AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019680 MtrunA17_Chr7g0235571 97.209 215 6 0 1 215 376 590 2.31e-153 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019680 AT3G07180.3 67.757 214 67 1 1 214 380 591 1.91e-96 293
Msa1019680 AT3G07180.1 67.757 214 67 1 1 214 388 599 3.16e-96 292
Msa1019680 AT3G07180.2 68.041 97 31 0 118 214 358 454 2.68e-36 132

Find 95 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATCCTTTATACAGCTTT+GGG 0.223453 7_1:+41702399 None:intergenic
TGATCTTATTGTAGGGATTT+TGG 0.238739 7_1:-41704106 Msa1019680:five_prime_UTR
CCAAATCCTTTATACAGCTT+TGG 0.289879 7_1:+41702398 None:intergenic
ATGATTATAATGGATGAAAT+TGG 0.297476 7_1:-41699760 Msa1019680:CDS
CCAAAGCTGTATAAAGGATT+TGG 0.306450 7_1:-41702398 Msa1019680:CDS
ATAAAATTAGAAATGGCATT+TGG 0.318636 7_1:+41698232 None:intergenic
AATGGATGAAATTGGAAAAC+AGG 0.337157 7_1:-41699752 Msa1019680:intron
AAAGATACAAGCAAGAAAAT+AGG 0.352639 7_1:-41698365 Msa1019680:CDS
GGGCAGTTACGGCAACTTCT+TGG 0.359643 7_1:-41701990 Msa1019680:CDS
ATTACCAAGGATGATTATAA+TGG 0.365327 7_1:-41699770 Msa1019680:CDS
GACCTTTATGTTGGTGAGTC+TGG 0.368121 7_1:-41701954 Msa1019680:CDS
TAAAATTAGAAATGGCATTT+GGG 0.368826 7_1:+41698233 None:intergenic
GCTTGGATCTCTTTCTAGAT+TGG 0.374672 7_1:-41699888 Msa1019680:intron
GGATGCAAAGCCTCAATAAC+AGG 0.383148 7_1:+41704067 None:intergenic
ACAGGTTGAAGCTAGTTTCC+AGG 0.386519 7_1:-41698284 Msa1019680:three_prime_UTR
CTTTCATGTGCCACAACGCT+TGG 0.397509 7_1:-41699905 Msa1019680:CDS
GTAGTGCTGACACGGTCCTT+AGG 0.401407 7_1:-41698198 Msa1019680:three_prime_UTR
CAGACATATGATTTCTCCTC+AGG 0.412813 7_1:-41702359 Msa1019680:intron
GCTGACTGTGTGTAGGGAAT+TGG 0.420206 7_1:-41699963 Msa1019680:intron
ATTCTCTTATCGCAGCTAGA+AGG 0.425827 7_1:+41698391 None:intergenic
GACATTGATGCGGCGGCTCT+TGG 0.429053 7_1:-41698152 Msa1019680:three_prime_UTR
TATAAAGGATTTGGAAAGTA+AGG 0.431090 7_1:-41702389 Msa1019680:CDS
AAGTTCTCATGGGGCAGTTA+CGG 0.431363 7_1:-41702001 Msa1019680:CDS
AGAAGGATATGCATTGTAAC+TGG 0.441608 7_1:+41698408 None:intergenic
ATGGATGATGATCTTATTGT+AGG 0.443136 7_1:-41704114 Msa1019680:five_prime_UTR
TCAACAGTGACATCGGCTAT+AGG 0.447116 7_1:+41704046 None:intergenic
TAGTGCTGACACGGTCCTTA+GGG 0.455119 7_1:-41698197 Msa1019680:three_prime_UTR
TCATCCATTATAATCATCCT+TGG 0.457874 7_1:+41699766 None:intergenic
TAGGAAGTACTTGGCTTGGA+AGG 0.460900 7_1:-41698346 Msa1019680:CDS
CTCCATTCGCAAGCTCTAGT+TGG 0.461662 7_1:+41702586 None:intergenic
CGATGTCACTGTTGAAAGCC+AGG 0.476162 7_1:-41704038 Msa1019680:intron
AGACTTGAAACCTGTTATTG+AGG 0.481362 7_1:-41704077 Msa1019680:five_prime_UTR
TTCTAGCTGCGATAAGAGAA+TGG 0.489632 7_1:-41698389 Msa1019680:CDS
CAACCACCTTTCAAGTGAAA+GGG 0.490455 7_1:+41698104 None:intergenic
AAAATAGGAAGTACTTGGCT+TGG 0.491213 7_1:-41698350 Msa1019680:CDS
GGAGAGATCTCTAAGACTAA+TGG 0.491895 7_1:-41702567 Msa1019680:five_prime_UTR
CTCACAAGACCTCGACTACC+TGG 0.492055 7_1:+41698266 None:intergenic
GCTCAAAATAATGCAACTGT+TGG 0.492447 7_1:-41699204 Msa1019680:CDS
TGTGGGGAGGTGTTGTGGTA+TGG 0.493358 7_1:-41702426 Msa1019680:CDS
TCTTTCGCTCCCTAGGAGAA+TGG 0.497516 7_1:+41701926 None:intergenic
TGAAACCTCTTTCGCTCCCT+AGG 0.497597 7_1:+41701919 None:intergenic
TCTGGCACATCCATTCTCCT+AGG 0.497958 7_1:-41701936 Msa1019680:CDS
CAGGAAGAAAATGAAGACTT+TGG 0.498770 7_1:+41703917 None:intergenic
AATTATCGATCAACAGTGAC+AGG 0.499321 7_1:-41698302 Msa1019680:three_prime_UTR
TGCCAGACTCACCAACATAA+AGG 0.499380 7_1:+41701952 None:intergenic
GATACTTCAGTTGCAGCTGG+TGG 0.501022 7_1:-41703436 Msa1019680:five_prime_UTR
GCGAAAGAGGTTTCACAGAA+TGG 0.508016 7_1:-41701911 Msa1019680:intron
TTAGATACTTCAGTTGCAGC+TGG 0.514652 7_1:-41703439 Msa1019680:five_prime_UTR
GCAGATGTGGGGAGGTGTTG+TGG 0.516431 7_1:-41702431 Msa1019680:intron
CATTGTTACGAGCAAATTGA+GGG 0.522170 7_1:-41698078 Msa1019680:three_prime_UTR
ACAACCACCTTTCAAGTGAA+AGG 0.527200 7_1:+41698103 None:intergenic
GGAATGTATGATGCTTCTGC+TGG 0.530664 7_1:-41699183 Msa1019680:intron
TAGCTGATGGACATAATTGA+AGG 0.531966 7_1:+41699005 None:intergenic
CTCAAATGAATAGTAGCTGA+TGG 0.534091 7_1:+41698992 None:intergenic
TTCCCCTTTCACTTGAAAGG+TGG 0.535543 7_1:-41698107 Msa1019680:three_prime_UTR
GCAAGAAAATAGGAAGTACT+TGG 0.537006 7_1:-41698355 Msa1019680:CDS
CAAGCGTTGTGGCACATGAA+AGG 0.543032 7_1:+41699906 None:intergenic
CCATTGTTACGAGCAAATTG+AGG 0.548440 7_1:-41698079 Msa1019680:three_prime_UTR
GGAGAAATCATATGTCTGAC+TGG 0.549427 7_1:+41702364 None:intergenic
TAAGTTTGAAGTCTGTGTGA+TGG 0.550235 7_1:-41704133 Msa1019680:five_prime_UTR
GATCTTGAGTACTGAATATG+TGG 0.556061 7_1:+41703876 None:intergenic
ATTCTCCTAGGGAGCGAAAG+AGG 0.562499 7_1:-41701924 Msa1019680:CDS
ACAATAGAACATACAAAGAA+CGG 0.567002 7_1:+41703851 None:intergenic
ATACTTCAGTTGCAGCTGGT+GGG 0.567698 7_1:-41703435 Msa1019680:five_prime_UTR
AAGTCAGATGACCTTTATGT+TGG 0.569066 7_1:-41701963 Msa1019680:CDS
AGAGGACACTCCTTTGCAGA+TGG 0.569090 7_1:+41702609 None:intergenic
TGGATGATGATCTTATTGTA+GGG 0.575734 7_1:-41704113 Msa1019680:five_prime_UTR
GTCAAAAGTATTGCAACTTG+TGG 0.578476 7_1:-41703410 Msa1019680:five_prime_UTR
