_1:11207196-11207215 None:intergenic 20.0%
!! AAATTATTTGACATCAATTG+CGG + chr6_1:11207408-11207427 Msa0875130:intron 20.0%
!! AAAAAATCATATAATAACCC+GGG - chr6_1:11207497-11207516 None:intergenic 20.0%
!! AATTCTTTACATAGCAAATT+GGG - chr6_1:11207701-11207720 None:intergenic 20.0%
!! AAATTCTTTACATAGCAAAT+TGG - chr6_1:11207702-11207721 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr6_1:11208141-11208160 None:intergenic 20.0%
!!! AATCTAGTTTTAAAACACAA+TGG - chr6_1:11208407-11208426 None:intergenic 20.0%
!! AAAGAAATTGAACTATAACT+CGG - chr6_1:11208476-11208495 None:intergenic 20.0%
!! TTTCTTTAAACTATTCAAAC+TGG + chr6_1:11208489-11208508 Msa0875130:intron 20.0%
!! TTCTTTAAACTATTCAAACT+GGG + chr6_1:11208490-11208509 Msa0875130:intron 20.0%
!! AAATTGAACATGTAAACAAA+CGG - chr6_1:11208596-11208615 None:intergenic 20.0%
!!! GTTCAATTTTTGAATTACAA+TGG + chr6_1:11208607-11208626 Msa0875130:intron 20.0%
!!! TTTTTGAATTACAATGGTTA+TGG + chr6_1:11208613-11208632 Msa0875130:intron 20.0%
!!! GAATCAATTTTGTTTAATAC+CGG + chr6_1:11209160-11209179 Msa0875130:intron 20.0%
!!! CGTTTAAATTTTTAAAGCAT+TGG + chr6_1:11209626-11209645 Msa0875130:intron 20.0%
!! CAATTTATCAGAAAAAGTTT+AGG - chr6_1:11210316-11210335 None:intergenic 20.0%
!! ATAAATATATAGTCTGTGTT+AGG + chr6_1:11210548-11210567 Msa0875130:intron 20.0%
!! ATATATTAATATGTTGGAAC+TGG + chr6_1:11210644-11210663 Msa0875130:intron 20.0%
!! TATATTAATATGTTGGAACT+GGG + chr6_1:11210645-11210664 Msa0875130:intron 20.0%
!! GAAAATTATGTAAAAGACAA+TGG + chr6_1:11210755-11210774 Msa0875130:intron 20.0%
!! TTAGATTGGAATTATTTAAG+AGG - chr6_1:11210920-11210939 None:intergenic 20.0%
!! ATAATGAAATTCGATCTTAA+GGG - chr6_1:11211020-11211039 None:intergenic 20.0%
!! TATAATGAAATTCGATCTTA+AGG - chr6_1:11211021-11211040 None:intergenic 20.0%
!! GAACAATATTTAAAAGATAC+TGG + chr6_1:11211217-11211236 Msa0875130:intron 20.0%
!!! ATTTAAAAAATTGGTTCGTT+AGG + chr6_1:11211394-11211413 Msa0875130:intron 20.0%
!! ATAATGAAATTCGATCTTAA+GGG - chr6_1:11211020-11211039 None:intergenic 20.0%
!! TATAATGAAATTCGATCTTA+AGG - chr6_1:11211021-11211040 None:intergenic 20.0%
!! ATTGTTAAGAGTAAAACTTA+GGG + chr6_1:11211755-11211774 Msa0875130:three_prime_UTR 20.0%
!! AAATGTTTATTACATACTAG+TGG + chr6_1:11211935-11211954 Msa0875130:three_prime_UTR 20.0%
! GATGCATCAAAATATGAATT+GGG - chr6_1:11206184-11206203 None:intergenic 25.0%
! AGATGCATCAAAATATGAAT+TGG - chr6_1:11206185-11206204 None:intergenic 25.0%
!!! CATATTTTGATGCATCTTTT+TGG + chr6_1:11206188-11206207 Msa0875130:five_prime_UTR 25.0%
! TTAATGGTTAGAGACATTAT+GGG - chr6_1:11206487-11206506 None:intergenic 25.0%
!! TTAGAATCTCTTTCATTTTC+AGG - chr6_1:11206751-11206770 None:intergenic 25.0%
! TGAAAATGAAAGAGATTCTA+AGG + chr6_1:11206750-11206769 Msa0875130:CDS 25.0%
!!! ACTTTTGTTAGTTTCACATT+AGG - chr6_1:11206796-11206815 None:intergenic 25.0%
!!! GTTTGCATTTTAATTCACTT+AGG + chr6_1:11206899-11206918 Msa0875130:CDS 25.0%
!!! TTTTAATTCACTTAGGTTGA+AGG + chr6_1:11206906-11206925 Msa0875130:CDS 25.0%
! TCATCAATAGACAAAACAAT+AGG - chr6_1:11206958-11206977 None:intergenic 25.0%
!! TTCTTATGGCATTAATTTTG+TGG + chr6_1:11207071-11207090 Msa0875130:intron 25.0%
!! GCATTAATTTTGTGGTTAAT+TGG + chr6_1:11207079-11207098 Msa0875130:intron 25.0%
! ATTGGAAAAATTAACCAACT+AGG - chr6_1:11207178-11207197 None:intergenic 25.0%
!! TATCATGGTTTAACATTTTG+TGG + chr6_1:11207203-11207222 Msa0875130:intron 25.0%
! ACTGTCTATTTCATTATGTT+GGG + chr6_1:11207602-11207621 Msa0875130:intron 25.0%
!!! AGTTAGAAGATAATGGAATA+AGG + chr6_1:11207639-11207658 Msa0875130:intron 25.0%
!!! GTTAGAAGATAATGGAATAA+GGG + chr6_1:11207640-11207659 Msa0875130:intron 25.0%
!! TGTAGCTTTTGATAAAATCA+GGG + chr6_1:11207922-11207941 Msa0875130:intron 25.0%
! AGAAAAGGTTATTATTGCAT+TGG + chr6_1:11208218-11208237 Msa0875130:intron 25.0%
!!! CAATGTTTTAGAAATTGAAC+CGG + chr6_1:11208430-11208449 Msa0875130:intron 25.0%