TGTCACTGTCATTCTAAACA+AGG 0.581077 7_1:+41697957 None:intergenic
CTCCAACTAGAGCTTGCGAA+TGG 0.584338 7_1:-41702588 Msa1019680:five_prime_UTR
AGGAAGTACTTGGCTTGGAA+GGG 0.584866 7_1:-41698345 Msa1019680:CDS
AAATCCTTTATACAGCTTTG+GGG 0.588176 7_1:+41702400 None:intergenic
CAGATATATTCCATCTGCAA+AGG 0.589184 7_1:-41702619 Msa1019680:five_prime_UTR
ACGTATACTAGTTGTCCCTA+AGG 0.591985 7_1:+41698182 None:intergenic
AATCCTTTATACAGCTTTGG+GGG 0.592811 7_1:+41702401 None:intergenic
CTGGCACATCCATTCTCCTA+GGG 0.593812 7_1:-41701935 Msa1019680:CDS
CCTCAATTTGCTCGTAACAA+TGG 0.601661 7_1:+41698079 None:intergenic
TCTTCCTGGGATGACGAGCA+TGG 0.604602 7_1:-41703902 Msa1019680:five_prime_UTR
AGCTAGTTTCCAGGTAGTCG+AGG 0.606107 7_1:-41698275 Msa1019680:three_prime_UTR
CTGGCTTTCAACAGTGACAT+CGG 0.614755 7_1:+41704039 None:intergenic
CTTCAGTTGCAGCTGGTGGG+AGG 0.616847 7_1:-41703432 Msa1019680:five_prime_UTR
AAATGACAGTAGTGCTGACA+CGG 0.617382 7_1:-41698206 Msa1019680:three_prime_UTR
AACCACCTTTCAAGTGAAAG+GGG 0.617954 7_1:+41698105 None:intergenic
TTCGCAAGCTCTAGTTGGAG+AGG 0.620379 7_1:+41702591 None:intergenic
AACAGGTGAATTCTAATGAG+TGG 0.622364 7_1:-41703465 Msa1019680:intron
TGCAGGTACAATCATTACCA+AGG 0.629331 7_1:-41699783 Msa1019680:intron
AAGGCAATCAAGATCTCTTG+CGG 0.631831 7_1:-41699045 Msa1019680:CDS
AGAAAGAGATCCAAGCGTTG+TGG 0.636450 7_1:+41699895 None:intergenic
GGGAATTGGATGTCTTGTCA+AGG 0.639791 7_1:-41699949 Msa1019680:CDS
ATACTATTGCAGATGTGGGG+AGG 0.641438 7_1:-41702439 Msa1019680:intron
GCAACAAGACATTGATGCGG+CGG 0.653634 7_1:-41698159 Msa1019680:three_prime_UTR
GCAATCAAGATCTCTTGCGG+AGG 0.670297 7_1:-41699042 Msa1019680:CDS
TCTATACTATTGCAGATGTG+GGG 0.681956 7_1:-41702442 Msa1019680:intron
AAAATGAAGACTTTGGTGTG+TGG 0.709097 7_1:+41703924 None:intergenic
CGTGCAACAAGACATTGATG+CGG 0.753447 7_1:-41698162 Msa1019680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTACTTATTTTTATTTTTT+TGG - chr7_1:41699617-41699636 Msa1019680:intron 10.0%
!! GATTTACTTTAAATAAATAA+TGG - chr7_1:41699908-41699927 Msa1019680:CDS 10.0%
!!! AATTATTATTTTTTAAACAC+AGG - chr7_1:41700691-41700710 Msa1019680:intron 10.0%
!! AAGATATAAATATAACAATT+CGG - chr7_1:41700955-41700974 Msa1019680:intron 10.0%
!! TAATTAAAATATTCAATTAG+CGG - chr7_1:41701150-41701169 Msa1019680:intron 10.0%
!!! TTTTTTTTTTAAATGTTGTT+GGG + chr7_1:41701785-41701804 None:intergenic 10.0%
!!! TTTTTTTTTTTAAATGTTGT+TGG + chr7_1:41701786-41701805 None:intergenic 10.0%
!! TTTATTGTTATGAATAATAT+AGG + chr7_1:41701811-41701830 None:intergenic 10.0%
!! TCTAAAAAAAATTATTATGA+TGG + chr7_1:41702628-41702647 None:intergenic 10.0%
!!! ATTTTTTATATCAATTAATC+AGG + chr7_1:41702793-41702812 None:intergenic 10.0%
!! AAAATCTTATCAAAATAAAT+AGG + chr7_1:41703352-41703371 None:intergenic 10.0%
!! ATTATTAAGTATTAATGAAT+TGG - chr7_1:41703402-41703421 Msa1019680:intron 10.0%
!!! ATTTTCAATAAAATTAGAAA+TGG + chr7_1:41703900-41703919 None:intergenic 10.0%
!! ATAAGTATAACATAGTTAAA+AGG + chr7_1:41699481-41699500 None:intergenic 15.0%
!!! TTTTACTTTTTCTCATTAAT+TGG - chr7_1:41699786-41699805 Msa1019680:intron 15.0%
!! ATATGTGAGTATAAAAATAA+TGG + chr7_1:41700314-41700333 None:intergenic 15.0%
!! TTGCTAAATATATATCTTTA+AGG - chr7_1:41700345-41700364 Msa1019680:intron 15.0%
!! TGCTAAATATATATCTTTAA+GGG - chr7_1:41700346-41700365 Msa1019680:intron 15.0%
!!! TATATTTTTTATATTCCACA+TGG - chr7_1:41700395-41700414 Msa1019680:intron 15.0%
!! ATCCTATTCTATTATTATTT+AGG + chr7_1:41700428-41700447 None:intergenic 15.0%
!! ATACAATAACATTTAATGTA+GGG - chr7_1:41700797-41700816 Msa1019680:intron 15.0%
!!! AATTTTGTAATACAATTATG+TGG - chr7_1:41701647-41701666 Msa1019680:intron 15.0%
!!! AAATGAAACAATTTTCAATT+AGG + chr7_1:41701759-41701778 None:intergenic 15.0%
!!! CTTTGAAAATTATATAGAAT+TGG - chr7_1:41701840-41701859 Msa1019680:intron 15.0%
!!! AAAAAACTATTCTTTCATTT+TGG + chr7_1:41701958-41701977 None:intergenic 15.0%
!!! TGTTTTAAATGTTTATTGTT+GGG - chr7_1:41702290-41702309 Msa1019680:intron 15.0%
!!! ATGATATTCATTTTCTAATT+TGG - chr7_1:41702693-41702712 Msa1019680:intron 15.0%
!!! TGATATTCATTTTCTAATTT+GGG - chr7_1:41702694-41702713 Msa1019680:intron 15.0%
!! GAATATATTTCTTGTATTTA+TGG + chr7_1:41703202-41703221 None:intergenic 15.0%
!! TTATGAATATCAAAATGTAA+TGG + chr7_1:41703284-41703303 None:intergenic 15.0%
!! TTTCACATATACAACAAAAA+AGG + chr7_1:41698527-41698546 None:intergenic 20.0%
!! AAATATGAAAAGGAAAGAAA+AGG + chr7_1:41698563-41698582 None:intergenic 20.0%
!!! TCAGTTTATATTTTTAGCAT+CGG - chr7_1:41698793-41698812 Msa1019680:intron 20.0%
!!! ATAATGGATATACTTTTGTT+TGG - chr7_1:41699924-41699943 Msa1019680:CDS 20.0%
!! TGTATAACTGTAGAAATAAA+TGG + chr7_1:41700013-41700032 None:intergenic 20.0%
!! TCATATGTTTACACAATAAT+GGG - chr7_1:41700276-41700295 Msa1019680:intron 20.0%
!! GCTAAATATATATCTTTAAG+GGG - chr7_1:41700347-41700366 Msa1019680:intron 20.0%
!! GTCCTAAATAATAATAGAAT+AGG - chr7_1:41700423-41700442 Msa1019680:intron 20.0%
!! GATACAATAACATTTAATGT+AGG - chr7_1:41700796-41700815 Msa1019680:intron 20.0%
!! AAAAATCGAATTCTTTAACT+AGG + chr7_1:41700834-41700853 None:intergenic 20.0%
!! TTCATGAACTTTGAATTATT+TGG - chr7_1:41701096-41701115 Msa1019680:intron 20.0%
!! CATATTTATTACTACTAAGT+TGG - chr7_1:41701242-41701261 Msa1019680:intron 20.0%
!! ATTATGTGGTACAAAAATTA+CGG + chr7_1:41701390-41701409 None:intergenic 20.0%
!!! GATTTTGTAATACAATTATG+TGG + chr7_1:41701404-41701423 None:intergenic 20.0%
!!! TTAATTTTGATGTAACTCAT+TGG + chr7_1:41701502-41701521 None:intergenic 20.0%
!! CAACAAAATTTGACATTAAT+TGG + chr7_1:41701589-41701608 None:intergenic 20.0%
!!! TTATTTTGTTTTTTCAGCAA+AGG - chr7_1:41701694-41701713 Msa1019680:intron 20.0%
!! TTCATGAAGTTATCAAATAA+GGG + chr7_1:41701876-41701895 None:intergenic 20.0%
!! ATTCATGAAGTTATCAAATA+AGG + chr7_1:41701877-41701896 None:intergenic 20.0%
!! GTTTAAATGATTATGTTTCA+TGG + chr7_1:41702044-41702063 None:intergenic 20.0%
!! ACTTCAAAAATAATTCTTGT+GGG - chr7_1:41702137-41702156 Msa1019680:intron 20.0%
!!! CTGTTTTAAATGTTTATTGT+TGG - chr7_1:41702289-41702308 Msa1019680:intron 20.0%
!!! GTTTTAAATGTTTATTGTTG+GGG - chr7_1:41702291-41702310 Msa1019680:intron 20.0%
!!! ATGATTATAATGGATGAAAT+TGG - chr7_1:41702362-41702381 Msa1019680:CDS 20.0%
!!! ATTTTAGTTAAGAGTTTGTT+AGG - chr7_1:41702444-41702463 Msa1019680:intron 20.0%
!!! GTTACTAATAGTATTGAATA+TGG - chr7_1:41702599-41702618 Msa1019680:five_prime_UTR 20.0%
!! AAAAGATAAACATCATAAGT+TGG + chr7_1:41703042-41703061 None:intergenic 20.0%
!! TATATTCTTGCTTATATTGA+TGG - chr7_1:41703215-41703234 Msa1019680:intron 20.0%
!! TAAAATTAGAAATGGCATTT+GGG + chr7_1:41703892-41703911 None:intergenic 20.0%
!! ATAAAATTAGAAATGGCATT+TGG + chr7_1:41703893-41703912 None:intergenic 20.0%
! ACAATAGAACATACAAAGAA+CGG + chr7_1:41698274-41698293 None:intergenic 25.0%
!! TGTTGCAAACTTTTATCAAT+TGG - chr7_1:41698360-41698379 Msa1019680:CDS 25.0%
!! ACTTTTATCAATTGGATAGT+TGG - chr7_1:41698368-41698387 Msa1019680:CDS 25.0%
! ACGTCAAATGAAATATGAAA+AGG + chr7_1:41698573-41698592 None:intergenic 25.0%
! TGAATGTTTAAATCTTGAAC+AGG - chr7_1:41698640-41698659 Msa1019680:intron 25.0%
! AGCATAATCAGAAATTTAGA+TGG + chr7_1:41699023-41699042 None:intergenic 25.0%
! ATCTAAATTTCTGATTATGC+TGG - chr7_1:41699022-41699041 Msa1019680:CDS 25.0%
!!! TCTAGAATAAATTTTGCTCT+TGG - chr7_1:41699321-41699340 Msa1019680:intron 25.0%
!! CTAGAATAAATTTTGCTCTT+GGG - chr7_1:41699322-41699341 Msa1019680:intron 25.0%
!!! AATAAGTACAGAAGTTTTGA+AGG + chr7_1:41699607-41699626 None:intergenic 25.0%
! TATAAAGGATTTGGAAAGTA+AGG - chr7_1:41699733-41699752 Msa1019680:intron 25.0%
! TTAATGACATCAACAATAGA+GGG + chr7_1:41700042-41700061 None:intergenic 25.0%
! ATTAATGACATCAACAATAG+AGG + chr7_1:41700043-41700062 None:intergenic 25.0%
! CATCATGATTTCAAAACTAT+AGG + chr7_1:41700250-41700269 None:intergenic 25.0%
! GTCATATGTTTACACAATAA+TGG - chr7_1:41700275-41700294 Msa1019680:intron 25.0%
!! GGCATATTTTTCATTTAACT+CGG - chr7_1:41700736-41700755 Msa1019680:intron 25.0%
!!! TCTGTTTTTTCATGAAAGTT+GGG + chr7_1:41700778-41700797 None:intergenic 25.0%
!!! ATCTGTTTTTTCATGAAAGT+TGG + chr7_1:41700779-41700798 None:intergenic 25.0%
! AAAGATTTGTGATTATTGAC+GGG + chr7_1:41700917-41700936 None:intergenic 25.0%
! GAAAGATTTGTGATTATTGA+CGG + chr7_1:41700918-41700937 None:intergenic 25.0%
! AGTTATAATTCAAGTCTTAG+AGG - chr7_1:41700982-41701001 Msa1019680:intron 25.0%
!! TTTGTTTCCTTGATTTTTGT+TGG - chr7_1:41701015-41701034 Msa1019680:intron 25.0%
! ATAACAAAATAATGTGGACA+GGG + chr7_1:41701180-41701199 None:intergenic 25.0%
! GCAATATATATATATCACCA+TGG - chr7_1:41701340-41701359 Msa1019680:intron 25.0%
! ATTTATTAAGTTTGACACCA+TGG + chr7_1:41701360-41701379 None:intergenic 25.0%
!!! GATAATAGCTTTAAATCCAA+AGG + chr7_1:41701429-41701448 None:intergenic 25.0%
!! GATAATAGTTTTCAATCCAA+CGG - chr7_1:41701622-41701641 Msa1019680:intron 25.0%
!!! TATTGTTTAATTTGACACCA+TGG - chr7_1:41701722-41701741 Msa1019680:intron 25.0%
!!! TATCGACAGTTTTATACATT+TGG + chr7_1:41702001-41702020 None:intergenic 25.0%
! ATAATCATTTAAACCATGCT+GGG - chr7_1:41702050-41702069 Msa1019680:intron 25.0%
! CACTTCAAAAATAATTCTTG+TGG - chr7_1:41702136-41702155 Msa1019680:intron 25.0%
! ATTACCAAGGATGATTATAA+TGG - chr7_1:41702352-41702371 Msa1019680:intron 25.0%
! ATGAATATAACAATTCCGTT+TGG - chr7_1:41702749-41702768 Msa1019680:intron 25.0%
! TCGTTTACTAACTAAATATG+AGG + chr7_1:41702822-41702841 None:intergenic 25.0%
! CATAATTGAAGGATGAAAAA+AGG + chr7_1:41703109-41703128 None:intergenic 25.0%
!!! TCAAAATGTAATGGATAATC+TGG + chr7_1:41703275-41703294 None:intergenic 25.0%
!! AAATAGGAATTACGTTTTCA+TGG + chr7_1:41703336-41703355 None:intergenic 25.0%
! AGAATAAATACAAGGCTAAA+AGG + chr7_1:41703481-41703500 None:intergenic 25.0%
! ACAACGAAAGAATAAATACA+AGG + chr7_1:41703489-41703508 None:intergenic 25.0%
!! TCTGAAATTGTACCAATATT+AGG - chr7_1:41703594-41703613 Msa1019680:intron 25.0%
! AATTCTCATGAACCTAATAT+TGG + chr7_1:41703609-41703628 None:intergenic 25.0%
! AAAGATACAAGCAAGAAAAT+AGG - chr7_1:41703757-41703776 Msa1019680:intron 25.0%
ATGGATGATGATCTTATTGT+AGG - chr7_1:41698008-41698027 Msa1019680:three_prime_UTR 30.0%
TGGATGATGATCTTATTGTA+GGG - chr7_1:41698009-41698028 Msa1019680:three_prime_UTR 30.0%