! AAACCTATCAAATACAATGA+CGG + chr6_1:11208852-11208871 Msa0875130:CDS 25.0%
!!! TTCCATCATTTTTTCTCATA+TGG + chr6_1:11209127-11209146 Msa0875130:intron 25.0%
! TTGAACTAAATAAAGAAACG+CGG - chr6_1:11209225-11209244 None:intergenic 25.0%
!!! TTTTTAGCATCTACTGTTAT+AGG - chr6_1:11209368-11209387 None:intergenic 25.0%
! ACAGTAGATGCTAAAAAAAT+AGG + chr6_1:11209371-11209390 Msa0875130:intron 25.0%
! AAATTCTTCTTCTTGTTCAT+AGG + chr6_1:11209666-11209685 Msa0875130:intron 25.0%
! TGATGGAAATATAGAAACTA+TGG - chr6_1:11209725-11209744 None:intergenic 25.0%
!!! TTGCTTTTGCACATAAATTT+AGG + chr6_1:11209959-11209978 Msa0875130:intron 25.0%
! TGAAAGAACATATCTCATAT+TGG - chr6_1:11209990-11210009 None:intergenic 25.0%
! ACTTCATATACTAAAGAACA+AGG - chr6_1:11210268-11210287 None:intergenic 25.0%
! GTATTATAAAATGGCAAACA+AGG - chr6_1:11210361-11210380 None:intergenic 25.0%
!!! TGTTTGCCATTTTATAATAC+AGG + chr6_1:11210361-11210380 Msa0875130:intron 25.0%
! AAAGATTTCCTCTTTATATC+TGG + chr6_1:11210440-11210459 Msa0875130:CDS 25.0%
! AAAAAGTAAGTCACATAAAC+AGG - chr6_1:11210783-11210802 None:intergenic 25.0%
!!! TAACTTCAAGTTGTTTTCTT+TGG + chr6_1:11211063-11211082 Msa0875130:intron 25.0%
!! CAGTGTCGAATTTAAAAAAT+TGG + chr6_1:11211385-11211404 Msa0875130:intron 25.0%
! GATTGTTAAGAGTAAAACTT+AGG + chr6_1:11211754-11211773 Msa0875130:three_prime_UTR 25.0%
! TTTCATTTCCTAATGAGTTT+AGG + chr6_1:11211872-11211891 Msa0875130:three_prime_UTR 25.0%
! TTAAACTGTATATCCAAACA+AGG - chr6_1:11211898-11211917 None:intergenic 25.0%
! AAGTTCTTCTACATAACTTA+TGG - chr6_1:11212042-11212061 None:intergenic 25.0%
! AAGTTATGTAGAAGAACTTA+TGG + chr6_1:11212043-11212062 Msa0875130:three_prime_UTR 25.0%
! AGTTATGTAGAAGAACTTAT+GGG + chr6_1:11212044-11212063 Msa0875130:three_prime_UTR 25.0%
! CAATAGCAATTTGTATTGGT+GGG - chr6_1:11206227-11206246 None:intergenic 30.0%
GATGCAATAGCAATTTGTAT+TGG - chr6_1:11206231-11206250 None:intergenic 30.0%
! TTATGGGAAATTGATGGTTA+TGG - chr6_1:11206471-11206490 None:intergenic 30.0%
CTTAATGGTTAGAGACATTA+TGG - chr6_1:11206488-11206507 None:intergenic 30.0%
!! AATGGATTGTTACCAAAAGT+GGG - chr6_1:11206613-11206632 None:intergenic 30.0%
!! TAATGGATTGTTACCAAAAG+TGG - chr6_1:11206614-11206633 None:intergenic 30.0%
AAAGTTAAGAGAAGAATGCA+AGG + chr6_1:11206661-11206680 Msa0875130:CDS 30.0%
GATGAGACTAAAGAGAAAAT+TGG + chr6_1:11206976-11206995 Msa0875130:CDS 30.0%
ATTGGATCTTCTTCTAATGT+TGG + chr6_1:11206994-11207013 Msa0875130:CDS 30.0%
TTGGATCTTCTTCTAATGTT+GGG + chr6_1:11206995-11207014 Msa0875130:CDS 30.0%
AGGTTAGTATAGTGTTCTTA+TGG + chr6_1:11207057-11207076 Msa0875130:intron 30.0%
!!! CACGAAATTTTTTTATAGCC+CGG + chr6_1:11207476-11207495 Msa0875130:intron 30.0%
!!! ACGAAATTTTTTTATAGCCC+GGG + chr6_1:11207477-11207496 Msa0875130:intron 30.0%
GACTGTCTATTTCATTATGT+TGG + chr6_1:11207601-11207620 Msa0875130:intron 30.0%
GTGAAAGAGTTAGAAGATAA+TGG + chr6_1:11207632-11207651 Msa0875130:intron 30.0%
CAGTAAGTTTGATGAAATCA+TGG + chr6_1:11207870-11207889 Msa0875130:intron 30.0%
! CTGTAGCTTTTGATAAAATC+AGG + chr6_1:11207921-11207940 Msa0875130:intron 30.0%
TCTTCAATTCAGTGTATGTT+AGG - chr6_1:11207983-11208002 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr6_1:11208049-11208068 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr6_1:11208050-11208069 Msa0875130:intron 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG + chr6_1:11208180-11208199 Msa0875130:intron 30.0%
! TGTGCAAAGTATTAATTGGA+GGG + chr6_1:11208184-11208203 Msa0875130:intron 30.0%
AGGGTACAATTGAAAAGAAA+AGG + chr6_1:11208203-11208222 Msa0875130:intron 30.0%
ATTTAAGTAAACTCCTGTCA+TGG + chr6_1:11208638-11208657 Msa0875130:intron 30.0%
GAAGTGAAATTAATGGTCAT+TGG - chr6_1:11208689-11208708 None:intergenic 30.0%
CTGCAAAGAAGTGAAATTAA+TGG - chr6_1:11208696-11208715 None:intergenic 30.0%
TTAAGAAATCCTGTGCATAA+CGG + chr6_1:11208957-11208976 Msa0875130:CDS 30.0%
ACGAGTATCATTCATTAACA+AGG - chr6_1:11208988-11209007 None:intergenic 30.0%