! TGATCTTATTGTAGGGATTT+TGG - chr7_1:41698016-41698035 Msa1019680:three_prime_UTR 30.0%
! ATTGCTCTTATTTGATTGTC+AGG - chr7_1:41698168-41698187 Msa1019680:three_prime_UTR 30.0%
! AAAGTCTTCATTTTCTTCCT+GGG - chr7_1:41698207-41698226 Msa1019680:three_prime_UTR 30.0%
ACATCACAAGATAAGATACA+TGG + chr7_1:41698343-41698362 None:intergenic 30.0%
AAAAAAGGACTCGCATAAAT+TGG + chr7_1:41698512-41698531 None:intergenic 30.0%
!!! ACTGCTTAAAGACTAGTTTT+AGG - chr7_1:41699250-41699269 Msa1019680:intron 30.0%
CATCTGCAATAGTATAGAAT+AGG + chr7_1:41699678-41699697 None:intergenic 30.0%
ATTCTATACTATTGCAGATG+TGG - chr7_1:41699678-41699697 Msa1019680:intron 30.0%
TTCTATACTATTGCAGATGT+GGG - chr7_1:41699679-41699698 Msa1019680:intron 30.0%
AAATCCTTTATACAGCTTTG+GGG + chr7_1:41699725-41699744 None:intergenic 30.0%
CAAATCCTTTATACAGCTTT+GGG + chr7_1:41699726-41699745 None:intergenic 30.0%
ATGAGAAAAAGTAAAACCTG+AGG + chr7_1:41699782-41699801 None:intergenic 30.0%
!! ATGGATATACTTTTGTTTGG+AGG - chr7_1:41699927-41699946 Msa1019680:CDS 30.0%
TAGCATTCATATACTGAAAC+AGG - chr7_1:41700080-41700099 Msa1019680:intron 30.0%
!!! AAGCTTTTTGAAGTTCTCAT+GGG - chr7_1:41700111-41700130 Msa1019680:intron 30.0%
!!! TAGTTTTGAAATCATGATGC+TGG - chr7_1:41700251-41700270 Msa1019680:intron 30.0%
ATGGAATACAAAGCTTGATT+GGG - chr7_1:41700480-41700499 Msa1019680:intron 30.0%
TCATGAAAGTTGGGATAAAA+AGG + chr7_1:41700769-41700788 None:intergenic 30.0%
AAGATTTGTGATTATTGACG+GGG + chr7_1:41700916-41700935 None:intergenic 30.0%
GTAAGTACCAACAAAAATCA+AGG + chr7_1:41701025-41701044 None:intergenic 30.0%
GATAACAAAATAATGTGGAC+AGG + chr7_1:41701181-41701200 None:intergenic 30.0%
ACTGGGATAACAAAATAATG+TGG + chr7_1:41701186-41701205 None:intergenic 30.0%
!! TTATTTTGTTATCCCAGTTC+TGG - chr7_1:41701188-41701207 Msa1019680:intron 30.0%
!! TATTTTGTTATCCCAGTTCT+GGG - chr7_1:41701189-41701208 Msa1019680:intron 30.0%
TGTATTACAAAATCCACCTT+TGG - chr7_1:41701410-41701429 Msa1019680:intron 30.0%
!! AATAGCTTTAAATCCAAAGG+TGG + chr7_1:41701426-41701445 None:intergenic 30.0%
TGTATTACAAAATTCACCGT+TGG + chr7_1:41701641-41701660 None:intergenic 30.0%
CATAATCATTTAAACCATGC+TGG - chr7_1:41702049-41702068 Msa1019680:intron 30.0%
! GTTTAACTCTTATTTCTTGC+AGG - chr7_1:41702322-41702341 Msa1019680:intron 30.0%
TCATCCATTATAATCATCCT+TGG + chr7_1:41702359-41702378 None:intergenic 30.0%
AATGGATGAAATTGGAAAAC+AGG - chr7_1:41702370-41702389 Msa1019680:CDS 30.0%
AGGAATTAGTTAGTTGCATA+TGG - chr7_1:41702464-41702483 Msa1019680:intron 30.0%
!! TCCAATATAAGTGTTGGAAA+GGG + chr7_1:41702578-41702597 None:intergenic 30.0%
!! ATCCAATATAAGTGTTGGAA+AGG + chr7_1:41702579-41702598 None:intergenic 30.0%
GTAACATCCAATATAAGTGT+TGG + chr7_1:41702584-41702603 None:intergenic 30.0%
ATGTAATTGTACACACCAAA+CGG + chr7_1:41702767-41702786 None:intergenic 30.0%
TTAGCGATAAGTCTCAAAAA+AGG + chr7_1:41702969-41702988 None:intergenic 30.0%
! TTTTCTTGTCAGTATCATCA+AGG - chr7_1:41703058-41703077 Msa1019680:intron 30.0%
!! GCATTGTTTTGCTATCTATT+CGG - chr7_1:41703152-41703171 Msa1019680:intron 30.0%
! TCCATCATGACATCTTTTAT+GGG + chr7_1:41703441-41703460 None:intergenic 30.0%
! TTCCATCATGACATCTTTTA+TGG + chr7_1:41703442-41703461 None:intergenic 30.0%
! AAGATGTCATGATGGAAAAT+TGG - chr7_1:41703445-41703464 Msa1019680:five_prime_UTR 30.0%
CCATAAAAACAGAACTTACA+CGG + chr7_1:41703556-41703575 None:intergenic 30.0%
!!! GTTCTGTTTTTATGGACTTA+CGG - chr7_1:41703561-41703580 Msa1019680:intron 30.0%
ATTGTAACTGGCAGAAAAAA+TGG + chr7_1:41703705-41703724 None:intergenic 30.0%
! TAAGTTTGAAGTCTGTGTGA+TGG - chr7_1:41697989-41698008 Msa1019680:intron 35.0%
AGACTTGAAACCTGTTATTG+AGG - chr7_1:41698045-41698064 Msa1019680:three_prime_UTR 35.0%
GTCTTGCAACTTCTACAATT+AGG + chr7_1:41698118-41698137 None:intergenic 35.0%
! AAAATGAAGACTTTGGTGTG+TGG + chr7_1:41698201-41698220 None:intergenic 35.0%
CAGGAAGAAAATGAAGACTT+TGG + chr7_1:41698208-41698227 None:intergenic 35.0%
! CAAAGTCTTCATTTTCTTCC+TGG - chr7_1:41698206-41698225 Msa1019680:three_prime_UTR 35.0%
!! GATCTTGAGTACTGAATATG+TGG + chr7_1:41698249-41698268 None:intergenic 35.0%
GCTAATATGTCAGATGATCT+GGG + chr7_1:41698406-41698425 None:intergenic 35.0%
TGCTAATATGTCAGATGATC+TGG + chr7_1:41698407-41698426 None:intergenic 35.0%
AGATCATCTGACATATTAGC+AGG - chr7_1:41698406-41698425 Msa1019680:CDS 35.0%
TGTATGTGTCTCTGTTTCAT+TGG - chr7_1:41698485-41698504 Msa1019680:intron 35.0%
TCATTTGACGTCTCTTGTAA+TGG - chr7_1:41698582-41698601 Msa1019680:intron 35.0%
AACAGGTGAATTCTAATGAG+TGG - chr7_1:41698657-41698676 Msa1019680:intron 35.0%
!! GTCAAAAGTATTGCAACTTG+TGG - chr7_1:41698712-41698731 Msa1019680:intron 35.0%
AACTTTATCCAGAGATCACA+CGG + chr7_1:41698853-41698872 None:intergenic 35.0%
TGTGATTCTACAAAAGGACA+TGG + chr7_1:41698947-41698966 None:intergenic 35.0%
GTAGGATGTGATTCTACAAA+AGG + chr7_1:41698953-41698972 None:intergenic 35.0%
ACCCAAATTAGTTAAGCCTA+GGG + chr7_1:41699000-41699019 None:intergenic 35.0%
CTAACATCAGTATGGTTACT+TGG + chr7_1:41699054-41699073 None:intergenic 35.0%
TTAGACCTGTTCCTATAGTA+GGG - chr7_1:41699070-41699089 Msa1019680:intron 35.0%