ATGCTAAAAAAATAGGACCT+TGG + chr6_1:11209378-11209397 Msa0875130:intron 30.0%
AATTTAAACGTACAGCAAAC+AGG - chr6_1:11209616-11209635 None:intergenic 30.0%
AAGAACATATCTCATATTGG+AGG - chr6_1:11209987-11210006 None:intergenic 30.0%
!! TTGACTTGGATCTGTTTATA+CGG - chr6_1:11210036-11210055 None:intergenic 30.0%
GATTATAATAGCATGCGATT+CGG - chr6_1:11210103-11210122 None:intergenic 30.0%
TCGCATGCTATTATAATCTT+CGG + chr6_1:11210105-11210124 Msa0875130:intron 30.0%
!!! TTCAGCTTTTATCGATTTTG+AGG - chr6_1:11210147-11210166 None:intergenic 30.0%
CTGCAACCTGTATTATAAAA+TGG - chr6_1:11210370-11210389 None:intergenic 30.0%
TAAAGAGGAAATCTTTAGCA+CGG - chr6_1:11210436-11210455 None:intergenic 30.0%
TGATTGAGAATATGATACCT+TGG - chr6_1:11210468-11210487 None:intergenic 30.0%
!!! CGGAACCAATTTTTTTAGAT+TGG - chr6_1:11210934-11210953 None:intergenic 30.0%
! CTAAAAAAATTGGTTCCGTT+CGG + chr6_1:11210936-11210955 Msa0875130:intron 30.0%
TTAAATTCGACACTGTTAAG+AGG - chr6_1:11211380-11211399 None:intergenic 30.0%
! TAACATCAAGTTGTAACCTT+TGG + chr6_1:11211528-11211547 Msa0875130:intron 30.0%
CTGAAAAAACAAATCACCAA+AGG - chr6_1:11211547-11211566 None:intergenic 30.0%
!!! GTGATTTGTTTTTTCAGATG+AGG + chr6_1:11211550-11211569 Msa0875130:intron 30.0%
TATGTCTAAGAAGATAACAC+AGG - chr6_1:11211687-11211706 None:intergenic 30.0%
ACACTATCTACTAGAACTTA+TGG - chr6_1:11212111-11212130 None:intergenic 30.0%
AGAATATTGGACTGAAAAGG+AGG - chr6_1:11206141-11206160 None:intergenic 35.0%
GTGAGAATATTGGACTGAAA+AGG - chr6_1:11206144-11206163 None:intergenic 35.0%
ATATGAATTGGGACTGAAAG+TGG - chr6_1:11206173-11206192 None:intergenic 35.0%
!! CATCTTTTTGGCACCAATTA+TGG + chr6_1:11206200-11206219 Msa0875130:five_prime_UTR 35.0%
GCAATAGCAATTTGTATTGG+TGG - chr6_1:11206228-11206247 None:intergenic 35.0%
ATAACAACCACCTATGACTA+TGG - chr6_1:11206355-11206374 None:intergenic 35.0%
AGAGAGAAAGATAAGAACGT+GGG - chr6_1:11206438-11206457 None:intergenic 35.0%
! GAAATTGATGGTTATGGTGT+TGG - chr6_1:11206465-11206484 None:intergenic 35.0%
GAGACATTATGGGAAATTGA+TGG - chr6_1:11206477-11206496 None:intergenic 35.0%
! TTTCTTCCAAAACCCACTTT+TGG + chr6_1:11206598-11206617 Msa0875130:CDS 35.0%
!! TTGTTACCAAAAGTGGGTTT+TGG - chr6_1:11206607-11206626 None:intergenic 35.0%
GGGTGTATTAGTAGATCTTA+TGG + chr6_1:11206723-11206742 Msa0875130:CDS 35.0%
TATGAATGGGTGCATGTTAT+TGG + chr6_1:11206820-11206839 Msa0875130:CDS 35.0%
! TCCTTTGAAAGGTTTCATGA+GGG + chr6_1:11206858-11206877 Msa0875130:CDS 35.0%
!! AATTCACTTAGGTTGAAGGA+TGG + chr6_1:11206910-11206929 Msa0875130:CDS 35.0%
!! TCTTCTAATGTTGGGTTGAT+TGG + chr6_1:11207003-11207022 Msa0875130:CDS 35.0%
ATTGTGTTGGGATTCTTAGA+AGG + chr6_1:11207037-11207056 Msa0875130:CDS 35.0%
GGTAATTGGTATTTCCTAGT+TGG + chr6_1:11207161-11207180 Msa0875130:intron 35.0%
GCTGTATAGATCACGATATT+TGG + chr6_1:11207359-11207378 Msa0875130:intron 35.0%
CATTAAAAACCTTGATGTCG+AGG + chr6_1:11207440-11207459 Msa0875130:intron 35.0%
GACTTTGTCAACGAATTCAT+AGG + chr6_1:11207794-11207813 Msa0875130:intron 35.0%
! CTTTTATCACCTTCCAATTG+AGG - chr6_1:11207828-11207847 None:intergenic 35.0%
CTCAATTGGAAGGTGATAAA+AGG + chr6_1:11207826-11207845 Msa0875130:intron 35.0%
! AGCTTTTGATAAAATCAGGG+CGG + chr6_1:11207925-11207944 Msa0875130:intron 35.0%
CCATAAGTTTGGCAAAATCA+AGG - chr6_1:11207955-11207974 None:intergenic 35.0%
! CCTTGATTTTGCCAAACTTA+TGG + chr6_1:11207952-11207971 Msa0875130:intron 35.0%
GTTAGGATTGACCATAAGTT+TGG - chr6_1:11207966-11207985 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+AGG + chr6_1:11208183-11208202 Msa0875130:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr6_1:11208248-11208267 Msa0875130:intron 35.0%
TTTCACACATCTCACATACA+TGG + chr6_1:11208332-11208351 Msa0875130:intron 35.0%
GAAATTGAACTATAACTCGG+AGG - chr6_1:11208473-11208492 None:intergenic 35.0%
ATCTCAGTTCATGGTTTAAC+TGG + chr6_1:11208561-11208580 Msa0875130:intron 35.0%