AATGTCATACTCCAAAGAAG+TGG - chr7_1:41699119-41699138 Msa1019680:intron 35.0%
GATAAGATAACAGTAGTAGC+AGG - chr7_1:41699291-41699310 Msa1019680:intron 35.0%
TTCGTGAGAATCACAAAGAT+AGG + chr7_1:41699444-41699463 None:intergenic 35.0%
CAGATATATTCCATCTGCAA+AGG - chr7_1:41699503-41699522 Msa1019680:intron 35.0%
TTGAAGGTCAGAGAAATAAC+TGG + chr7_1:41699591-41699610 None:intergenic 35.0%
TCTTCGTAAGTTAACTGCTT+AGG + chr7_1:41699654-41699673 None:intergenic 35.0%
TCTATACTATTGCAGATGTG+GGG - chr7_1:41699680-41699699 Msa1019680:intron 35.0%
! AATCCTTTATACAGCTTTGG+GGG + chr7_1:41699724-41699743 None:intergenic 35.0%
CCAAATCCTTTATACAGCTT+TGG + chr7_1:41699727-41699746 None:intergenic 35.0%
CCAAAGCTGTATAAAGGATT+TGG - chr7_1:41699724-41699743 Msa1019680:intron 35.0%
ACAAAGTTGCTTCTCATTGT+TGG - chr7_1:41699836-41699855 Msa1019680:intron 35.0%
TCATTGTTGGATCAGTACTT+TGG - chr7_1:41699849-41699868 Msa1019680:intron 35.0%
GTTCCATGTATGATACACTT+AGG - chr7_1:41699880-41699899 Msa1019680:intron 35.0%
TGTCCTAAGTGTATCATACA+TGG + chr7_1:41699886-41699905 None:intergenic 35.0%
TGAGAACTTCAAAAAGCTTC+TGG + chr7_1:41700110-41700129 None:intergenic 35.0%
!!! GAAGCTTTTTGAAGTTCTCA+TGG - chr7_1:41700110-41700129 Msa1019680:intron 35.0%
!!! AGCTTTTTGAAGTTCTCATG+GGG - chr7_1:41700112-41700131 Msa1019680:intron 35.0%
AAGTCAGATGACCTTTATGT+TGG - chr7_1:41700159-41700178 Msa1019680:intron 35.0%
! TATTTAGGACACATTCCATG+TGG + chr7_1:41700413-41700432 None:intergenic 35.0%
CATGGAATACAAAGCTTGAT+TGG - chr7_1:41700479-41700498 Msa1019680:intron 35.0%
! ACGTCTGTTTTACAGTTTCA+GGG - chr7_1:41700659-41700678 Msa1019680:intron 35.0%
TATCTGTGTTCGGATTTAGA+AGG + chr7_1:41700861-41700880 None:intergenic 35.0%
!! ATTTTGTTATCCCAGTTCTG+GGG - chr7_1:41701190-41701209 Msa1019680:intron 35.0%
AAGTTGGAAGCAATTTAGAG+TGG - chr7_1:41701258-41701277 Msa1019680:intron 35.0%
CACAAAACAGCAGAAAATGT+AGG + chr7_1:41701319-41701338 None:intergenic 35.0%
ATGTGGTACAAAAATTACGG+AGG + chr7_1:41701387-41701406 None:intergenic 35.0%
ATGTGGTACAGAATTATCGT+AGG - chr7_1:41701664-41701683 Msa1019680:intron 35.0%
ATTAGGATCAATTGACACCA+TGG + chr7_1:41701742-41701761 None:intergenic 35.0%
ATCCATTAAAGTTACCGTTG+TGG - chr7_1:41702077-41702096 Msa1019680:intron 35.0%
TCCATTAAAGTTACCGTTGT+GGG - chr7_1:41702078-41702097 Msa1019680:intron 35.0%
AATGAATAACCATCCCACAA+CGG + chr7_1:41702094-41702113 None:intergenic 35.0%
TCCCTTTCCAACACTTATAT+TGG - chr7_1:41702574-41702593 Msa1019680:five_prime_UTR 35.0%
!! GATGTTTTCCTCTTGCTTTT+AGG - chr7_1:41702652-41702671 Msa1019680:intron 35.0%
TCTTCATACCTAAAAGCAAG+AGG + chr7_1:41702663-41702682 None:intergenic 35.0%
GCTCAAAATAATGCAACTGT+TGG - chr7_1:41702918-41702937 Msa1019680:intron 35.0%
TTAACTCGACGATGATTTAG+AGG - chr7_1:41703003-41703022 Msa1019680:intron 35.0%
! TAGCTGATGGACATAATTGA+AGG + chr7_1:41703120-41703139 None:intergenic 35.0%
CTCAAATGAATAGTAGCTGA+TGG + chr7_1:41703133-41703152 None:intergenic 35.0%
ATGGCAGAGAGAAAAGTTAA+AGG + chr7_1:41703183-41703202 None:intergenic 35.0%
GGATAATCTGGTCAATATGA+AGG + chr7_1:41703263-41703282 None:intergenic 35.0%
TTAATGAATTGGAAGAGCCA+TGG - chr7_1:41703413-41703432 Msa1019680:five_prime_UTR 35.0%
ACACGGTTGGCAAAAAAAAA+AGG + chr7_1:41703539-41703558 None:intergenic 35.0%
AAAAACAGAACTTACACGGT+TGG + chr7_1:41703552-41703571 None:intergenic 35.0%
!!! CCGTGTAAGTTCTGTTTTTA+TGG - chr7_1:41703553-41703572 Msa1019680:intron 35.0%
AGAAGGATATGCATTGTAAC+TGG + chr7_1:41703717-41703736 None:intergenic 35.0%
!! GCAAGAAAATAGGAAGTACT+TGG - chr7_1:41703767-41703786 Msa1019680:intron 35.0%
!! AAAATAGGAAGTACTTGGCT+TGG - chr7_1:41703772-41703791 Msa1019680:intron 35.0%
AATTATCGATCAACAGTGAC+AGG - chr7_1:41703820-41703839 Msa1019680:intron 35.0%
! TTTTTCCCCTTTCACTTGAA+AGG - chr7_1:41704012-41704031 Msa1019680:intron 35.0%
CATTGTTACGAGCAAATTGA+GGG - chr7_1:41704044-41704063 Msa1019680:five_prime_UTR 35.0%
TGTCATTCTAAACAAGGCTT+TGG + chr7_1:41704162-41704181 None:intergenic 35.0%
TGTCACTGTCATTCTAAACA+AGG + chr7_1:41704168-41704187 None:intergenic 35.0%
TACAATTAGGAGACTTCACC+TGG + chr7_1:41698105-41698124 None:intergenic 40.0%
GCAAGACTCATTGTATGCTT+TGG - chr7_1:41698131-41698150 Msa1019680:three_prime_UTR 40.0%
AATATGTCAGATGATCTGGG+TGG + chr7_1:41698403-41698422 None:intergenic 40.0%
CAGAGACACATACATAACTC+AGG + chr7_1:41698479-41698498 None:intergenic 40.0%
TTAGATACTTCAGTTGCAGC+TGG - chr7_1:41698683-41698702 Msa1019680:intron 40.0%
GTGTGATCTCTGGATAAAGT+TGG - chr7_1:41698852-41698871 Msa1019680:intron 40.0%
TATATAAACTGCAGCACCAC+TGG - chr7_1:41698875-41698894 Msa1019680:intron 40.0%
TGGAACCTATGAGGTACATT+GGG + chr7_1:41698927-41698946 None:intergenic 40.0%
ATGGAACCTATGAGGTACAT+TGG + chr7_1:41698928-41698947 None:intergenic 40.0%
AAAAGGACATGGAACCTATG+AGG + chr7_1:41698936-41698955 None:intergenic 40.0%
TGCCCTAGGCTTAACTAATT+TGG - chr7_1:41698995-41699014 Msa1019680:CDS 40.0%
GCCCTAGGCTTAACTAATTT+GGG - chr7_1:41698996-41699015 Msa1019680:CDS 40.0%
GACCCAAATTAGTTAAGCCT+AGG + chr7_1:41699001-41699020 None:intergenic 40.0%
GAACAGGTCTAACATCAGTA+TGG + chr7_1:41699062-41699081 None:intergenic 40.0%
GTTAGACCTGTTCCTATAGT+AGG - chr7_1:41699069-41699088 Msa1019680:intron 40.0%
ATCACAATCAGCATGATCTC+TGG + chr7_1:41699171-41699190 None:intergenic 40.0%
AGACAGACACAAACTACAAG+TGG + chr7_1:41699201-41699220 None:intergenic 40.0%
!! GGAGAGATCTCTAAGACTAA+TGG - chr7_1:41699555-41699574 Msa1019680:intron 40.0%
GGAGAAATCATATGTCTGAC+TGG + chr7_1:41699761-41699780 None:intergenic 40.0%
CAGACATATGATTTCTCCTC+AGG - chr7_1:41699763-41699782 Msa1019680:CDS 40.0%
GAATAGGATTAAGACCCACT+TGG - chr7_1:41700439-41700458 Msa1019680:intron 40.0%
ACAACTACCACTACTACCTT+AGG - chr7_1:41700508-41700527 Msa1019680:intron 40.0%
TTGACAACCTAAGGTAGTAG+TGG + chr7_1:41700518-41700537 None:intergenic 40.0%
! GTGCTACTATTGACAACCTA+AGG + chr7_1:41700527-41700546 None:intergenic 40.0%
GCTACTATTCCGTAACACAT+CGG + chr7_1:41700573-41700592 None:intergenic 40.0%
CTGGTTGAACATTATCAGAC+CGG - chr7_1:41700622-41700641 Msa1019680:intron 40.0%
AAACTGTAAAACAGACGTGC+GGG + chr7_1:41700657-41700676 None:intergenic 40.0%
GAAACTGTAAAACAGACGTG+CGG + chr7_1:41700658-41700677 None:intergenic 40.0%
! CACGTCTGTTTTACAGTTTC+AGG - chr7_1:41700658-41700677 Msa1019680:intron 40.0%
CAAAATAATGTGGACAGGGA+TGG + chr7_1:41701176-41701195 None:intergenic 40.0%
TTGTCAATCCCAAATAGCTG+CGG + chr7_1:41701222-41701241 None:intergenic 40.0%
!! TTAATGGATTCAACCCAGCA+TGG + chr7_1:41702066-41702085 None:intergenic 40.0%
TCCCACAACGGTAACTTTAA+TGG + chr7_1:41702082-41702101 None:intergenic 40.0%
TTAAAGTTACCGTTGTGGGA+TGG - chr7_1:41702082-41702101 Msa1019680:intron 40.0%
GCTTGGATCTCTTTCTAGAT+TGG - chr7_1:41702234-41702253 Msa1019680:intron 40.0%
AGATTGGTATGCTTATCGAC+TGG - chr7_1:41702250-41702269 Msa1019680:intron 40.0%
! GATTGGTATGCTTATCGACT+GGG - chr7_1:41702251-41702270 Msa1019680:intron 40.0%
TGCAGGTACAATCATTACCA+AGG - chr7_1:41702339-41702358 Msa1019680:intron 40.0%
ATTGAGAGAAAGTCTCGTAG+AGG + chr7_1:41702537-41702556 None:intergenic 40.0%
GGCAGCAAAATATTGAGGAA+AGG + chr7_1:41702859-41702878 None:intergenic 40.0%
TCGAAGGCAGCAAAATATTG+AGG + chr7_1:41702864-41702883 None:intergenic 40.0%
AAGGCAATCAAGATCTCTTG+CGG - chr7_1:41703077-41703096 Msa1019680:intron 40.0%
GCCCATAAAAGATGTCATGA+TGG - chr7_1:41703437-41703456 Msa1019680:five_prime_UTR 40.0%
TGGTACAATTTCAGAGCTAG+AGG + chr7_1:41703589-41703608 None:intergenic 40.0%
! CGTGAGATGCACAGTTTTTA+AGG - chr7_1:41703630-41703649 Msa1019680:intron 40.0%
AAAATGGCTGATAGCACACA+AGG + chr7_1:41703689-41703708 None:intergenic 40.0%
ATTCTCTTATCGCAGCTAGA+AGG + chr7_1:41703734-41703753 None:intergenic 40.0%
! TTCTAGCTGCGATAAGAGAA+TGG - chr7_1:41703733-41703752 Msa1019680:intron 40.0%
!! AAATGACAGTAGTGCTGACA+CGG - chr7_1:41703916-41703935 Msa1019680:five_prime_UTR 40.0%
ACGTATACTAGTTGTCCCTA+AGG + chr7_1:41703943-41703962 None:intergenic 40.0%
! AACCACCTTTCAAGTGAAAG+GGG + chr7_1:41704020-41704039 None:intergenic 40.0%
! CAACCACCTTTCAAGTGAAA+GGG + chr7_1:41704021-41704040 None:intergenic 40.0%
! ACAACCACCTTTCAAGTGAA+AGG + chr7_1:41704022-41704041 None:intergenic 40.0%
! CCTCAATTTGCTCGTAACAA+TGG + chr7_1:41704046-41704065 None:intergenic 40.0%
CCATTGTTACGAGCAAATTG+AGG - chr7_1:41704043-41704062 Msa1019680:five_prime_UTR 40.0%
! TAAACAAGGCTTTGGTGAAC+AGG + chr7_1:41704154-41704173 None:intergenic 40.0%
GGATGCAAAGCCTCAATAAC+AGG + chr7_1:41698058-41698077 None:intergenic 45.0%
! TCAACAGTGACATCGGCTAT+AGG + chr7_1:41698079-41698098 None:intergenic 45.0%
! CTGGCTTTCAACAGTGACAT+CGG + chr7_1:41698086-41698105 None:intergenic 45.0%
ATACTTCAGTTGCAGCTGGT+GGG - chr7_1:41698687-41698706 Msa1019680:intron 45.0%
CTAACAATCCGTGTGATCTC+TGG - chr7_1:41698842-41698861 Msa1019680:intron 45.0%
AGTCATGCCATGACATACAC+AGG + chr7_1:41698902-41698921 None:intergenic 45.0%
ACTCACCCAATGTACCTCAT+AGG - chr7_1:41698919-41698938 Msa1019680:intron 45.0%
! CCAGACACAAATGGTGATGT+AGG + chr7_1:41698971-41698990 None:intergenic 45.0%
CCTACATCACCATTTGTGTC+TGG - chr7_1:41698968-41698987 Msa1019680:intron 45.0%
CATGTCCCTACTATAGGAAC+AGG + chr7_1:41699078-41699097 None:intergenic 45.0%
CTGTTCCTATAGTAGGGACA+TGG - chr7_1:41699076-41699095 Msa1019680:intron 45.0%
AAGCTCCATGTCCCTACTAT+AGG + chr7_1:41699084-41699103 None:intergenic 45.0%
AATCTGCAGCACCACTTCTT+TGG + chr7_1:41699133-41699152 None:intergenic 45.0%
AGCAGTAGTCTTCCCAATGT+GGG + chr7_1:41699236-41699255 None:intergenic 45.0%
AAGCAGTAGTCTTCCCAATG+TGG + chr7_1:41699237-41699256 None:intergenic 45.0%
TTGTGATTCTCACGAAGTGC+TGG - chr7_1:41699448-41699467 Msa1019680:intron 45.0%
ATACTATTGCAGATGTGGGG+AGG - chr7_1:41699683-41699702 Msa1019680:intron 45.0%
GAACCCCCAAAGCTGTATAA+AGG - chr7_1:41699718-41699737 Msa1019680:intron 45.0%
AAGTTCTCATGGGGCAGTTA+CGG - chr7_1:41700121-41700140 Msa1019680:intron 45.0%
! GACCTTTATGTTGGTGAGTC+TGG - chr7_1:41700168-41700187 Msa1019680:intron 45.0%
TGCCAGACTCACCAACATAA+AGG + chr7_1:41700173-41700192 None:intergenic 45.0%
GCGAAAGAGGTTTCACAGAA+TGG - chr7_1:41700211-41700230 Msa1019680:intron 45.0%
TAAGACCCACTTGGAACACA+TGG - chr7_1:41700448-41700467 Msa1019680:intron 45.0%