TGAACATGTAAACAAACGGA+CGG - chr6_1:11208592-11208611 None:intergenic 35.0%
AAGAAAGAATAGCTAGAACC+TGG + chr6_1:11208742-11208761 Msa0875130:CDS 35.0%
AGAAAGAATAGCTAGAACCT+GGG + chr6_1:11208743-11208762 Msa0875130:CDS 35.0%
AGACCGTCATTGTATTTGAT+AGG - chr6_1:11208858-11208877 None:intergenic 35.0%
AACTTCGGGAAGAATTTGAT+AGG + chr6_1:11208904-11208923 Msa0875130:CDS 35.0%
CACAGGATTTCTTAACTGAA+AGG - chr6_1:11208952-11208971 None:intergenic 35.0%
AGAGGGTGAAGCAATAAAAT+CGG - chr6_1:11209041-11209060 None:intergenic 35.0%
! ATTTTATTGCTTCACCCTCT+TGG + chr6_1:11209041-11209060 Msa0875130:CDS 35.0%
CGCCATATGAGAAAAAATGA+TGG - chr6_1:11209132-11209151 None:intergenic 35.0%
AAAAAATAGGACCTTGGAAG+TGG + chr6_1:11209384-11209403 Msa0875130:intron 35.0%
CTATTTGAGAAGTTCAACTG+TGG + chr6_1:11209545-11209564 Msa0875130:intron 35.0%
! TGGTTAAACTGCTTTAAACC+AGG - chr6_1:11209577-11209596 None:intergenic 35.0%
AGCAAACAGGAAAGATCTAT+AGG - chr6_1:11209603-11209622 None:intergenic 35.0%
ATAGAAACTATGGTTGTCTC+AGG - chr6_1:11209715-11209734 None:intergenic 35.0%
! AGCTTAACATTTTGCCATTC+AGG + chr6_1:11209926-11209945 Msa0875130:CDS 35.0%
! GCTTAACATTTTGCCATTCA+GGG + chr6_1:11209927-11209946 Msa0875130:CDS 35.0%
AAAAATGGACAGCATTGTGA+GGG - chr6_1:11210181-11210200 None:intergenic 35.0%
AAAAAATGGACAGCATTGTG+AGG - chr6_1:11210182-11210201 None:intergenic 35.0%
ACACCATGTATCCTATTGTT+GGG + chr6_1:11210222-11210241 Msa0875130:intron 35.0%
TGACACTAAGGTAAACAAGA+TGG + chr6_1:11210394-11210413 Msa0875130:CDS 35.0%
! TTTTGGACATTGACACTTCT+CGG + chr6_1:11210869-11210888 Msa0875130:intron 35.0%
ATGTTCAAGACATGTCTAAC+AGG - chr6_1:11210964-11210983 None:intergenic 35.0%
! ATGAGGTCTTATGCAAAAAG+TGG + chr6_1:11211567-11211586 Msa0875130:CDS 35.0%
GGAAGACCATGCATAAAAAT+TGG - chr6_1:11211785-11211804 None:intergenic 35.0%
CAACATCTCGATCAAGAATT+CGG + chr6_1:11211804-11211823 Msa0875130:three_prime_UTR 35.0%
AAACAAGGCCTAAACTCATT+AGG - chr6_1:11211883-11211902 None:intergenic 35.0%
!! TAATGAGTTTAGGCCTTGTT+TGG + chr6_1:11211882-11211901 Msa0875130:three_prime_UTR 35.0%
! TGTATTGGTGGGACCATAAT+TGG - chr6_1:11206216-11206235 None:intergenic 40.0%
TTGTGTGGATGAGAAAAGTG+TGG - chr6_1:11206275-11206294 None:intergenic 40.0%
! TGGATTGGATTCACAAGAAG+TGG - chr6_1:11206323-11206342 None:intergenic 40.0%
TATGACTATGGCGAACATGT+TGG - chr6_1:11206343-11206362 None:intergenic 40.0%
AACATGTTCGCCATAGTCAT+AGG + chr6_1:11206342-11206361 Msa0875130:five_prime_UTR 40.0%
AGAGAAAGATAAGAACGTGG+GGG - chr6_1:11206436-11206455 None:intergenic 40.0%
GAGAGAAAGATAAGAACGTG+GGG - chr6_1:11206437-11206456 None:intergenic 40.0%
GAGAGAGAAAGATAAGAACG+TGG - chr6_1:11206439-11206458 None:intergenic 40.0%
AGCTCTTTGATAGAACCAGA+TGG + chr6_1:11206700-11206719 Msa0875130:CDS 40.0%
GCTCTTTGATAGAACCAGAT+GGG + chr6_1:11206701-11206720 Msa0875130:CDS 40.0%
CTCTTTGATAGAACCAGATG+GGG + chr6_1:11206702-11206721 Msa0875130:CDS 40.0%
TCTTTGATAGAACCAGATGG+GGG + chr6_1:11206703-11206722 Msa0875130:CDS 40.0%
TGCATGTTATTGGTGAAGGT+TGG + chr6_1:11206830-11206849 Msa0875130:CDS 40.0%
GCATGTTATTGGTGAAGGTT+GGG + chr6_1:11206831-11206850 Msa0875130:CDS 40.0%
! GTCCTTTGAAAGGTTTCATG+AGG + chr6_1:11206857-11206876 Msa0875130:CDS 40.0%
TCCCTCATGAAACCTTTCAA+AGG - chr6_1:11206862-11206881 None:intergenic 40.0%
TCGTACATGACTTCAATCTG+AGG + chr6_1:11207329-11207348 Msa0875130:intron 40.0%
! ATGACTTCAATCTGAGGTGT+CGG + chr6_1:11207335-11207354 Msa0875130:intron 40.0%
TTTGACATCAATTGCGGTCA+TGG + chr6_1:11207414-11207433 Msa0875130:intron 40.0%
ATAGGTCCAAGAACCTCAAT+TGG + chr6_1:11207812-11207831 Msa0875130:intron 40.0%
! GCTTTTGATAAAATCAGGGC+GGG + chr6_1:11207926-11207945 Msa0875130:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr6_1:11208288-11208307 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr6_1:11208288-11208307 Msa0875130:intron 40.0%
GAAAGAATAGCTAGAACCTG+GGG + chr6_1:11208744-11208763 Msa0875130:CDS 40.0%
! ATGACGGTCTTGATAACTAC+AGG + chr6_1:11208868-11208887 Msa0875130:CDS 40.0%
AATTCTTCCCGAAGTTGCTT+GGG - chr6_1:11208900-11208919 None:intergenic 40.0%
AAATTCTTCCCGAAGTTGCT+TGG - chr6_1:11208901-11208920 None:intergenic 40.0%
TCGTCAACGTCTATTAGACA+TGG + chr6_1:11209004-11209023 Msa0875130:CDS 40.0%
CGTCAACGTCTATTAGACAT+GGG + chr6_1:11209005-11209024 Msa0875130:CDS 40.0%
AAACCTCTACTCTATAGCAC+CGG - chr6_1:11209182-11209201 None:intergenic 40.0%
TTACAGTTCATCCACTTCCA+AGG - chr6_1:11209398-11209417 None:intergenic 40.0%
ATCAAACCAAACTGTTCCAC+TGG + chr6_1:11209489-11209508 Msa0875130:intron 40.0%
CAGGAAAGATCTATAGGTCA+TGG - chr6_1:11209597-11209616 None:intergenic 40.0%
TGTTCATAGGTCCTAGAAGA+TGG + chr6_1:11209679-11209698 Msa0875130:intron 40.0%
GATCAAGAACTCCATCTTCT+AGG - chr6_1:11209693-11209712 None:intergenic 40.0%
TGACCCTGATCATGGAAAAA+AGG + chr6_1:11209876-11209895 Msa0875130:CDS 40.0%
!!! GCACCTTTTTTCCATGATCA+GGG - chr6_1:11209882-11209901 None:intergenic 40.0%
!!! AGCACCTTTTTTCCATGATC+AGG - chr6_1:11209883-11209902 None:intergenic 40.0%
!! TGGAAAAAAGGTGCTTAGCA+TGG + chr6_1:11209888-11209907 Msa0875130:CDS 40.0%
ATGTTAAGCTTCTCAAGACC+AGG - chr6_1:11209916-11209935 None:intergenic 40.0%
GCAATACTACTTACCCTGAA+TGG - chr6_1:11209943-11209962 None:intergenic 40.0%
!! TAATAGCATGCGATTCGGTT+CGG - chr6_1:11210098-11210117 None:intergenic 40.0%
AAAATGGACAGCATTGTGAG+GGG - chr6_1:11210180-11210199 None:intergenic 40.0%
CACACCATGTATCCTATTGT+TGG + chr6_1:11210221-11210240 Msa0875130:intron 40.0%
CACCATGTATCCTATTGTTG+GGG + chr6_1:11210223-11210242 Msa0875130:intron 40.0%
ATCCCCAACAATAGGATACA+TGG - chr6_1:11210228-11210247 None:intergenic 40.0%
ATGTATCCTATTGTTGGGGA+TGG + chr6_1:11210227-11210246 Msa0875130:intron 40.0%
CCTTGGTTCCAGATATAAAG+AGG - chr6_1:11210451-11210470 None:intergenic 40.0%
! CCTCTTTATATCTGGAACCA+AGG + chr6_1:11210448-11210467 Msa0875130:CDS 40.0%
AGGTTTACAATGACAGATCC+TGG + chr6_1:11210568-11210587 Msa0875130:intron 40.0%
! AGGTGTCTGACATGTTTTCA+AGG - chr6_1:11210900-11210919 None:intergenic 40.0%
TTGAACATGCACCAAGAGAA+TGG + chr6_1:11210976-11210995 Msa0875130:intron 40.0%
TGAACATGCACCAAGAGAAT+GGG + chr6_1:11210977-11210996 Msa0875130:intron 40.0%
!! ACCTCTCCAAAGTGTTGTTT+CGG + chr6_1:11211293-11211312 Msa0875130:intron 40.0%
! AAGGTGTGTCTGAAAAGTGT+CGG - chr6_1:11211341-11211360 None:intergenic 40.0%
CAAGAACTTTCCATCCACTT+GGG - chr6_1:11211620-11211639 None:intergenic 40.0%
ACAAGAACTTTCCATCCACT+TGG - chr6_1:11211621-11211640 None:intergenic 40.0%
!! GGAGTGCCAATTTTTATGCA+TGG + chr6_1:11211776-11211795 Msa0875130:three_prime_UTR 40.0%
CGAATTCTTGATCGAGATGT+TGG - chr6_1:11211806-11211825 None:intergenic 40.0%
CTATGGCGAACATGTTGGAT+TGG - chr6_1:11206338-11206357 None:intergenic 45.0%
ATGTTCGCCATAGTCATAGG+TGG + chr6_1:11206345-11206364 Msa0875130:five_prime_UTR 45.0%
TCTACTAATACACCCCCATC+TGG - chr6_1:11206718-11206737 None:intergenic 45.0%
TGGGTGCATGTTATTGGTGA+AGG + chr6_1:11206826-11206845 Msa0875130:CDS 45.0%
! GACCTGATGGTGATTGTGTT+GGG + chr6_1:11207025-11207044 Msa0875130:CDS 45.0%
ATCCCAACACAATCACCATC+AGG - chr6_1:11207030-11207049 None:intergenic 45.0%
CAATTTGAGCCTCGACATCA+AGG - chr6_1:11207452-11207471 None:intergenic 45.0%
GTCCAAGAACCTCAATTGGA+AGG + chr6_1:11207816-11207835 Msa0875130:intron 45.0%
CACCTTCCAATTGAGGTTCT+TGG - chr6_1:11207821-11207840 None:intergenic 45.0%
GGCTGAGTACATGTTTCGAT+TGG + chr6_1:11207847-11207866 Msa0875130:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr6_1:11208287-11208306 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr6_1:11208287-11208306 Msa0875130:intron 45.0%
TTGAACCGGACATCAAACTG+AGG + chr6_1:11208444-11208463 Msa0875130:intron 45.0%
!! TGTCTCCGGTTCGGTAATTT+GGG - chr6_1:11208541-11208560 None:intergenic 45.0%
!! TTGTCTCCGGTTCGGTAATT+TGG - chr6_1:11208542-11208561 None:intergenic 45.0%
AACTGAGATTGTCTCCGGTT+CGG - chr6_1:11208550-11208569 None:intergenic 45.0%