AAGACCCACTTGGAACACAT+GGG - chr7_1:41700449-41700468 Msa1019680:intron 45.0%
AGGTTGTCAATAGTAGCACC+AGG - chr7_1:41700528-41700547 Msa1019680:intron 45.0%
AGGATCACTCCGATGTGTTA+CGG - chr7_1:41700561-41700580 Msa1019680:intron 45.0%
AAATATGCCACGTGACCCAA+CGG + chr7_1:41700725-41700744 None:intergenic 45.0%
GGGAATTGGATGTCTTGTCA+AGG - chr7_1:41702173-41702192 Msa1019680:intron 45.0%
! AGAAAGAGATCCAAGCGTTG+TGG + chr7_1:41702230-41702249 None:intergenic 45.0%
! ATATTTTGCTGCCTTCGAGC+AGG - chr7_1:41702866-41702885 Msa1019680:intron 45.0%
TGAAAACTTCACCTGCTCGA+AGG + chr7_1:41702880-41702899 None:intergenic 45.0%
! GCAGGTGAAGTTTTCACTTG+AGG - chr7_1:41702884-41702903 Msa1019680:intron 45.0%
GGAATGTATGATGCTTCTGC+TGG - chr7_1:41702939-41702958 Msa1019680:intron 45.0%
! GACATCTTTTATGGGCACCA+TGG + chr7_1:41703433-41703452 None:intergenic 45.0%
!! TAGGAAGTACTTGGCTTGGA+AGG - chr7_1:41703776-41703795 Msa1019680:intron 45.0%
!! AGGAAGTACTTGGCTTGGAA+GGG - chr7_1:41703777-41703796 Msa1019680:intron 45.0%
! ACAGGTTGAAGCTAGTTTCC+AGG - chr7_1:41703838-41703857 Msa1019680:intron 45.0%
CGTGCAACAAGACATTGATG+CGG - chr7_1:41703960-41703979 Msa1019680:intron 45.0%
TTCCCCTTTCACTTGAAAGG+TGG - chr7_1:41704015-41704034 Msa1019680:intron 45.0%
CGATGTCACTGTTGAAAGCC+AGG - chr7_1:41698084-41698103 Msa1019680:three_prime_UTR 50.0%
GATACTTCAGTTGCAGCTGG+TGG - chr7_1:41698686-41698705 Msa1019680:intron 50.0%
CATGACATACACAGGACCAG+TGG + chr7_1:41698894-41698913 None:intergenic 50.0%
CACTGGTCCTGTGTATGTCA+TGG - chr7_1:41698892-41698911 Msa1019680:intron 50.0%
GTAGGGACATGGAGCTTATG+AGG - chr7_1:41699087-41699106 Msa1019680:intron 50.0%
! TTGTGCCACTATCCCCACAT+TGG - chr7_1:41699220-41699239 Msa1019680:CDS 50.0%
! TGTGCCACTATCCCCACATT+GGG - chr7_1:41699221-41699240 Msa1019680:CDS 50.0%
TCTTCCCAATGTGGGGATAG+TGG + chr7_1:41699228-41699247 None:intergenic 50.0%
GCAGTAGTCTTCCCAATGTG+GGG + chr7_1:41699235-41699254 None:intergenic 50.0%
AGAGGACACTCCTTTGCAGA+TGG + chr7_1:41699516-41699535 None:intergenic 50.0%
! TTCGCAAGCTCTAGTTGGAG+AGG + chr7_1:41699534-41699553 None:intergenic 50.0%
CTCCAACTAGAGCTTGCGAA+TGG - chr7_1:41699534-41699553 Msa1019680:intron 50.0%
! CTCCATTCGCAAGCTCTAGT+TGG + chr7_1:41699539-41699558 None:intergenic 50.0%
TCTGGCACATCCATTCTCCT+AGG - chr7_1:41700186-41700205 Msa1019680:intron 50.0%
CTGGCACATCCATTCTCCTA+GGG - chr7_1:41700187-41700206 Msa1019680:intron 50.0%
TCTTTCGCTCCCTAGGAGAA+TGG + chr7_1:41700199-41700218 None:intergenic 50.0%
ATTCTCCTAGGGAGCGAAAG+AGG - chr7_1:41700198-41700217 Msa1019680:intron 50.0%
TGAAACCTCTTTCGCTCCCT+AGG + chr7_1:41700206-41700225 None:intergenic 50.0%
AGACCCACTTGGAACACATG+GGG - chr7_1:41700450-41700469 Msa1019680:intron 50.0%
CTTCCCCATGTGTTCCAAGT+GGG + chr7_1:41700456-41700475 None:intergenic 50.0%
TCTTCCCCATGTGTTCCAAG+TGG + chr7_1:41700457-41700476 None:intergenic 50.0%
GAACACATGGGGAAGAGTCA+TGG - chr7_1:41700461-41700480 Msa1019680:intron 50.0%
GTCAATAGTAGCACCAGGAC+AGG - chr7_1:41700533-41700552 Msa1019680:intron 50.0%
TAGCACCAGGACAGGATAAC+AGG - chr7_1:41700541-41700560 Msa1019680:intron 50.0%
GTGATCCTGTTATCCTGTCC+TGG + chr7_1:41700549-41700568 None:intergenic 50.0%
! AACACAGGTTGAGACACCGT+TGG - chr7_1:41700706-41700725 Msa1019680:intron 50.0%
! ACACAGGTTGAGACACCGTT+GGG - chr7_1:41700707-41700726 Msa1019680:intron 50.0%
GGTGAACTCCGCAGCTATTT+GGG - chr7_1:41701211-41701230 Msa1019680:intron 50.0%
! TTGTGGGCTGACTGTGTGTA+GGG - chr7_1:41702153-41702172 Msa1019680:intron 50.0%
GCTGACTGTGTGTAGGGAAT+TGG - chr7_1:41702159-41702178 Msa1019680:intron 50.0%
! CAAGCGTTGTGGCACATGAA+AGG + chr7_1:41702219-41702238 None:intergenic 50.0%
CTTTCATGTGCCACAACGCT+TGG - chr7_1:41702217-41702236 Msa1019680:intron 50.0%
GAGAGAAAGTCTCGTAGAGG+TGG + chr7_1:41702534-41702553 None:intergenic 50.0%
GCAATCAAGATCTCTTGCGG+AGG - chr7_1:41703080-41703099 Msa1019680:intron 50.0%
! AGCTAGTTTCCAGGTAGTCG+AGG - chr7_1:41703847-41703866 Msa1019680:intron 50.0%
!! TAGTGCTGACACGGTCCTTA+GGG - chr7_1:41703925-41703944 Msa1019680:five_prime_UTR 50.0%
GCAACAAGACATTGATGCGG+CGG - chr7_1:41703963-41703982 Msa1019680:intron 50.0%
TCTTCCTGGGATGACGAGCA+TGG - chr7_1:41698220-41698239 Msa1019680:three_prime_UTR 55.0%
GGGCAAGCACCAGACACAAA+TGG + chr7_1:41698980-41698999 None:intergenic 55.0%
TTGTGTCTGGTGCTTGCCCT+AGG - chr7_1:41698981-41699000 Msa1019680:CDS 55.0%
!! TGTGGGGAGGTGTTGTGGTA+TGG - chr7_1:41699696-41699715 Msa1019680:intron 55.0%
GGGCAGTTACGGCAACTTCT+TGG - chr7_1:41700132-41700151 Msa1019680:intron 55.0%
CTTGTCGCCACTGTGAAGCT+AGG - chr7_1:41700592-41700611 Msa1019680:intron 55.0%
GCGGGGGAGTTATCTGTGTT+CGG + chr7_1:41700871-41700890 None:intergenic 55.0%
TAGCTTCCCACTTTCCCTCG+AGG + chr7_1:41700893-41700912 None:intergenic 55.0%
GGGTGAACTCCGCAGCTATT+TGG - chr7_1:41701210-41701229 Msa1019680:intron 55.0%
! CTTGTGGGCTGACTGTGTGT+AGG - chr7_1:41702152-41702171 Msa1019680:intron 55.0%
CTCACAAGACCTCGACTACC+TGG + chr7_1:41703859-41703878 None:intergenic 55.0%
!! GTAGTGCTGACACGGTCCTT+AGG - chr7_1:41703924-41703943 Msa1019680:five_prime_UTR 55.0%