CCATGAACTGAGATTGTCTC+CGG - chr6_1:11208555-11208574 None:intergenic 45.0%
GAAAACTCAGACACCATGAC+AGG - chr6_1:11208654-11208673 None:intergenic 45.0%
TCCAGGATTGCCTTATGTTG+AGG + chr6_1:11208776-11208795 Msa0875130:CDS 45.0%
TCCTCAACATAAGGCAATCC+TGG - chr6_1:11208780-11208799 None:intergenic 45.0%
AGGATTGCCTTATGTTGAGG+AGG + chr6_1:11208779-11208798 Msa0875130:CDS 45.0%
GCAATGACCTCCTCAACATA+AGG - chr6_1:11208789-11208808 None:intergenic 45.0%
TCATTGCTCCAGCTGGAAAT+TGG + chr6_1:11208802-11208821 Msa0875130:CDS 45.0%
! CCAGCTGGAAATTGGCTTAT+CGG + chr6_1:11208810-11208829 Msa0875130:CDS 45.0%
TTGGCTTATCGGAGGAGATT+TGG + chr6_1:11208821-11208840 Msa0875130:CDS 45.0%
TTATTGCTTCACCCTCTTGG+AGG + chr6_1:11209044-11209063 Msa0875130:CDS 45.0%
CCTTTGTGAAACCTCCAAGA+GGG - chr6_1:11209058-11209077 None:intergenic 45.0%
ACCTTTGTGAAACCTCCAAG+AGG - chr6_1:11209059-11209078 None:intergenic 45.0%
TGCTCCATCCTGACATCTAA+CGG - chr6_1:11209092-11209111 None:intergenic 45.0%
!! ATACCGGTGCTATAGAGTAG+AGG + chr6_1:11209176-11209195 Msa0875130:intron 45.0%
GCTATGCAACAGTTCTACAG+CGG - chr6_1:11209274-11209293 None:intergenic 45.0%
ACTCAACCAGTGGAACAGTT+TGG - chr6_1:11209498-11209517 None:intergenic 45.0%
TTGTGATCGAGAACTGTCTG+TGG + chr6_1:11209517-11209536 Msa0875130:intron 45.0%
CCTGCATAATGCATAGGTGA+TGG - chr6_1:11209742-11209761 None:intergenic 45.0%
CCATCACCTATGCATTATGC+AGG + chr6_1:11209739-11209758 Msa0875130:CDS 45.0%
GTTGGACCTGCATAATGCAT+AGG - chr6_1:11209748-11209767 None:intergenic 45.0%
CAGGTCCAACTGAAGTTCAA+TGG + chr6_1:11209758-11209777 Msa0875130:CDS 45.0%
GCATGCCATTGAACTTCAGT+TGG - chr6_1:11209766-11209785 None:intergenic 45.0%
TGAAGTTCAATGGCATGCGA+AGG + chr6_1:11209768-11209787 Msa0875130:CDS 45.0%
GGCGCCAACTTCTATATTGT+TGG + chr6_1:11209805-11209824 Msa0875130:CDS 45.0%
GCGGCCAACAATATAGAAGT+TGG - chr6_1:11209812-11209831 None:intergenic 45.0%
TGGGTCATCCAACTGAGAAA+CGG + chr6_1:11209845-11209864 Msa0875130:CDS 45.0%
TACAAGTCCCGTTTCTCAGT+TGG - chr6_1:11209856-11209875 None:intergenic 45.0%
GACTTGTATGACCCTGATCA+TGG + chr6_1:11209868-11209887 Msa0875130:CDS 45.0%
!! CGTTGAAGTGCTGTTTGACT+TGG - chr6_1:11210050-11210069 None:intergenic 45.0%
AAATGGACAGCATTGTGAGG+GGG - chr6_1:11210179-11210198 None:intergenic 45.0%
CATTTGCCATCCCCAACAAT+AGG - chr6_1:11210236-11210255 None:intergenic 45.0%
CTATTGTTGGGGATGGCAAA+TGG + chr6_1:11210234-11210253 Msa0875130:intron 45.0%
GGTTGCAGCTTATGACACTA+AGG + chr6_1:11210382-11210401 Msa0875130:intron 45.0%
GGAAATCTTTAGCACGGCTA+GGG - chr6_1:11210430-11210449 None:intergenic 45.0%
AGGAAATCTTTAGCACGGCT+AGG - chr6_1:11210431-11210450 None:intergenic 45.0%
TAAAGCAAGACGTAGGAACC+AGG - chr6_1:11210589-11210608 None:intergenic 45.0%
GCTGTGATAAAGCAAGACGT+AGG - chr6_1:11210596-11210615 None:intergenic 45.0%
!! GAGAGGTGTTTGTGCTTCTT+AGG - chr6_1:11210820-11210839 None:intergenic 45.0%
! TCGGCGTGTCATACACATTT+TGG + chr6_1:11210852-11210871 Msa0875130:intron 45.0%
! ACCGAAACAACACTTTGGAG+AGG - chr6_1:11211297-11211316 None:intergenic 45.0%
GACACACCGAAACAACACTT+TGG - chr6_1:11211302-11211321 None:intergenic 45.0%
TCGGTGTGTCAGACACATTT+CGG + chr6_1:11211312-11211331 Msa0875130:intron 45.0%
AGGTGTCTAACATGCGTTGA+AGG - chr6_1:11211360-11211379 None:intergenic 45.0%
GTGTTGAAGACATGTCTAGC+AGG - chr6_1:11211423-11211442 None:intergenic 45.0%
TTCAACACGCACTAAGAGAC+TGG + chr6_1:11211435-11211454 Msa0875130:intron 45.0%
TCAACACGCACTAAGAGACT+GGG + chr6_1:11211436-11211455 Msa0875130:intron 45.0%
CTTGGGCACATAAATCCATC+TGG - chr6_1:11211603-11211622 None:intergenic 45.0%
! GATGGATTTATGTGCCCAAG+TGG + chr6_1:11211603-11211622 Msa0875130:CDS 45.0%
GATTTATGTGCCCAAGTGGA+TGG + chr6_1:11211607-11211626 Msa0875130:CDS 45.0%
!!! ATTATATGATTTTTTTTTTA+CGG + chr6_1:11207502-11207521 Msa0875130:intron 5.0%
GTGGAGCAGGGTGAGAATAT+TGG - chr6_1:11206154-11206173 None:intergenic 50.0%
TTGGGACTGAAAGTGGAGCA+GGG - chr6_1:11206166-11206185 None:intergenic 50.0%
ATTGGGACTGAAAGTGGAGC+AGG - chr6_1:11206167-11206186 None:intergenic 50.0%
!! GGTTGGGCTAGTCCTTTGAA+AGG + chr6_1:11206847-11206866 Msa0875130:CDS 50.0%
!! GTTGGGTTGATTGGACCTGA+TGG + chr6_1:11207012-11207031 Msa0875130:CDS 50.0%
! GGACCTGATGGTGATTGTGT+TGG + chr6_1:11207024-11207043 Msa0875130:CDS 50.0%
GGTCTCCTCAGTTTGATGTC+CGG - chr6_1:11208452-11208471 None:intergenic 50.0%
!! GTTCGGTAATTTGGGTTGGG+AGG - chr6_1:11208533-11208552 None:intergenic 50.0%
!! CCGGTTCGGTAATTTGGGTT+GGG - chr6_1:11208536-11208555 None:intergenic 50.0%
CCCAACCCAAATTACCGAAC+CGG + chr6_1:11208533-11208552 Msa0875130:intron 50.0%
!! TCCGGTTCGGTAATTTGGGT+TGG - chr6_1:11208537-11208556 None:intergenic 50.0%
CCGGAGACAATCTCAGTTCA+TGG + chr6_1:11208552-11208571 Msa0875130:intron 50.0%
CCGATAAGCCAATTTCCAGC+TGG - chr6_1:11208813-11208832 None:intergenic 50.0%
! GCTGGAAATTGGCTTATCGG+AGG + chr6_1:11208813-11208832 Msa0875130:CDS 50.0%
GGCTATCTCCCAAGCAACTT+CGG + chr6_1:11208889-11208908 Msa0875130:CDS 50.0%
GCTATCTCCCAAGCAACTTC+GGG + chr6_1:11208890-11208909 Msa0875130:CDS 50.0%
AAGGCATGACCGTTATGCAC+AGG - chr6_1:11208969-11208988 None:intergenic 50.0%
CCCTCTTGGAGGTTTCACAA+AGG + chr6_1:11209055-11209074 Msa0875130:CDS 50.0%
ACGACGTTCCGTTAGATGTC+AGG + chr6_1:11209081-11209100 Msa0875130:CDS 50.0%
CGTTCCGTTAGATGTCAGGA+TGG + chr6_1:11209085-11209104 Msa0875130:CDS 50.0%
CAGGATGGAGCAACATAGCA+AGG + chr6_1:11209100-11209119 Msa0875130:CDS 50.0%
!! GCGCTATTTTCCGCAATCTG+CGG + chr6_1:11209310-11209329 Msa0875130:intron 50.0%
CTCGATCACAACTCAACCAG+TGG - chr6_1:11209508-11209527 None:intergenic 50.0%
GTTCAACTGTGGTTTCGTCC+TGG + chr6_1:11209556-11209575 Msa0875130:intron 50.0%
TTCAATGGCATGCGAAGGCA+CGG + chr6_1:11209773-11209792 Msa0875130:CDS 50.0%
AGTTGGATGACCCATACCAG+CGG - chr6_1:11209839-11209858 None:intergenic 50.0%
GGGTCATCCAACTGAGAAAC+GGG + chr6_1:11209846-11209865 Msa0875130:CDS 50.0%
!! ACCTCTCCAGAGTGTTGTGT+CGG + chr6_1:11210833-11210852 Msa0875130:intron 50.0%
!! GAGAGGTGTTTGTGCTTCTG+AGG - chr6_1:11211280-11211299 None:intergenic 50.0%
AGTGGAGAGAATCCACCAGA+TGG + chr6_1:11211585-11211604 Msa0875130:CDS 50.0%
GGGCACATAAATCCATCTGG+TGG - chr6_1:11211600-11211619 None:intergenic 50.0%
! TGGGTTGGGAGGTTCAACTG+CGG - chr6_1:11208522-11208541 None:intergenic 55.0%
CTGCTGTCAACCGCAGATTG+CGG - chr6_1:11209323-11209342 None:intergenic 55.0%
CAATCTGCGGTTGACAGCAG+TGG + chr6_1:11209323-11209342 Msa0875130:intron 55.0%
! GCGAAGGCACGGATAAATGC+AGG + chr6_1:11209784-11209803 Msa0875130:CDS 55.0%
GTTGGATGACCCATACCAGC+GGG - chr6_1:11209838-11209857 None:intergenic 55.0%
! AAGGTGCTTAGCATGGCTCC+TGG + chr6_1:11209895-11209914 Msa0875130:CDS 55.0%
!! CATGTCTAACAGGCGCCGAA+CGG - chr6_1:11210954-11210973 None:intergenic 55.0%
!! TAAGGGCACTGACCAGGCAT+CGG - chr6_1:11211003-11211022 None:intergenic 55.0%
!! CGATCTTAAGGGCACTGACC+AGG - chr6_1:11211009-11211028 None:intergenic 55.0%
ACCTGGGGAACAACTGCTCC+AGG + chr6_1:11208759-11208778 Msa0875130:CDS 60.0%
TCCTGGAGCAGTTGTTCCCC+AGG - chr6_1:11208763-11208782 None:intergenic 60.0%
GAGGAGGTCATTGCTCCAGC+TGG + chr6_1:11208795-11208814 Msa0875130:CDS 60.0%
! GCCGACACAACACTCTGGAG+AGG - chr6_1:11210837-11210856 None:intergenic 60.0%
GACACGCCGACACAACACTC+TGG - chr6_1:11210842-11210861 None:intergenic 60.0%
!! CAGGCATCGGCCCATTCTCT+TGG - chr6_1:11210990-11211009 None:intergenic 60.0%
CAAGAGAATGGGCCGATGCC+TGG + chr6_1:11210988-11211007 Msa0875130:intron 60.0%
TAAGAGACTGGGCCGACACC+TGG + chr6_1:11211447-11211466 Msa0875130:intron 60.0%
ATTGTTGGCCGCGATCCCGC+TGG + chr6_1:11209820-11209839 Msa0875130:CDS 65.0%
GACCCATACCAGCGGGATCG+CGG - chr6_1:11209831-11209850 None:intergenic 65.0%
ACTGGGCCGACACCTGGTCA+GGG + chr6_1:11211453-11211472 Msa0875130:intron 65.0%
CTGAGCCCCTGACCAGGTGT+CGG - chr6_1:11211462-11211481 None:intergenic 65.0%
GACACCTGGTCAGGGGCTCA+GGG + chr6_1:11211461-11211480 Msa0875130:intron 65.0%