CTTCAGTTGCAGCTGGTGGG+AGG - chr7_1:41698690-41698709 Msa1019680:intron 60.0%
!! GCAGATGTGGGGAGGTGTTG+TGG - chr7_1:41699691-41699710 Msa1019680:intron 60.0%
CGCCACTGTGAAGCTAGGTG+CGG - chr7_1:41700597-41700616 Msa1019680:intron 60.0%
GACGTGCGGGTCTCGTATTC+CGG + chr7_1:41700644-41700663 None:intergenic 60.0%
TGAGACACCGTTGGGTCACG+TGG - chr7_1:41700715-41700734 Msa1019680:intron 60.0%
AGATAACTCCCCCGCCTCGA+GGG - chr7_1:41700876-41700895 Msa1019680:intron 60.0%
TTCCCACTTTCCCTCGAGGC+GGG + chr7_1:41700889-41700908 None:intergenic 60.0%
CTTCCCACTTTCCCTCGAGG+CGG + chr7_1:41700890-41700909 None:intergenic 60.0%
GCGGAGTTCACCCCAGAACT+GGG + chr7_1:41701203-41701222 None:intergenic 60.0%
TGCGGAGTTCACCCCAGAAC+TGG + chr7_1:41701204-41701223 None:intergenic 60.0%
GACATTGATGCGGCGGCTCT+TGG - chr7_1:41703970-41703989 Msa1019680:intron 60.0%
GCTGCCATGCTCGTCATCCC+AGG + chr7_1:41698227-41698246 None:intergenic 65.0%
CGCCGCACCTAGCTTCACAG+TGG + chr7_1:41700602-41700621 None:intergenic 65.0%
TGTGAAGCTAGGTGCGGCGC+TGG - chr7_1:41700603-41700622 Msa1019680:intron 65.0%
CAGATAACTCCCCCGCCTCG+AGG - chr7_1:41700875-41700894 Msa1019680:intron 65.0%
TCCCACTTTCCCTCGAGGCG+GGG + chr7_1:41700888-41700907 None:intergenic 65.0%
TCCCCCGCCTCGAGGGAAAG+TGG - chr7_1:41700883-41700902 Msa1019680:intron 70.0%
CCCACTTTCCCTCGAGGCGG+GGG + chr7_1:41700887-41700906 None:intergenic 70.0%
CCCCCGCCTCGAGGGAAAGT+GGG - chr7_1:41700884-41700903 Msa1019680:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 41697954 41704190 41697954 ID=Msa1019680;Name=Msa1019680
chr7_1 mRNA 41697954 41704190 41697954 ID=Msa1019680-mRNA-1;Parent=Msa1019680;Name=Msa1019680-mRNA-1;_AED=0.18;_eAED=0.18;_QI=401|1|1|1|0.90|0.83|12|347|215
chr7_1 exon 41697954 41697981 41697954 ID=Msa1019680-mRNA-1:exon:8142;Parent=Msa1019680-mRNA-1
chr7_1 exon 41698004 41698442 41698004 ID=Msa1019680-mRNA-1:exon:8141;Parent=Msa1019680-mRNA-1
chr7_1 exon 41698971 41699074 41698971 ID=Msa1019680-mRNA-1:exon:8140;Parent=Msa1019680-mRNA-1
chr7_1 exon 41699184 41699256 41699184 ID=Msa1019680-mRNA-1:exon:8139;Parent=Msa1019680-mRNA-1
chr7_1 exon 41699753 41699800 41699753 ID=Msa1019680-mRNA-1:exon:8138;Parent=Msa1019680-mRNA-1
chr7_1 exon 41699889 41699970 41699889 ID=Msa1019680-mRNA-1:exon:8137;Parent=Msa1019680-mRNA-1
chr7_1 exon 41701912 41702042 41701912 ID=Msa1019680-mRNA-1:exon:8136;Parent=Msa1019680-mRNA-1
chr7_1 exon 41702360 41702449 41702360 ID=Msa1019680-mRNA-1:exon:8135;Parent=Msa1019680-mRNA-1
chr7_1 exon 41702554 41702638 41702554 ID=Msa1019680-mRNA-1:exon:8134;Parent=Msa1019680-mRNA-1
chr7_1 exon 41703409 41703482 41703409 ID=Msa1019680-mRNA-1:exon:8133;Parent=Msa1019680-mRNA-1
chr7_1 exon 41703865 41703954 41703865 ID=Msa1019680-mRNA-1:exon:8132;Parent=Msa1019680-mRNA-1
chr7_1 exon 41704039 41704190 41704039 ID=Msa1019680-mRNA-1:exon:8131;Parent=Msa1019680-mRNA-1
chr7_1 five_prime_UTR 41704039 41704190 41704039 ID=Msa1019680-mRNA-1:five_prime_utr;Parent=Msa1019680-mRNA-1
chr7_1 five_prime_UTR 41703865 41703954 41703865 ID=Msa1019680-mRNA-1:five_prime_utr;Parent=Msa1019680-mRNA-1
chr7_1 five_prime_UTR 41703409 41703482 41703409 ID=Msa1019680-mRNA-1:five_prime_utr;Parent=Msa1019680-mRNA-1
chr7_1 five_prime_UTR 41702554 41702638 41702554 ID=Msa1019680-mRNA-1:five_prime_utr;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41702360 41702449 41702360 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41701912 41702042 41701912 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41699889 41699970 41699889 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41699753 41699800 41699753 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41699184 41699256 41699184 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41698971 41699074 41698971 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 CDS 41698323 41698442 41698323 ID=Msa1019680-mRNA-1:cds;Parent=Msa1019680-mRNA-1
chr7_1 three_prime_UTR 41698004 41698322 41698004 ID=Msa1019680-mRNA-1:three_prime_utr;Parent=Msa1019680-mRNA-1
chr7_1 three_prime_UTR 41697954 41697981 41697954 ID=Msa1019680-mRNA-1:three_prime_utr;Parent=Msa1019680-mRNA-1
Gene Sequence

>Msa1019680

ATGTGGGGAGGTGTTGTGGTATGGAACCCCCAAAGCTGTATAAAGGATTTGGAAAGTAAGGATCCAGTCAGACATATGATTTCTCCTCAGGATCTCCAGAAGCTTTTTGAAGTTCTCATGGGGCAGTTACGGCAACTTCTTGGTCTAAAGTCAGATGACCTTTATGTTGGTGAGTCTGGCACATCCATTCTCCTAGGGAGCGAAAGAGGTTTCACAGAATGGGAATTGGATGTCTTGTCAAGGAAGCATTTTTGCTTTAATCTCCTTTCATGTGCCACAACGCTTGGATCTCTTTCTAGATTGGTACAATCATTACCAAGGATGATTATAATGGATGAAATTGGAAAACAGGTGAAGTTTTCACTTGAGGCTGCAAAATCTGCTCAAAATAATGCAACTGTTGGAATGTATGATGCTTCTGCTGTATCATCAAGGCAATCAAGATCTCTTGCGGAGGATGCCTTTTTTCATCCTTCAATTATGTCCATCAGCTACTATTCATTTGAGCATTGTTTTGCTATCTATTCGCCATTTTTTCTGCCAGTTACAATGCATATCCTTCTAGCTGCGATAAGAGAATGGAAAAGATACAAGCAAGAAAATAGGAAGTACTTGGCTTGGAAGGGCAAAGCAAAAGCTGCAGCTTAA

Protein sequence

>Msa1019680

MWGGVVVWNPQSCIKDLESKDPVRHMISPQDLQKLFEVLMGQLRQLLGLKSDDLYVGESGTSILLGSERGFTEWELDVLSRKHFCFNLLSCATTLGSLSRLVQSLPRMIIMDEIGKQVKFSLEAAKSAQNNATVGMYDASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVTMHILLAAIREWKRYKQENRKYLAWKGKAKAAA*