TGGCCGCGATCCCGCTGGTA+TGG + chr6_1:11209825-11209844 Msa0875130:CDS 70.0%
GGCCGCGATCCCGCTGGTAT+GGG + chr6_1:11209826-11209845 Msa0875130:CDS 70.0%
GACTGGGCCGACACCTGGTC+AGG + chr6_1:11211452-11211471 Msa0875130:intron 70.0%
CTGGGCCGACACCTGGTCAG+GGG + chr6_1:11211454-11211473 Msa0875130:intron 70.0%
CGACACCTGGTCAGGGGCTC+AGG + chr6_1:11211460-11211479 Msa0875130:intron 70.0%
AGGGCCCTGAGCCCCTGACC+AGG - chr6_1:11211468-11211487 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 11206060 11212174 11206060 ID=Msa0875130;Name=Msa0875130
chr6_1 mRNA 11206060 11212174 11206060 ID=Msa0875130-mRNA-1;Parent=Msa0875130;Name=Msa0875130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=430|1|1|1|1|1|5|473|485
chr6_1 exon 11206060 11207058 11206060 ID=Msa0875130-mRNA-1:exon:3477;Parent=Msa0875130-mRNA-1
chr6_1 exon 11208716 11209121 11208716 ID=Msa0875130-mRNA-1:exon:3478;Parent=Msa0875130-mRNA-1
chr6_1 exon 11209688 11209948 11209688 ID=Msa0875130-mRNA-1:exon:3479;Parent=Msa0875130-mRNA-1
chr6_1 exon 11210383 11210469 11210383 ID=Msa0875130-mRNA-1:exon:3480;Parent=Msa0875130-mRNA-1
chr6_1 exon 11211567 11212174 11211567 ID=Msa0875130-mRNA-1:exon:3481;Parent=Msa0875130-mRNA-1
chr6_1 five_prime_UTR 11206060 11206489 11206060 ID=Msa0875130-mRNA-1:five_prime_utr;Parent=Msa0875130-mRNA-1
chr6_1 CDS 11206490 11207058 11206490 ID=Msa0875130-mRNA-1:cds;Parent=Msa0875130-mRNA-1
chr6_1 CDS 11208716 11209121 11208716 ID=Msa0875130-mRNA-1:cds;Parent=Msa0875130-mRNA-1
chr6_1 CDS 11209688 11209948 11209688 ID=Msa0875130-mRNA-1:cds;Parent=Msa0875130-mRNA-1
chr6_1 CDS 11210383 11210469 11210383 ID=Msa0875130-mRNA-1:cds;Parent=Msa0875130-mRNA-1
chr6_1 CDS 11211567 11211701 11211567 ID=Msa0875130-mRNA-1:cds;Parent=Msa0875130-mRNA-1
chr6_1 three_prime_UTR 11211702 11212174 11211702 ID=Msa0875130-mRNA-1:three_prime_utr;Parent=Msa0875130-mRNA-1
Gene Sequence

>Msa0875130

ATGTCTCTAACCATTAAGTTACAATTAGTTTCTCATCTTAACATCAACAAAAACCATGCAAACAAATTAATCAAAAACAAAAACAACACTTTTGGTAACACTTTAAAGTTTCTTCCAAAACCCACTTTTGGTAACAATCCATTAACTGTTACTAAAAAGTATAATAGTAATAAAGTTAAGAGAAGAATGCAAGGAAATATCATGATCAAAAGCTCTTTGATAGAACCAGATGGGGGTGTATTAGTAGATCTTATGGTGCCTGAAAATGAAAGAGATTCTAAGGTAATTGAAGCTAAGTCACTTCCTAATGTGAAACTAACAAAAGTTGATTATGAATGGGTGCATGTTATTGGTGAAGGTTGGGCTAGTCCTTTGAAAGGTTTCATGAGGGAAAATGAATATCTTCAAAGTTTGCATTTTAATTCACTTAGGTTGAAGGATGGTTCTTTTGTTAATATGTCACTTCCTATTGTTTTGTCTATTGATGATGAGACTAAAGAGAAAATTGGATCTTCTTCTAATGTTGGGTTGATTGGACCTGATGGTGATTGTGTTGGGATTCTTAGAAGCATTGAAATCTACAAGCATAACAAAGAAGAAAGAATAGCTAGAACCTGGGGAACAACTGCTCCAGGATTGCCTTATGTTGAGGAGGTCATTGCTCCAGCTGGAAATTGGCTTATCGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATACAATGACGGTCTTGATAACTACAGGCTATCTCCCAAGCAACTTCGGGAAGAATTTGATAGGCGTAAAGCTGATGCAGTTTTTGCCTTTCAGTTAAGAAATCCTGTGCATAACGGTCATGCCTTGTTAATGAATGATACTCGTCAACGTCTATTAGACATGGGTTACAAAAATCCGATTTTATTGCTTCACCCTCTTGGAGGTTTCACAAAGGTTGACGACGTTCCGTTAGATGTCAGGATGGAGCAACATAGCAAGGTCCTAGAAGATGGAGTTCTTGATCCTGAGACAACCATAGTTTCTATATTTCCATCACCTATGCATTATGCAGGTCCAACTGAAGTTCAATGGCATGCGAAGGCACGGATAAATGCAGGCGCCAACTTCTATATTGTTGGCCGCGATCCCGCTGGTATGGGTCATCCAACTGAGAAACGGGACTTGTATGACCCTGATCATGGAAAAAAGGTGCTTAGCATGGCTCCTGGTCTTGAGAAGCTTAACATTTTGCCATTCAGGGTTGCAGCTTATGACACTAAGGTAAACAAGATGGCATTTTTCGACCCTAGCCGTGCTAAAGATTTCCTCTTTATATCTGGAACCAAGATGAGGTCTTATGCAAAAAGTGGAGAGAATCCACCAGATGGATTTATGTGCCCAAGTGGATGGAAAGTTCTTGTCAATTATTATGAAAGTTTGCAGACAGAAGAAGCATCACAACAGCCTGTGTTATCTTCTTAG

Protein sequence

>Msa0875130

MSLTIKLQLVSHLNINKNHANKLIKNKNNTFGNTLKFLPKPTFGNNPLTVTKKYNSNKVKRRMQGNIMIKSSLIEPDGGVLVDLMVPENERDSKVIEAKSLPNVKLTKVDYEWVHVIGEGWASPLKGFMRENEYLQSLHFNSLRLKDGSFVNMSLPIVLSIDDETKEKIGSSSNVGLIGPDGDCVGILRSIEIYKHNKEERIARTWGTTAPGLPYVEEVIAPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLREEFDRRKADAVFAFQLRNPVHNGHALLMNDTRQRLLDMGYKNPILLLHPLGGFTKVDDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVAAYDTKVNKMAFFDPSRAKDFLFISGTKMRSYAKSGENPPDGFMCPSGWKVLVNYYESLQTEEASQQPVLSS*